Mathematical modeling of gene networks (Q33969404)

30 July 2017

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title

Mathematical modeling of gene networks (English)

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30 July 2017

Smolen P

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30 July 2017

Baxter DA

series ordinal

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30 July 2017

Byrne JH

series ordinal

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30 July 2017

language of work or name

English

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publication date

1 June 2000

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30 July 2017

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30 July 2017

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30 July 2017

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30 July 2017

page(s)

567-580

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The genome sequence of Drosophila melanogaster

30 July 2017

cites work

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7 January 2021

The jun proto-oncogene is positively autoregulated by its product, Jun/AP-1

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https://api.crossref.org/works/10.1016%2FS0896-6273%2800%2981194-0

7 January 2021

dCLOCK is present in limiting amounts and likely mediates daily interactions between the dCLOCK-CYC transcription factor and the PER-TIM complex

1 reference

https://api.crossref.org/works/10.1016%2FS0896-6273%2800%2981194-0

7 January 2021

Counting and classifying attractors in high dimensional dynamical systems.

1 reference

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7 January 2021

Circadian clocks limited by noise

1 reference

https://api.crossref.org/works/10.1016%2FS0896-6273%2800%2981194-0

7 January 2021

CREB1 encodes a nuclear activator, a repressor, and a cytoplasmic modulator that form a regulatory unit critical for long-term facilitation

1 reference

https://api.crossref.org/works/10.1016%2FS0896-6273%2800%2981194-0

7 January 2021

Aplysia CREB2 represses long-term facilitation: relief of repression converts transient facilitation into long-term functional and structural change

1 reference

https://api.crossref.org/works/10.1016%2FS0896-6273%2800%2981194-0

7 January 2021

Interaction of spatial diffusion and delays in models of genetic control by repression.

1 reference

https://api.crossref.org/works/10.1016%2FS0896-6273%2800%2981194-0

7 January 2021

Genome sequence of the nematode C. elegans: a platform for investigating biology

1 reference

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7 January 2021

New goals for the U.S. Human Genome Project: 1998-2003.

1 reference

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7 January 2021

Neurospora wc-1 and wc-2: transcription, photoresponses, and the origins of circadian rhythmicity

1 reference

https://api.crossref.org/works/10.1016%2FS0896-6273%2800%2981194-0

7 January 2021

Characterization and phosphorylation of CREB-like proteins in Aplysia central nervous system

1 reference

https://api.crossref.org/works/10.1016%2FS0896-6273%2800%2981194-0

7 January 2021

Injection of the cAMP-responsive element into the nucleus of Aplysia sensory neurons blocks long-term facilitation

1 reference

https://api.crossref.org/works/10.1016%2FS0896-6273%2800%2981194-0

7 January 2021

1995 Flemming Lecture. DNA topology and the global control of bacterial gene expression: implications for the regulation of virulence gene expression.

1 reference

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7 January 2021

Common threads in eukaryotic circadian systems

1 reference

https://api.crossref.org/works/10.1016%2FS0896-6273%2800%2981194-0

7 January 2021

Eukaryotic circadian systems: cycles in common

1 reference

https://api.crossref.org/works/10.1016%2FS0896-6273%2800%2981194-0

7 January 2021

Cluster analysis and display of genome-wide expression patterns

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https://api.crossref.org/works/10.1016%2FS0896-6273%2800%2981194-0

7 January 2021

Visualization of single RNA transcripts in situ

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https://api.crossref.org/works/10.1016%2FS0896-6273%2800%2981194-0

7 January 2021

CREB: a major mediator of neuronal neurotrophin responses

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https://api.crossref.org/works/10.1016%2FS0896-6273%2800%2981194-0

7 January 2021

Context-dependent transcriptional regulation

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https://api.crossref.org/works/10.1016%2FS0896-6273%2800%2981194-0

7 January 2021

Construction of a genetic toggle switch in Escherichia coli

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https://api.crossref.org/works/10.1016%2FS0896-6273%2800%2981194-0

7 January 2021

A third component causing random variability beside environment and genotype. A reason for the limited success of a 30 year long effort to standardize laboratory animals?

