Annotation of cis-regulatory elements by identification, subclassification, and functional assessment of multispecies conserved sequences (Q33895983)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15998734%20AND%20SRC:MED&resulttype=core&format=json

13 January 2020

title

Annotation of cis-regulatory elements by identification, subclassification, and functional assessment of multispecies conserved sequences (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15998734%20AND%20SRC:MED&resulttype=core&format=json

13 January 2020

main subject

cis-regulatory element

1 reference

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15998734%20AND%20SRC:MED&resulttype=core&format=json

13 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15998734%20AND%20SRC:MED&resulttype=core&format=json

13 January 2020

Shyam Prabhakar

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15998734%20AND%20SRC:MED&resulttype=core&format=json

13 January 2020

Jim R Hughes

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15998734%20AND%20SRC:MED&resulttype=core&format=json

13 January 2020

Jan-Fang Cheng

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15998734%20AND%20SRC:MED&resulttype=core&format=json

13 January 2020

Nicki Ventress

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15998734%20AND%20SRC:MED&resulttype=core&format=json

13 January 2020

Kevin Clark

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15998734%20AND%20SRC:MED&resulttype=core&format=json

13 January 2020

Pieter de Jong

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15998734%20AND%20SRC:MED&resulttype=core&format=json

13 January 2020

Eddy Rubin

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15998734%20AND%20SRC:MED&resulttype=core&format=json

13 January 2020

Douglas R Higgs

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15998734%20AND%20SRC:MED&resulttype=core&format=json

13 January 2020

language of work or name

English

0 references

publication date

5 July 2005

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15998734%20AND%20SRC:MED&resulttype=core&format=json

Proceedings of the National Academy of Sciences of the United States of America

13 January 2020

published in

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15998734%20AND%20SRC:MED&resulttype=core&format=json

13 January 2020

volume

102

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15998734%20AND%20SRC:MED&resulttype=core&format=json

13 January 2020

issue

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15998734%20AND%20SRC:MED&resulttype=core&format=json

13 January 2020

page(s)

9830-9835

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15998734%20AND%20SRC:MED&resulttype=core&format=json

Bioinformatics for the 'bench biologist': how to find regulatory regions in genomic DNA.

13 January 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1174996

Globin gene activation during haemopoiesis is driven by protein complexes nucleated by GATA-1 and GATA-2.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1174996

Comparative genomics at the vertebrate extremes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1174996

Ultraconserved Elements in the Human Genome

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1174996

Comparative analysis of the alpha-like globin clusters in mouse, rat, and human chromosomes indicates a mechanism underlying breaks in conserved synteny

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1174996

Identification and characterization of multi-species conserved sequences

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1174996

Comparative analyses of multi-species sequences from targeted genomic regions

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1174996

Bioinformatics in the post-sequence era.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1174996

Functional evolution of noncoding DNA.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1174996

Sequence first. Ask questions later

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1174996

Integration and diversity of the regulatory network composed of Maf and CNC families of transcription factors

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1174996

Transcriptional regulation of erythropoiesis: an affair involving multiple partners

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1174996

Comprehensive analysis of CpG islands in human chromosomes 21 and 22

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1174996

Vertebrate genome sequencing: building a backbone for comparative genomics

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1174996

DNA methylation patterns and epigenetic memory

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1174996

Identification of a conserved erythroid specific domain of histone acetylation across the alpha-globin gene cluster

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1174996

Characterization of a widely expressed gene (LUC7-LIKE; LUC7L) defining the centromeric boundary of the human alpha-globin domain

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1174996

Conserved noncoding sequences are reliable guides to regulatory elements.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1174996

Identification of a Coordinate Regulator of Interleukins 4, 13, and 5 by Cross-Species Sequence Comparisons

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1174996

The pattern of replication at a human telomeric region (16p13.3): its relationship to chromosome structure and gene expression

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1174996

Alternative splicing of the fibronectin EIIIB exon depends on specific TGCATG repeats

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1174996

Understanding alpha globin gene expression: a step towards effective gene therapy.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1174996

Control of alternative pre-mRNA splicing by distributed pentameric repeats

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1174996

The relationship between chromosome structure and function at a human telomeric region

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1174996

Transcriptional activation of human zeta 2 globin promoter by the alpha globin regulatory element (HS-40): functional role of specific nuclear factor-DNA complexes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1174996

2.2 Mb of contiguous nucleotide sequence from chromosome III of C. elegans

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1174996

Sp1 functions in a chromatin-dependent manner to augment human alpha-globin promoter activity

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1174996

Analysis of the closely linked adult chicken alpha-globin genes in recombinant DNAs

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1174996

A previously undetected pseudogene in the human alpha globin gene cluster

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1174996

Non-methylated CpG-rich islands at the human alpha-globin locus: implications for evolution of the alpha-globin pseudogene

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1174996

Nuclear scaffold attachment sites in the human globin gene complexes.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1174996

Cell type-specific protein-DNA interactions in the human zeta-globin upstream promoter region: displacement of Sp1 by the erythroid cell-specific factor NF-E1.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1174996

Characterization of the major regulatory element upstream of the human alpha-globin gene cluster

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1174996

Cis-acting sequences regulating expression of the human alpha-globin cluster lie within constitutively open chromatin

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1174996

Expression of alpha- and beta-globin genes occurs within different nuclear domains in haemopoietic cells.

5 July 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0503401102

Characterization and comparison of the human and mouse Dist1/alpha-globin complex reveals a tightly packed multiple gene cluster containing differentially expressed transcription units.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0503401102

Monosomy for the most telomeric, gene-rich region of the short arm of human chromosome 16 causes minimal phenotypic effects

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0503401102

Evidence for erosion of mouse CpG islands during mammalian evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0503401102

Comparative genome analysis delimits a chromosomal domain and identifies key regulatory elements in the alpha globin cluster

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0503401102

Localization of the horse (Equus caballus) alpha-globin gene complex to chromosome 13 by fluorescence in situ hybridization

21 January 2018

1 reference

12 December 2020

Genomic rearrangement of the alpha-globin gene complex during mammalian evolution

1 reference

12 December 2020

Identification of DNA sequences required for transcription of the human α1-globin gene in a new SV40 host-vector system

1 reference

12 December 2020

A major positive regulatory region located far upstream of the human alpha-globin gene locus

1 reference

12 December 2020

Localization of the α-like globin gene cluster to region q12 of rabbit chromosome 6 by in situ hybridization

1 reference

12 December 2020

Identifiers

DOI

10.1073/PNAS.0503401102

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15998734%20AND%20SRC:MED&resulttype=core&format=json

13 January 2020

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15998734%20AND%20SRC:MED&resulttype=core&format=json

13 January 2020

PubMed publication ID

15998734

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15998734%20AND%20SRC:MED&resulttype=core&format=json