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Sig-Scan Chapter1

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Chapter 1 - Introduction

What is SigmaScan Pro?


SigmaScan Pro5.0 User's Guide is a sophisticated image analysis
application that allows you to capture, modify, enhance, and measure
digital images. With its customizable interface and versatile macro
facility, you'll find it can help you solve a wide variety of image analysis
problems.
Here are a few examples of tasks that you might accomplish with
SigmaScan Pro:
Apply pseudocoloring to a satellite image to enhance the
visibility of particular features
Automatically count the number of blood cells in a microscopic
field after digitally compensating for overlapping cells
Find out how the shape factor or roundness of objects is affected
by a chemical treatment
Automatically compare images of circuit boards with a standard,
providing an alert when significant differences are detected
Quickly compare root growth distances and angles for
experimental and control plants
Conduct unattended, standardized measurements automatically
for each of 1,000 images
Clearly annotate images for publication
SigmaScan Pro's features may be broken down into four components:
1.

Image Acquisition

2.

Image Processing

3.

Measurement

4.

Automation

Image Acquisition: You may load image files with a wide variety of
image formats or capture the images directly through a TWAINcompliant device.

Chapter 1 - Introduction

Image Processing: SigmaScan Pro lets you enhance images in many


ways through filters, lookup tables, and other techniques.
Measurement: SigmaScan Pro provides over 50 measurements that may
be made manually or automatically.
Automation: The powerful VBA macro language allows you to perform
any of SigmaScan Pro's analysis functions automatically, as well as
control other applications. You may even use this feature to design your
own interface, with SigmaScan Pro as the image analysis engine that runs
in the background!
Please take the time to read through this manual so that you can take full
advantage of SigmaScan Pro's many features.

SigmaScan Pros Layout


The first thing you'll see when you run SigmaScan Pro is the
application's main window. Initially, this window is relatively empty,
but once you start working, it will contain one or more "child" windows
windows displaying images, worksheets, graphs, or macros.
Here's an example of how the main window may appear after opening
several child windows:

Chapter 1 - Introduction

In this example, several different types of child window have been


opened. There's an image window, in this case PlantGrowth.bmp, a
worksheet window (GrowthData.xls) and a graph window (Graph
Growth vs. Time).
Image windows hold the images you wish to analyze. You can have
many image windows open at once, and they may be displayed at
different levels of magnification (zoom). As you move the mouse cursor
over an image, SigmaScan Pro displays pixel intensity and other
information on the status bar.
The worksheet window holds the results of your measurements. For
example, image pixel intensities might be stored in column 1 of the
worksheet as you click on different locations in the image.
The graph window allows you to view worksheet data in graphical form.
You may click on the graph at any time to change the format of the graph
or select data columns.
Another type of child window, not shown in this illustration, is the macro
window. Macros, which may be edited in this type of window, allow you
to automate tasks in SigmaScan Pro and in other applications.
One final thing to notice in this screen shot is the toolbars. Once you
become familiar with SigmaScan Pro you'll want to customize the
toolbars so that the features you use most are only a click away.
Probably the first thing you'll want to do while learning to use
SigmaScan Pro is to open a sample image. To do this, open the File
menu, choose Open/Image, and then select an image file from the list of
files displayed in the dialog.

Main Title Bar


The Main Title Bar is found at the top of the applications window. At
the top left is SigmaScan Pros icon click here to display the system
menu. The title bar displays the application's name, as well as the name
of the active child window. The top right corner of the title bar displays
the minimize, maximize and close buttons.

Menu Bar
Beneath the Main Title Bar is the Menu Bar. Click on any one of these
menus to access SigmaScan Pro's commands. For example if you click
on Edit, eight commands will appear below it (Undo, Cut, Copy, Paste,
Clear, Find, Replace and Again). Complete descriptions of each menu
and its commands are given in the Reference chapter.

Standard Toolbar
The Standard Toolbar is one of SigmaScan Pros seven toolbars. (These
include the Annotation, Image Processing, Macro, Measurement,
Recording, Standard and User Toolbars) You may customize all of the

Chapter 1 - Introduction

toolbars to include any or all of the tools associated with that particular
bar. The User Toolbar can display any or all of SigmaScan Pros tools.
Once visible a toolbar may be dragged anywhere on the screen. When a
toolbar is dragged to the edge of the main window then the toolbar will
attach to that edge. When the toolbar is floating its shape may be
changed.

Image Window
Image windows contain images. Remember that the only restriction on
the number of loaded images is the systems memory. A loaded image
takes up workspace memory amounting to about three times the original
images size. Thus, a one-megabyte image will require about three
megabytes to load. More memory will be required to create image
overlays.

Data Worksheet Window


The data worksheet holds all the measurements you've made. Once
placed in the worksheet the data may be manipulated either manually,
with cell formulas like those used in Microsoft Excel, or through
SigmaScan Pros Visual Basic based macro language.

Graph Window
The graph window gives you a graphical view of the data in your
worksheet. You can plot up to three sets of data on a single graph. Click
on the graph to specify options such as regression lines and grids or to
select the data columns that will be plotted.

Status Bar
The Status Bar, located at the bottom of the main window, displays
calibrated image coordinates and gray scale or RGB intensity when the
pointer is over an image. It also displays menu command summaries
when the menu is active and the pointer is over a command. Choose
View/Status Bar to display or hide this portion of the main window.

Chapter 1 - Introduction

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