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https://api.crossref.org/works/10.1016%2FS0896-6273%2800%2981194-0

7 January 2021

DNA chips: promising toys have become powerful tools

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https://api.crossref.org/works/10.1016%2FS0896-6273%2800%2981194-0

7 January 2021

Exact stochastic simulation of coupled chemical reactions

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https://api.crossref.org/works/10.1016%2FS0896-6273%2800%2981194-0

7 January 2021

The logical analysis of continuous, non-linear biochemical control networks

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https://api.crossref.org/works/10.1016%2FS0896-6273%2800%2981194-0

7 January 2021

Impaired experience-dependent plasticity in barrel cortex of mice lacking the alpha and delta isoforms of CREB.

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https://api.crossref.org/works/10.1016%2FS0896-6273%2800%2981194-0

7 January 2021

Interlocked Feedback Loops Within the Drosophila Circadian Oscillator

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https://api.crossref.org/works/10.1016%2FS0896-6273%2800%2981194-0

7 January 2021

A model for circadian oscillations in the Drosophila period protein (PER).

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https://api.crossref.org/works/10.1016%2FS0896-6273%2800%2981194-0

7 January 2021

Mathematics of cellular control processes I. Negative feedback to one gene

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https://api.crossref.org/works/10.1016%2FS0896-6273%2800%2981194-0

7 January 2021

Mathematics of cellular control processes II. Positive feedback to one gene

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https://api.crossref.org/works/10.1016%2FS0896-6273%2800%2981194-0

7 January 2021

Antisense oligodeoxynucleotide-mediated disruption of hippocampal cAMP response element binding protein levels impairs consolidation of memory for water maze training

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https://api.crossref.org/works/10.1016%2FS0896-6273%2800%2981194-0

7 January 2021

Noise-based switches and amplifiers for gene expression

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https://api.crossref.org/works/10.1016%2FS0896-6273%2800%2981194-0

7 January 2021

Altering the level and regulation of the major sigma subunit of RNA polymerase affects gene expression and development in Bacillus subtilis

1 reference

https://api.crossref.org/works/10.1016%2FS0896-6273%2800%2981194-0

7 January 2021

A Composite Ets/Pit-1 Binding Site in the Prolactin Gene Can Mediate Transcriptional Responses to Multiple Signal Transduction Pathways

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https://api.crossref.org/works/10.1016%2FS0896-6273%2800%2981194-0

7 January 2021

Ultrasensitivity in the mitogen-activated protein kinase cascade

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https://api.crossref.org/works/10.1016%2FS0896-6273%2800%2981194-0

7 January 2021

Crosstalk between the thyroid hormone and peroxisome proliferator-activated receptors in regulating peroxisome proliferator-responsive genes.

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https://api.crossref.org/works/10.1016%2FS0896-6273%2800%2981194-0

7 January 2021

Regulated expression of the neural cell adhesion molecule L1 by specific patterns of neural impulses

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https://api.crossref.org/works/10.1016%2FS0896-6273%2800%2981194-0

7 January 2021

Signal transduction from the cell surface to the nucleus through the phosphorylation of transcription factors

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https://api.crossref.org/works/10.1016%2FS0896-6273%2800%2981194-0

7 January 2021

Specifying epigenetic states with autoregulatory transcription factors

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https://api.crossref.org/works/10.1016%2FS0896-6273%2800%2981194-0

7 January 2021

Model genetic circuits encoding autoregulatory transcription factors.

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https://api.crossref.org/works/10.1016%2FS0896-6273%2800%2981194-0

7 January 2021

Accurate reading of morphogen concentrations by nuclear receptors: a formal model of complex transduction pathways

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https://api.crossref.org/works/10.1016%2FS0896-6273%2800%2981194-0

7 January 2021

A model for reading morphogenetic gradients: autocatalysis and competition at the gene level

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https://api.crossref.org/works/10.1016%2FS0896-6273%2800%2981194-0

7 January 2021

Molecular insights into mRNA transport and local translation in the mammalian nervous system

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https://api.crossref.org/works/10.1016%2FS0896-6273%2800%2981194-0

7 January 2021

Properties of learning curves under varied distributions of practice

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https://api.crossref.org/works/10.1016%2FS0896-6273%2800%2981194-0

7 January 2021

Molecular basis for cytoplasmic localization

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https://api.crossref.org/works/10.1016%2FS0896-6273%2800%2981194-0

7 January 2021

The role of the leucine zipper in the fos-jun interaction

1 reference

https://api.crossref.org/works/10.1016%2FS0896-6273%2800%2981194-0

7 January 2021

cAMP response element-binding protein in the amygdala is required for long- but not short-term conditioned taste aversion memory

1 reference

https://api.crossref.org/works/10.1016%2FS0896-6273%2800%2981194-0

7 January 2021

Multistability: a major means of differentiation and evolution in biological systems

1 reference

https://api.crossref.org/works/10.1016%2FS0896-6273%2800%2981194-0

7 January 2021

The Drosophila CLOCK protein undergoes daily rhythms in abundance, phosphorylation, and interactions with the PER-TIM complex.

