MHC class II epitope predictive algorithms. (Q30388353)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20408898%20AND%20SRC:MED&resulttype=core&format=json

31 January 2020

review article

1 reference

title

MHC class II epitope predictive algorithms (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20408898%20AND%20SRC:MED&resulttype=core&format=json

31 January 2020

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20408898%20AND%20SRC:MED&resulttype=core&format=json

31 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20408898%20AND%20SRC:MED&resulttype=core&format=json

31 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20408898%20AND%20SRC:MED&resulttype=core&format=json

31 January 2020

Claus Lundegaard

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20408898%20AND%20SRC:MED&resulttype=core&format=json

31 January 2020

publication date

12 April 2010

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20408898%20AND%20SRC:MED&resulttype=core&format=json

31 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20408898%20AND%20SRC:MED&resulttype=core&format=json

31 January 2020

volume

130

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20408898%20AND%20SRC:MED&resulttype=core&format=json

31 January 2020

issue

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20408898%20AND%20SRC:MED&resulttype=core&format=json

31 January 2020

page(s)

319-328

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20408898%20AND%20SRC:MED&resulttype=core&format=json

Antigen presentation by MHC class II molecules: invariant chain function, protein trafficking, and the molecular basis of diverse determinant capture

31 January 2020

cites work

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2567.2010.03268.X

T cell responses affected by aminopeptidase N (CD13)-mediated trimming of major histocompatibility complex class II-bound peptides

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2567.2010.03268.X

Endosomal proteolysis and MHC class II function

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2567.2010.03268.X

The exogenous pathway for antigen presentation on major histocompatibility complex class II and CD1 molecules

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2567.2010.03268.X

MHC ligands and peptide motifs: first listing

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2567.2010.03268.X

SYFPEITHI: database for MHC ligands and peptide motifs

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2567.2010.03268.X

A roadmap for the immunomics of category A-C pathogens

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2567.2010.03268.X

MHCBN: a comprehensive database of MHC binding and non-binding peptides

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2567.2010.03268.X

AntiJen: a quantitative immunology database integrating functional, thermodynamic, kinetic, biophysical, and cellular data

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2567.2010.03268.X

Antigen recognition by H-2-restricted T cells. I. Cell-free antigen processing

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2567.2010.03268.X

Antigen presentation by supported planar membranes containing affinity-purified I-Ad

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2567.2010.03268.X

Isolation and characterization of antigen-la complexes involved in T cell recognition

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2567.2010.03268.X

Functional recombinant MHC class II molecules and high-throughput peptide-binding assays

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2567.2010.03268.X

Sensitive quantitative predictions of peptide-MHC binding by a 'Query by Committee' artificial neural network approach.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2567.2010.03268.X

Reliable prediction of T-cell epitopes using neural networks with novel sequence representations

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2567.2010.03268.X

Prediction of major histocompatibility complex binding regions of protein antigens by sequence pattern analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2567.2010.03268.X

Precise prediction of major histocompatibility complex class II-peptide interaction based on peptide side chain scanning

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2567.2010.03268.X

Generation of tissue-specific and promiscuous HLA ligand databases using DNA microarrays and virtual HLA class II matrices

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2567.2010.03268.X

Prediction of MHC class II-binding peptides using an evolutionary algorithm and artificial neural network

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2567.2010.03268.X

Improved prediction of MHC class I and class II epitopes using a novel Gibbs sampling approach

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2567.2010.03268.X

Detecting subtle sequence signals: a Gibbs sampling strategy for multiple alignment

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2567.2010.03268.X

Prediction of MHC class II binders using the ant colony search strategy

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2567.2010.03268.X

SVRMHC prediction server for MHC-binding peptides

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2567.2010.03268.X

Predicting Class II MHC-Peptide binding: a kernel based approach using similarity scores

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2567.2010.03268.X

Prediction of MHC-binding peptides of flexible lengths from sequence-derived structural and physicochemical properties

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2567.2010.03268.X

Automated generation and evaluation of specific MHC binding predictive tools: ARB matrix applications.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2567.2010.03268.X

