Modeling of the rotavirus group C capsid predicts a surface topology distinct from other rotavirus species (Q36373266)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26524514%20AND%20SRC:MED&resulttype=core&format=json

28 February 2020

title

Modeling of the rotavirus group C capsid predicts a surface topology distinct from other rotavirus species (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26524514%20AND%20SRC:MED&resulttype=core&format=json

28 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26524514%20AND%20SRC:MED&resulttype=core&format=json

28 February 2020

Elif Eren

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26524514%20AND%20SRC:MED&resulttype=core&format=json

28 February 2020

Kimberly Zamuda

series ordinal

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26524514%20AND%20SRC:MED&resulttype=core&format=json

28 February 2020

language of work or name

English

0 references

publication date

2 November 2015

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26524514%20AND%20SRC:MED&resulttype=core&format=json

28 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26524514%20AND%20SRC:MED&resulttype=core&format=json

28 February 2020

volume

487

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26524514%20AND%20SRC:MED&resulttype=core&format=json

28 February 2020

page(s)

150-162

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26524514%20AND%20SRC:MED&resulttype=core&format=json

MEGA6: Molecular Evolutionary Genetics Analysis version 6.0

28 February 2020

cites work

1 reference

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Location of the dsRNA-Dependent Polymerase, VP1, in Rotavirus Particles

30 September 2017

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Cell attachment protein VP8* of a human rotavirus specifically interacts with A-type histo-blood group antigen

30 September 2017

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Rotavirus diversity and evolution in the post-vaccine world

30 September 2017

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Structural insights into the coupling of virion assembly and rotavirus replication

30 September 2017

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Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega

30 September 2017

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Porcine rotavirus closely related to novel group of human rotaviruses

30 September 2017

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Atomic model of an infectious rotavirus particle

30 September 2017

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X-ray Crystal Structure of the Rotavirus Inner Capsid Particle at 3.8 Å Resolution

30 September 2017

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MolProbity: all-atom structure validation for macromolecular crystallography

30 September 2017

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Structure of Rotavirus Outer-Layer Protein VP7 Bound with a Neutralizing Fab

30 September 2017

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AutoDock Vina: Improving the speed and accuracy of docking with a new scoring function, efficient optimization, and multithreading

30 September 2017

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Molecular interactions in rotavirus assembly and uncoating seen by high-resolution cryo-EM

30 September 2017

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Advances and pitfalls of protein structural alignment

30 September 2017

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Protein structure prediction on the Web: a case study using the Phyre server

30 September 2017

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Galectins: structure, function and therapeutic potential

30 September 2017

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I-TASSER server for protein 3D structure prediction

30 September 2017

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Genetic heterogeneity in the VP7 of group C rotaviruses

30 September 2017

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Evaluating protein structures determined by structural genomics consortia

30 September 2017

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Rotavirus spike protein VP5* binds alpha2beta1 integrin on the cell surface and competes with virus for cell binding and infectivity

30 September 2017

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VIPERdb: a relational database for structural virology

30 September 2017

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Detection and characterization of human group C rotaviruses in Bangladesh

30 September 2017

1 reference

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GlyProt: in silico glycosylation of proteins

30 September 2017

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30 September 2017

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Secondary-structure matching (SSM), a new tool for fast protein structure alignment in three dimensions

30 September 2017

1 reference

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Structural rearrangements in the membrane penetration protein of a non-enveloped virus

30 September 2017

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UCSF Chimera--a visualization system for exploratory research and analysis

30 September 2017

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30 September 2017

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Modeller: generation and refinement of homology-based protein structure models

30 September 2017

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Production of hybrid double- or triple-layered virus-like particles of group A and C rotaviruses using a baculovirus expression system

30 September 2017

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A single glycosylation site within the receptor-binding domain of the avian sarcoma/leukosis virus glycoprotein is critical for receptor binding

30 September 2017

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The rhesus rotavirus VP4 sialic acid binding domain has a galectin fold with a novel carbohydrate binding site

30 September 2017

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Differential infection of polarized epithelial cell lines by sialic acid-dependent and sialic acid-independent rotavirus strains

30 September 2017

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Trypsin cleavage stabilizes the rotavirus VP4 spike

30 September 2017

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Atomic structure of the major capsid protein of rotavirus: implications for the architecture of the virion

30 September 2017

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The VP5 domain of VP4 can mediate attachment of rotaviruses to cells

30 September 2017

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Integrins alpha2beta1 and alpha4beta1 can mediate SA11 rotavirus attachment and entry into cells

30 September 2017

1 reference

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Attachment and growth of human rotaviruses RV-3 and S12/85 in Caco-2 cells depend on VP4.