1 reference

https://api.crossref.org/works/10.1016%2FS0896-6273%2800%2981194-0

7 January 2021

A model for circadian rhythms in Drosophila incorporating the formation of a complex between the PER and TIM proteins

1 reference

https://api.crossref.org/works/10.1016%2FS0896-6273%2800%2981194-0

7 January 2021

Nuclear localization is required for function of the essential clock protein FRQ.

1 reference

https://api.crossref.org/works/10.1016%2FS0896-6273%2800%2981194-0

7 January 2021

Oscillations in a model of repression with external control

1 reference

https://api.crossref.org/works/10.1016%2FS0896-6273%2800%2981194-0

7 January 2021

A combined algorithm for genome-wide prediction of protein function

1 reference

https://api.crossref.org/works/10.1016%2FS0896-6273%2800%2981194-0

7 January 2021

MAP kinase translocates into the nucleus of the presynaptic cell and is required for long-term facilitation in Aplysia.

1 reference

https://api.crossref.org/works/10.1016%2FS0896-6273%2800%2981194-0

7 January 2021

Genetic approaches to memory storage

1 reference

https://api.crossref.org/works/10.1016%2FS0896-6273%2800%2981194-0

7 January 2021

Stochastic mechanisms in gene expression

1 reference

https://api.crossref.org/works/10.1016%2FS0896-6273%2800%2981194-0

7 January 2021

It's a noisy business! Genetic regulation at the nanomolar scale

1 reference

https://api.crossref.org/works/10.1016%2FS0896-6273%2800%2981194-0

7 January 2021

Circuit simulation of genetic networks.

1 reference

https://api.crossref.org/works/10.1016%2FS0896-6273%2800%2981194-0

7 January 2021

Dissection of a circadian oscillation into discrete domains

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https://api.crossref.org/works/10.1016%2FS0896-6273%2800%2981194-0

7 January 2021

The promoter of the gene encoding 3',5'-cyclic adenosine monophosphate (cAMP) response element binding protein contains cAMP response elements: evidence for positive autoregulation of gene transcription

1 reference

https://api.crossref.org/works/10.1016%2FS0896-6273%2800%2981194-0

7 January 2021

Inducibility and negative autoregulation of CREM: an alternative promoter directs the expression of ICER, an early response repressor

1 reference

https://api.crossref.org/works/10.1016%2FS0896-6273%2800%2981194-0

7 January 2021

Long-term structural remodeling in Aplysia sensory neurons requires de novo protein synthesis during a critical time period

1 reference

https://api.crossref.org/works/10.1016%2FS0896-6273%2800%2981194-0

7 January 2021

A clockwork explosion!

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https://api.crossref.org/works/10.1016%2FS0896-6273%2800%2981194-0

7 January 2021

Molecular circadian oscillators: an alternative hypothesis

1 reference

https://api.crossref.org/works/10.1016%2FS0896-6273%2800%2981194-0

7 January 2021

Transcription of individual genes in eukaryotic cells occurs randomly and infrequently

1 reference

https://api.crossref.org/works/10.1016%2FS0896-6273%2800%2981194-0

7 January 2021

Recent progress in biomolecular engineering

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https://api.crossref.org/works/10.1016%2FS0896-6273%2800%2981194-0

7 January 2021

Axonal transport of tubulin in Ti1 pioneer neurons in situ

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https://api.crossref.org/works/10.1016%2FS0896-6273%2800%2981194-0

7 January 2021

Transcription factors responsive to cAMP

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https://api.crossref.org/works/10.1016%2FS0896-6273%2800%2981194-0

7 January 2021

Transcriptional autoregulation of the proto-oncogene fos.

1 reference

https://api.crossref.org/works/10.1016%2FS0896-6273%2800%2981194-0

7 January 2021

A mathematical model for the intracellular circadian rhythm generator.

