Pilon: an integrated tool for comprehensive microbial variant detection and genome assembly improvement (Q35436695)

8 August 2017

title

Pilon: an integrated tool for comprehensive microbial variant detection and genome assembly improvement (English)

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8 August 2017

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8 August 2017

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8 August 2017

Ashlee M Earl

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8 August 2017

Jennifer Wortman

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8 August 2017

Bruce J Walker

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8 August 2017

Terrance Shea

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8 August 2017

Margaret Priest

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8 August 2017

Amr Abouelliel

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8 August 2017

Sharadha Sakthikumar

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8 August 2017

Qiandong Zeng

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8 August 2017

Sarah K Young

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8 August 2017

language of work or name

English

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publication date

19 November 2014

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8 August 2017

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8 August 2017

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8 August 2017

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8 August 2017

page(s)

e112963

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Creative Commons Attribution 4.0 International

8 August 2017

start time

19 November 2014

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April 2022 Public Data File from Crossref

copyrighted

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cites work

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27 July 2018

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27 July 2018

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27 July 2018

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27 July 2018

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27 July 2018

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27 July 2018

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27 July 2018

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27 July 2018

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Comparative genomic and proteomic analyses of PE/PPE multigene family of Mycobacterium tuberculosis H₃₇Rv and H₃₇Ra reveal novel and interesting differences with implications in virulence.

27 July 2018

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27 July 2018

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27 July 2018

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Independent large scale duplications in multiple M. tuberculosis lineages overlapping the same genomic region

27 July 2018

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Mycobacterium tuberculosis--heterogeneity revealed through whole genome sequencing

27 July 2018

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GenomeView: a next-generation genome browser

27 July 2018

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High-quality draft assemblies of mammalian genomes from massively parallel sequence data

27 July 2018

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Iterative Correction of Reference Nucleotides (iCORN) using second generation sequencing technology

27 July 2018

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Variation among genome sequences of H37Rv strains of Mycobacterium tuberculosis from multiple laboratories

27 July 2018

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Improving draft assemblies by iterative mapping and assembly of short reads to eliminate gaps

27 July 2018

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27 July 2018

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27 July 2018

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Evolution of pathogenicity and sexual reproduction in eight Candida genomes

27 July 2018

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Fast and accurate short read alignment with Burrows-Wheeler transform

27 July 2018

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Analysis of the genetic variation in Mycobacterium tuberculosis strains by multiple genome alignments

27 July 2018

1 reference

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Frequent homologous recombination events in Mycobacterium tuberculosis PE/PPE multigene families: potential role in antigenic variability

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4237348

ProSOM: core promoter prediction based on unsupervised clustering of DNA physical profiles

27 July 2018

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Clustal W and Clustal X version 2.0

27 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4237348

Solution structure of choline binding protein A, the major adhesin of Streptococcus pneumoniae

27 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4237348

The diploid genome sequence of Candida albicans

27 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4237348

Fast algorithms for large-scale genome alignment and comparison

27 July 2018

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Complete Genome Sequence of a Virulent Isolate of Streptococcus pneumoniae

27 July 2018

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Pneumococcal surface protein A inhibits complement activation by Streptococcus pneumoniae.

27 July 2018

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BLAST 2 Sequences, a new tool for comparing protein and nucleotide sequences

27 July 2018

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Basic local alignment search tool

27 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4237348

Genomic epidemiology of Neisseria gonorrhoeae with reduced susceptibility to cefixime in the USA: a retrospective observational study

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4237348

Out-of-Africa migration and Neolithic coexpansion of Mycobacterium tuberculosis with modern humans

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4237348

Characterizing and measuring bias in sequence data

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4237348

A survey of tools for variant analysis of next-generation genome sequencing data

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4237348

Conserved immune recognition hierarchy of mycobacterial PE/PPE proteins during infection in natural hosts

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4237348

SEQuel: improving the accuracy of genome assemblies

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4237348

Comparative analysis of Mycobacterium tuberculosis pe and ppe genes reveals high sequence variation and an apparent absence of selective constraints

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4237348

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4237348

IS6110 restriction fragment length polymorphism typing of clinical isolates of Mycobacterium tuberculosis from patients with pulmonary tuberculosis in Madras, south India.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4237348

10.1371/JOURNAL.PONE.0112963

26 September 2018

Identifiers

DOI

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8 August 2017

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8 August 2017

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