The population genetics and evolutionary epidemiology of RNA viruses (Q35697519)

9 August 2017

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title

The population genetics and evolutionary epidemiology of RNA viruses (English)

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9 August 2017

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9 August 2017

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Fernando González-Candelas

9 August 2017

series ordinal

object named as

Fernando González-Candelas

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9 August 2017

language of work or name

English

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publication date

1 April 2004

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Nature Reviews Microbiology

9 August 2017

published in

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9 August 2017

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9 August 2017

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9 August 2017

page(s)

279-288

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RNA virus mutations and fitness for survival

9 August 2017

cites work

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High rates of human immunodeficiency virus type 1 recombination: near-random segregation of markers one kilobase apart in one round of viral replication

21 January 2018

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Phylogenetic analysis reveals a low rate of homologous recombination in negative-sense RNA viruses

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Effect of population patchiness and migration rates on the adaptation and divergence of vesicular stomatitis virus quasispecies populations.

21 January 2018

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Is the quasispecies concept relevant to RNA viruses?

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Evolvability of an RNA virus is determined by its mutational neighbourhood

21 January 2018

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Experimental evolution recapitulates natural evolution

21 January 2018

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Restrictions to RNA virus adaptation: an experimental approach

21 January 2018

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Evolutionary dynamics of viral attenuation

21 January 2018

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Distribution of spontaneous mutants and inferences about the replication mode of the RNA bacteriophage phi6.

21 January 2018

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Resistance of virus to extinction on bottleneck passages: study of a decaying and fluctuating pattern of fitness loss

21 January 2018

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Clonal interference and the evolution of RNA viruses.

21 January 2018

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Contributions of vesicular stomatitis virus to the understanding of RNA virus evolution

21 January 2018

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Fitness of RNA virus decreased by Muller's ratchet

21 January 2018

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Evolution of sex and the molecular clock in RNA viruses

21 January 2018

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Different trajectories of parallel evolution during viral adaptation

21 January 2018

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The rhythm of microbial adaptation.

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRMICRO863

Prisoner's dilemma in an RNA virus

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRMICRO863

Escape from Prisoner’s Dilemma in RNA Phage Φ6

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRMICRO863

Genome complexity, robustness and genetic interactions in digital organisms.

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRMICRO863

Evolution of digital organisms at high mutation rates leads to survival of the flattest

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRMICRO863

The molecular epidemiology of influenza

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRMICRO863

Genealogical trees, coalescent theory and the analysis of genetic polymorphisms

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRMICRO863

Measurably evolving populations

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRMICRO863

The inference of stepwise changes in substitution rates using serial sequence samples

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRMICRO863

A viral sampling design for testing the molecular clock and for estimating evolutionary rates and divergence times

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRMICRO863

The Genome sequence of the SARS-associated coronavirus

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRMICRO863

U.S. Human immunodeficiency virus type 1 epidemic: date of origin, population history, and characterization of early strains

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

Tracing the origin and history of the HIV-2 epidemic

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

Molecular epidemiology of an outbreak of infection with hepatitis C virus in recipients of anti-D immunoglobulin

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

Transmission of hepatitis C virus by a cardiac surgeon.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

Immune-mediated positive selection drives human immunodeficiency virus type 1 molecular variation and predicts disease duration.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

Patterns of Intra- and Interhost Nonsynonymous Variation Reveal Strong Purifying Selection in Dengue Virus

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRMICRO863

Evidence of recombination in natural populations of hepatitis A virus

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRMICRO863

A Natural Intergenotypic Recombinant of Hepatitis C Virus Identified in St. Petersburg

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

Timing the ancestor of the HIV-1 pandemic strains

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

Origin and evolution of GBV-C/hepatitis G virus and relationships with ancient human migrations

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

The epidemic behavior of the hepatitis C virus

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

A comparison of the molecular clock of hepatitis C virus in the United States and Japan predicts that hepatocellular carcinoma incidence in the United States will increase over the next two decades

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

Rates of molecular evolution in RNA viruses: a quantitative phylogenetic analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

Different population dynamics of human T cell lymphotropic virus type II in intravenous drug users compared with endemically infected tribes

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

Selection forces and constraints on retroviral sequence variation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

Molecular Clocks and the Puzzle of RNA Virus Origins

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

Toward a comprehensive phylogeny for mammalian and avian herpesviruses

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

Emerging infectious diseases of wildlife--threats to biodiversity and human health

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

Diseases of humans and their domestic mammals: pathogen characteristics, host range and the risk of emergence

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRMICRO863

Population biology of multihost pathogens

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

Error thresholds and the constraints to RNA virus evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

Evolution of cell recognition by viruses

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRMICRO863

Risk to human health from a plethora of simian immunodeficiency viruses in primate bushmeat

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRMICRO863

Origin of HIV-1 in the chimpanzee Pan troglodytes troglodytes

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

AIDS as a zoonosis: scientific and public health implications

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRMICRO863

Characterization of a novel coronavirus associated with severe acute respiratory syndrome

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRMICRO863

Phylogeny of the SARS coronavirus.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

Isolation and characterization of viruses related to the SARS coronavirus from animals in southern China

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

Mosaic evolution of the severe acute respiratory syndrome coronavirus

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

Predicting the evolution of human influenza A.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

High diversity of unknown picorna-like viruses in the sea.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

Disease transmission dynamics and the evolution of antibiotic resistance in hospitals and communal settings

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

Down or out in blood and lymph?

