Chapter 4 - Extention To Mendelian Genetics
Chapter 4 - Extention To Mendelian Genetics
EXTENSIONS OF MENDELIAN
GENETICS
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Loss-of-function mutations
New phenotype results from change in activity
Mutation causes loss of wild-type function
Gain-of-function mutations
Mutation enhances function of wild type
Quantity of gene product increases
Neutral mutations
No change to the phenotype
No change to the evolutionary fitness of the organism
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Dominant alleles indicated by either an italic uppercase letter (D) or letters (Wr)
Recessive alleles indicated by either an italic lowercase letter (d) or an italic letter or
group of letters (wr)
Mutant alleles indicated by italic letter (e)
Wild type alleles indicated by italic letter plus superscript + (e+)
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e+/e+: gray homozygote (wild type) OR +/+: gray homozygote (wild type)
e+/e: gray heterozygote (wild type) +/e: gray heterozygote (wild type)
e/e: ebony homozygote (mutant) e/e: ebony homozygote (mutant)
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Wr+/Wr+: normal homozygote (wild type) OR +/+: normal homozygote (wild type)
Wr+/Wr: Wrinkled heterozygote (mutant) +/Wr: Wrinkled heterozygote (mutant)
Wr/Wr: Wrinkled homozygote (mutant) Wr/Wr: Wrinkled homozygote (mutant)
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If no dominance exists: italic uppercase letters and superscripts for alternative alleles
(R1/R2, CW/CR)
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Intermediate phenotype
Neither allele is dominant
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Threshold effect
Normal phenotypic expression results
Certain level (usually 50% or less) of gene product is attained
In Tay-Sachs disease, < 50% threshold
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Codominance
No dominance or recessiveness
No incomplete or blending
Examples:
Black cat x white cat → striped cat
Blood groups A and B in humans (+ multiple alleles with blood type O)
Blood groups M and N
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Gene on chromosome 9
Example of multiple alleles
A and B antigens present on surface of red blood cells
Three alleles of a single gene responsible for A B O phenotypes
Gene I (=isoagglutinogen) : alleles IA, IB, i
IA and IB allele: Produce their respective antigens
i allele: Does not produce antigen
IA and IB are dominant to i
IA and IB are codominant to each other
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Purpose?
Compatibility tests for blood transfusions
Used to disprove (but not prove) paternity
A and B antigens
Carbohydrate groups bound to lipid groups on red blood cells
H substance
One or two terminal sugars are added
O blood types (ii) only have the H substance protruding from red blood cells
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In Drosophila: Curly wing (Cy), Plum eye (Pm), Dichaete wing (Dw), Stubble bristle (Sb), Lyra
wing (Ly)
Tailless Manx cats
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VIII.1- Epistasis
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Bombay phenotype
Homozygous recessive condition
First locus masks expression of second locus
Mutant FUT1 gene masks expression of IA and IB alleles
A or B antigen forms only when individual has one wild-type allele
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Bombay phenotype
1952 : Type O female, yet…
One parent has type A B blood and
Female is IB allele donor to two children
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Relationships between alleles and genes can vary greatly and affect the phenotypes
in many ways.
Genotypic ratios will be identical to Mendel’s predictions, but phenotypic ratios vary.
Epistasis is not necessarily due to a direct interaction between gene products.
Eg. Hereditary deafness
Ear forms as result of many genes
Genes interact to produce common phenotype
Mutations interrupt development hereditary deafness
Mutant phenotype
heterogeneous trait where many genes are involved
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WG Wg wG wg
WG WWGG WWGg WwGG WWgg
Wg WWGg WWgg WwGg Wwgg
wG WwGG WwGg wwGG wwGg
wg WwGg Wwgg wwGg wwgg 47
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First discovered by William Bateson and Reginald Punnett (of Punnett square fame), in
a cross between two true-breeding strains of white-flowered sweet peas
Typical ratios (in case of complete dominance at each locus):
9:7
Cross between two true-breeding strains of white-flowered sweet peas
All purple F1 plants
F2 plants in a ratio of 9/16 purple to 7/16 white
PC Pc pC pc
Precursor Intermediate Anthocyanin PC PPCC PPCc PpCC PpCc
product
Pc PPCc PPcc PcCc Ppcc
C P pC PpCC PPCc ppCC ppCc
pc PpCp Ppcc ppCc ppcc
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Complete dominance for each locus. A dominant allele at any locus masks the
phenotype of the other.
