HUMAN MUTATION 28(12), 1156^1170, 2007
REVIEW ARTICLE
Chasing Genes for Mood Disorders
and Schizophrenia in Genetically
Isolated Populations
Tine Venken1,2 and Jurgen Del-Favero1,2
1
Applied Molecular Genomics Group, Department of Molecular Genetics, VIB, Antwerpen, Belgium; 2University of Antwerp,
Antwerpen, Belgium
Communicated by Michael Dean
Major affective disorders and schizophrenia are among the most common brain diseases worldwide and their
predisposition is influenced by a complex interaction of genetic and environmental factors. So far, traditional linkage
mapping studies for these complex disorders have not achieved the same success as the positional cloning of genes
for Mendelian diseases. The struggle to identify susceptibility genes for complex disorders has stimulated the
development of alternative approaches, including studies in genetically isolated populations. Since isolated
populations are likely to have both a reduced number of genetic vulnerability factors and environmental background
and are therefore considered to be more homogeneous compared to outbred populations, the use of isolated
populations in genetic studies is expected to improve the chance of finding susceptibility loci and genes. Here we
review the role of isolated populations, based on linkage and association studies, in the identification of susceptibility
r 2007 Wiley-Liss, Inc.
genes for bipolar disorder and schizophrenia. Hum Mutat 28(12), 1156–1170, 2007.
KEY
WORDS:
complex genetics; isolated population; association studies; linkage analysis; bipolar disorder;
schizophrenia
INTRODUCTION
Complex Genetics
Hereditary diseases can be divided into three categories: genomic
disorders, monogenetic disorders, and multifactorial or complex
disorders. Genomic disorders include deletions, insertions, duplications, inversions, and translocations. Monogenic disorders are rare
disorders that can be subdivided into disorders with a simple
Mendelian mode of inheritance and disorders with a less clear
pattern of inheritance due to imprinting, mitochondrial inheritance,
phenocopies, genetic heterogeneity, variable clinical expression, age
at onset, and incomplete penetrance. These complicating factors are
also characteristic of complex disorders. Furthermore, the predisposition of complex disorders is determined by a complex
interaction of multiple genetic and environmental factors. Therefore, the exact patterns of transmission, the specific number of
susceptibility loci, the recurrence risk ratio attributable to each
locus, and the degree of the interaction between loci in complex
disorders are unknown. Combined with the largely unknown
pathophysiology of complex disorders, positional cloning was the
method of choice in the past decade to identify disease-linked
chromosomal regions. However, this approach proved to be less
efficient for complex disorders as compared to the positional cloning
of genes for Mendelian diseases [Dean, 2003].
MAJOR AFFECTIVE DISORDERS
AND SCHIZOPHRENIA
The spectrum of major affective disorders and schizophrenia
(SZ) are among the most common brain diseases worldwide,
r 2007 WILEY-LISS, INC.
constituting a major public health problem with a high rate of
morbidity and mortality [Muller-Oerlinghausen et al., 2002].
Although there is evidence of clinical overlap between different
psychiatric disorders, traditionally psychiatrists distinguish subtypes based on clinical signs and symptoms, which is based on the
distinction made by Kraeplin between the affective disorders, such
as bipolar (BP) and unipolar (UP) disorder, and SZ as different
clinical entities. These entities are categorized in classification
systems such as the Diagnostic and Statistical Manual of Mental
Diseases (DSM).
BP disorder or manic depression (MIM] 125480) is, with a
lifetime prevalence of 0.5 to 1.5%, equally frequent in males and
females, a chronic psychiatric disorder, and characterized
by disturbances in mood, ranging from mania to a severe state
of depression, often accompanied by psychotic features, including
delusions and/or hallucinations [Ketter et al., 2004] and cognitive
Received 22 January 2007; accepted revised manuscript 24 May
2007.
Correspondence to: Prof. Dr. Ir. Jurgen Del-Favero PhD, Applied
Molecular Genomics Group,VIB - Department of Molecular Genetics,
University of Antwerp - Campus CDE, Parking P4, Building V, Room
1.14, Universiteitsplein 1, BE-2610 Antwerpen, Belgium.
E-mail: jurgen.delfavero@ua.ac.be
Grant sponsors: InterUniversity Attraction Poles Program P5/19,
Federal Science Policy O⁄ce; Fund for Scienti¢c Research
Flanders (FWO); Special Research Fund of the University of Antwerp
(Belgium).
