Core promoter-specific gene regulation: TATA box selectivity and Initiator-dependent bi-directionality of serum response factor-activated transcription (Q36759161)

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scientific article published on 26 January 2016

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English	Core promoter-specific gene regulation: TATA box selectivity and Initiator-dependent bi-directionality of serum response factor-activated transcription	scientific article published on 26 January 2016

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6 March 2020

Core promoter-specific gene regulation: TATA box selectivity and Initiator-dependent bi-directionality of serum response factor-activated transcription (English)

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6 March 2020

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Elsie Gonzalez-Hurtado

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Ernest Martinez

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26 January 2016

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Biochimica et Biophysica Acta

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553-563

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Bidirectional Transcription Arises from Two Distinct Hubs of Transcription Factor Binding and Active Chromatin

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4818687

29 September 2017

Structure-Function Analysis of the Drosophila melanogaster Caudal Transcription Factor Provides Insights into Core Promoter-preferential Activation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4818687

29 September 2017

Human promoters are intrinsically directional

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4818687

29 September 2017

Enhancer-core-promoter specificity separates developmental and housekeeping gene regulation.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4818687

29 September 2017

Drosophila TRF2 is a preferential core promoter regulator

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4818687

29 September 2017

TRF2, but not TBP, mediates the transcription of ribosomal protein genes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4818687

29 September 2017

Rho-actin signaling to the MRTF coactivators dominates the immediate transcriptional response to serum in fibroblasts

1 reference

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29 September 2017

Core promoter functions in the regulation of gene expression of Drosophila dorsal target genes

1 reference

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29 September 2017

Perspectives on the RNA polymerase II core promoter

1 reference

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29 September 2017

H3K4me3 interactions with TAF3 regulate preinitiation complex assembly and selective gene activation

1 reference

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29 September 2017

Core promoter-selective coregulators of transcription by RNA polymerase II.

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29 September 2017

Core promoter-selective function of HMGA1 and Mediator in Initiator-dependent transcription

1 reference

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29 September 2017

New insights into the function of transcription factor TFIID from recent structural studies.

1 reference

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29 September 2017

Specific inhibition of NF-Y subunits triggers different cell proliferation defects

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29 September 2017

Unexpected roles for core promoter recognition factors in cell-type-specific transcription and gene regulation

1 reference

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29 September 2017

A perspective of promoter architecture from the CCAAT box.

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29 September 2017

Regulation of gene expression via the core promoter and the basal transcriptional machinery.

1 reference

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29 September 2017

Caudal, a key developmental regulator, is a DPE-specific transcriptional factor

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4818687

29 September 2017

Human ATAC Is a GCN5/PCAF-containing acetylase complex with a novel NC2-like histone fold module that interacts with the TATA-binding protein

1 reference

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29 September 2017

The RNA polymerase II core promoter - the gateway to transcription.

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29 September 2017

The histone-like NF-Y is a bifunctional transcription factor

1 reference

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29 September 2017

A balance between NF-Y and p53 governs the pro- and anti-apoptotic transcriptional response.

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29 September 2017

Prevalence of the initiator over the TATA box in human and yeast genes and identification of DNA motifs enriched in human TATA-less core promoters

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29 September 2017

Serum response factor: master regulator of the actin cytoskeleton and contractile apparatus

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29 September 2017

Genome-wide analysis of core promoter elements from conserved human and mouse orthologous pairs

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4818687

29 September 2017

Basic mechanisms for the control of germ cell gene expression

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29 September 2017

Dual regulation of c-Myc by p300 via acetylation-dependent control of Myc protein turnover and coactivation of Myc-induced transcription.

1 reference

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29 September 2017

A core promoter element downstream of the TATA box that is recognized by TFIIB.

