Principles of Epidemiology
Principles of Epidemiology
1.2.2 Frequency
This shows that epidemiology is mainly a quantitative science. Epidemiology is concerned with
the frequency (occurrence) of diseases and other health related conditions. Frequency of diseases
is measured by morbidity and mortality rates.
1.2.4 Distribution
Distribution refers to the geographical distribution of diseases, the distribution in time, and
distribution by type of persons affected.
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1.2.5 Determinants
Determinants are factors which determine whether or not a person will get a disease.
1.2.6. Application of the studies to the promotion of health and to the prevention and
control of health problems
This means the whole aim in studying the frequency, distribution, and determinants of disease is
to identify effective disease prevention and control strategies.
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2. To monitor continuously over a period of time the change of health in a community: (for
example, the effect of a vaccination program, health education, nutritional
supplementation).
3. To practice surveillance for a specific disease in order to be able to act quickly and so
cut short any outbreak (example cholera).
4. To investigate an outbreak of a communicable disease, analyze the reasons for it, plan a
feasible remedy, and monitor the effects of the remedy on the outbreak.
5. To plan effective health services: Effective services, interventions and remedies all
depend on accurate community data.
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2 EPIDEMIOLOGICAL TERMS AND CONCEPTS
Some epidemiological terms are enumerated below:
3.3 Carrier
A carrier is a person, animal, or arthropod who harbors a specific infectious agent in the absence
of clinical illness with or without a detectable immune response. The carrier state may reflect
carriage of the organism in the incubation period before clinical symptoms appear, during an
apparent or inapparent infection (healthy or asymptomatic carrier), or following recovery from
illness; it may be of short or long duration (chronic carrier), and it may be intermittent or
continuous. Carriers may spread the infectious agent to others.
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3.6 Chemoprophylaxis
Administration of a chemical or antibiotic to prevent infection or to prevent the development of
disease in a person already infected.
3.7 Colonization
Multiplication of an organism on a body surface (e.g., skin, epithelium, mucus membrane)
without evoking a tissue or immune response.
3.9 Endemic
This term denotes the constant or usual presence of an infection or disease in a community.
3.10 Epidemic
An epidemic or outbreak is said to exist when an unusual number of cases of a disease occur in a
given time period and geographic area as compared with the previous experience with that
disease in that area. For diseases already present in the community, it is necessary to know the
number of existing cases (prevalence) as well as new cases (incidence) to determine whether an
increase has occurred.
3.11 Host
A person, animal (including birds), or arthropod in which infectious agents subsist or infect
under natural conditions.
3.12 Immunity
The specific resistance to an infectious agent resulting from humoral and local antibodies and
from cell mediated responses constitutes immunity. Immunity may be acquired through natural
infection, by active immunization, by transfer of immune factors via the placenta, or by passive
immunization with antibodies from another person or animal. The immune state is relative and
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not absolute, is governed largely through genetic control, and may be altered by disease- or drug-
induced immunosuppression.
3.13 Immunodeficiency
A state representing impairment of the immune system of the host that affects its ability to
respond to a foreign antigen. This may result from an inherited defect, or an acquired one such as
a result of the disease itself, or of immunosuppressive drugs or an infectious agent that depresses
the immune system. The human immunodeficiency viruses (HIV-1 and HIV-2) are the major
examples of the latter.
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3.16 Index case
This is the index or primary case of an illness in a family, group, institution, or community that
may serve as a source of infection to others.
3.17 Infection
Infection represents the deposition, colonization, and multiplication of a microorganism in a host
and is usually accompanied by an immune response. Infection may occur with or without clinical
illness.
3.18 Isolation
This is a term applied to the separation of infected persons in such places and/or under such
conditions as to prevent contact or airborne transmission of the infectious agent to others during
the period of communicability.
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3.22 Pathogenicity
The ability of an infectious agent to produce disease in a susceptible host. Some nonpathogenic
agents can become pathogenic in an immunocompromised host such as persons infected with
HIV.
3.24 Quarantine
The restriction of persons or animals exposed to an infected source during the incubation period
for that disease to observe if the disease develops in order that other persons will not be exposed
to the infectious agent during that period.
3.25 Reservoir
A person, animal, soil, or other environment in which an infectious agent normally exists and
multiplies and which can be a source of infection to other hosts.
3.26 Surveillance
As concerns public health, surveillance is the systematic collection of data pertaining to the
occurrences of specific diseases or health-related conditions, the analysis and interpretation of
these data, and the dissemination of consolidated and processed information to contributors to
the program and other interested persons for purposes of control and/or prevention
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3.27 Susceptibility
A state in which a person or animal is capable of being infected with a microorganism. The lack
of specific protective antibody usually indicates susceptibility to that agent, although reactivation
or reinfection to some agents may occur in the presence of antibody.
3.28 Transmission
The mechanism by which an infectious agent is spread to another host.
3.29 Virulence
A measure of the degree of pathogenicity of an infectious agent as reflected by the severity of the
disease produced and its ability to invade the tissues of the host.
3.30 Zoonosis
An infection or infectious disease transmissible under natural conditions from animals to man. It
may be endemic (enzootic) or epidemic (epizootic).
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3. DISEASE CAUSATION
The “cause of disease” can be defined as an event, condition, characteristic or a combination of
these factors which plays an important role in producing the disease. The causes of disease can
be classified in to two categories:
1. Primary causes: These are the factors which are necessary for a disease to occur, in
whose absence the disease will not occur. The term “etiologic agent” can also be used to
represent the primary causes of diseases. For example Mycobacterium tuberculosis is the
primary cause (etiologic agent) of pulmonary tuberculosis.
2. Risk factors (contributing, predisposing, or aggravating factors): These are not the
necessary causes of disease but they are important for a disease to occur. A factor
associated with an increased occurrence of a disease is a risk factor for the exposed
group. Risk factors could be related to the agent, the host and the environment.