DOI 10.1002/humu.20582
Published online 20 July 2007 in Wiley InterScience (www.interscience.
wiley.com).
HUMAN MUTATION 28(12), 1156^1170, 2007
impairment [MacQueen et al., 2005]. A typical BP patient
alternates a manic episode with one or more depressive episodes,
but the latter is not necessary for diagnosis of BP disorder. Patients
with BP disorder type I (BPI) suffer from severe phases of mania,
while in case of type II (BPII) the manic episodes are less severe
(called hypomania). On the other hand, patients with UP disorder
(MIM] 608520) present only recurrent episodes of major
depression. UP disorder is, with a mean lifetime prevalence of
about 10%, more common than BP disorder, occurring twice as
much in females compared to males.
SZ (MIM] 181500) has a lifetime prevalence of 1%, equally
frequent in males and females, and is characterized by positive
symptoms, including delusions, hallucinations and disturbances in
thoughts, and negative symptoms such as lack of motivation and
poor social and occupational adjustment, as well as cognitive
dysfunction.
Although the etiology and pathophysiology of major affective
disorders and SZ are still unknown, twin, adoption, and family
studies supported for strong genetic determinants. These studies
indicate that there is between 30 and 50% heritability for UP
disorder, between 60 and 85% for BP disorder, and 80% for SZ and
that relatives of probands have an increased risk for other
psychiatric disorders among the spectrum [Shih et al., 2004;
Smoller and Finn, 2003]. The exact pattern of transmission,
however, is complex, likely involving both multiple genes and
environmental factors.
Furthermore, some patients suffer from schizoaffective (SA)
disorder, which is characterized by both mood and psychotic
features; therefore, SA disorder has overlapping clinical features of
both BP disorder and SZ. Common clinical features for the different
clinical entities, the existence of patients with SA disorder, the
clustering of psychiatric disorders in families with an increased risk
for relatives for other psychiatric disorders among the spectrum, as
well as a twin study [Cardno et al., 2002] suggest an overlap
between these disorders, clinically as well as biologically. Therefore,
some genes might have relative specificity for either BP disorder or
SZ, while other genes might confer risk across the spectrum of
psychiatric disorders [Craddock et al., 2005].
Increasing Homogeneity in Complex Genetics
The large efforts to identify susceptibility genes for complex
disorders have stimulated the development of alternative
approaches. Since genetic heterogeneity has been a major problem
in complex genetics, researchers have tried to obtain increased
homogeneity in their study samples to reduce complexity.
In the case of BP disorder, for example, studies have been
conducted in patients with an early age at onset, which is
associated with increased severity, resistance to mood stabilizers,
increased anxiety, poorer functioning, and increased risk of
psychiatric hospitalization. Additionally, relatives of early-onset
probands are more likely to develop affective disorders than
relatives of late-onset probands. Therefore, genetic factors can
play a greater role in early-onset forms than in late-onset forms
and early-onset forms may thus be considered as a more
homogeneous subgroup [Lin et al., 2005].
Other researchers have departed from the DSM-based clinical
boundaries and studied patients with a specific common clinical
feature such as psychosis, which is characteristic for SZ, SA
disorder, and some severe cases of BP [Hamshere et al., 2005].
Additionally, the occurrence of psychotic features has been used as
subphenotype for BP disorder to stratify the study sample for
disease severity [Potash et al., 2003].
1157
Recently, alternative phenotypic definitions have been developed that might be more closely related to biological systems
(endophenotypes), such as sensory gating deficits or working
memory dysfunction [Gottesman and Gould, 2003].
Isolated Populations
Another approach to reduce underlying genetic complexity is
the use of isolated populations. Isolated populations originated
from a small number of founder couples. Throughout history, many
populations, including isolated as well as outbred populations,
undergo alternating periods of bottlenecks with rapid expansion of
the population. These bottlenecks, invoked by, e.g., war,
epidemics, or famine, are characterized by a reduction in
population size followed by the survival and expansion of a small
random subset of the original population. Due to increased
inbreeding and genetic drift in isolates, certain alleles will be
present more frequently in the population, while others are lost,
increasing genetic homogeneity. Additionally, due to geographic,
cultural, or religious barriers, isolated populations did not
experience a large degree of admixture with surrounding
populations for a number of generations, resulting in a relatively
small gene pool (founder effect) [Peltonen et al., 2000].