1 reference

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29 September 2017

Functional characterization of core promoter elements: DPE-specific transcription requires the protein kinase CK2 and the PC4 coactivator

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29 September 2017

Transcriptional regulation and the role of diverse coactivators in animal cells

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29 September 2017

Reversal of the silencing of tetracycline-controlled genes requires the coordinate action of distinctly acting transcription factors

1 reference

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29 September 2017

Structure and mechanism of the RNA polymerase II transcription machinery

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4818687

29 September 2017

The RNA polymerase II core promoter

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29 September 2017

Multi-protein complexes in eukaryotic gene transcription

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29 September 2017

Enhancer-promoter specificity mediated by DPE or TATA core promoter motifs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4818687

29 September 2017

TAF-Containing and TAF-independent forms of transcriptionally active TBP in vivo.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4818687

29 September 2017

Distinct classes of yeast promoters revealed by differential TAF recruitment

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29 September 2017

Novel cofactors and TFIIA mediate functional core promoter selectivity by the human TAFII150-containing TFIID complex

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29 September 2017

Different core promoters possess distinct regulatory activities in the Drosophila embryo

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29 September 2017

New core promoter element in RNA polymerase II-dependent transcription: sequence-specific DNA binding by transcription factor IIB

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29 September 2017

A potential role for Elf-1 in terminal transferase gene regulation

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29 September 2017

The role of general initiation factors in transcription by RNA polymerase II

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29 September 2017

Transcription of the lymphocyte-specific terminal deoxynucleotidyltransferase gene requires a specific core promoter structure

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29 September 2017

Core promoter-specific function of a mutant transcription factor TFIID defective in TATA-box binding

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29 September 2017

Mechanism of differential utilization of the his3 TR and TC TATA elements

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29 September 2017

Compatibility between enhancers and promoters determines the transcriptional specificity of gooseberry and gooseberry neuro in the Drosophila embryo

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29 September 2017

Direct recognition of initiator elements by a component of the transcription factor IID complex

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29 September 2017

Core promoter specificities of the Sp1 and VP16 transcriptional activation domains

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29 September 2017

TATA-binding protein-associated factor(s) in TFIID function through the initiator to direct basal transcription from a TATA-less class II promoter.

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29 September 2017

Regulation of the human beta-actin promoter by upstream and intron domains

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29 September 2017

5' flanking and first intron sequences of the human beta-actin gene required for efficient promoter activity

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29 September 2017

Functional heterogeneity of mammalian TATA-box sequences revealed by interaction with a cell-specific enhancer

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29 September 2017

Transcription factor binding and spacing constraints in the human β-actin proximal promoter

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29 September 2017

TAFs and TFIIA mediate differential utilization of the tandem Adh promoters

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29 September 2017

Binding of TAFs to core elements directs promoter selectivity by RNA polymerase II

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29 September 2017

Functional analysis of the transforming growth factor beta responsive elements in the WAF1/Cip1/p21 promoter

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29 September 2017

Mutations on the DNA binding surface of TBP discriminate between yeast TATA and TATA-less gene transcription.

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28 June 2018

Interconversion between active and inactive TATA-binding protein transcription complexes in the mouse genome

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28 June 2018

Promoter specificity mediates the independent regulation of neighboring genes

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28 June 2018

Definition of multiple, functionally distinct TATA elements, one of which is a target in the hsp70 promoter for E1A regulation

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28 June 2018

The role of specific enhancer-promoter interactions in the Drosophila Adh promoter switch.

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28 June 2018

Proliferation of human primary vascular smooth muscle cells depends on serum response factor

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5 September 2018

Developmental and cell type-specific regulation of core promoter transcription factors in germ cells of frogs and mice

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5 September 2018

Activator-specific recruitment of TFIID and regulation of ribosomal protein genes in yeast

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5 September 2018

A unified nomenclature for TATA box binding protein (TBP)-associated factors (TAFs) involved in RNA polymerase II transcription

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5 September 2018

The NF-Y angle to the CCAAT's tale

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based on heuristic

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A regulated two-step mechanism of TBP binding to DNA: a solvent-exposed surface of TBP inhibits TATA box recognition

1 reference

https://pubmed.ncbi.nlm.nih.gov/26824723

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Selective recruitment of TAFs by yeast upstream activating sequences. Implications for eukaryotic promoter structure

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https://pubmed.ncbi.nlm.nih.gov/26824723

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Dominant negative mutations in yeast TFIID define a bipartite DNA-binding region

1 reference

https://pubmed.ncbi.nlm.nih.gov/26824723

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Variants of the TATA-binding protein can distinguish subsets of RNA polymerase I, II, and III promoters

1 reference

https://pubmed.ncbi.nlm.nih.gov/26824723

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1016/J.BBAGRM.2016.01.005

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6 March 2020

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6 March 2020

PubMed publication ID

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