Full-length haplotype reconstruction to infer the structure of heterogeneous virus populations (Q34044256)

30 July 2017

title

Full-length haplotype reconstruction to infer the structure of heterogeneous virus populations (English)

1 reference

30 July 2017

Niko Beerenwinkel

0 references

Martin Däumer

object named as

Martin Däumer

1 reference

30 July 2017

Francesca Di Giallonardo

object named as

Francesca Di Giallonardo

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Karin J Metzner

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Alexandra Trkola

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Huldrych F Günthard

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Peter Rusert

1 reference

30 July 2017

Armin Töpfer

1 reference

30 July 2017

Melanie Rey

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30 July 2017

Sandhya Prabhakaran

1 reference

30 July 2017

Yannick Duport

1 reference

30 July 2017

Christine Leemann

1 reference

30 July 2017

Stefan Schmutz

1 reference

30 July 2017

Nottania K Campbell

1 reference

30 July 2017

Beda Joos

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30 July 2017

Maria Rita Lecca

1 reference

30 July 2017

Andrea Patrignani

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30 July 2017

Christian Beisel

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30 July 2017

Volker Roth

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30 July 2017

language of work or name

English

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publication date

27 June 2014

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30 July 2017

published in

Nucleic Acids Research

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30 July 2017

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30 July 2017

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30 July 2017

page(s)

e115

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Creative Commons Attribution-NonCommercial 3.0 Unported

30 July 2017

start time

4 October 2016

1 reference

April 2022 Public Data File from Crossref

copyrighted

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cites work

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Next-generation sequencing of HIV-1 RNA genomes: determination of error rates and minimizing artificial recombination

5 July 2018

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Reconstruction of viral population structure from next-generation sequencing data using multicommodity flows

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132706

Origin of minority drug-resistant HIV-1 variants in primary HIV-1 infection

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132706

Probabilistic inference of viral quasispecies subject to recombination

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132706

Benchmarking of viral haplotype reconstruction programmes: an overview of the capacities and limitations of currently available programmes

5 July 2018

1 reference

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Reconstructing the Dynamics of HIV Evolution within Hosts from Serial Deep Sequence Data

5 July 2018

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Read length versus depth of coverage for viral quasispecies reconstruction

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132706

Single cell genomics: an individual look at microbes

5 July 2018

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Challenges and opportunities in estimating viral genetic diversity from next-generation sequencing data

5 July 2018

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5 July 2018

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Highly sensitive and specific detection of rare variants in mixed viral populations from massively parallel sequence data

5 July 2018

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Whole genome deep sequencing of HIV-1 reveals the impact of early minor variants upon immune recognition during acute infection

5 July 2018

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Accurate sampling and deep sequencing of the HIV-1 protease gene using a Primer ID

5 July 2018

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Characterization of human immunodeficiency virus type 1 (HIV-1) diversity and tropism in 145 patients with primary HIV-1 infection

5 July 2018

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Performance of ultra-deep pyrosequencing in analysis of HIV-1 pol gene variation

5 July 2018

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Combinatorial analysis and algorithms for quasispecies reconstruction using next-generation sequencing

5 July 2018

1 reference

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Whole-genome characterization of human and simian immunodeficiency virus intrahost diversity by ultradeep pyrosequencing

5 July 2018

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A maraviroc-resistant HIV-1 with narrow cross-resistance to other CCR5 antagonists depends on both N-terminal and extracellular loop domains of drug-bound CCR5

5 July 2018

1 reference

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Error correction of next-generation sequencing data and reliable estimation of HIV quasispecies

5 July 2018

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5 July 2018

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Quantitative deep sequencing reveals dynamic HIV-1 escape and large population shifts during CCR5 antagonist therapy in vivo

5 July 2018

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5 July 2018

1 reference

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Accurate whole human genome sequencing using reversible terminator chemistry

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132706

MetaSim: a sequencing simulator for genomics and metagenomics

5 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132706

Deciphering human immunodeficiency virus type 1 transmission and early envelope diversification by single-genome amplification and sequencing

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132706

In vivo and in vitro escape from neutralizing antibodies 2G12, 2F5, and 4E10.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132706

Bias and artifacts in multitemplate polymerase chain reactions (PCR).

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132706

Genome sequencing in microfabricated high-density picolitre reactors

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132706

5 July 2018

What is a quasispecies?

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FNAR%2FGKU537

HIV Haplotype Inference Using a Propagating Dirichlet Process Mixture Model

21 January 2018

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132706

28 October 2018

https://pubmed.ncbi.nlm.nih.gov/24972832

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

A patient with HIV-1 superinfection

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24972832

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKU537

1 reference

30 July 2017

1 reference

30 July 2017

1 reference