Monogenetic disease genes have earlier been mapped using
isolated populations, in which individuals tend to share ancestral
haplotypes derived from a handful of founders. Since a rare
monogenetic disease is almost always caused by a single founder
gene or mutation in an isolate, haplotype mapping has been
successful in mapping rare disease genes, using only a few
distantly-related affected individuals with a low density simple
tandem repeat (STR)-map (10 cM density) [Houwen et al.,
1994].
Despite the genetic and environmental complexities, geneticists
have tried mapping genes for several complex diseases, using
population isolates since they are likely to have both a reduced
number of genetic vulnerability factors and environmental background and are therefore considered more homogeneous compared
to outbred populations. Isolated populations have indeed already
been used successfully to map genetic susceptibility factors in some
complex disorders, such as type 2 diabetes [Grant et al., 2006;
Horikawa et al., 2000] and stroke [Gretarsdottir et al., 2003].
Major Linkage and Association Findings in Bipolar
Disorder and Schizophrenia
The complex genetic etiology of BP disorder and SZ might
explain the numerous linkage signals throughout the genome that
have been reported by independent research groups over the years.
Nevertheless, some genomic regions have gained consistent
support from independent studies and/or large meta-analyses
based on STR-based genome scans. These loci for SZ include
chromosomes 1p13.3–q23.3, 2p12–q22.1, 6p24–p22, and
8p22–p21.1. On the other hand strong evidence exists for
genomic regions related to BP disorder on chromosomes
9p22.3–p21.1, 10q11.21–q22.1, 12q21–q24, 14q24.1–q32.12,
and 18. Regions for SZ and BP, as well as for SA disorder, have
been identified on chromosomes 1q32–q42.1, 6q16–q27, 8q24,
13q12–q34, and 22q11–q22, suggesting that these loci harbor a
susceptibility gene for these psychiatric disorders in general
[Badner and Gershon, 2002; Craddock and Forty, 2006; Lewis
et al., 2003; McQueen et al., 2005; Riley and Kendler, 2006;
Segurado et al., 2003]. For some of these loci, putative
susceptibility genes have been identified for BP disorder and/or
SZ with significant evidence from studies conducted in isolated
Human Mutation DOI 10.1002/humu
1158
HUMAN MUTATION 28(12), 1156^1170, 2007
TABLE 1.
Susceptibility Loci Identi¢ed for BP Disorder and/or SZ With Signi¢cant Evidence in Isolated Populations
Locus
Disorder
Supported by a meta-analysis
Genea
Locusb
Evidence in isolated populations
1p13.3^q23.3
SZ1BP
Lewis et al. [2003]
NOS1AP
1q23.3
1q32^q42.1
5q23.2^q34
SZ1SA
SZ1BP
DISC1
1q42.1
Lewis et al. [2003]
6q16^q27
SZ1BP
McQueen et al. [2005]
QKI
AHI1
6q26^q27
6q23.3
8p22^p11
10q11.21^q22.1
SZ
SZ1BP
Badner and Gershon [2002]
Segurado et al. [2003]
NRG1
GRID1
8p21^p12
10q22
12q21^q24
BP
P2RX7
DAO
TPH2
12q24
12q24
12q21.1
13q12^q34
SZ1BP
Badner and Gershon [2002]
DAOA
13q34
18
BP
Segurado et al. [2003]
Quebec
Ashkenazi Jews
Finland
Several Central American isolates
Portuguese islands
Finland
Northern Sweden
Israeli Arabs
Portuguese islands
Iceland
Ashkenazi Jews
Israeli Arabs, Faroe Islands, Cuba
Quebec
Quebec
Northern Sweden, Quebec
Faroe Islands, Finland
Quebec
Micronesian islands
Several Central American isolates
Ashkenazi Jews
Quebec
a
Gene symbols according to the HUGO ^ Human Genome Nomenclature Committee website (www.gene.ucl.ac.uk/nomenclature).
Cytogenetic location of the gene according to NCBI (www.ncbi.nlm.nih.gov).
b
populations (Table 1). Moreover, the association findings of the
genes neuregulin 1 and D-amino-acid oxidase activator were
originally identified in an isolated population through a classical
positional cloning strategy.
CANDIDATE LOCI AND GENES FOR BIPOLAR
DISORDER AND SCHIZOPHRENIA IN ISOLATED
POPULATIONS
The chromosomal loci discussed in this review were primary
selected based on four meta-analyses of STR-based genome scans.
