Triplex targeted genomic crosslinks enter separable deletion and base substitution pathways (Q24816234)

4 July 2017

title

Triplex targeted genomic crosslinks enter separable deletion and base substitution pathways (English)

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4 July 2017

Sally Richards

1 reference

4 July 2017

Su-Ting Liu

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4 July 2017

Alokes Majumdar

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4 July 2017

Ji-Lan Liu

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4 July 2017

Rodney S Nairn

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4 July 2017

Michel Bernier

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4 July 2017

Veronica Maher

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4 July 2017

Michael M Seidman

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4 July 2017

language of work or name

English

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publication date

25 September 2005

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4 July 2017

published in

Nucleic Acids Research

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4 July 2017

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4 July 2017

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4 July 2017

page(s)

5382-5393

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Nucleotide excision repair- and polymerase eta-mediated error-prone removal of mitomycin C interstrand cross-links

4 July 2017

cites work

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7 April 2017

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Reconstitution of human excision nuclease with recombinant XPF-ERCC1 complex

7 April 2017

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Xeroderma pigmentosum group F caused by a defect in a structure-specific DNA repair endonuclease

7 April 2017

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Removal of psoralen interstrand cross-links from DNA of Escherichia coli: mechanism and genetic control

7 April 2017

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The structure-specific endonuclease Ercc1-Xpf is required to resolve DNA interstrand cross-link-induced double-strand breaks

7 April 2017

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7 April 2017

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Psoralen interstrand cross-link repair is specifically altered by an adjacent triple-stranded structure

7 April 2017

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Importance of clustered 2'-O-(2-aminoethyl) residues for the gene targeting activity of triple helix-forming oligonucleotides

28 September 2017

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Repair kinetics of genomic interstrand DNA cross-links: evidence for DNA double-strand break-dependent activation of the Fanconi anemia/BRCA pathway

28 September 2017

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Pathways for mitotic homologous recombination in mammalian cells

28 September 2017

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The potential for gene repair via triple helix formation

28 September 2017

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Cell cycle modulation of gene targeting by a triple helix-forming oligonucleotide.

28 September 2017

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hREV3 is essential for error-prone translesion synthesis past UV or benzo[a]pyrene diol epoxide-induced DNA lesions in human fibroblasts

28 September 2017

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Repair of DNA interstrand crosslinks: molecular mechanisms and clinical relevance.

28 September 2017

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hMutSbeta is required for the recognition and uncoupling of psoralen interstrand cross-links in vitro

28 September 2017

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Recombination at double-strand breaks and DNA ends: conserved mechanisms from phage to humans.

28 September 2017

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Targeted gene knockout by 2'-O-aminoethyl modified triplex forming oligonucleotides

28 September 2017

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Werner syndrome cells are sensitive to DNA cross-linking drugs

28 September 2017

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Artemis, a novel DNA double-strand break repair/V(D)J recombination protein, is mutated in human severe combined immune deficiency.

28 September 2017

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Involvement of nucleotide excision repair in a recombination-independent and error-prone pathway of DNA interstrand cross-link repair

28 September 2017

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DNA replication is required To elicit cellular responses to psoralen-induced DNA interstrand cross-links.

28 September 2017

1 reference

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Defining the roles of nucleotide excision repair and recombination in the repair of DNA interstrand cross-links in mammalian cells

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1236719

Repair of an interstrand DNA cross-link initiated by ERCC1-XPF repair/recombination nuclease.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1236719

Repair of intermediate structures produced at DNA interstrand cross-links in Saccharomyces cerevisiae

28 September 2017

1 reference

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DNA interstrand cross-links induce futile repair synthesis in mammalian cell extracts

28 September 2017

1 reference

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The establishment of telomerase-immortalized cell lines representing human chromosome instability syndromes

28 September 2017

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Targeting DNA with triplexes

28 September 2017

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Psoralen photo-cross-linking by triplex-forming oligonucleotides at multiple sites in the human rhodopsin gene

28 September 2017

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Chromosomal double-strand breaks introduced in mammalian cells by expression of I-Sce I endonuclease

28 September 2017

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Interstrand cross-links induce DNA synthesis in damaged and undamaged plasmids in mammalian cell extracts

28 September 2017

1 reference

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DNA polymerase II (polB) is involved in a new DNA repair pathway for DNA interstrand cross-links in Escherichia coli

28 September 2017

1 reference

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Initiation of DNA interstrand cross-link repair in humans: the nucleotide excision repair system makes dual incisions 5' to the cross-linked base and removes a 22- to 28-nucleotide-long damage-free strand

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1236719

Replication timing properties of the human HPRT locus on active, inactive and reactivated X chromosomes.

