CATdb: a public access to Arabidopsis transcriptome data from the URGV-CATMA platform (Q31133276)

12 November 2017

CATdb: a public access to Arabidopsis transcriptome data from the URGV-CATMA platform (English)

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12 November 2017

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Séverine Gagnot

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12 November 2017

Jean-Philippe Tamby

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12 November 2017

Marie-Laure Martin-Magniette

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12 November 2017

Frédérique Bitton

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12 November 2017

Ludivine Taconnat

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12 November 2017

Sandrine Balzergue

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12 November 2017

Sébastien Aubourg

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12 November 2017

Jean-Pierre Renou

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12 November 2017

Alain Lecharny

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12 November 2017

Véronique Brunaud

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12 November 2017

language of work or name

English

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publication date

16 October 2007

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12 November 2017

Nucleic Acids Research

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12 November 2017

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12 November 2017

Database issue

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12 November 2017

D986-90

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The Stanford Microarray Database: implementation of new analysis tools and open source release of software

12 November 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238931

ArrayExpress--a public database of microarray experiments and gene expression profiles

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238931

NCBI GEO: mining tens of millions of expression profiles--database and tools update

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238931

A gene expression map of Arabidopsis thaliana development

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238931

BarleyBase--an expression profiling database for plant genomics

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238931

Versatile gene-specific sequence tags for Arabidopsis functional genomics: transcript profiling and reverse genetics applications

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238931

CIBEX: center for information biology gene expression database

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238931

FLAGdb++: a database for the functional analysis of the Arabidopsis genome

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238931

The Arabidopsis Information Resource (TAIR): a model organism database providing a centralized, curated gateway to Arabidopsis biology, research materials and community

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238931

CATMA: a complete Arabidopsis GST database

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238931

Microarray data representation, annotation and storage

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238931

Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238931

Minimum information about a microarray experiment (MIAME)-toward standards for microarray data

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238931

Lack of correct data format and comparability limits future integrative microarray research.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238931

Gene-expression analysis and network discovery using Genevestigator

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238931

Benchmarking the CATMA microarray. A novel tool for Arabidopsis transcriptome analysis.

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238931

Development and evaluation of an Arabidopsis whole genome Affymetrix probe array

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238931

Automatic design of gene-specific sequence tags for genome-wide functional studies

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238931

25 November 2018

Identifiers

DOI

10.1093/NAR/GKM757

1 reference

journals/nar/GagnotTMBTBARLB08

12 November 2017

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DBLP Dataset 2021-01-02

28 January 2021

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12 November 2017

PubMed publication ID

17940091

1 reference