The complex eukaryotic transcriptome: unexpected pervasive transcription and novel small RNAs (Q37634306)

21 August 2017

1 reference

title

The complex eukaryotic transcriptome: unexpected pervasive transcription and novel small RNAs (English)

1 reference

21 August 2017

0 references

Alain Jacquier

1 reference

21 August 2017

language of work or name

1 reference

1 December 2009

1 reference

21 August 2017

published in

Nature Reviews Genetics

1 reference

21 August 2017

1 reference

21 August 2017

1 reference

21 August 2017

page(s)

833-844

1 reference

Origins and Mechanisms of miRNAs and siRNAs

21 August 2017

cites work

1 reference

Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals

31 March 2020

1 reference

Pervasive transcription constitutes a new level of eukaryotic genome regulation

31 March 2020

1 reference

Long non-coding RNAs: insights into functions

31 March 2020

1 reference

Evolution and functions of long noncoding RNAs

31 March 2020

1 reference

Noncoding but nonexpendable: transcriptional regulation by large noncoding RNA in eukaryotes

31 March 2020

1 reference

Characterization of the yeast transcriptome

31 March 2020

1 reference

1996: a vintage year for yeast and Yeast

31 March 2020

1 reference

Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs

31 March 2020

1 reference

Identification of putative noncoding RNAs among the RIKEN mouse full-length cDNA collection

31 March 2020

1 reference

Genome Network and FANTOM3: assessing the complexity of the transcriptome

31 March 2020

1 reference

Large-scale transcriptional activity in chromosomes 21 and 22

31 March 2020

1 reference

Experimental validation of the regulated expression of large numbers of non-coding RNAs from the mouse genome

31 March 2020

1 reference

Novel RNAs identified from an in-depth analysis of the transcriptome of human chromosomes 21 and 22

31 March 2020

1 reference

Transcriptome content and dynamics at single-nucleotide resolution

31 March 2020

1 reference

Beyond expression profiling: next generation uses of high density oligonucleotide arrays

31 March 2020

1 reference

RNA-Seq: a revolutionary tool for transcriptomics

31 March 2020

1 reference

The antisense transcriptomes of human cells

31 March 2020

1 reference

The long and short of RNAs

31 March 2020

1 reference

Multifaceted mammalian transcriptome

31 March 2020

1 reference

Dark matter in the genome: evidence of widespread transcription detected by microarray tiling experiments

31 March 2020

1 reference

Genome-wide transcription and the implications for genomic organization

31 March 2020

1 reference

The long and the short of RNA maps

31 March 2020

1 reference

RNA maps reveal new RNA classes and a possible function for pervasive transcription

31 March 2020

1 reference

Divergent transcription from active promoters

31 March 2020

1 reference

Tiny RNAs associated with transcription start sites in animals.

31 March 2020

1 reference

Nascent RNA sequencing reveals widespread pausing and divergent initiation at human promoters

31 March 2020

1 reference

RNA polymerase is poised for activation across the genome

31 March 2020

1 reference

RNA polymerase stalling at developmental control genes in the Drosophila melanogaster embryo

31 March 2020

1 reference

Promoter proximal pausing on genes in metazoans

31 March 2020

1 reference

Poised RNA polymerase II gives pause for thought

31 March 2020

1 reference

High-resolution profiling of histone methylations in the human genome

31 March 2020

1 reference

A chromatin landmark and transcription initiation at most promoters in human cells

31 March 2020

1 reference

A high-resolution map of active promoters in the human genome

31 March 2020

1 reference

Post-transcriptional processing generates a diversity of 5'-modified long and short RNAs

31 March 2020

1 reference

In vivo transcriptional pausing and cap formation on three Drosophila heat shock genes

31 March 2020

1 reference

The many pathways of RNA degradation

31 March 2020

1 reference

A new yeast poly(A) polymerase complex involved in RNA quality control

31 March 2020

1 reference

RNA degradation by the exosome is promoted by a nuclear polyadenylation complex

31 March 2020

1 reference

Cryptic pol II transcripts are degraded by a nuclear quality control pathway involving a new poly(A) polymerase

31 March 2020

1 reference

Accumulation of unstable promoter-associated transcripts upon loss of the nuclear exosome subunit Rrp6p in Saccharomyces cerevisiae

31 March 2020

1 reference

Widespread bidirectional promoters are the major source of cryptic transcripts in yeast

31 March 2020

1 reference

Bidirectional promoters generate pervasive transcription in yeast

31 March 2020

1 reference

A high-resolution atlas of nucleosome occupancy in yeast

31 March 2020

1 reference

Gene loops juxtapose promoters and terminators in yeast

31 March 2020

1 reference

RNA exosome depletion reveals transcription upstream of active human promoters

31 March 2020

1 reference

Yeast exosome mutants accumulate 3'-extended polyadenylated forms of U4 small nuclear RNA and small nucleolar RNAs