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

Recovery of replication-competent HIV despite prolonged suppression of plasma viremia

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

Recombination: Multiply infected spleen cells in HIV patients

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

Virus dynamics and drug therapy

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

Infectivity and replication capacity of drug-resistant human immunodeficiency virus type 1 variants isolated during primary infection

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

Safety and immunogenicity of combinations of recombinant subtype E and B human immunodeficiency virus type 1 envelope glycoprotein 120 vaccines in healthy Thai adults.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

Clustering patterns of cytotoxic T-lymphocyte epitopes in human immunodeficiency virus type 1 (HIV-1) proteins reveal imprints of immune evasion on HIV-1 global variation

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

Antibody neutralization and escape by HIV-1

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

Homogeneous quasispecies in 16 out of 17 individuals during very early HIV-1 primary infection.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

Virulence and transmissibility of pathogens: what is the relationship?

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

Challenging the trade-off model for the evolution of virulence: is virulence management feasible?

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

Transmission bottlenecks as determinants of virulence in rapidly evolving pathogens

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

Molecular evidence of HIV-1 transmission in a criminal case

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

Molecular epidemiology and forensic genetics: application to a hepatitis C virus transmission event at a hemodialysis unit.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

Rate of deleterious mutation and the distribution of its effects on fitness in vesicular stomatitis virus

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

The biology of digital organisms

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

Population Biology, Evolution, and Infectious Disease: Convergence and Synthesis

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

FREQUENCY-DEPENDENT SELECTION IN A MAMMALIAN RNA VIRUS.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

Rates of spontaneous mutation among RNA viruses

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

Selforganization of matter and the evolution of biological macromolecules

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

The hypercycle. A principle of natural self-organization. Part A: Emergence of the hypercycle

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

Nucleotide sequence heterogeneity of an RNA phage population.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

Evidence for the non-quasispecies evolution of RNA viruses [corrected]

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

Experimental Evolution of Parasites

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

Experimental genomic evolution: extensive compensation for loss of DNA ligase activity in a virus

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

EVOLUTIONARY DYNAMICS OF FITNESS RECOVERY FROM THE DEBILITATING EFFECTS OF MULLER'S RATCHET.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

The red queen reigns in the kingdom of RNA viruses

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

Macroevolution simulated with autonomously replicating computer programs

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

Convergent and divergent sequence evolution in the surface envelope glycoprotein of human immunodeficiency virus type 1 within a single infected patient

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

On the Genealogy of Large Populations

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

Properties of a neutral allele model with intragenic recombination

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

Molecular epidemiology of HIV transmission in a dental practice

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

Evolution of human influenza A viruses over 50 years: rapid, uniform rate of change in NS gene

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

Episodic evolution of RNA viruses

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

Punctuated equilibrium and positive Darwinian evolution in vesicular stomatitis virus

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

Factors in the emergence of infectious diseases

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

Reduced positive selection in vector-borne RNA viruses

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

Analysis of influenza A virus nucleoproteins for the assessment of molecular genetic mechanisms leading to new phylogenetic virus lineages.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

Preferential host switching by primate lentiviruses can account for phylogenetic similarity with the primate phylogeny

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

Reduced replication of 3TC-resistant HIV-1 variants in primary cells due to a processivity defect of the reverse transcriptase enzyme.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

Positive Darwinian evolution in human influenza A viruses

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

Evidence of HIV-1 adaptation to HLA-restricted immune responses at a population level

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

Superinfection and the evolution of parasite virulence.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

Genotypic and phenotypic characterization of HIV-1 patients with primary infection

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

Evolutionary relationship of DNA sequences in finite populations

31 March 2020

1 reference

12 December 2020

Likelihood models for detecting positively selected amino acid sites and applications to the HIV-1 envelope gene

1 reference

12 December 2020

The rate and character of spontaneous mutation in an RNA virus.

1 reference

12 December 2020

RNA virus quasispecies populations can suppress vastly superior mutant progeny

1 reference

12 December 2020

Models of experimental evolution: the role of genetic chance and selective necessity.

1 reference

12 December 2020

Virus evolution and genetic diversity of hantaviruses and their rodent hosts.

1 reference

12 December 2020

Genetic exchange by recombination or reassortment is infrequent in natural populations of a tripartite RNA plant virus

1 reference

12 December 2020

Analysis of a rape case by direct sequencing of the human immunodeficiency virus type 1 pol and gag genes

1 reference

12 December 2020

The advantage of sex in the RNA virus phi6

1 reference

12 December 2020

Rates and dates of divergence between AIDS virus nucleotide sequences

1 reference

12 December 2020

Evaluating the impact of population bottlenecks in experimental evolution

1 reference

12 December 2020

Microevolution in an electronic microcosm.

1 reference

12 December 2020

Genetic diversity and tissue compartmentalization of the hepatitis C virus genome in blood mononuclear cells, liver, and serum from chronic hepatitis C patients

1 reference

12 December 2020

Chemokine coreceptor usage by diverse primary isolates of human immunodeficiency virus type 1

1 reference

12 December 2020

Population dynamics of HIV-1 inferred from gene sequences.

1 reference

12 December 2020

Effect of deleterious mutation-accumulation on the fitness of RNA bacteriophage MS2

1 reference

12 December 2020

Molecular basis of adaptive convergence in experimental populations of RNA viruses.

1 reference

12 December 2020

Estimating mutation parameters, population history and genealogy simultaneously from temporally spaced sequence data

1 reference

12 December 2020

An integrated framework for the inference of viral population history from reconstructed genealogies.

1 reference

12 December 2020

Consistent viral evolutionary changes associated with the progression of human immunodeficiency virus type 1 infection

1 reference

12 December 2020

Exceptional convergent evolution in a virus.

1 reference

12 December 2020

Identifiers

DOI

10.1038/NRMICRO863

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Dimensions Publication ID

9 August 2017

1007066085

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PMC publication ID

7096949

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1 reference