The first reported meta-analysis was a probability analysis, which
combined reported P-values across 11 BP genome scans and 18 SZ
scans in regions with clusters of positive scores. Significant
evidence was found for loci on 13q and 22q for both BP disorder
and SZ and on 8p for SZ only [Badner and Gershon, 2002].
Second, two rank-based genome scan meta-analyses were
simultaneously published for SZ [Lewis et al., 2003] and BP
disorder [Segurado et al., 2003]. The meta-analysis for SZ was
based on 20 genome scans and resulted in genomewide significant
evidence for linkage on chromosome 2p11–q22, but also clusters of
nominally significant P values on chromosomes 5q, 3p, 11q, 6p,
1q, 22q, 8p, 20q, and 14p [Lewis et al., 2003]. Although none of
the linked regions reached the criteria for genomewide significance
in the rank-based meta-analysis of 18 BP disorder genome scans,
the most significant loci (Po0.01) were observed on chromosomes
9p, 10q, 14q, and regions on chromosome 18 [Segurado et al.,
2003]. Third, a combined analysis using the original genotype data
from 11 BP genome scans was conducted, resulting in genomewide
significant linkage to BP on chromosomes 6q and 8q [McQueen
et al., 2005]. Altogether, several of these loci have also been
identified in isolated populations for BP disorder and/or SZ and
replicated in several other populations, including chromosomes
1p13.3–q23.3, 5q23.2–q34, 6q16–q27, 8p22–p21.1, 10q11.21–
q22.1, 13q14–q34, and chromosome 18, with or without the
identification of a putative susceptibility gene (Table 1).
Though not significant in any meta-analysis, genomewide
significant linkage was originally identified in an isolated
population on chromosomes 12q21–q24 and repeatedly replicated
Human Mutation DOI 10.1002/humu
by independent research groups with the identification of a
putative susceptibility gene. Last but not least, although chromosome 1q32–q42.1 was not originally identified in an isolated
population nor supported by any meta-analysis, linkage and
association was repeatedly identified in the Finnish isolated
population (Table 1).
We highlight and discuss in detail the linkage and association
findings on these loci in chromosomal order.
1q32^q42.1
A balanced translocation t(1;11)(q42.1;q14.3), segregating with
major mental illness in a large pedigree from Scotland, started the
interest in chromosome 1q in psychiatric disorders [St Clair et al.,
1990]. The chromosome 1 breakpoint is located at 1q42.1 and the
significant linkage signal increased further after including BP and
UP patients in the analysis together with SZ patients [Blackwood
et al., 2001]. This locus gained great support from linkage and
association studies performed in Finnish families [Hovatta et al.,
1999]. The roots of the Finnish population reach over 2,000 years
with an early settlement in south eastern Finland. In the 16th
century, internal migrations by groups of farmers from the
Southeast toward the North gave rise to regional subisolates (late
settlement). Since then, a national system of population records
was established, enabling the reconstruction of genealogical trees
of very large multigenerational pedigrees today. In history, Finland
has remained relatively genetically homogeneous compared
to their neighboring countries due to geographical barriers, such
as the many lakes, and sociocultural reasons, such as the Finnish
language (Table 2) [Peltonen et al., 2000]. Hovatta et al. [1999]
originally identified through linkage analysis a susceptibility locus
on chromosome 1q32–q42 for SZ in an internal isolate of Finland
founded by approximately 40 families at the end of the 17th
century. In the next years linkage analyses performed in additional
families, from subisolates as well as from the early settlement of
Finland, further supported evidence for this SZ locus [Ekelund
et al., 2000, 2001, 2004; Paunio et al., 2001]. Additional evidence
for this susceptibility locus came from linkage studies in outbred
populations [Detera-Wadleigh et al., 1999; Gurling et al., 2001;
Hamshere et al., 2005].
HUMAN MUTATION 28(12), 1156^1170, 2007
TABLE 2.
