M4T: a comparative protein structure modeling server. (Q30361845)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17517764%20AND%20SRC:MED&resulttype=core&format=json

30 December 2019

title

M4T: a comparative protein structure modeling server (English)

1 reference

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30 December 2019

author

Narcis Fernandez-Fuentes

1 reference

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30 December 2019

author name string

Carlos J Madrid-Aliste

1 reference

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30 December 2019

Brajesh Kumar Rai

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30 December 2019

J Eduardo Fajardo

1 reference

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30 December 2019

András Fiser

1 reference

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30 December 2019

language of work or name

English

0 references

publication date

21 May 2007

1 reference

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30 December 2019

published in

Nucleic Acids Research

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30 December 2019

volume

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30 December 2019

issue

Web Server issue

1 reference

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30 December 2019

page(s)

W363-8

1 reference

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Statistical potential for assessment and prediction of protein structures

30 December 2019

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933164

MMM: a sequence-to-structure alignment protocol.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933164

Multiple mapping method: a novel approach to the sequence-to-structure alignment problem in comparative protein structure modeling.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933164

FRankenstein becomes a cyborg: the automatic recombination and realignment of fold recognition models in CASP6.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933164

Protein structure modeling in the proteomics era.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933164

MUSCLE: a multiple sequence alignment method with reduced time and space complexity

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933164

Modeller: generation and refinement of homology-based protein structure models

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933164

Consensus alignment for reliable framework prediction in homology modeling.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933164

LGA: A method for finding 3D similarities in protein structures

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933164

The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933164

Reliability of assessment of protein structure prediction methods.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933164

Protein structure prediction and structural genomics

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933164

FUGUE: sequence-structure homology recognition using environment-specific substitution tables and structure-dependent gap penalties

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933164

Comparative protein structure modeling of genes and genomes

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933164

The PSIPRED protein structure prediction server

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933164

3 June 2018

The Protein Data Bank

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933164

Sustained performance of knowledge-based potentials in fold recognition.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933164

Evaluation of comparative protein structure modeling by MODELLER-3.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933164

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933164

Comparative protein modelling by satisfaction of spatial restraints

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933164

Recognition of errors in three-dimensional structures of proteins

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933164

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933164

Assessment of progress over the CASP experiments

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933164

In silico protein recombination: enhancing template and sequence alignment selection for comparative protein modelling

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933164

Tolerating some redundancy significantly speeds up clustering of large protein databases

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933164

Saturated BLAST: an automated multiple intermediate sequence search used to detect distant homology.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933164

26 November 2018

Identifiers

DOI

10.1093/NAR/GKM341

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17517764%20AND%20SRC:MED&resulttype=core&format=json

journals/nar/Fernandez-FuentesMRFF07

30 December 2019

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17517764%20AND%20SRC:MED&resulttype=core&format=json

30 December 2019

PubMed publication ID

17517764

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17517764%20AND%20SRC:MED&resulttype=core&format=json