<p>Phenotypic changes in liver and body weight after high-intake feeding in lion-head geese. (<b>A</b>) Goose liver in the groups of high-intake feeding and normal feeding. (<b>B</b>) The weight of liver. (<b>C</b>) The size of the goose liver. (<b>D</b>) The weight of goose (** <span class="html-italic">p</span> < 0.01; * <span class="html-italic">p</span> < 0.05).</p> Full article ">Figure 2
<p>Overview of whole-transcriptome sequencing. (<b>A</b>) The density distribution of transcriptome was according to log10 (FPKM), original gene read counts were normalized using the FPKM method. (<b>B</b>) The 6−sample expression violin plot. (<b>C</b>) The principal component analysis (PCA) is useful for exploring the distance relationship between the 6 samples. (<b>D</b>) Pearson’s correlation matrix for mRNA, lncRNA, and circRNA profiles.</p> Full article ">Figure 3
<p>Identification and analysis of mRNA, lncRNA, and circRNA associated with fatty liver. (<b>A</b>) Volcano plots of DEGs in mRNA. (<b>B</b>) Volcano plots of DEGs in lncRNA. (<b>C</b>) Volcano plots of DEGs in circRNA. Each dot in the plot represents a gene with its corresponding log2 fold change (FC) on the x-axis and <span class="html-italic">p</span>-value (log10) on the y-axis. The horizontal line indicates the significance threshold (false discovery rate <5%), whereas the vertical line segregates genes with logFC >1.5. Gray represents no significant difference between the two groups, red indicates the upregulated genes, and blue indicates the downregulated genes.</p> Full article ">Figure 4
<p>Functional analyses of significantly enriched trends. The top 8 significant terms at the mRNA level. The size of dots shows the number of DEGs clustered in the same terms. The color of dots indicates the <span class="html-italic">p</span>-value.</p> Full article ">Figure 5
<p>Construction and visualization of lncRNA–mRNA–circRNA network. (<b>A</b>) lncRNA–mRNA–circRNA network structure. (<b>B</b>) The betweenness centrality difference among lncRNAs, mRNAs, and circRNAs. (<b>C</b>) The closeness centrality difference among lncRNAs, mRNAs, and circRNAs. (<b>D</b>) The degree centrality difference among lncRNAs, mRNAs, and circRNAs. (<b>E</b>) Node degree of the lncRNAs, mRNAs, and circRNAs.</p> Full article ">Figure 6
<p>Comparison and identification of differentially expressed RNAs in high-intake feeding in lion-head geese liver tissue by qRT-PCR. (<b>A</b>) The RNA-seq results revealed the upregulated genes by FPKM. (<b>B</b>) Verification of the upregulated genes by RT-qPCR. (<b>C</b>) The RNA-seq results revealed the downregulated genes by FPKM. (<b>D</b>) Verification of the downregulated genes by RT-qPCR. Log2 FC is expressed as mean ± SD. n = 3. The statistical significance of all genes reached <span class="html-italic">p</span> < 0.05 (*** <span class="html-italic">p</span> < 0.001; ** <span class="html-italic">p</span> < 0.01; * <span class="html-italic">p</span> < 0.05).</p> Full article ">