The “etiology of a disease” is the sum total of all the factors (primary causes and risk factors)
which contribute to the occurrence of the disease. It is the interaction of the agent, the host, and
the environment which determines whether or not a disease develops, and this can be illustrated
using the epidemiologic triangle (Figure 3.1).
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The epidemiologic triangle depicts the relationship among three key factors in the occurrence of
disease or injury: agent, environment and host. An agent is a factor whose presence or absence is
necessary for a particular disease or injury to occur. The environment includes all external
factors, other than the agent, that can influence health. From the perspective of epidemiologic
triangle, the host, agent and environment can coexist harmoniously. Disease and injury occur
only when there is altered equilibrium between them.
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4. LEVELS OF PREVENTION
The natural history of diseases and it different stages will initially be elucidated as a prelude to
understanding the levels of disease prevention.
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3. Rabies has a relatively short but severe clinical stage and almost always results in death.
4. Diabetes Mellitus has a relatively longer clinical stage and eventually results in death if
the patient is not properly treated.
A schematic diagram of the natural history of diseases and their expected outcomes is
shown in Figure 4.1.
Figure 4.1: Schematic diagram of the natural history of diseases and their expected outcomes
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4.2 Levels of Disease Prevention
The major purpose in investigating the epidemiology of diseases is to learn how to prevent and
control them. Disease prevention means to interrupt or slow the progression of disease.
Epidemiology plays a central role in disease prevention by identifying those modifiable causes.
The three levels of prevention are briefly described below.
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4.2.2 Secondary prevention
The objective of secondary prevention is to stop or slow the progression of disease so as to
prevent or limit permanent damage. Secondary prevention can be achieved through detecting
people who already have the disease as early as possible and treat them. It is carried out before
the person is permanently damaged. Examples are the prevention of blindness from Trachoma,
as well as the early detection and treatment of breast cancer to prevent its progression to the
invasive stage, which is the severe form of the disease.
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5. EPIDEMIOLOGIC TRANSITION
The epidemiologic transition describes changing patterns of population distributions in relation
to changing patterns of mortality, fertility, life expectancy and leading causes of death. The
perspective has its origins in demography, but finds a compatible conceptual home in public
health and epidemiology in particular. There are two major components of the transition: (1)
changes in population growth trajectories and composition, especially in the age distribution
from younger to older, and (2) changes in patterns of mortality, including increasing life
expectancy and reordering of the relative importance of different causes of death. The
“epidemiological transition theory” was first formulated in a paper published by Abdel Omran in
1971. Omran’s formulation of the theory consisted of five propositions.
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5.1.2.1 The first transition
The first transition phase, called the “Age of Pestilence and Famine”, is characterized by high
and fluctuating mortality rates, variable life expectancy with low average life span, and periods
of population growth that are not sustained. The earliest transition dates to pre-history (Neolithic
period, approximately 10,000 years ago) across geographically widely separated cultures. The
transitions were a result of the transformation from hunter-gatherer societies to agrarian
societies, with more settled life required in order to tend cultivated crops and domesticated
animals. The change in patterns of livelihood and living conditions also meant changes in
population size and density and daily life in closer proximity to animals. The reduction in human
and animal migration created a new kind of ecological imbalance. There was an increase in
infectious diseases as a result of exposure to human and animal waste and contaminated water
and the reciprocal transmission of organisms between human and animal hosts. The disease
patterns that emerged were determined by increasing microbial exposures, dietary deficiencies
because the food supply, though perhaps more reliable in good years, was less diverse, illnesses
due to inadequate food storage, increased transmission rates and endemic disease as a result of
increased population density, eventual development of global trade with a concomitant increase
in potential for disease spread over wide geographic regions, and increased mortality which, in
keeping with the epidemiologic transition model, would lead to increased birth rate.
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classic matrix of agent, host, and environment; socioeconomic, political, and cultural changes;
improved living conditions and standard of living, including the contributions of the sanitary
movement to water and sanitary services, improved nutrition, better personal hygiene, and less
overcrowding; medical and public health advances and interventions; better understanding of
infectious diseases with acceptance of the germ theory and adoption of antiseptics and
pasteurization; lower fertility and longer birth intervals with better infant and child survival; and
increasing lifespan resulting in an older population.
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other propositions in that, consistent with the third, it is characterized by lower fertility and
longer birth intervals, and in keeping with the second and fifth it is posited that improved
socioeconomic status leads to better nutrition and sanitation, which in turn improve health and
reduce morbidity and mortality.
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5. INFECTIVE AGENTS IN COMMUNICABLE DISEASES
Communicable disease (infectious disease) is an illness due to a specific infectious agent or its
toxic products that arises through transmission of that agent or its products from an infected
person, animal, or reservoir to a susceptible host, either directly or indirectly through an
intermediate plant or animal host, vector, or the inanimate environment.
5.1.2 Reservoirs
A reservoir is an organism or habitat, in which an infectious agent normally lives, transforms,
develops and/or multiplies. Reservoirs for infectious agents may be humans, animals, plants or
other inanimate objects. Some diseases with human reservoirs include HIV/AIDS/Sexually
Transmitted Infections (STIs), measles, typhoid, etc. All infected humans, whether showing
signs and symptoms of the disease or not, are potential sources of infection to others. A person
who does not have apparent clinical disease, but is a potential source of infection to other people
is called a Carrier. An example of carrier is a person infected with HIV. A person infected with
HIV might not have the signs and symptoms but he/she is capable of transmitting the infection to
others. Some diseases are transmitted to human beings from animals. These diseases are called
zoonoses. Examples of zoonoses include Rabies, anthrax, etc.