Population
Antioquia (Colombia)
Ashkenazi Jews
CVCR (Costa Rica)
Faroe Islands
Finland^early
Finland^late
Iceland
Israeli Arabs
Northern Sweden
Palau, Micronesia
Portuguese islands
SLSJ (Quebec)
1159
Overview Characteristics of the Isolated Populations Used for Genetic Analyses in BP Disorder and SZ
Parent population
Spanish1Amerindian
Rhineland Jews
Spanish1Amerindian
Scandinavian
Middle Europe
Finland^early
Scandinavian1Gaelic
Middle East
Finnish1Saamis
Asian
Portugal
European
] of founders
Not known
Not known
286 families
Several 100
Several 100
40^60 couples
8,000^20,000
Not known
Several 100
Several 100
Not known
Several 100
Further research in the Scottish pedigree led to the identification of two genes that were disrupted at the translocation
breakpoint on chromosome 1q42.1, known as ‘‘disrupted in
schizophrenia’’ (DISC1 [MIM] 605210] and DISC2 [MIM]
606271]) [Millar et al., 2000]. DISC2, which overlaps with
DISC1 but transcribed in the opposite direction, is a small RNAonly gene that probably acts as a negative regulator of DISC1. The
t(1;11) translocation directly disrupts DISC1 within intron 8,
removing exons 9 to 13 to chromosome 11. Although an abnormal
truncated protein product could not be found, a 50% reduction
of DISC1 expression levels was observed, suggesting haploinsufficiency as the most probable disease mechanism [Millar et al.,
2005]. An exon 12 frameshift mutation has also been identified,
which introduces a stop codon, resulting in reduced expression
levels of DISC1 without the presence of a truncated protein
product [Sachs et al., 2005]. DISC1 interacts with a number
of proteins in neurobiological pathways [reviewed by Porteous
et al., 2006].
Additional support for the involvement of DISC1 came from
association studies performed in the Finnish population [Ekelund
et al., 2004; Hennah et al., 2003], as well as in outbred
populations [reviewed by Porteous et al., 2006].
Of note is that unaffected t(1;11) carriers in the original
pedigree showed an altered event related potential (ERP) P300
comparable with SZ and BP patients, which is a measure for
cognitive abilities [Blackwood et al., 2001]. Since then, several
studies in the Finnish population have shown evidence for linkage
between the DISC1 locus and impaired working memory function
[Gasperoni et al., 2003], visual working memory [Hennah et al.,
2005], verbal learning memory [Paunio et al., 2004], and shortand long-term memory [Cannon et al., 2005].
1p13.3^q23.3
More centromeric to 1q32–q42, clusters of nominally significant
P values were found on chromosome 1p13.3–q23.3 in the SZ
meta-analysis of Lewis et al. [2003]. Originally, a genomewide
significant linkage signal was identified for SZ on chromosome
1q22 in 22 multigenerational Canadian families with Celtic and
German ancestry, living in the isolated region of eastern Quebec
[Brzustowicz et al., 2000]. Linkage studies in inbred [Fallin et al.,
2004] and outbred [Gurling et al., 2001; Shaw et al., 1998]
populations independently provided additional support for linkage
of BP disorder and SZ with chromosome 1q21–q23. However, this
region was not replicated by a large collaborative SZ study
[Levinson et al., 2002].
Further follow-up of the candidate region by linkage disequilibrium (LD) mapping in the Canadian population led to the
] of generations
20
50
15^20
50^60
80^100
10^20
50^60
o30
o100
o100
20^40
10^20
Current population size
Age of population (years)
45,000,000
11,200,000
3,000,000
45,000
45,000,000
o50,000
270,000
90,000
257,000
23,000
550.000
285,000
200^400
1,150
200^400
1,000
2,000
330
41,000
200
1,500
2,000
600
170
identification of NOS1AP as a gene for SZ susceptibility (earlier
referred to as CAPON; MIM] 605551) [Brzustowicz et al., 2004],
which was replicated in a Han Chinese population [Zheng et al.,
2005]. However, no evidence for association was found in a UK
sample [Puri et al., 2007]. NOS1AP encodes the nitric oxide
synthase 1 (neuronal) adaptor protein and negatively regulates Nmethyl D-aspartate (NMDA)-type receptor-mediated glutamate
neurotransmission by binding nitric oxide synthase. Expression
analysis revealed overexpression of NOS1AP in brain of both SZ
and BP patients, suggesting impaired NMDA receptor-mediated
glutamate receptor neurotransmission [Xu et al., 2005]. This is in
line with the hypothesis of a hypofunction of NMDA-mediated
neurotransmission in the pathophysiology of these psychiatric
disorders.
5q23.2^q34
Lewis et al. [2003] reported suggestive evidence for linkage on
chromosome 5q23.2–q34 in their SZ meta-analysis, which is also a
promising candidate region for SZ and BP disorder, mainly
supported by linkage studies performed in Central American
populations with a high degree of Spanish origin.
