A chromosome-based draft sequence of the hexaploid bread wheat (Triticum aestivum) genome (Q29029314)

26 March 2017

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language of work or name

English

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publication date

17 July 2014

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26 March 2017

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26 March 2017

volume

345

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26 March 2017

issue

6194

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26 March 2017

page(s)

1251788-1251788

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Climate trends and global crop production since 1980

26 March 2017

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Agricultural sustainability and intensive production practices

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Analysis of the bread wheat genome using whole-genome shotgun sequencing

21 April 2017

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https://api.crossref.org/works/10.1126/SCIENCE.1251788

Genome sequencing and analysis of the model grass Brachypodium distachyon

21 April 2017

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https://api.crossref.org/works/10.1126/SCIENCE.1251788

The Sorghum bicolor genome and the diversification of grasses

21 April 2017

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https://api.crossref.org/works/10.1126/SCIENCE.1251788

Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs

21 April 2017

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https://api.crossref.org/works/10.1126/SCIENCE.1251788

OrthoMCL: Identification of Ortholog Groups for Eukaryotic Genomes

21 April 2017

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https://api.crossref.org/works/10.1126/SCIENCE.1251788

The B73 Maize Genome: Complexity, Diversity, and Dynamics

21 April 2017

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Stochastic and epigenetic changes of gene expression in Arabidopsis polyploids

21 April 2017

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https://api.crossref.org/works/10.1126/SCIENCE.1251788

Genetic and epigenetic mechanisms for gene expression and phenotypic variation in plant polyploids

21 April 2017

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The advantages and disadvantages of being polyploid

21 April 2017

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https://api.crossref.org/works/10.1126/SCIENCE.1251788

TopHat: discovering splice junctions with RNA-Seq

21 April 2017

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https://api.crossref.org/works/10.1126/SCIENCE.1251788

Full-length transcriptome assembly from RNA-Seq data without a reference genome

21 April 2017

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https://api.crossref.org/works/10.1126/SCIENCE.1251788

OrfPredictor: predicting protein-coding regions in EST-derived sequences

21 April 2017

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https://api.crossref.org/works/10.1126/SCIENCE.1251788

InterProScan: protein domains identifier

21 April 2017

1 reference

https://api.crossref.org/works/10.1126/SCIENCE.1251788

Fast gapped-read alignment with Bowtie 2

21 April 2017

1 reference

https://api.crossref.org/works/10.1126/SCIENCE.1251788

Analysis of the genome sequence of the flowering plant Arabidopsis thaliana

21 April 2017

1 reference

https://api.crossref.org/works/10.1126/SCIENCE.1251788

Comparative proteogenomics: combining mass spectrometry and comparative genomics to analyze multiple genomes

21 April 2017

1 reference

https://api.crossref.org/works/10.1126/SCIENCE.1251788

Whole proteome analysis of post-translational modifications: applications of mass-spectrometry for proteogenomic annotation

21 April 2017

1 reference

https://api.crossref.org/works/10.1126/SCIENCE.1251788

Interactive Tree Of Life (iTOL): an online tool for phylogenetic tree display and annotation

21 April 2017

1 reference

https://api.crossref.org/works/10.1126/SCIENCE.1251788

A genomic perspective on protein families

21 April 2017

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https://api.crossref.org/works/10.1126/SCIENCE.1251788

Fast and accurate short read alignment with Burrows-Wheeler transform

21 April 2017

1 reference

https://api.crossref.org/works/10.1126/SCIENCE.1251788

The tomato genome sequence provides insights into fleshy fruit evolution

21 April 2017

1 reference

https://api.crossref.org/works/10.1126/SCIENCE.1251788

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

21 April 2017

1 reference

https://api.crossref.org/works/10.1126/SCIENCE.1251788

PAML: a program package for phylogenetic analysis by maximum likelihood

21 April 2017

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https://api.crossref.org/works/10.1126/SCIENCE.1251788

The Pfam protein families database

21 April 2017

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https://api.crossref.org/works/10.1126/SCIENCE.1251788

ABySS: a parallel assembler for short read sequence data

21 April 2017

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1251788

Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences

21 April 2017

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1251788

Accelerated Profile HMM Searches

21 April 2017

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1251788

Basic local alignment search tool

21 April 2017

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1251788

Solutions for a cultivated planet

21 April 2017

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1251788

The map-based sequence of the rice genome

21 April 2017

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1251788

Amino acid difference formula to help explain protein evolution

21 April 2017

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1251788

BLAT—The BLAST-Like Alignment Tool

21 April 2017

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1251788

Phylogenetic relationships of Triticum and Aegilops and evidence for the origin of the A, B, and D genomes of common wheat (Triticum aestivum).

