Three Tnt1 subfamilies show different stress-associated patterns of expression in tobacco. Consequences for retrotransposon control and evolution in plants (Q28351353)

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English	Three Tnt1 subfamilies show different stress-associated patterns of expression in tobacco. Consequences for retrotransposon control and evolution in plants	scientific article

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scholarly article

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11 November 2019

Three Tnt1 subfamilies show different stress-associated patterns of expression in tobacco. Consequences for retrotransposon control and evolution in plants (English)

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11553749%20AND%20SRC:MED&resulttype=core&format=json

11 November 2019

retrotransposon

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Josep M. Casacuberta

4

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11 November 2019

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T Beguiristain

1

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11 November 2019

M A Grandbastien

2

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11 November 2019

P Puigdomènech

3

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11 November 2019

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1 September 2001

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11 November 2019

Plant Physiology

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11 November 2019

127

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11 November 2019

1

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11 November 2019

212-221

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11 November 2019

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=117977

20 March 2017

The neighbor-joining method: a new method for reconstructing phylogenetic trees

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=117977

20 March 2017

Coordinated plant defense responses in Arabidopsis revealed by microarray analysis.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=117977

29 September 2017

Retrolycl-1, a member of the tntl retrotransposon super-family in the Lycopersicon peruvianum genome.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=117977

29 September 2017

Nitric oxide and salicylic acid signaling in plant defense

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=117977

29 September 2017

Plant retrotransposons

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=117977

29 September 2017

Jasmonate and salicylate as global signals for defense gene expression

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=117977

29 September 2017

Extreme structural heterogeneity among the members of a maize retrotransposon family.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=117977

29 September 2017

Turned on by stress. Plant retrotransposons

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=117977

29 September 2017

The BARE-1 retrotransposon is transcribed in barley from an LTR promoter active in transient assays.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=117977

29 September 2017

Replication infidelity during a single cycle of Ty1 retrotransposition

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=117977

29 September 2017

Activation of tobacco retrotransposons during tissue culture.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=117977

29 September 2017

Characterisation of LTR sequences involved in the protoplast specific expression of the tobacco Tnt1 retrotransposon.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=117977

29 September 2017

Sequence variability within the tobacco retrotransposon Tnt1 population.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=117977

29 September 2017

Transcription and reverse transcription of retrotransposons

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=117977

29 September 2017

Specific expression of the tobacco Tnt1 retrotransposon in protoplasts

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=117977

29 September 2017

The auxin, hydrogen peroxide and salicylic acid induced expression of the Arabidopsis GST6 promoter is mediated in part by an ocs element

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=117977

2 June 2018

A 13-bp cis-regulatory element in the LTR promoter of the tobacco retrotransposon Tto1 is involved in responsiveness to tissue culture, wounding, methyl jasmonate and fungal elicitors

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=117977

2 June 2018

Tempo and mode of Ty element evolution in Saccharomyces cerevisiae.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=117977

2 June 2018

The evolutionary analysis of the Tnt1 retrotransposon in Nicotiana species reveals the high variability of its regulatory sequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=117977

2 June 2018

The expression of the tobacco Tnt1 retrotransposon is linked to plant defense responses.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=117977

2 June 2018

Quasispecies in retrotransposons: a role for sequence variability in Tnt1 evolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=117977

2 June 2018

Do Plants Have a One-Way Ticket to Genomic Obesity?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=117977

27 November 2018

An as-1-like motif controls the level of expression of the gene for the pathogenesis-related protein 1a from tobacco

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=117977

27 November 2018

The promoter of the tobacco Tnt1 retrotransposon is induced by wounding and by abiotic stress.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=117977

27 November 2018

Pathogen-induced systemic activation of a plant defensin gene in Arabidopsis follows a salicylic acid-independent pathway

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=117977

27 November 2018

Fumonisin B1-induced cell death in arabidopsis protoplasts requires jasmonate-, ethylene-, and salicylate-dependent signaling pathways

1 reference

https://pubmed.ncbi.nlm.nih.gov/11553749

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Retrotransposon BARE-1 and Its Role in Genome Evolution in the Genus Hordeum

1 reference

https://pubmed.ncbi.nlm.nih.gov/11553749

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Yeast retrotransposons: finding a nice quiet neighborhood

1 reference

https://pubmed.ncbi.nlm.nih.gov/11553749

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Retrolyc1 subfamilies defined by different U3 LTR regulatory regions in the Lycopersicon genus

1 reference

https://pubmed.ncbi.nlm.nih.gov/11553749

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The bifactorial endosperm box of gamma-zein gene: characterisation and function of the Pb3 and GZM cis-acting elements

1 reference

https://pubmed.ncbi.nlm.nih.gov/11553749

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Coordinated activation of as-1-type elements and a tobacco glutathione S-transferase gene by auxins, salicylic acid, methyl-jasmonate and hydrogen peroxide

1 reference

https://pubmed.ncbi.nlm.nih.gov/11553749

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Involvement of lipoxygenase-dependent production of fatty acid hydroperoxides in the development of the hypersensitive cell death induced by cryptogein on tobacco leaves

1 reference

https://pubmed.ncbi.nlm.nih.gov/11553749

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Tobacco transcription factor TGA2.2 is the main component of as-1-binding factor ASF-1 and is involved in salicylic acid- and auxin-inducible expression of as-1-containing target promoters

1 reference

https://pubmed.ncbi.nlm.nih.gov/11553749

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Structure and activity of proteins from pathogenic fungi Phytophthora eliciting necrosis and acquired resistance in tobacco

1 reference

https://pubmed.ncbi.nlm.nih.gov/11553749

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

In vivo characterization of transcriptional regulatory sequences involved in the defence-associated expression of the tobacco retrotransposon Tnt1

1 reference

https://pubmed.ncbi.nlm.nih.gov/11553749

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Expression of the tobacco Tnt1 retrotransposon promoter in heterologous species

1 reference

https://pubmed.ncbi.nlm.nih.gov/11553749

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1104/PP.127.1.212

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Europe PubMed Central

PubMed publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11553749%20AND%20SRC:MED&resulttype=core&format=json

11 November 2019

PMC publication ID

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PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11553749%20AND%20SRC:MED&resulttype=core&format=json

11 November 2019

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