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Series GSE214140 Query DataSets for GSE214140
Status Public on Sep 29, 2023
Title The Second Generation of CAR-iMACs with Enhanced Polarization, CAR-mediated Efferocytosis and Superior Potency against Solid Tumors
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary Chimeric antigen receptor (CAR)-T cell therapies have shown great success in treating hematologic malignancies. Nonetheless, their therapeutic effect on solid tumors remains to be improved. Recently, macrophages have attracted great attention, given their ability to infiltrate solid tumors, phagocytize tumor cells as well as their immunomodulatory capacities. The first generation of CD3ζ-based CAR-macrophages demonstrated that the CAR could stimulate macrophage phagocytosis in a tumor antigen-dependent way. Here, we genetically engineered induced pluripotent stem cell (iPSC)-derived macrophages (iMACs) with TLR4 intracellular TIR domain-containing CARs against EGFRvIII and GPC3, which yielded markedly enhanced antitumor effect in two different solid tumor models including glioblastoma, and hepatocellular carcinoma in which complete remission was achieved with CAR-iMACs alone or in combination with CD47 antibody. Moreover, the tandem CD3ζ-TIR-CAR, or the “second-generation” design of TIR-based dual signaling CAR, endowed iMACs with both target engulfment/efferocytosis capacity against antigen-expressing solid tumor cells, and potency of antigen-dependent M1 state polarization and M2 state resistance in an NF-κB dependent manner. We also illustrated a surprising mechanism of tumor cell elimination by CAR-induced efferocytosis against tumor cell apoptotic bodies. Taken together, we established the next generation CAR-iMACs equipped with orthogonal phagocytosis and polarization capacity for better antitumor functions in treating solid tumors.
 
Overall design We pretreated EGFRvIII-targeting CAR-iMACs were incubated with U87MGEGFRvIII cells with IFN-γ/LPS for 24 hours. Subsequently, we performed 10×genomics single-cell RNA-sequencing and found that TIR-based CARs contributed to the proinflammatory state of CAR-iMACs in a CAR- and antigen-dependent manner when encountering tumor cells and improved immune activity against target tumor cells.
 
Contributor(s) Lei A, Yu H, Zhu Y
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Submission date Sep 25, 2022
Last update date Sep 30, 2023
Contact name Hua Yu
E-mail(s) yuhua@westlake.edu.cn
Phone 18758008246
Organization name Westlake University
Street address No.18 Shilongshan Road
City Hangzhou
ZIP/Postal code 310024
Country China
 
Platforms (1)
GPL18573 Illumina NextSeq 500 (Homo sapiens)
Samples (3)
GSM6600068 Truncated CAR-iMAC, scRNAseq
GSM6600069 TIR-CAR-iMAC, scRNAseq
GSM6600070 CD3ζ-TIR-CAR-iMAC, scRNAseq
Relations
BioProject PRJNA884115

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE214140_RAW.tar 259.2 Mb (http)(custom) TAR (of TAR)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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