28 September 2017

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Survival, mutagenesis, and host cell reactivation in a Chinese hamster ovary cell ERCC1 knock-out mutant

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1236719

Mutagenesis in mammalian cells induced by triple helix formation and transcription-coupled repair

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1236719

Mutagenesis by third-strand-directed psoralen adducts in repair-deficient human cells: high frequency and altered spectrum in a xeroderma pigmentosum variant

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1236719

Targeted mutagenesis of DNA using triple helix-forming oligonucleotides linked to psoralen

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1236719

Targeted mutagenesis in mammalian cells mediated by intracellular triple helix formation

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1236719

A UV-responsive G2 checkpoint in rodent cells

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1236719

Altered Repair of Targeted Psoralen Photoadducts in the Context of an Oligonucleotide-mediated Triple Helix

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1236719

Deletion of the diploid dihydrofolate reductase locus from cultured mammalian cells

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1236719

Repair of DNA Containing Interstrand Crosslinks in Escherichia coli: Sequential Excision and Recombination

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1236719

Incision by UvrABC excinuclease is a step in the path to mutagenesis by psoralen crosslinks in Escherichia coli

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1236719

Reversible G1 arrest in the cell cycle of human lymphoid cell lines by dimethyl sulfoxide

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1236719

Sequence-specific photo-induced cross-linking of the two strands of double-helical DNA by a psoralen covalently linked to a triple helix-forming oligonucleotide

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1236719

Nucleotide excision repair genes as determinants of cellular sensitivity to cyclophosphamide analogs

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1236719

The mutagenic processing of psoralen photolesions leaves a highly specific signature at an endogenous human locus

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1236719

Transcription-coupled repair of psoralen cross-links but not monoadducts in Chinese hamster ovary cells

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1236719

DNA interstrand cross-link repair in the Saccharomyces cerevisiae cell cycle: overlapping roles for PSO2 (SNM1) with MutS factors and EXO1 during S phase

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1236719

Defective DNA cross-link removal in Chinese hamster cell mutants hypersensitive to bifunctional alkylating agents.

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1236719

Differential repair and replication of damaged DNA in ribosomal RNA genes in different CHO cell lines

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1236719

An effect of cell-cycle position on ultraviolet-light-induced mutagenesis in Chinese hamster ovary cells.

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1236719

In vitro repair of psoralen-DNA cross-links by RecA, UvrABC, and the 5'-exonuclease of DNA polymerase I.

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1236719

Interstrand crosslink-induced homologous recombination carries an increased risk of deletions and insertions.

19 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1236719

The CSB protein actively wraps DNA.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1236719

DNA repair defects channel interstrand DNA cross-links into alternate recombinational and error-prone repair pathways

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1236719

Induction of DNA replication-mediated double strand breaks by psoralen DNA interstrand cross-links

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1236719

Minimum number of 2'-O-(2-aminoethyl) residues required for gene knockout activity by triple helix forming oligonucleotides

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1236719

S. cerevisiae has three pathways for DNA interstrand crosslink repair

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1236719

Evidence for a recombination-independent pathway for the repair of DNA interstrand cross-links based on a site-specific study with nitrogen mustard.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1236719

Mutation specificity of 8-methoxypsoralen plus two doses of UVA irradiation in the hprt gene in diploid human fibroblasts.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1236719

Asymmetric recognition of psoralen interstrand crosslinks by the nucleotide excision repair and the error-prone repair pathways

28 November 2018

1 reference

12 December 2020

MSH3 deficiency is not sufficient for a mutator phenotype in Chinese hamster ovary cells

1 reference

12 December 2020

Single cell gel electrophoresis: detection of DNA damage at different levels of sensitivity

1 reference

12 December 2020

Specific mutations induced by triplex-forming oligonucleotides in mice

1 reference

12 December 2020

Mapping of an origin of DNA replication near the transcriptional promoter of the human HPRT gene

1 reference

12 December 2020

Dual Recognition of Double-Stranded DNA by 2'-Aminoethoxy-Modified Oligonucleotides

1 reference

12 December 2020

Targeted gene knockout mediated by triple helix forming oligonucleotides

1 reference

12 December 2020

Identifiers

DOI

10.1093/NAR/GKI851

1 reference

4 July 2017

1 reference

4 July 2017

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