1 reference

https://api.crossref.org/works/10.1016%2FS0896-6273%2800%2981194-0

7 January 2021

Multiple protein factors interact with the cis-regulatory elements of the proximal promoter in a cell-specific manner and regulate transcription of the dopamine beta-hydroxylase gene.

1 reference

https://api.crossref.org/works/10.1016%2FS0896-6273%2800%2981194-0

7 January 2021

Specific regulation of immediate early genes by patterned neuronal activity

1 reference

https://api.crossref.org/works/10.1016%2FS0896-6273%2800%2981194-0

7 January 2021

Oscillations and multiple steady states in a cyclic gene model with repression.

1 reference

https://api.crossref.org/works/10.1016%2FS0896-6273%2800%2981194-0

7 January 2021

Frequency selectivity, multistability, and oscillations emerge from models of genetic regulatory systems.

1 reference

https://api.crossref.org/works/10.1016%2FS0896-6273%2800%2981194-0

7 January 2021

Effects of macromolecular transport and stochastic fluctuations on dynamics of genetic regulatory systems

1 reference

https://api.crossref.org/works/10.1016%2FS0896-6273%2800%2981194-0

7 January 2021

Modeling transcriptional control in gene networks--methods, recent results, and future directions

1 reference

https://api.crossref.org/works/10.1016%2FS0896-6273%2800%2981194-0

7 January 2021

Positive autoregulation of the myogenic determination gene MyoD1.

1 reference

https://api.crossref.org/works/10.1016%2FS0896-6273%2800%2981194-0

7 January 2021

The role of feedback circuits: Positive feedback circuits are a necessary condition for positive real eigenvalues of the Jacobian matrix

1 reference

https://api.crossref.org/works/10.1016%2FS0896-6273%2800%2981194-0

7 January 2021

Dynamical behaviour of biological regulatory networks--I. Biological role of feedback loops and practical use of the concept of the loop-characteristic state.

1 reference

https://api.crossref.org/works/10.1016%2FS0896-6273%2800%2981194-0

7 January 2021

Genetic dissection of consolidated memory in Drosophila.

1 reference

https://api.crossref.org/works/10.1016%2FS0896-6273%2800%2981194-0

7 January 2021

Expression of the gene encoding transcription factor cyclic adenosine 3',5'-monophosphate (cAMP) response element-binding protein (CREB): regulation by follicle-stimulating hormone-induced cAMP signaling in primary rat Sertoli cells

1 reference

https://api.crossref.org/works/10.1016%2FS0896-6273%2800%2981194-0

7 January 2021

Large-scale temporal gene expression mapping of central nervous system development

1 reference

https://api.crossref.org/works/10.1016%2FS0896-6273%2800%2981194-0

7 January 2021

Microarray analysis of Drosophila development during metamorphosis.

1 reference

https://api.crossref.org/works/10.1016%2FS0896-6273%2800%2981194-0

7 January 2021

Direct allelic variation scanning of the yeast genome.

1 reference

https://api.crossref.org/works/10.1016%2FS0896-6273%2800%2981194-0

7 January 2021

On the relationship between genomic regulatory element organization and gene regulatory dynamics.

1 reference

https://api.crossref.org/works/10.1016%2FS0896-6273%2800%2981194-0

7 January 2021

CREB and the formation of long-term memory

1 reference

https://api.crossref.org/works/10.1016%2FS0896-6273%2800%2981194-0

7 January 2021

CREB as a memory modulator: induced expression of a dCREB2 activator isoform enhances long-term memory in Drosophila

1 reference

https://api.crossref.org/works/10.1016%2FS0896-6273%2800%2981194-0

7 January 2021

The molecular control of circadian behavioral rhythms and their entrainment in Drosophila.

1 reference

https://api.crossref.org/works/10.1016%2FS0896-6273%2800%2981194-0

7 January 2021

Genomic cis-regulatory logic: experimental and computational analysis of a sea urchin gene

1 reference

https://api.crossref.org/works/10.1016%2FS0896-6273%2800%2981194-0

7 January 2021

Quantitation of transcription and clonal selection of single living cells with beta-lactamase as reporter

1 reference

https://api.crossref.org/works/10.1016%2FS0896-6273%2800%2981194-0

7 January 2021

10.1016/S0896-6273(00)81194-0

Identifiers

DOI

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30 July 2017

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