Discovery of a dipeptide epimerase enzymatic function guided by homology modeling and virtual screening (Q24646625)

From Wikidata

Jump to navigation Jump to search

scientific article

Discovery of a Dipeptide Epimerase Enzymatic Function Guided by Homology Modeling and Virtual Screening

Language	Label	Description	Also known as
English	Discovery of a dipeptide epimerase enzymatic function guided by homology modeling and virtual screening	scientific article	Discovery of a Dipeptide Epimerase Enzymatic Function Guided by Homology Modeling and Virtual Screening

Statements

scholarly article

0 references

Discovery of a dipeptide epimerase enzymatic function guided by homology modeling and virtual screening (English)

0 references

structural biology

0 references

virtual screening

1 reference

based on heuristic

inferred from title

7

0 references

Matthew P. Jacobson

9

object named as

Matthew P Jacobson

0 references

Margaret E Glasner

object named as

Margaret E Glasner

5

0 references

object named as

Heidi J Imker

2

0 references

Patricia Babbitt

6

object named as

Patricia C Babbitt

0 references

8

object named as

John A Gerlt

0 references

author name string

Chakrapani Kalyanaraman

1

0 references

Alexander A Fedorov

3

0 references

Elena V Fedorov

4

0 references

language of work or name

0 references

publication date

12 November 2008

0 references

0 references

16

0 references

11

0 references

1668-77

0 references

Structure-based activity prediction for an enzyme of unknown function

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2714228

7 April 2017

MUSCLE: multiple sequence alignment with high accuracy and high throughput

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2714228

7 April 2017

Melamine deaminase and atrazine chlorohydrolase: 98 percent identical but functionally different

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2714228

7 April 2017

Prediction and assignment of function for a divergent N-succinyl amino acid racemase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2714228

7 April 2017

BALBES: a molecular-replacement pipeline

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2714228

7 April 2017

Automated refinement of protein models

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2714228

7 April 2017

MrBayes 3: Bayesian phylogenetic inference under mixed models

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2714228

7 April 2017

A general empirical model of protein evolution derived from multiple protein families using a maximum-likelihood approach

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2714228

7 April 2017

Crystallography & NMR System: A New Software Suite for Macromolecular Structure Determination

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2714228

7 April 2017

Parallel Metropolis coupled Markov chain Monte Carlo for Bayesian phylogenetic inference

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2714228

7 April 2017

Diffraction methods for biological macromolecules. Interactive computer graphics: FRODO

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2714228

7 April 2017

Aryldithioethyloxycarbonyl (Ardec): a new family of amine protecting groups removable under mild reducing conditions and their applications to peptide synthesis.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2714228

27 September 2017

Leveraging enzyme structure-function relationships for functional inference and experimental design: the structure-function linkage database

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2714228

27 September 2017

Novel human lipoxygenase inhibitors discovered using virtual screening with homology models

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2714228

27 September 2017

Virtual screening against highly charged active sites: identifying substrates of alpha-beta barrel enzymes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2714228

27 September 2017

An algorithm for constraint-based structural template matching: application to 3D templates with statistical analysis.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2714228

27 September 2017

Functional sites in protein families uncovered via an objective and automated graph theoretic approach

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2714228

27 September 2017

The atrazine catabolism genes atzABC are widespread and highly conserved.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2714228

27 September 2017

Molecular docking for substrate identification: the short-chain dehydrogenases/reductases

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2714228

28 November 2018

Predicting substrates by docking high-energy intermediates to enzyme structures

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2714228

28 November 2018

Evolution of structure and function in the o-succinylbenzoate synthase/N-acylamino acid racemase family of the enolase superfamily

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2714228

28 November 2018

Structure and activity analyses of Escherichia coli K-12 NagD provide insight into the evolution of biochemical function in the haloalkanoic acid dehalogenase superfamily

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2714228

28 November 2018

Automated discovery of 3D motifs for protein function annotation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2714228

28 November 2018

Representing structure-function relationships in mechanistically diverse enzyme superfamilies.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2714228

28 November 2018

Evolution of enzymatic activities in the enolase superfamily: structure of a substrate-liganded complex of the L-Ala-D/L-Glu epimerase from Bacillus subtilis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2714228

28 November 2018

Ligand selectivity and competition between enzymes in silico

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2714228

28 November 2018

How Well is Enzyme Function Conserved as a Function of Pairwise Sequence Identity?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2714228

28 November 2018

Evolution of enzymatic activities in the enolase superfamily: functional assignment of unknown proteins in Bacillus subtilis and Escherichia coli as L-Ala-D/L-Glu epimerases

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2714228

28 November 2018

Catalytic plasticity of fatty acid modification enzymes underlying chemical diversity of plant lipids

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2714228

28 November 2018

Structure-based Active Site Profiles for Genome Analysis and Functional Family Subclassification

1 reference

https://pubmed.ncbi.nlm.nih.gov/19000819

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Comparative Protein Structure Modeling and its Applications to Drug Discovery

1 reference

https://api.crossref.org/works/10.1016%2FJ.STR.2008.08.015

7 January 2021

based on heuristic

inferred from DOI database lookup

Processing of X-ray diffraction data collected in oscillation mode

1 reference

https://api.crossref.org/works/10.1016%2FJ.STR.2008.08.015

7 January 2021

based on heuristic

inferred from DOI database lookup

Identifiers

10.1016/J.STR.2008.08.015

0 references

PMC publication ID

0 references

PubMed publication ID

0 references

ResearchGate publication ID

0 references

Sitelinks

Wikipedia(0 entries)

Wikibooks(0 entries)

Wikinews(0 entries)

Wikiquote(0 entries)

Wikisource(0 entries)

Wikiversity(0 entries)

Wikivoyage(0 entries)

Wiktionary(0 entries)

Multilingual sites(0 entries)

Retrieved from "https://www.wikidata.org/w/index.php?title=Q24646625&oldid=1510854480"