30 September 2017

1 reference

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Cleavage of rhesus rotavirus VP4 after arginine 247 is essential for rotavirus-like particle-induced fusion from without

30 September 2017

1 reference

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Carbohydrates facilitate correct disulfide bond formation and folding of rotavirus VP7

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4679652

Survey of human group C rotaviruses in Japan during the winter of 1992 to 1993

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4679652

The N terminus of rotavirus VP2 is necessary for encapsidation of VP1 and VP3

30 September 2017

1 reference

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VERIFY3D: assessment of protein models with three-dimensional profiles

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4679652

Functional and structural analysis of the sialic acid-binding domain of rotaviruses

30 September 2017

1 reference

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Genetic mapping indicates that VP4 is the rotavirus cell attachment protein in vitro and in vivo

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4679652

Crystallization and preliminary X-ray diffraction analysis of the human dimeric S-Lac lectin (L-14-II).

30 September 2017

1 reference

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X-ray crystal structure of the human dimeric S-Lac lectin, L-14-II, in complex with lactose at 2.9-A resolution

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4679652

Characterization of virus-like particles produced by the expression of rotavirus capsid proteins in insect cells

30 September 2017

1 reference

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Mapping the hemagglutination domain of rotaviruses.

30 September 2017

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First detection of group C rotavirus in fecal specimens of children with diarrhea in the United States.

30 September 2017

1 reference

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Coding assignment and nucleotide sequence of simian rotavirus SA11 gene segment 10: location of glycosylation sites suggests that the signal peptide is not cleaved

30 September 2017

1 reference

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Proteolytic enhancement of rotavirus infectivity: molecular mechanisms

30 September 2017

2 references

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30 September 2017

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Structural polypeptides of simian rotavirus SA11 and the effect of trypsin

7 January 2021

1 reference

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Trypsin enhancement of rotavirus infectivity: mechanism of enhancement

30 September 2017

1 reference

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The VP8 fragment of VP4 is the rhesus rotavirus hemagglutinin

30 September 2017

1 reference

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Group C rotavirus requires sialic acid for erythrocyte and cell receptor binding

30 September 2017

1 reference

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Expression of the major capsid protein VP6 of group C rotavirus and synthesis of chimeric single-shelled particles by using recombinant baculoviruses

30 September 2017

1 reference

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Analysis of genetic divergence among strains of porcine rotavirus C, with focus on VP4 and VP7 genotypes in Japan

30 September 2017

1 reference

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Modeling of the human rhinovirus C capsid suggests a novel topography with insights on receptor preference and immunogenicity

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4679652

Identification, phylogenetic analysis and classification of porcine group C rotavirus VP7 sequences from the United States and Canada

28 June 2018

1 reference

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Migration of the swine influenza virus δ-cluster hemagglutinin N-linked glycosylation site from N142 to N144 results in loss of antibody cross-reactivity

28 June 2018

1 reference

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Detection and characterization of group C rotaviruses in asymptomatic piglets in Ireland

28 June 2018

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Sequence analysis of the gene encoding VP4 of a bovine group C rotavirus: molecular evidence for a new P genotype

28 June 2018

1 reference

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Characterization of homotypic and heterotypic VP7 neutralization sites of rhesus rotavirus

28 June 2018

1 reference

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HIV N-linked glycosylation site analyzer and its further usage in anchored alignment

28 June 2018

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Sialic acid dependence in rotavirus host cell invasion

21 September 2018

1 reference

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A simple reference state makes a significant improvement in near-native selections from structurally refined docking decoys

21 September 2018

1 reference

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Viral envelope protein glycosylation is a molecular determinant of the neuroinvasiveness of the New York strain of West Nile virus

21 September 2018

1 reference

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Incidence and genetic diversity of group C rotavirus among adults

21 September 2018

1 reference

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VP6-sequence-based cutoff values as a criterion for rotavirus species demarcation

21 September 2018

1 reference

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Human and most animal rotavirus strains do not require the presence of sialic acid on the cell surface for efficient infectivity

5 December 2018

1 reference

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Oligosaccharide composition of calf rotavirus

7 January 2021

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Rotavirus Antigenicity Is Affected by the Genetic Context and Glycosylation of VP7

7 January 2021

1 reference

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Human serogroup C rotavirus in Finland

7 January 2021

1 reference

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N-glycosylation of HIV-gp120 may constrain recognition by T lymphocytes

7 January 2021

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26524514

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1016/J.VIROL.2015.10.017

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26524514%20AND%20SRC:MED&resulttype=core&format=json

28 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26524514%20AND%20SRC:MED&resulttype=core&format=json

28 February 2020

PubMed publication ID

26524514

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26524514%20AND%20SRC:MED&resulttype=core&format=json