31 March 2020

1 reference

Functions of the exosome in rRNA, snoRNA and snRNA synthesis

31 March 2020

1 reference

RNA-binding protein Nrd1 directs poly(A)-independent 3'-end formation of RNA polymerase II transcripts

31 March 2020

1 reference

Identification of cis elements directing termination of yeast nonpolyadenylated snoRNA transcripts

31 March 2020

1 reference

Nrd1 interacts with the nuclear exosome for 3' processing of RNA polymerase II transcripts

31 March 2020

1 reference

The cotranscriptional assembly of snoRNPs controls the biosynthesis of H/ACA snoRNAs in Saccharomyces cerevisiae

31 March 2020

1 reference

Cotranscriptional recruitment of the pseudouridylsynthetase Cbf5p and of the RNA binding protein Naf1p during H/ACA snoRNP assembly

31 March 2020

1 reference

Termination of cryptic unstable transcripts is directed by yeast RNA-binding proteins Nrd1 and Nab3.

31 March 2020

1 reference

Transcription termination and nuclear degradation of cryptic unstable transcripts: a role for the nrd1-nab3 pathway in genome surveillance

31 March 2020

1 reference

Phosphorylation of the RNA polymerase II C-terminal domain dictates transcription termination choice

31 March 2020

1 reference

Cytoplasmic decay of intergenic transcripts in Saccharomyces cerevisiae

31 March 2020

1 reference

Novel low abundance and transient RNAs in yeast revealed by tiling microarrays and ultra high-throughput sequencing are not conserved across closely related yeast species

31 March 2020

1 reference

RNA polymerase plays both sides: Vivid and bidirectional transcription around and upstream of active promoters

31 March 2020

1 reference

Induced ncRNAs allosterically modify RNA-binding proteins in cis to inhibit transcription

31 March 2020

1 reference

Bidirectional transcription directs both transcriptional gene activation and suppression in human cells

31 March 2020

1 reference

Promoter-associated RNA is required for RNA-directed transcriptional gene silencing in human cells

31 March 2020

1 reference

Repression of the human dihydrofolate reductase gene by a non-coding interfering transcript

31 March 2020

1 reference

Regulation of an intergenic transcript controls adjacent gene transcription in Saccharomyces cerevisiae.

31 March 2020

1 reference

Intergenic transcription is required to repress the Saccharomyces cerevisiae SER3 gene

31 March 2020

1 reference

Properties of an intergenic terminator and start site switch that regulate IMD2 transcription in yeast

31 March 2020

1 reference

Metabolic regulation of IMD2 transcription and an unusual DNA element that generates short transcripts

31 March 2020

1 reference

Regulation of a eukaryotic gene by GTP-dependent start site selection and transcription attenuation.

31 March 2020

1 reference

Genome-wide distribution of yeast RNA polymerase II and its control by Sen1 helicase

31 March 2020

1 reference

Futile cycle of transcription initiation and termination modulates the response to nucleotide shortage in S. cerevisiae

31 March 2020

1 reference

Mutations of RNA polymerase II activate key genes of the nucleoside triphosphate biosynthetic pathways

31 March 2020

1 reference

Regulation of yeast NRD1 expression by premature transcription termination

31 March 2020

1 reference

The transcriptional landscape of the mammalian genome

31 March 2020

1 reference

Cap analysis gene expression for high-throughput analysis of transcriptional starting point and identification of promoter usage

31 March 2020

1 reference

5' Long serial analysis of gene expression (LongSAGE) and 3' LongSAGE for transcriptome characterization and genome annotation

31 March 2020

1 reference

Antisense artifacts in transcriptome microarray experiments are resolved by actinomycin D.

31 March 2020

1 reference

Origin of phenotypes: genes and transcripts

31 March 2020

1 reference

The Nrd1–Nab3–Sen1 termination complex interacts with the Ser5-phosphorylated RNA polymerase II C-terminal domain

31 March 2020

1 reference

Interaction of yeast RNA-binding proteins Nrd1 and Nab3 with RNA polymerase II terminator elements

31 March 2020

1 reference

RNA polymerase plays both sides: vivid and bidirectional transcription around and upstream of active promoters.

31 March 2020

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19920851

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1038/NRG2683

1 reference

release_ivjn4oz3pfgrtoajcg225bwkby

21 August 2017

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/ivjn4oz3pfgrtoajcg225bwkby

mapped directly with Wikidata item

24 November 2022

based on heuristic

1 reference