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5.1.3 Portal of Exit
Portal of exit is the way the infectious agent leaves the reservoir. Possible portals of exit include
all body secretions and discharges, for example, mucus, saliva, tears, breast milk, vaginal and
cervical discharges, excretions (feces and urine), blood and tissues. For example feces is the
portal of exit for the eggs of hook worm.
ii. Direct Projection: This refers to transmission by projection of saliva droplets during
coughing, sneezing, singing, spitting or talking. An example is common cold.
iii. Transplacental: This means transmission from mother to foetus through the placenta.
Examples include syphilis, HIV/AIDS.
ii. Vector-borne: The infectious agent is conveyed by an arthropod to a host. Vectors may
be biological or mechanical. A vector is called biological vector if the agent multiplies in
the vector before transmission. The anopheles mosquito is a biological vector for malaria.
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A vector is called mechanical vector if the agent is directly infective to other hosts,
without having to go through a period of multiplication or development in the vector. The
vector simply carries the agent by its body parts (leg, proboscis etc) to convey it to
susceptible hosts. Flies are mechanical vectors for the transmission of trachoma.
iii. Airborne: This transmission may occur by dust or droplet nuclei (dried residue of
aerosols). An example is Tuberculosis. When pulmonary tuberculosis patients cough,
they emit many aerosols which consist of the agents of tuberculosis. When these aerosols
dry, droplet nuclei are formed. These droplet nuclei will remain suspended in the air for
some time. When other healthy susceptible individual breaths, he/she inhale the droplet
nuclei and may become infected with tuberculosis.
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6. RISK FACTORS IN COMMUNICABLE DISEASES
The main risk factors that have been identified to likely cause communicable diseases are
highlighted below:
6.1 WASH
Water, sanitation and hygiene are central elements to limit the risk of communicable diseases.
WASH risk factors include issues such as lack of safe drinking water, lack of hygiene, hygiene
behaviour, lack of soap, and general water scarcity, as well as lack of adequate sanitation and
latrines. These factors considerably increase the risk for diarrhoeal diseases and compound risks
for other types of communicable diseases especially if they are coupled with other risk factor
categories such as overcrowding and mass population displacement.
6.2 Overcrowding
Overcrowding is usually a function of either mass population displacement or entrapment. While
overcrowding can also be an issue in ad hoc shelters after the widespread destruction of homes
and infrastructure, it is more prevalent if populations are forced to become refugees or internally
displaced persons and are forced into camps. Overcrowding affects both hygiene-related
diseases, such as diarrhoeal diseases, but also increases the transmission rate of diseases such as
measles and other infections that spread from person to person.
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6.4 Nutrition
While nutrition factors such as malnutrition, food shortages and exposure to contaminated food
are mainly risk factors at the individual level, they also pose increased risk to populations as a
whole if a sufficient percentage of the population is exposed. Nutrition factors are related to
increased susceptibility to communicable diseases with resulting greater shedding and
transmission to others. At the population level, nutritional factors can exacerbate other risk
factors and risk factor clusters, for example by increasing the risk of violence and social unrest.
Root causes for nutrition risk factors lie mainly in other risk factor clusters such as insecurity and
armed conflict or mass displacement and inadequate humanitarian response.
6.6 Insecurity
Insecurity is a multifaceted bundle of risk factors that is one of the main root causes for increased
mortality. Insecurity is composed of factors such as armed conflict, social disruption and
political instability. Insecurity triggers other factors such as a lack of an adequate humanitarian
response as it poses risks to aid workers and inhibits access to beneficiaries. Additionally, it also
inhibits access for the population to health services and has a high potential to disrupt all other
services.
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6.8 Environment
Environmental factors can increase the likelihood of communicable diseases outbreaks.
Environmental risk factors include weather and climate factors, such as cold and dust storms, but
also vector habitats, increased contact with animals and endemic diseases.
6.9 Economy
Economic factors such as poverty and lack of resource are also implicated as factors that can
increase the likelihood of communicable disease outbreaks.
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7. NON-COMMUNICABLE DISEASES
Non-communicable diseases (NCDs), also known as chronic diseases, are medical conditions
that are associated with long durations and slow progress. Most NCDs are non-infectious and are
the result of several factors, including genetic, physiological, behavioral, and environmental
factors. According to the World Health Organization (WHO), NCDs are the leading cause of
death worldwide, responsible for 71% of the total number of deaths each year. The top four
killers among NCDs with the highest number of deaths are cardiovascular diseases (17.9 million
deaths annually), cancers (9.0 million), respiratory diseases (3.9 million) and diabetes (1.6
million). A list of non-communicable diseases is shown in Figure 7.1.
Several factors can increase the amount of opportunities to develop NCDs and can be
classified in different ways. In one approach, risk factors are classified as modifiable or non-
modifiable factors. The modifiable risk factors involve high blood pressure, smoking, diabetes
mellitus, physical inactivity, obesity and high blood cholesterol; while the non-modifiable risk
factors involve age, gender, genetic factors, race, and ethnicity. The non-modifiable factors can
also be classified into three classes: (i) biological factors, such as being overweight,
dyslipidemia, hyper-insulinaemia and hypertension; (ii) behavioral factors, such as diet, lack
physical activity, tobacco smoking and alcohol consumption; and (iii) societal factors, which
involve complex combinations of interacting socioeconomic, cultural and environmental
parameters. A model to classify the risk factors of NCDs is presented in Figure 7.2.
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Figure 7.1: List of non-communicable diseases
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8. EPIDEMIOLOGICAL METHODS
Epidemiology is used to describe the distribution of diseases in a population and to analyze the
causes of these diseases. The three major types of epidemiologic study designs or techniques are
descriptive, analytic and experimental. Although all three can be used in investigating the
occurrence of disease, the method used most is descriptive epidemiology. Once the basic
epidemiology of a disease has been described, specific analytic methods can be used to study the
disease further, and a specific experimental approach can be developed to test a hypothesis.