Prediction of MHC class II binding peptides based on an iterative learning model

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2567.2010.03268.X

Peptide length-based prediction of peptide-MHC class II binding

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2567.2010.03268.X

Towards the in silico identification of class II restricted T-cell epitopes: a partial least squares iterative self-consistent algorithm for affinity prediction.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2567.2010.03268.X

Predicting peptides binding to MHC class II molecules using multi-objective evolutionary algorithms

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2567.2010.03268.X

PepDist: a new framework for protein-peptide binding prediction based on learning peptide distance functions

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2567.2010.03268.X

A probabilistic meta-predictor for the MHC class II binding peptides.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2567.2010.03268.X

A systematic assessment of MHC class II peptide binding predictions and evaluation of a consensus approach

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2567.2010.03268.X

Prediction of MHC class II binding affinity using SMM-align, a novel stabilization matrix alignment method

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2567.2010.03268.X

NN-align. An artificial neural network-based alignment algorithm for MHC class II peptide binding prediction

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2567.2010.03268.X

Prediction of MHC class I binding peptides, using SVMHC

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2567.2010.03268.X

ProPred: prediction of HLA-DR binding sites.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2567.2010.03268.X

Naturally processed HLA class II peptides reveal highly conserved immunogenic flanking region sequence preferences that reflect antigen processing rather than peptide-MHC interactions.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2567.2010.03268.X

Ab initio prediction of peptide-MHC binding geometry for diverse class I MHC allotypes

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2567.2010.03268.X

Structural prediction of peptides binding to MHC class I molecules

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2567.2010.03268.X

Predicting peptide binding to MHC pockets via molecular modeling, implicit solvation, and global optimization

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2567.2010.03268.X

Structural prediction of peptides bound to MHC class I.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2567.2010.03268.X

A structure-based approach for prediction of MHC-binding peptides

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2567.2010.03268.X

A structure-based algorithm to predict potential binding peptides to MHC molecules with hydrophobic binding pockets

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2567.2010.03268.X

Ranking of binding and nonbinding peptides to MHC class I molecules using inverse folding approach: implications for vaccine design

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2567.2010.03268.X

A novel predictive technique for the MHC class II peptide-binding interaction

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2567.2010.03268.X

Coupling in silico and in vitro analysis of peptide-MHC binding: a bioinformatic approach enabling prediction of superbinding peptides and anchorless epitopes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2567.2010.03268.X

MULTIPRED: a computational system for prediction of promiscuous HLA binding peptides

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2567.2010.03268.X

Efficient peptide-MHC-I binding prediction for alleles with few known binders.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2567.2010.03268.X

Learning MHC I--peptide binding.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2567.2010.03268.X

NetMHCpan, a method for MHC class I binding prediction beyond humans

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2567.2010.03268.X

NetMHCpan, a method for quantitative predictions of peptide binding to any HLA-A and -B locus protein of known sequence

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2567.2010.03268.X

The PickPocket method for predicting binding specificities for receptors based on receptor pocket similarities: application to MHC-peptide binding

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2567.2010.03268.X

Quantitative predictions of peptide binding to any HLA-DR molecule of known sequence: NetMHCIIpan

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2567.2010.03268.X

Shift-invariant adaptive double threading: learning MHC II-peptide binding

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2567.2010.03268.X

Evaluation of MHC-II peptide binding prediction servers: applications for vaccine research

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2567.2010.03268.X

Sequence logos: a new way to display consensus sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2567.2010.03268.X

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2567.2010.03268.X

The MHC motif viewer: a visualization tool for MHC binding motifs

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2567.2010.03268.X

Identifying HLA supertypes by learning distance functions

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2567.2010.03268.X

Identifiying human MHC supertypes using bioinformatic methods.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2567.2010.03268.X

Definition of supertypes for HLA molecules using clustering of specificity matrices

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2567.2010.03268.X

Nine major HLA class I supertypes account for the vast preponderance of HLA-A and -B polymorphism

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2567.2010.03268.X

HLA class I supertypes: a revised and updated classification

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2567.2010.03268.X

Broadly immunogenic HLA class I supertype-restricted elite CTL epitopes recognized in a diverse population infected with different HIV-1 subtypes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2567.2010.03268.X

