Evaluation and application of modularly assembled zinc-finger nucleases in zebrafish (Q34027107)

30 July 2017

title

Evaluation and application of modularly assembled zinc-finger nucleases in zebrafish (English)

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30 July 2017

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30 July 2017

Cong Zhu

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30 July 2017

Tom Smith

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30 July 2017

Joseph McNulty

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30 July 2017

Amy L Rayla

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30 July 2017

Abirami Lakshmanan

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30 July 2017

Arndt F Siekmann

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30 July 2017

Matthew Buffardi

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30 July 2017

Xiangdong Meng

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30 July 2017

Jimann Shin

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30 July 2017

Arun Padmanabhan

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30 July 2017

Antonio J Giraldez

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30 July 2017

A Thomas Look

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30 July 2017

Jonathan A Epstein

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30 July 2017

Nathan D Lawson

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30 July 2017

Scot A Wolfe

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30 July 2017

language of work or name

English

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publication date

1 October 2011

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30 July 2017

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inferred from page(s)

published in

Development

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30 July 2017

volume

138

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30 July 2017

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30 July 2017

page(s)

4555-4564

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Selection-free zinc-finger-nuclease engineering by context-dependent assembly (CoDA)

30 July 2017

cites work

1 reference

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Targeted integration in rat and mouse embryos with zinc-finger nucleases

28 July 2018

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Oligodendrocyte progenitor cell numbers and migration are regulated by the zebrafish orthologs of the NF1 tumor suppressor gene

28 July 2018

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Genome editing with engineered zinc finger nucleases

28 July 2018

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Targeted mutagenesis in the silkworm Bombyx mori using zinc finger nuclease mRNA injection

28 July 2018

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Gene targeting by homologous recombination in mouse zygotes mediated by zinc-finger nucleases

28 July 2018

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Construction of Combinatorial Libraries that Encode Zinc Finger-Based Transcription Factors

28 July 2018

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A novel miRNA processing pathway independent of Dicer requires Argonaute2 catalytic activity

28 July 2018

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Generation of knockout rats with X-linked severe combined immunodeficiency (X-SCID) using zinc-finger nucleases

28 July 2018

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Cardiac and vascular functions of the zebrafish orthologues of the type I neurofibromatosis gene NFI.

28 July 2018

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Chemokine signaling guides regional patterning of the first embryonic artery

28 July 2018

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Efficient targeting of expressed and silent genes in human ESCs and iPSCs using zinc-finger nucleases

28 July 2018

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Knockout rats via embryo microinjection of zinc-finger nucleases

28 July 2018

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Targeted genome editing in human cells with zinc finger nucleases constructed via modular assembly

28 July 2018

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A mechanosensitive transcriptional mechanism that controls angiogenesis

28 July 2018

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Efficient gene targeting in Drosophila by direct embryo injection with zinc-finger nucleases.

28 July 2018

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An affinity-based scoring scheme for predicting DNA-binding activities of modularly assembled zinc-finger proteins.

28 July 2018

1 reference

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Rapid "open-source" engineering of customized zinc-finger nucleases for highly efficient gene modification

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3177320

Establishment of HIV-1 resistance in CD4+ T cells by genome editing using zinc-finger nucleases

28 July 2018

1 reference

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Heritable targeted gene disruption in zebrafish using designed zinc-finger nucleases

28 July 2018

1 reference

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Unexpected failure rates for modular assembly of engineered zinc fingers

28 July 2018

1 reference

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Controlling morpholino experiments: don't stop making antisense.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3177320

A systematic characterization of factors that regulate Drosophila segmentation via a bacterial one-hybrid system

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3177320

Initiation of zebrafish haematopoiesis by the TATA-box-binding protein-related factor Trf3

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3177320

DNA-binding specificity is a major determinant of the activity and toxicity of zinc-finger nucleases

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3177320

Gateway compatible vectors for analysis of gene function in the zebrafish.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3177320

Structure-based redesign of the dimerization interface reduces the toxicity of zinc-finger nucleases

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3177320

An improved zinc-finger nuclease architecture for highly specific genome editing

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3177320

p53 activation by knockdown technologies

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3177320

FoxH1 negatively modulates flk1 gene expression and vascular formation in zebrafish

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3177320

GATA2 is associated with familial early-onset coronary artery disease

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3177320

Distinct genetic interactions between multiple Vegf receptors are required for development of different blood vessel types in zebrafish

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3177320

In vivo cell biology: following the zebrafish trend

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3177320

Development of zinc finger domains for recognition of the 5'-CNN-3' family DNA sequences and their use in the construction of artificial transcription factors

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3177320

Targeted chromosomal cleavage and mutagenesis in Drosophila using zinc-finger nucleases

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3177320

The art and design of genetic screens: zebrafish

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3177320

Rapid, high-throughput engineering of sequence-specific zinc finger DNA-binding proteins

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3177320

Effective targeted gene 'knockdown' in zebrafish

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3177320

gridlock, an HLH gene required for assembly of the aorta in zebrafish

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3177320

Identifying DNA and protein patterns with statistically significant alignments of multiple sequences

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3177320

Toward controlling gene expression at will: selection and design of zinc finger domains recognizing each of the 5'-GNN-3' DNA target sequences

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3177320

Comprehensive DNA recognition through concerted interactions from adjacent zinc fingers

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3177320

End effects in DNA recognition by zinc finger arrays

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3177320

A general strategy for selecting high-affinity zinc finger proteins for diverse DNA target sites

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3177320

Use of a zinc-finger consensus sequence framework and specificity rules to design specific DNA binding proteins

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3177320

An early haematopoietic defect in mice lacking the transcription factor GATA-2

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3177320

Fitting a mixture model by expectation maximization to discover motifs in biopolymers

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3177320

Sequence logos: a new way to display consensus sequences

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3177320

Sequence specificity is obtained from the majority of modular C2H2 zinc-finger arrays

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3177320

Zinc finger protein-dependent and -independent contributions to the in vivo off-target activity of zinc finger nucleases

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3177320

Rapid mutation of endogenous zebrafish genes using zinc finger nucleases made by Oligomerized Pool ENgineering (OPEN).

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3177320

Targeted gene inactivation in zebrafish using engineered zinc-finger nucleases

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3177320

Design, construction and in vitro testing of zinc finger nucleases.

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3177320

Haploinsufficiency of GATA-2 perturbs adult hematopoietic stem-cell homeostasis

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3177320

Expression and domain-specific function of GATA-2 during differentiation of the hematopoietic precursor cells in midgestation mouse embryos

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3177320

Disruption of acvrl1 increases endothelial cell number in zebrafish cranial vessels.

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3177320

Validated zinc finger protein designs for all 16 GNN DNA triplet targets

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3177320

Notch signaling is required for arterial-venous differentiation during embryonic vascular development.

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3177320

Development of zinc finger domains for recognition of the 5'-ANN-3' family of DNA sequences and their use in the construction of artificial transcription factors

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3177320

Analysis of zinc fingers optimized via phage display: evaluating the utility of a recognition code

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3177320

Binding studies with mutants of Zif268. Contribution of individual side chains to binding affinity and specificity in the Zif268 zinc finger-DNA complex

29 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21937602

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Preassembled zinc-finger arrays for rapid construction of ZFNs

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21937602

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1242/DEV.066779

1 reference

30 July 2017

1 reference

30 July 2017

1 reference