8.1.2.1 Person
People can be categorized with respect to many variables. In epidemiologic study, it is common
to specify three characteristics of a person – age, sex and ethnic group or race. Age: Age is the
most important determinant among the personal variables. Example: Measles affects children.
Sex: There are some diseases which are common among females. For example, breast cancer is a
disease of females. Ethnic group and Race: Many diseases differ markedly in frequency,
severity, or both in different racial or ethnic groups.
Other personal variables that should be considered during epidemiologic studies include
social class, religion, occupation, marital status, environmental exposure, etc.
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8.1.2.2 Place
The frequency of disease is different in different places. These differences can occur because of
the natural boundaries (e.g., mountain range, rivers and deserts). An area defined by natural
boundaries may have a high or low frequency of certain diseases because it is characterized by
some particular environmental or climatic conditions, such as temperature, humidity, rainfall,
altitude, mineral content of soil, or water supply. For example, malaria is common in tropical
areas.
8.1.2.3 Time
Study of disease occurrence by time is a basic aspect of epidemiologic analysis. Occurrence is
usually expressed on a monthly or annual basis. Some diseases occur periodically or cycles.
Cycles may be annual or have some other periodicity. The most common types of periodicity are
in relation to seasonal changes, or in relation to changes in the number of susceptible persons in a
population. Malaria is one of the examples of diseases with seasonal periodicity, where high
peaks occur in relation to the rainy season. The malaria epidemic is common in October and
November when stagnant water bodies are convenient for the breeding of mosquitoes.
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iii. Identify rare manifestations of a disease
The disadvantages of case report are as follows:
i. Cases may not be generalized.
ii. Not based on systematic studies.
iii. Causes or associations may have other explanations.
8.1.3.3 Incidence
Incidence, in epidemiology, refers to the occurrence of new cases of disease, injury or other
medical conditions over a specified time period, typically calculated as a rate or proportion.
Examples of incident cases or events include a person developing diabetes, becoming infected
with HIV or starting to smoke. It is also important to no note that incidence contrasts with
prevalence, which includes both new and existing cases. For example, a person who is newly
diagnosed with diabetes is an incident case, whereas a person who has had diabetes for 10 years
is a prevalent case. For chronic diseases, such as diabetes, a person can have an incident case just
once in a lifetime. For diseases that can be resolved (e.g., the common cold, malaria, etc.), a
person can have multiple incidences over his or her lifetime.
The advantages of incidence case are as follows:
i. Provides information about the etiology (or cause) of a disease and its outcome.
ii. Allow researchers to determine the risk factors for a disease or other medical condition.
The disadvantage of prevalent cases is as follows:
i. Combines the study of new and surviving cases, making it unclear as to whether risk
factors are the causes of new cases or causes of survival.
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8.1.3.4 Cross-sectional study design (survey)
Cross-sectional study is a type of observational study design which is mainly concerned with the
distribution of diseases with respect to time, place and person. By conducting survey, the
magnitude of diseases or other health-related condition will be known. In cross sectional studies,
information about the status of an individual with respect to the presence or absence of exposure
and disease is assessed at a point in time. The point in time may be as short as few minutes or as
long as two or three months. The time frame of "point in time" is based on the speed of data
collection.
Cross-sectional studies are often carried using the following procedures:
1. Write the objectives of the survey.
2. Identify the methods of data collection. Data can be collected by using questionnaire,
interview, observation, applying laboratory tests, etc.
3. Recruit and train data collectors.
4. Calculate (determine) the number of people needed for the survey (sample size)
5. Collect the data.
6. Analyze the data.
7. Disseminate the findings.
The advantages of cross-sectional studies are stated below:
1. One-stop, one-time collection of data.
2. Less expensive and easier to conduct.
3. Provide much information useful for planning health services and medical programs.
4. Show relative distribution of conditions, disease, injury and disability in groups and
populations. For example by conducting survey in different towns, it is possible to know
which towns are highly affected by HIV/AIDS.
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The goal of ecological studies is the influence of the environment on the health of a group of
individuals, which is a very complex issue. When dealing with group level information, it is
important to be aware of what is called the ecologic fallacy. This fallacy results from concluding
that because an association exists between exposure and a health outcome at the group level, it
therefore exists at the individual level.
Female births
Proportion = ×100
Female + Male births
Rates: Rate is the most important epidemiological tool used for measuring diseases. Rate is a
special form of proportion that includes time. It is the measure that most clearly expresses
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probability or risk of disease in a defined population over a specified period of time. Hence, it is
considered to be a basic measure of disease occurrence. Accurate count of all events of interest
that occur in a defined population during a specified period is essential for the calculation of rate.
Incidence: The incidence of a disease is defined as the number of new cases of a disease that
occur during a specified period of time in a population at risk for developing the disease. New
cases refer to the number of persons in a defined population who develop a disease for the first
time during a defined period in time. Incidence can be categorized into risk and rate. It is
important to make a distinction between risk (cumulative incidence) and rate (incidence rate).
The cumulative incidence or risk is often interpreted as the number of individuals who develops
a specified disease in a population within a period in time. The incidence rate considers the time
period in which each individual was in fact at risk of developing the specified disease and could
be monitored. This period is designated as person-time (the time which a study participant
contributed to the study).
Calculation of person-time and incidence rate: Person-time is an estimate of the actual time-at-
risk in years, months or days that all participants contributed to a study. In certain studies people
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are followed for different lengths of time, as some will remain free of a health outcome or
disease longer than others. A subject is eligible to contribute person-time to the study only so
long as that person does not yet have the health outcome under study and, therefore, is still at risk
of developing the health outcome of interest. By knowing the number of new cases of the health
outcome and the person-time-at-risk contributed to the study, an investigator can calculate the
rate of the health outcome or disease, or how quickly people are acquiring the health outcome or
disease. The denominator for incidence rate (person-time) is a more exact expression of the
population at risk during the period of time when the change from non-disease to disease is being
measured. The denominator for the incidence rate changes as persons originally at risk develop
the health outcome during the observation period and are removed from the denominator.
