Dissecting DNA damage response pathways by analysing protein localization and abundance changes during DNA replication stress (Q36209899)

12 August 2017

Dissecting DNA damage response pathways by analysing protein localization and abundance changes during DNA replication stress (English)

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12 August 2017

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12 August 2017

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12 August 2017

Michael Riffle

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Grant W Brown

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Johnny M Tkach

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12 August 2017

Askar Yimit

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12 August 2017

Anna Y Lee

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12 August 2017

Michael Costanzo

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12 August 2017

Daniel Jaschob

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12 August 2017

Jason A Hendry

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12 August 2017

Jiongwen Ou

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12 August 2017

Jason Moffat

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12 August 2017

Charles Boone

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12 August 2017

language of work or name

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29 July 2012

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12 August 2017

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966-976

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describes a project that uses

12 August 2017

Cytoscape

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9 June 2022

https://europepmc.org/search?query=(METHODS:'Cytoscape')

inferred from PubMed Central ID database lookup

ImageJ

1 reference

11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC3434236/fullTextXML

inferred from PubMed Central ID database lookup

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Choreography of recombination proteins during the DNA damage response

1 October 2017

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RAD18 transmits DNA damage signalling to elicit homologous recombination repair

1 October 2017

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Principles of ubiquitin and SUMO modifications in DNA repair.

1 October 2017

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P bodies promote stress granule assembly in Saccharomyces cerevisiae

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1 October 2017

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Genome-wide analysis of Rad52 foci reveals diverse mechanisms impacting recombination

1 October 2017

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Edc3p and a glutamine/asparagine-rich domain of Lsm4p function in processing body assembly in Saccharomyces cerevisiae

1 October 2017

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Analysis of P-body assembly in Saccharomyces cerevisiae

1 October 2017

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Histone deacetylases RPD3 and HOS2 regulate the transcriptional activation of DNA damage-inducible genes

1 October 2017

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The Rad53 signal transduction pathway: Replication fork stabilization, DNA repair, and adaptation

1 October 2017

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Single-cell proteomic analysis of S. cerevisiae reveals the architecture of biological noise

1 October 2017

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Ubiquitin-binding domains in Y-family polymerases regulate translesion synthesis

1 October 2017

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Global analysis of protein phosphorylation in yeast

1 October 2017

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Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles

1 October 2017

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Fructose-1,6-bisphosphatase mediates cellular responses to DNA damage and aging in Saccharomyces cerevisiae

1 October 2017

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Processing bodies require RNA for assembly and contain nontranslating mRNAs

1 October 2017

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Choreography of the DNA damage response: spatiotemporal relationships among checkpoint and repair proteins

1 October 2017

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Integration of chemical-genetic and genetic interaction data links bioactive compounds to cellular target pathways

1 October 2017

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Hydroxyurea Arrests DNA Replication by a Mechanism That Preserves Basal dNTP Pools

1 October 2017

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Global analysis of protein localization in budding yeast

1 October 2017

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A proteomics approach to understanding protein ubiquitination

1 October 2017

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Yeast histone 2A serine 129 is essential for the efficient repair of checkpoint-blind DNA damage

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3434236

Histone H2AX phosphorylation is dispensable for the initial recognition of DNA breaks

1 October 2017

1 reference

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Subcellular localization of yeast ribonucleotide reductase regulated by the DNA replication and damage checkpoint pathways

1 October 2017

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Decapping and Decay of Messenger RNA Occur in Cytoplasmic Processing Bodies

1 October 2017

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A genome-wide screen for methyl methanesulfonate-sensitive mutants reveals genes required for S phase progression in the presence of DNA damage

1 October 2017

1 reference

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Transcriptional response of Saccharomyces cerevisiae to DNA-damaging agents does not identify the genes that protect against these agents

1 October 2017

1 reference

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Getting started with yeast

1 October 2017

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Two checkpoint complexes are independently recruited to sites of DNA damage in vivo

1 October 2017

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Genomic expression responses to DNA-damaging agents and the regulatory role of the yeast ATR homolog Mec1p

1 October 2017

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Genomic expression programs in the response of yeast cells to environmental changes

1 October 2017

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Functional characterization of the S. cerevisiae genome by gene deletion and parallel analysis

1 October 2017

1 reference

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The transcriptional regulator Hap1p (Cyp1p) is essential for anaerobic or heme-deficient growth of Saccharomyces cerevisiae: Genetic and molecular characterization of an extragenic suppressor that encodes a WD repeat protein

1 October 2017

1 reference

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Designer deletion strains derived from Saccharomyces cerevisiae S288C: a useful set of strains and plasmids for PCR-mediated gene disruption and other applications

1 October 2017

1 reference

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Lsm1 promotes genomic stability by controlling histone mRNA decay

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3434236

Activation of Rad53 kinase in response to DNA damage and its effect in modulating phosphorylation of the lagging strand DNA polymerase.

29 June 2018

1 reference

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Methylated DNA causes a physical block to replication forks independently of damage signalling, O(6)-methylguanine or DNA single-strand breaks and results in DNA damage.

29 June 2018

1 reference

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A consensus of core protein complex compositions for Saccharomyces cerevisiae

22 September 2018

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Integrating high-throughput genetic interaction mapping and high-content screening to explore yeast spindle morphogenesis

22 September 2018

1 reference

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Global analysis of the yeast osmotic stress response by quantitative proteomics

22 September 2018

1 reference

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Ino80 chromatin remodeling complex promotes recovery of stalled replication forks

22 September 2018

1 reference

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Role of the iron mobilization and oxidative stress regulons in the genomic response of yeast to hydroxyurea.

22 September 2018

1 reference

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A central role for DNA replication forks in checkpoint activation and response

22 September 2018

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Synthetic Genetic Array (SGA) Analysis in Saccharomyces cerevisiae and Schizosaccharomyces pombe

22 September 2018

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Crossref

https://api.crossref.org/works/10.1038%2FNCB2549

Spk1/Rad53 is regulated by Mec1-dependent protein phosphorylation in DNA replication and damage checkpoint pathways

21 January 2018

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https://api.crossref.org/works/10.1038%2FNCB2549

Effect of hydroxyurea on cellular iron metabolism in human leukemic CCRF-CEM cells: changes in iron uptake and the regulation of transferrin receptor and ferritin gene expression following inhibition of DNA synthesis

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22842922

12 December 2020

inferred from PubMed ID database lookup

Roles for oxidative stress and poly(ADP-ribosyl)ation in the killing of cultured hepatocytes by methyl methanesulfonate

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22842922

12 December 2020

inferred from PubMed ID database lookup

Reduction and loss of the iron center in the reaction of the small subunit of mouse ribonucleotide reductase with hydroxyurea

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22842922

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1038/NCB2549

1 reference

Dimensions Publication ID

12 August 2017

0 references

1 reference

12 August 2017

PubMed publication ID

22842922

1 reference