23 May 2017

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1251788

Genome size and genome evolution in diploid Triticeae species

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1251788

Frequent gene movement and pseudogene evolution is common to the large and complex genomes of wheat, barley, and their relatives

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1251788

TriFLDB: a database of clustered full-length coding sequences from Triticeae with applications to comparative grass genomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1251788

Discovery and mapping of single feature polymorphisms in wheat using Affymetrix arrays

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1251788

Prevalence of gene expression additivity in genetically stable wheat allohexaploids

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1251788

A chromosome bin map of 16,000 expressed sequence tag loci and distribution of genes among the three genomes of polyploid wheat.

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1251788

Draft genome of the wheat A-genome progenitor Triticum urartu

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1251788

Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1251788

Discovery and development of exome-based, co-dominant single nucleotide polymorphism markers in hexaploid wheat (Triticum aestivum L.).

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1251788

Separating homeologs by phasing in the tetraploid wheat transcriptome

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1251788

Sequence-based mapping of the polyploid wheat genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1251788

Structural and functional partitioning of bread wheat chromosome 3B.

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1251788

Development of chromosome-specific BAC resources for genomics of bread wheat

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1251788

A new method to compute K-mer frequencies and its application to annotate large repetitive plant genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1251788

Epigenetic silencing of transposable elements: a trade-off between reduced transposition and deleterious effects on neighboring gene expression

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1251788

Subgenomic analysis of microRNAs in polyploid wheat

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1251788

Sorting the wheat from the chaff: identifying miRNAs in genomic survey sequences of Triticum aestivum chromosome 1AL.

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1251788

Comprehensive analysis of microRNA genomic loci identifies pervasive repetitive-element origins

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1251788

Megabase level sequencing reveals contrasted organization and evolution patterns of the wheat gene and transposable element spaces

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1251788

Function annotation of the rice transcriptome at single-nucleotide resolution by RNA-seq

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1251788

Transcriptome survey reveals increased complexity of the alternative splicing landscape in Arabidopsis

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1251788

Reticulate evolution of the rye genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1251788

Sequence-based analysis of translocations and inversions in bread wheat (Triticum aestivum L.).

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1251788

Multigenic phylogeny and analysis of tree incongruences in Triticeae (Poaceae).

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1251788

Reticulated origin of domesticated emmer wheat supports a dynamic model for the emergence of agriculture in the fertile crescent

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1251788

Ancient hybridizations among the ancestral genomes of bread wheat

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1251788

Molecular characterization of Ph1 as a major chromosome pairing locus in polyploid wheat

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1251788

Gene content and virtual gene order of barley chromosome 1H.

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1251788

Cereal Genome Evolution: Grasses, line up and form a circle

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1251788

A 4-gigabase physical map unlocks the structure and evolution of the complex genome of Aegilops tauschii, the wheat D-genome progenitor

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1251788

Anchoring and ordering NGS contig assemblies by population sequencing (POPSEQ).

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1251788

Reconstruction of the synthetic W7984 x Opata M85 wheat reference population

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1251788

Evolution by gene duplication: an update

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1251788

Eucaryotic genome evolution through the spontaneous duplication of large chromosomal segments

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1251788

Reference genome sequence of the model plant Setaria

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1251788

The Rice Annotation Project Database (RAP-DB): 2008 update

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1251788

Allopolyploidy-induced rapid genome evolution in the wheat (Aegilops-Triticum) group

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1251788

Rapid, repeated, and clustered loss of duplicate genes in allopolyploid plant populations of independent origin.

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1251788

Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1251788

Whole-genome sequencing of multiple Arabidopsis thaliana populations.

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1251788

Differentiation of the maize subgenomes by genome dominance and both ancient and ongoing gene loss

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1251788

Genomic expression dominance in allopolyploids

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1251788

Reciprocal silencing, transcriptional bias and functional divergence of homeologs in polyploid cotton (gossypium)

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1251788

Nonadditive expression of homoeologous genes is established upon polyploidization in hexaploid wheat

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1251788

Genome interplay in the grain transcriptome of hexaploid bread wheat

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1251788

Homoeolog expression bias and expression level dominance in allopolyploid cotton

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1251788

Genes duplicated by polyploidy show unequal contributions to the transcriptome and organ-specific reciprocal silencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1251788

Biased gene fractionation and dominant gene expression among the subgenomes of Brassica rapa

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1251788

Evolution of duplicate gene expression in polyploid and hybrid plants

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1251788

Structure-function analysis of the NB-ARC domain of plant disease resistance proteins.

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1251788

Genome-wide classification and expression analysis of MYB transcription factor families in rice and Arabidopsis

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1251788

Positional cloning of the wheat vernalization gene VRN1

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1251788

The pseudo-response regulator Ppd-H1 provides adaptation to photoperiod in barley

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1251788

Copy number variation affecting the Photoperiod-B1 and Vernalization-A1 genes is associated with altered flowering time in wheat (Triticum aestivum).

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1251788

Optimizing Illumina next-generation sequencing library preparation for extremely AT-biased genomes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1251788

Sequencing and assembly of low copy and genic regions of isolated Triticum aestivum chromosome arm 7DS.