As an example, suppose an investigator conducting a study of the rate of tuberculosis
followed 5 subjects from baseline (all subjects are at risk at the beginning of study) for up to 10
weeks and obtained results graphically displayed as follows:
The graph shows how many days each subject remained in the study as a non-case (no
tuberculosis disease in subjects) from baseline. From this graph the investigator can calculate
person-time. Person-time is the sum of total time contributed by all subjects. The unit for person-
time in this study is person-days (p-d). Time contributed by each subject is as follows:
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The total number of subjects becoming cases (subjects A, C, and E) is the numerator in the
incidence rate measure.
Therefore, the incidence rate of tuberculosis = 3 cases/(236 person-days) = 0.0127 cases per
person-days. By multiplying the numerator and denominator by K = 1000, the incidence rate =
13 cases per 1000 person-days.
In another example, suppose an investigator studied the rate of breast cancer in women
with a family history of breast cancer; and subjects were examined once a year for up to five
years. In order to calculate person-time when the investigator was only examining the patients at
specified intervals (once a year), the investigator must determine when a newly diagnosed case
acquired the disease within the last year. In order to adequately determine the amount of person-
time, the investigator may decide that the onset of breast cancer occurred at the midpoint of the
time interval between being disease-free and becoming a case. This is because the investigator
would not know precisely when the subjects developed breast cancer. Assuming the graph below
displayed the amount of time until onset of breast cancer for each subject.
Time contributed by each subject would be: Subject A = 2.5 years, Subject B = 5 years, Subject
C = 1.5 years, Subject D = 5 years, Subject E = 0.5 years
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14.5 person-years is the denominator in the rate of breast cancer. The incidence rate = 3
cases/(14.5 person-years) = 0.207 cases person-years. By multiplying both the numerator and
denominator by K = 1000, the incidence rate would become 207 cases per 1000 person-years.
Example of cumulative incidence: If in 2023, there were 50 new cases of malaria in Okada, Edo
State, Nigeria; with an average study population of 5000. Given that K is 1000, calculate the
cumulative incidence.
50
Cumulative incidence = ×1000 = 10 new cases per 1000 persons per year in Okada
5000
This result can be interpreted as follows: Out of every 1000 persons living in Okada, 10 of them
acquired malaria in Year 2023.
Attack rate: Another commonly used measure of morbidity is attack rate. Attack rate is a type of
incidence which is mainly used during epidemics.
As an example, if 100 persons visited a restaurant and they all eat jellof rice spiced with salad,
then by the next day 90 out the 100 people who ate that food developed diarrhea. Given that K =
100, calculate the attack rate of diarrhea.
90
Attack rate = ×100 = 90 cases of diarrhea per 100 persons
100
Prevalence rate:
Prevalence rate measures the number of people in a population who have a disease at a given
time. It includes both new and old cases. The major type of prevalence is point prevalence rate.
Point prevalence rate measures the proportion of a population with a certain condition at a given
point in time. Point prevalence rate can be determined by conducting cross-sectional study.
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All persons wit h a specific condition at one poin ∈time
Point prevalence rate = ×K
Total study population
K is a constant factor representing the defined population
Example: A researcher conducted a survey in one of the private-owned universities in Edo State,
Nigeria in 12th July 2023 to know the prevalence of asymptomatic bacteriuria in that school. The
total number of students selected for the study was 200, and they were all examined for
asymptomatic bacteriuria. After the bacteriological analysis, 100 students were found to be
positive for asymptomatic bacteriuria. Given that K = 100, calculate the point prevalence rate of
asymptomatic bacteriuria for that school.
100
Point prevalence rate = ×100 = 50
200
This result means that for every 100 students in the university, 50 students had asymptomatic
bacteriuria as at 12th July 2023.
Mid-interval population =
Population count at the start of the period of observation+ ¿ Population count at the end of the timeinterval conside
2
The formulae for the commonly used mortality rates and ratios are outlined below.
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Crude mortality rate: The crude mortality rate measures the proportion of the population dying
every year, or the number of deaths in the community per a population of 1000 persons. It
reflects the risk of death in that community or country. However, since population vary in
composition (e.g., age and sex), differences in crude rates may be difficult to interprete.
Age-specific mortality rate: This rate provides a broader view of mortality for sub-groups
stratified by age. The numerator and denominator are limited to a specific age group. The rate is
comparable across populations. Some examples of age-specific mortality rate are Infant
Mortality Rate and Neonatal Mortality Rate.
Infant mortality rate: Infant mortality rate reflects the health of the community in which the
child is being brought up. Thus, it is high among people who have little health care, chiefly
because infections, such as pneumonia, diarrhea and malaria, are common among their infants.
Malnutrition is also one of the killers of infants in developing countries.
Neonatal mortality rate: Death during the neonatal period is largely due to prematurity,
malformations, accidents or injuries at birth, and lack of cleanliness and sterility during or after
delivery. In addition, it reflects the inadequacy of antenatal care. Neonatal mortality rate is
calculated as follows:
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Neonatal mortality rate =
Number of deaths under 28 days of age reported during a given time
×1000
Number of live births reported during the same time
Example: Assuming in 2023 there were a total of 5000 live births at the Igbinedion University
Teaching Hospital, Okada, Edo State, Nigeria. Two hundred (200) of them died before 28 days
after birth. Calculate the neonatal mortality rate.