Evidence for chromosome 5q as a SZ susceptibility locus has
emerged from a linkage study of SZ families from the Central
Valley of Costa Rica (CVCR) [DeLisi et al., 2002]. This very
young population was founded by a limited number of Spanish and
Amerindian families in the 16th century. Since the CVCR area is
separated from the coastal regions by mountains, this population
was kept geographically isolated until at least the late 19th
century. Therefore, the 3 million people today almost entirely
descend from 4,000 individuals from CVCR alive in 1700. The
limited number of generations since founding (o20 generations)
result in wider LD regions compared to other populations, enabling
genomewide LD mapping using low-density STR-maps (Table 2)
[Service et al., 2001].
Further support for a SZ-locus on chromosome 5q23.2–q35 has
come from another population, of Mexican and Central American
ancestry, with a high degree of Spanish and Amerindian origin
[Escamilla et al., 2007], and other isolated populations, including
the Portuguese islands [Sklar et al., 2004], Palau [Devlin et al.,
2002], and Finland [Paunio et al., 2001], as well as from outbred
populations [Gurling et al., 2001; Schwab et al., 1997; Straub
et al., 1997].
The population of Palau, which is an archipelago of islands in
Micronesia, is believed to have originated from at most a few
hundred initial Asian founders 2,000 years ago. In history, the
populations on these islands have developed in relative isolation,
even from other Micronesian populations. A genetic bottleneck
Human Mutation DOI 10.1002/humu
1160
HUMAN MUTATION 28(12), 1156^1170, 2007
due to a typhoon and exposure to Western diseases led to a
dramatic decrease of the Micronesian population in the 19th
century, after which the population increased to its current size of
about 23,000 (Table 2) [Devlin et al., 2002].
Also for BP disorder, suggestive evidence for linkage and
increased allele sharing identical by descent (IBD) among patients
with BPI disorder was observed on chromosome 5q31–q33 in the
isolated population of the CVCR [Garner et al., 2001; Hong et al.,
2004]. The locus on chromosome 5q31–q33 was independently
supported by genetic analysis in Colombian BP families, showing
genomewide significant evidence for linkage on chromosome
5q31–q34 [Herzberg et al., 2006]. These families were ascertained
in Antioquia, a historically isolated population from North West
Colombia. This population is, like the CVCR population, a very
young population (o20 generations), founded by a limited
number of Spanish and Amerindian families in the 16th century
and grown in relative isolation until recently (Table 2) [CarvajalCarmona et al., 2003]. Genetic studies showed a close relatedness
between the Antioquian and CVCR population, with similar allele
frequency distributions and LD patterns [Service et al., 2006].
6q16^q27
The long arm of chromosome 6 has gained interest in BP
disorder and SZ in the past few years. Moreover, chromosome 6q
achieved genomewide significance in the most recent metaanalysis [McQueen et al., 2005], making it one of the best
supported regions for BP disorder. Interestingly, the 6q locus has
emerged from multiple genetic studies performed in several
isolated populations.
The 6q locus was first identified as a susceptibility locus for SZ
in the geographically isolated county of Västerbotten in northern
Sweden (Table 2). The earliest settlements in the county of
Västerbotten occurred at least 8,000 years ago, but the current
population dates back from a population admixture between Finns
and Swedish Saamis approximately 1,500 years ago. This region
has been historically and culturally an isolated area for a long time
and remained isolated from other regions until the last century.
Only after 1930, there has been a considerable decrease in
isolation and inbreeding [Nylander and Beckman, 1991]. Like the
Finnish population, the current northern Swedish population is a
relatively old population (r100 generations) and Sweden also has
a national system of population records dating back to the 16th
century, which enables the reconstruction of genealogical trees for
very large multigenerational pedigrees today (Table 2).
A genome scan performed in a large 12-generation pedigree
originating from northern Sweden pointed to a susceptibility locus
on chromosome 6q25–q27 for SZ with genomewide significance
[Lindholm et al., 2001] and a common ancestral haplotype
inherited by the SZ patients in this pedigree [Lindholm et al.,
2004]. Further fine mapping resulted in a 500-kb IBD haplotype,
shared among the majority of the patients in the large family, and
subsequent analysis in unrelated nuclear families from the same
geographical area showed association of this haplotype with SZ.