Extensive HLA class I allele promiscuity among viral CTL epitopes

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2567.2010.03268.X

Essential differences in ligand presentation and T cell epitope recognition among HLA molecules of the HLA-B44 supertype

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2567.2010.03268.X

The peptide-binding specificity of HLA-A*3001 demonstrates membership of the HLA-A3 supertype

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2567.2010.03268.X

Identifying MHC class I epitopes by predicting the TAP transport efficiency of epitope precursors.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2567.2010.03268.X

EpiJen: a server for multistep T cell epitope prediction

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2567.2010.03268.X

Modeling the MHC class I pathway by combining predictions of proteasomal cleavage, TAP transport and MHC class I binding

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2567.2010.03268.X

An integrative approach to CTL epitope prediction: a combined algorithm integrating MHC class I binding, TAP transport efficiency, and proteasomal cleavage predictions.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2567.2010.03268.X

Large-scale validation of methods for cytotoxic T-lymphocyte epitope prediction

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2567.2010.03268.X

Validation of in silico prediction by in vitro immunoserological results of fine epitope mapping on citrate synthase specific autoantibodies

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2567.2010.03268.X

Promiscuous T cell epitope prediction of Candida albicans secretory aspartyl protienase family of proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2567.2010.03268.X

Searching for borrelial T cell epitopes associated with antibiotic-refractory Lyme arthritis

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2567.2010.03268.X

Human CD4+ T cell epitopes from vaccinia virus induced by vaccination or infection

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2567.2010.03268.X

Competition between two MHC binding registers in a single peptide processed from myelin basic protein influences tolerance and susceptibility to autoimmunity.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2567.2010.03268.X

Prediction of MHC class I binding peptides using profile motifs.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2567.2010.03268.X

SVM based method for predicting HLA-DRB1*0401 binding peptides in an antigen sequence.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2567.2010.03268.X

EpiToolKit--a web server for computational immunomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2567.2010.03268.X

Limitations of Ab initio predictions of peptide binding to MHC class II molecules

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2913211

Binding of biotinylated peptides to MHC class II proteins on cell surfaces

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2913211

Hidden Markov model-based prediction of antigenic peptides that interact with MHC class II molecules.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2913211

In silico prediction of peptides binding to multiple HLA-DR molecules accurately identifies immunodominant epitopes from gp43 of Paracoccidioides brasiliensis frequently recognized in primary peripheral blood mononuclear cell responses from sensitiz

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2913211

Scheme for ranking potential HLA-A2 binding peptides based on independent binding of individual peptide side-chains.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2913211

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2913211

Oligopeptide antigens of the angiotensin lineage compete for presentation by paraformaldehyde-treated accessory cells to T cells

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2913211

Binding of immunogenic peptides to Ia histocompatibility molecules

26 November 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2567.2010.03268.X

Prediction of peptide affinity to HLA DRB1*0401

21 January 2018

1 reference

12 December 2020

Capacity of intact proteins to bind to MHC class II molecules

1 reference

12 December 2020

Amino-terminal flanking residues determine the conformation of a peptide-class II MHC complex

1 reference

12 December 2020

MHC molecules protect T cell epitopes against proteolytic destruction

1 reference

12 December 2020

HLA supertypes and supermotifs: a functional perspective on HLA polymorphism

1 reference

12 December 2020

ProPred analysis and experimental evaluation of promiscuous T-cell epitopes of three major secreted antigens of Mycobacterium tuberculosis

1 reference

12 December 2020

Structural analysis of a peptide--HLA class II complex: identification of critical interactions for its formation and recognition by T cell receptor

1 reference

12 December 2020

Immunogenicity of peptides bound to MHC class I molecules depends on the MHC-peptide complex stability

1 reference

12 December 2020

The IMGT/HLA database

1 reference

12 December 2020

Computer-assisted prediction of HLA-DR binding and experimental analysis for human promiscuous Th1-cell peptides in the 24 kDa secreted lipoprotein (LppX) of Mycobacterium tuberculosis

1 reference

12 December 2020

10.1111/J.1365-2567.2010.03268.X

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20408898%20AND%20SRC:MED&resulttype=core&format=json

31 January 2020

PMC publication ID

2913211

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20408898%20AND%20SRC:MED&resulttype=core&format=json