200
Neonatal mortality rate = ×1000 = 40 per 1000 live births
5000
The result showed that out of 1000 live births in 2023, 40 of them died before 28 days after birth.
Case fatality rate: Case fatality rate represents the probability of death among diagnosed cases.
Example: In 2023 there were 1000 HIV/AIDS patients in Benin City, Edo State, Nigeria. Out of
the 1000 patients, 100 died in the same year. Calculate the case fatality rate of HIV/AIDS.
100
Case fatality rate = ×100 = 10%
1000
This result indicates that 10% of HIV/AIDS patients will die once they develop the disease.
Maternal mortality rate: Maternal Mortality Rate reflects the standards of all aspects of maternal
care (antenatal, delivery and postnatal).
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Proportionate mortality ratio: The proportionate mortality ratio proffers answers to the
proportion of deaths that are due to a certain cause. For example, if the proportionate mortality
ratio breast cancer is 30 %, it means that out of a total of 100 deaths from all causes of death, 30
persons died due to breast cancer ailment.
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of the lungs, the studied group consists of smokers (exposed group), control non-smokers
(unexposed group). So, data is primarily selected from the exposed and non-exposed population.
The advantages of cohort studies are stated as follows:
i. They are accurate
ii. They are reliable.
iii. They are objective.
iv. They assess the multiple consequences of a single exposure.
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i. They rely on human memory
ii. They have high risk of selection bias.
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2 Y N
3 Y Y
4 Y Y
5 N N
6 N Y
7 N N
8 N N
9 N Y
10 N N
From the table, the participants consisted of 4 smokers and 6 nonsmokers. 5 participants had
lung cancer and 5 participants were without lung cancer. In this example, smoking is the
exposure and lung cancer is the health outcome, implying that the 4 smokers are “exposed” (E+)
and the 6 nonsmokers are “unexposed” (E−); while the 5 participants with lung cancer are
“diseased” (D+) and the 5 participants without lung cancer are “non-diseased” (D−). This
information can be organized into a 2 × 2 table as follows:
D+ D- Total
E+ 3 1 4
E- 2 4 6
Total 5 5 10
The 2 × 2 table summarizes the information from the longer table above so that the 3 participants
that were both exposed and diseased (persons 1, 3, and 4) can be quickly seen; one participant
was exposed but not diseased (person 2); two participants were unexposed but diseased (persons
6 and 9); and the remaining 4 participants were neither exposed nor diseased (persons 5, 7, 8, and
10). Though, it does not really matter whether exposure or disease is placed on the left or across
the top of a 2 × 2 table, the convention in epidemiology is to have exposure on the left and
disease across the top.
When discussing 2 x 2 tables, epidemiologists use the following shorthand to refer to
specific cells, as shown below:
D+ D- Total
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E+ A B A+B
E- C D C+D
Total A+C B+D A+B+C+D
feasible to study everyone in the population. Therefore, a sample is drawn and the individuals in
the sample are used to perform the study. For a cohort study, since incidence will be calculated,
the study starts with individuals who are at risk of the outcome. Therefore, non-diseased sample
are drawn from the target population, as shown in Figure 8.2.
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Figure 8.2: Non-diseased sample (D- sample) drawn from the target population
The next step in a cohort study is to assess the exposure status of the individuals in the sample
and determine whether they are exposed or not. By definition, at the beginning of a cohort
study, everyone is still at risk of developing the disease. However, as the study progresses some
individuals in the study may no longer be at risk upon development of the disease, and are thus
regarded as cases. It is important to note that in an attempt to determine the number of cases in a
cohort study, the participants in the study are followed for some length of time to detect incident
cases as they arise. Figure 8.3 shows a generalized approach used in cohort study.
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However, the length of follow-up varies depending on the disease process in question. For a
research question regarding childhood exposure and late-onset cancer, the length of follow-up
would be decades. For an infectious disease outbreak, the length of follow-up might be a matter
of days or even hours, depending on the incubation period of the particular disease.
Recall that the original goal of the cohort study is to see whether exposure is associated
with disease. The most common way of doing this is to calculate the combined ratio, consisting
of the risk ratio and rate ratio.
following data on the effects of tobacco smoke exposure on respiratory illness among tobacco
smokers, and obtained the data as presented in the Table below.
In this study, the risk in the exposed group is 60/200, or 0.30 cases per person (30 cases per 100
people), and the risk in the unexposed group is 25/200, or 0.125 cases per person (13 cases per
100 people). Therefore, the risk ratio is 0.30/0.125, or 2.4. A risk ratio of 2.4 implies that the
exposed group has 2.4 times the risk of developing respiratory illness as the unexposed group.
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General interpretation of risk ratio (RR): If the RR is greater than 1, it means that more disease
is observed in the exposed group than in the unexposed group. Likewise, if the RR is less than 1,
it means that less disease is observed in the exposed group than in the unexposed group. If
causality is assumed, an exposure with an RR < 1 is preventing disease, and an exposure with an
RR > 1 is causing disease. The null value for a risk ratio is 1.0, which would mean that there was
no observed association between exposure and disease. Because the null value is 1.0, one must
be careful if using the words higher or lower when interpreting RRs. For instance, an RR of 2.0
means that the disease is twice as common, or twice as high, in the exposed compared to the
unexposed—not that it is 2 times more common, or 2 times higher, which would be an RR of 3.0
(since the null value is 1, not 0). The correct interpretation of an RR is:
“The risk of [disease] was [RR] times as high in [exposed] compared to [unexposed]
over [x] days/months/years.”
In this study, the rate in the exposed cohort is 60/175 person-years, or 0.34 cases/person-year.
The rate in the unexposed cohort is 25/188 person-years, or 0.13 cases/person-year. The rate
ratio in this study is 0.34/0.13, or 2.6, which is higher than the rate ratio calculated above. This
rate ratio reveals that respiratory illness among smokers exposed to tobacco fumes is developing
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at 2.6 times the rate that respiratory illness is developing among non-smokers not exposed to
tobacco fumes.