Typical ratios (in case of complete dominance at each locus):
15:1
Wheat color: 2 enzymes encoded by different genes able to convert the same
precursos into colored pigment.
Only recessive homozygote is white
Can be due to gene duplication
AB Ab aB ab
A AB AABB AABb AaBB AaBb
Precursor Pigment Ab AABb Aabb AaBa Aabb
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Complete dominance for each locus. A dominant allele at any locus masks the
phenotype of the other.
Typical ratios (in case of complete dominance at each locus):
13:3
Primula flower color.
Enzyme K produces malvidin (blue pigment)
Allele D encodes an inhibitor of K
Blue requires K- and dd
KD Kd kD kd
RP Rp rP rp
RP RRPP RRPp RrPP RrPp
Rp RRPp RRpp RrPp Rrpp
rP RrPP RrPp rrPP rrPp
rp RrPp Rrpp rrPp rrpp
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Complementation analysis
Screens number of individual mutations resulting in same phenotype
Can predict total number of genes determining a trait
Complementation group
All mutations present in any single gene
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X- Pleiotropy
Expression of a Single Gene May Have Multiple Effects
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Marfan syndrome
Single autosomal dominant mutation in gene that encodes protein fibrillin
widespread in many tissues in the body
important to the structural integrity of the lens of the eye, to the lining of vessels such as the aorta, and
to bones
Symptoms include lens dislocation, increased risk of aortic aneurysm, and lengthened long
bones in limbs
Porphyria variegate
Autosomal disorder
Toxic buildup of porphyrins (component of hemoglobin) in body, esp. brain
Numerous phenotypic effects
Abdominal pain, muscular weakness, fever, racing pulse, insomnia, vision issues, delirium, convulsions…
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Phenylketonuria
Deficiency in Phenylalanine hydroxylase (PAH) which converts Phe into Tyr
Phe accumulates
Brain toxicity = mental retardation
Converted into phenylketones, excreted in urine
Low levels of Tyr
Halts melanin production = pigmentation defects
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Sickle-cell anemia
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Y Chromosome
Relatively inert genetically
Male-specific genes on human Y chromosome
Lacks copies of genes found on X chromosome
X-linkage
Genes present on X chromosome exhibit specific patterns of inheritance
Different from autosomal genes
crisscross pattern of inheritance: in which phenotypic traits controlled by recessive X-
linked genes are passed from homozygous mothers to all sons
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Many genes and the respective traits controlled by them are recognized as being linked
to the X chromosome
Color blindness: X chromosome-linked
Red/green color blindness
Mother passes to all sons
Mother passes to no daughters
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Sex-limited inheritance
Expression of specific phenotype is absolutely limited to one sex
Sex-influenced inheritance
Sex of individual influences expression of phenotype
Not limited to one sex or the other
In both cases, autosomal genes but their phenotypic expression is dependent on the
gender.
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Penetrance
Percentage of expression of the mutant genotype in a population
“All-or-nothing”
Can depend on numerous factors (environment, age, other genes, etc.
E.g. penetrance for Huntington’s is 60% at 50, 100% at 70
Expressivity
Range of expression of mutant phenotype
Severity of symptoms for same disease
Result of genetic background differences and/or environmental effects
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a) (a) Female heterozygote for white eye genotype showing normal dominant phenotype
b) (b) Chromosomal rearrangement leads to variegated effect (also female heterozygote for white eye)
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Genetic suppression
Effect of one mutant gene countered by effect of a second mutant gene
E.g. in Drosophila: suppressor of sable (su-s), suppressor of forked (su-f), and suppressor of Hairy-
wing (su-Hw)
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Nutritional mutations
Prevent synthesis of nutrient molecules in microbes
Auxotrophs (microbe)
Phenotype expressed or not depending upon diet
Phenylketonuria
Loss of enzyme to metabolize amino acid phenylalanine
Severe problems unless low-Phe diet
Galactosemia
Cannot metabolize galactose
Lactose intolerance
Cannot metabolize lactose
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Genetic disease has earlier onset and increased severity with each succeeding
generation
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Genetic disease has earlier onset and increased severity with each succeeding
generation
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In humans:
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