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1251788

Sequencing wheat chromosome arm 7BS delimits the 7BS/4AL translocation and reveals homoeologous gene conservation

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1251788

Next-generation survey sequencing and the molecular organization of wheat chromosome 6B.

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1251788

Identification of novel transcripts in annotated genomes using RNA-Seq

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1251788

Protein families and TRIBES in genome sequence space

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1251788

novoMIR : De Novo Prediction of MicroRNA‐Coding Regions in a Single Plant‐Genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1251788

PsRobot: a web-based plant small RNA meta-analysis toolbox

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1251788

Flow karyotyping and chromosome sorting in bread wheat ( Triticum aestivum L.).

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1251788

Flow cytometric chromosome sorting in plants: the next generation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1251788

A novel resource for genomics of Triticeae: BAC library specific for the short arm of rye (Secale cereale L.) chromosome 1R (1RS).

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1251788

Deciphering the complexities of the wheat flour proteome using quantitative two-dimensional electrophoresis, three proteases and tandem mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1251788

An automated proteogenomic method uses mass spectrometry to reveal novel genes in Zea mays

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1251788

Proteogenomics of Pristionchus pacificus reveals distinct proteome structure of nematode models

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1251788

A high-quality catalog of the Drosophila melanogaster proteome

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1251788

Proteogenomics to discover the full coding content of genomes: a computational perspective

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1251788

Proteogenomic mapping as a complementary method to perform genome annotation

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1251788

Proteomics studies confirm the presence of alternative protein isoforms on a large scale

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1251788

Proteogenomic database construction driven from large scale RNA-seq data

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1251788

InsPecT: identification of posttranslationally modified peptides from tandem mass spectra

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1251788

Spectral probabilities and generating functions of tandem mass spectra: a strike against decoy databases

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1251788

Discovery and revision of Arabidopsis genes by proteogenomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1251788

Genome-wide comparative diversity uncovers multiple targets of selection for improvement in hexaploid wheat landraces and cultivars

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1251788

A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1251788

Development of high-density genetic maps for barley and wheat using a novel two-enzyme genotyping-by-sequencing approach

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1251788

AgBase: supporting functional modeling in agricultural organisms.

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1251788

Map-based isolation of the leaf rust disease resistance gene Lr10 from the hexaploid wheat (Triticum aestivum L.) genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1251788

A pseudo-response regulator is misexpressed in the photoperiod insensitive Ppd-D1a mutant of wheat (Triticum aestivum L.).

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1251788

Two transcription factors, DREB1 and DREB2, with an EREBP/AP2 DNA binding domain separate two cellular signal transduction pathways in drought- and low-temperature-responsive gene expression, respectively, in Arabidopsis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1251788

Arabidopsis AtMYC2 (bHLH) and AtMYB2 (MYB) function as transcriptional activators in abscisic acid signaling

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1251788

Ectopic expression of a wheat MYB transcription factor gene, TaMYB73, improves salinity stress tolerance in Arabidopsis thaliana

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1251788

A wheat HMW glutenin subunit gene reveals a highly repeated structure

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1251788

Data mining for miRNAs and their targets in the Triticeae

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1251788

Identification of conserved Aquilegia coerulea microRNAs and their targets

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1251788

Conservation and divergence of plant microRNA genes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1251788

HHMMiR: efficient de novo prediction of microRNAs using hierarchical hidden Markov models

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1251788

Diversity arrays technology (DArT) for high-throughput profiling of the hexaploid wheat genome.

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1251788

A high-density consensus map of barley linking DArT markers to SSR, RFLP and STS loci and agricultural traits

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1251788

A high-density consensus map of A and B wheat genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1251788

Sequence-based marker development in wheat: advances and applications to breeding

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1251788

Cadmium uptake and partitioning in durum wheat during grain filling

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1251788

Scoring and Validation of Tandem MS Peptide Identification Methods

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1251788

The Ph1 locus is needed to ensure specific somatic and meiotic centromere association

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1251788

An integrated DArT-SSR linkage map of durum wheat

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1251788

Next-generation sequencing and syntenic integration of flow-sorted arms of wheat chromosome 4A exposes the chromosome structure and gene content

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1251788

Comparative analysis of syntenic genes in grass genomes reveals accelerated rates of gene structure and coding sequence evolution in polyploid wheat

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1251788

Nonrandomness of point mutation as reflected in nucleotide substitutions in pseudogenes and its evolutionary implications

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1251788

A physical, genetic and functional sequence assembly of the barley genome

21 January 2018

1 reference

COCI

https://opencitations.net/index/coci/api/v1/citations/10.1038/NATURE11543

15 July 2023

Identifiers

DOI

10.1126/SCIENCE.1251788

2 references

26 March 2017

Consolidated OpenCitations Corpus – April 2017

1 reference

Consolidated OpenCitations Corpus – April 2017

PubMed publication ID

25035500

1 reference

Consolidated OpenCitations Corpus – April 2017