An exposure may be preventive (e.g., vitamin intake) or harmful (e.g., toxic chemical
exposure). Confounding is one type of systematic error that can occur in epidemiologic studies.
Confounding can cause an over- or under-estimate of the observed association between exposure
and a health outcome. Assuming there are no other factors that may confound the association, a
risk ratio less than 1 indicates that the risk in the smoker (index) group is less than the risk in the
unexposed or less-exposed (reference) group, and therefore, the exposure is preventive. A risk
ratio or rate ratio that equals 1 (the null value) indicates that there is no difference in risk or rates
between exposed and unexposed groups. A rate or risk ratio greater than one indicates that the
risk in the exposed is greater than the risk in the unexposed. Therefore, the exposure is harmful.
The following table may be applied to both risk and rate ratios:
The farther away the risk ratio or rate ratio is from the null value of one, the greater the effect of
exposure is on the study group. This is shown in the following diagram.
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attributed to the exposure?” Risk difference is defined as the risk in the exposed minus the risk in
the unexposed (Equation 1). The risk difference is the excess risk of disease among the exposed
population. Rate difference uses a similar equation (Equation 2.) In the past, risk difference was
called “attributable risk”; sometimes attributable risk is still used. “Attributable fraction among
the exposed” is the risk difference reported as a percent of the exposed population (Equation 3).
“Attributable proportion” or “attributable risk percent” are alternative terms for Equation 3.
Lastly, the attributable fraction among the total population (Equation 4) answers the question
“what proportion of disease in the total population is associated with the exposure?” See Figure
4.9, terms, and equations defined below.
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8.2.4.3 Case control study
This is a retrospective study that uses prevalence data. Following participants while waiting for
incident cases of disease is expensive and time-consuming. Often, epidemiologists need a faster
(and cheaper) answer to their question about a particular exposure/disease combination. One
might instead take advantage of prevalent cases of disease, which by definition have already
occurred and therefore require no wait. In this study since incident cases are not used, risk and
rate ratios cannot be calculated. Instead, case control study is analyzed using odds ratio.
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An example of a case-control study using a 2×2 table to summarize the data from a lead
poisoning study can be analyzed using the exposure odd ratio as follows:
17 13 17 ×87
Odds ratio = ÷ = =1.37
83 87 13 ×83
The interpretation of an OR is the same as that of an RR, with the word odds substituted for risk:
The odds of lead poisoning were 1.37 times as high in persons that work in mine compared to
persons that do not work in mines.
Note that time is no longer mentioned, as these data came from a cross-sectional study, which
does not involve time. As with interpretation of RRs, ORs greater than 1 mean that exposure is
associated with higher odds of outcome, and ORs less than 1 means that exposure is associated
with lower odds of outcome. OR = 1 (Null value) means that exposure does not affect odds of
outcome.
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as a reminder that cross-sectional studies are conducted on prevalent cases. The calculation of
such a measure is exactly the same as the OR as presented above.
PR = [ ]
a
a+b
÷[
c
c+ d
]
a ×d
Prevalence odds ratio (POR) =
c ×b
The following 2 × 2 table of a breast cyst study is used as an example to calculate PR and POR:
Prevalence of breast cyst among ever user of oral contraceptives = 124/3247 = 0.038
Prevalence of breast cyst among never user of oral contraceptives = 77/2644 = 0.029
124 ×2557
Prevalence odds ratio = =1.3
3123 ×77
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hypothesis. An example is the evaluation of the effect of a new drug on a disease. A group of
people with the disease is identified, and some members are randomly selected to receive the
drug. If the only difference between the two is use of the drug, the clinical differences between
the groups should reflect the effectiveness of the drug. Measurements in experimental
epidemiology mainly use the randomized control trials (RCT) technique.
The procedure for a randomized controlled trial (RCT) is exactly the same as the
procedure for a prospective cohort, with one exception: instead of allowing participants to self-
select into “exposed” and “unexposed” groups, the investigator in an RCT randomly assigns
some participants (usually half) to “exposed” and the other half to “unexposed.” In other words,
exposure status is determined entirely by chance. This is the type of study required by the Food
and Drug Administration for approval of new drugs in which half of the participants in the study
will be randomly assigned to the new drug and half to the old drug (or to a placebo, if the drug is
intended to treat something previously untreatable). RCT still involves generating incidence data
that will be epidemiologically analyzed by calculating either the risk ratio or the rate ratio.
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9. EPIDEMIC INVESTIGATION AND MANAGEMENT
9.1 Levels of Disease Occurrence
Diseases occur in a community at different levels at a particular point in time. Some diseases are
usually present at a predictable level. This is called the expected level. But sometimes they occur
in excess of what is expected. The examples of expected level are endemic and hyper-endemic.
When the disease occur as epidemic, outbreak or pandemic it is considered as excess of what is
expected.
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The definition of epidemic indicates that the term can have a broad meaning. It may include any
kind of disease or injury including non–infectious diseases. There is no general rule about the
number of cases that must exist for a disease to be considered an epidemic. If the number of
cases exceeds the expected level on the basis of the past experience of the particular population,
then it is an epidemic. It is important to note that this level varies for different diseases and
different circumstances. An epidemic may cover a small area within a city, or an entire nation or
may have a worldwide distribution. It may encompass any time period ranging from few hours
(chemical intoxication, bacterial food poisoning), a few weeks (influenza, hepatitis) to several
years (AIDS). A disease that remains epidemic over many years eventually may be considered
endemic.
2. Propagated/ Progressive Epidemics: The infectious agent is transferred from one host to
another. It can occur through direct person to person transmission or it can involve more
complex cycles in which the agent must pass through a vector as in malaria. Propagated
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spread usually results in an epidemic curve with a relatively gentle upslope and
somewhat steeper tail. An outbreak of malaria is a good example of propagated epidemic.
3. Mixed Epidemics: The epidemic begins with a single, common source of an infectious
agent with subsequent propagated spread. Many foodborne pathogens result in mixed
epidemics.
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Collect sample questionnaire.
Arrange transportation and organize personnel matters.
Clarify the team role in the field. Arrange where and when to meet.
2. Verify (confirm) the existence of an epidemic: This initial determination is often made on
the basis of available data. Compare the number of cases with the past levels to identify
whether the present occurrence is in excess of its usual frequency. Instead of comparing
absolute numbers it is advisable to compare rates like incidence rate
3. Verify (confirm the diagnosis): Always consider whether initial reports are correct. Carry
out clinical and laboratory investigations on the reported cases. For example the already
collected blood film slides can be seen by laboratory experts to check whether the initial
report was correct. It is important to investigate the index case (the first case that comes
to the attention of health authorities) and other early cases. The importance of the index
case and other early cases for diseases that are known to occur in epidemic form, such as
relapsing fever, is as an indication to health authorities of the possible start of an
outbreak. The sooner the index case and other early cases are investigated, the greater the
opportunity to arrest the outbreak at earliest stage possible
4. Identify and count case: Prepare “case definition” before starting identification of cases.
Case definition is defined as a standard set of criteria to differentiate between cases and
non cases. Cases can be one of the following: Confirmed/definite: A case with laboratory
verification. Probable: A case with typical clinical features but without laboratory
confirmation. Possible: A case with fewer of typical clinical features. Cases can better be
identified by active case detection using all available means including house to house
visits. They can also be identified by stimulated passive case detection, for example by
alerting the public about the epidemic and requesting them to report to the nearest health
institution when they have signs and symptoms of that disease. The health extension
worker can identify and count cases based on the sign and symptoms of the disease. If
there is effective drug for the treatment of that disease, cases can be treated while
identifying them. Additionally other control measures can be taken side by side to arrest
the epidemic before many people are affected.
5. Describe the epidemic with respect to person, place and time: Each case must be defined
according to standard epidemiologic parameters: the date of onset of the illness, the place
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where the person lives or became ill, and the sociodemographic characteristics (age, sex,
education level, occupation). The tools to be used when characterizing the epidemic are
epidemic curve, spot map and attack rates. Epidemic curve is an important tool for the
investigation of disease outbreaks. In epidemic curve the distribution of cases is plotted
over time, usually in the form of histogram, with the date of onset of cases on the
horizontal axis, and the number of cases corresponding to each date of onset on the
vertical axis. Spot map is a map of locality where the outbreak has occurred, on which
the location of cases is plotted. The spot map is often helpful in detecting the source of an
outbreak. One limitation of spot map is that it does not take into account underlying
geographic differences in population density. Thus the spot map needs to be
supplemented by calculation of place specific attack rates. Person specific attack rates:
The tool that is important for the analysis of disease outbreaks by personal characteristics
is person specific attack rates like attack rates by age, sex, occupation, income, religion
etc.
6. Identify the causes of the epidemic: All factors that can contribute to the occurrence of
the epidemic should be assessed. The epidemic investigating team should try to answer
questions like: Why did this epidemic occur?; Are there many susceptible individuals? Is
the temperature favorable for the transmission of the diseases?; Are there breeding sites
for the breeding of vectors? Etc. Confirmation of the diagnosis can be done by using
additional tests which are more accurate. In addition to knowing the etiologic agent, more
emphasis should be given to identify the risk factors. Investigate the environmental
conditions such as food sanitation, suspected breeding sites, animal reservoirs, according
to the type of disease outbreak being investigated.
7. Management of epidemic and follow up: Although it is discussed late, intervention must
start as soon as possible depending on the specific circumstances. One might aim control
measures at the specific agent, source, or reservoir. For example, an outbreak might be
controlled by destroying contaminated foods, disinfecting contaminated water, or
destroying mosquito breeding sites or an infectious food handler could be suspended
from the job. Management of epidemics requires an urgent and intelligent use of
appropriate measures against the spread of the disease. Action to be taken is dependent
on the type of the disease as well as the source of the outbreak. However, the actions can
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be generally categorized as presented below to facilitate easy understanding of the
strategies.
I. Measures Directed Against the Reservoir.
2. Understanding the nature of the reservoir is necessary in the selection of an
appropriate control methods and their likelihood of success. The following are examples of
control measures against diseases with various reservoirs:
Domestic animals as reservoir:
Immunization. Example – giving anti-rabies vaccine for dogs
Destruction of infected animals e.g anthrax. Wild animals as reservoir: post-exposure
prophylaxis for human beings- Example: rabies
Humans as reservoir:
a. Isolation of infected persons. This is separation of infected persons from non-infected for the
period of communicability. This is not suitable in the control of diseases in which a large
proportion are inapparent infection (without signs and symptoms) or in which maximal
infectivity precedes overt illness.
b. Treatment to make them noninfectious- e.g., tuberculosis.
c. Quarantine- is the limitation of freedom of movement of apparently healthy persons or animals
who have been exposed to a case of infectious disease. Usually imposed
for the duration of the usual maximal incubation period of the disease. Cholera, Plague, and
yellow fever are the three internationally quarantinable diseases by international
agreement. Now quarantine is replaced in some countries by active surveillance of the
individuals; maintaining close supervision over possible contacts of ill persons to detect infection
or illness promptly; their freedom of movement is not restricted.
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Actions to reduce transmission of respiratory infections include ventilation of rooms.
In the case of diseases that involve an intermediate host for transmission, for example
schistosomiasis, clearing irrigation farms from snails is an appropriate measure.
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