Quantitative PCR (QPCR)-based expression analysis of the only
gene located in this region, the quaking homolog, KH domain
RNA binding (mouse) (QKI; MIM] 609590), showed decreased
expression levels of two QKI splice variants (QKI-7kb and QKI7kb-B) in the frontal cortex of SZ patients [Aberg et al., 2006b].
Furthermore, the splice variant QKI-7kb was shown to be
responsible for decreased expression of oligodendrocyte-related
and, in particular, myelin-related genes in the frontal cortex of SZ
patients [Aberg et al., 2006a]. Together, these results suggest that
Human Mutation DOI 10.1002/humu
QKI expression levels regulate oligodendrocyte differentiation and
maturation in human brain, in a similar way as seen in the mouse.
Myelin and oligodendrocyte dysfunction have been suggested as a
pathomechanism for the development of SZ [reviewed in McInnes
and Lauriat, 2006].
Recently, our group performed a genomewide scan in nine
multigenerational families, segregating affective disorders and
originating from the same geographic region in northern Sweden,
and obtained significant evidence for linkage on chromosome
6q23–q24. Interestingly, 72% of the BP patients showed psychotic
features in our study [Venken et al., 2005]. Together, these data
support the presence of a shared susceptibility gene on chromosome 6q for affective disorders and SZ in the northern Swedish
population. However, whether QKI is also associated with affective
disorders in the northern Swedish population needs to be
elucidated.
Additional support for chromosome 6q as a susceptibility locus
for SZ came from the relatively homogeneous Arab Israeli
population. This population is an ethnically homogeneous group,
originating from towns that were founded approximately 200 to
250 years ago by a limited number of families. A high birth rate, an
unusually high level of consanguinity and a low rate of
intermarriage with other ethnic populations in Israel characterize
these communities (Table 2). Linkage analysis in 21 SZ families
from this population resulted in genomewide significant linkage on
6q23 [Lerer et al., 2003]. Subsequent fine mapping in this region
revealed a higher linkage signal in a more delineated region
of 7 Mb linked with SZ [Levi et al., 2005]. Further investigation
of this candidate region in an extended set of nuclear families of
the inbred Arab Israeli population showed significant association
with SNPs and haplotypes in a 500-kb region. Association analysis
in a replication sample of 209 nuclear Arab outbred families
segregating SZ resulted in significantly associated haplotypes
comprised of the same SNPs that were associated in the inbred
families. However, no shared haplotype was observed between the
two populations. This region harbors two genes, including the
brain-expressed Abelson helper integration site 1 (AHI1; MIM]
608894), which might be involved in brain development, and the
adjacent primate-specific gene C6orf217 with unknown function.
Since these two genes are transcribed in opposite orientations,
their regulatory regions might overlap and both genes might
influence the expression of each other [Amann-Zalcenstein et al.,
2006].
Also, significant evidence for linkage at chromosome 6q with
BP disorder has emerged from families originating from the
Portuguese islands. These islands include Madeira and the Azores,
a nine-island archipelago located in the Atlantic Ocean. They
have a similar history, with a settlement by Portuguese founders
in the early 1400s, church records, and a centralized health
system (Table 2) [Pato et al., 1997]. A first genomewide scan in
16 multigenerational families identified a linkage signal on
chromosome 6q16–q21, which increased further after fine
mapping [Pato et al., 2004]. In a follow-up study [Middleton
et al., 2004], a 10K genomewide SNP assay was used for
linkage analysis in an extended sample of 25 families, of which
12 families were originally used in the study of Pato et al. [2004].
These 12 families enabled researchers to make a comparison
between results of the traditional 10-cM density STR genomewide
scan and the 10K SNP chip. Using the high density SNP assay, the
linkage signal on chromosome 6 increased to genomewide
significance on chromosome 6q22 and the complete set of
25 families even further strengthened these findings [Middleton
et al., 2004].
HUMAN MUTATION 28(12), 1156^1170, 2007
Chromosome 6q has gained further evidence for linkage for BP
disorder and SZ from outbred populations of Danish [Ewald et al.,
2002a], Austrian [Bailer et al., 2002], U.S. [Dick et al., 2003], and
UK/Irish origin [Lambert et al., 2005]. Together, these findings
provide strong support for at least one susceptibility gene on
chromosome 6q for affective disorders and/or SZ.
8p22^p21.1
Two genome scan–based meta-analyses identified chromosome
8p as a susceptibility locus for SZ [Badner and Gershon, 2002;
Lewis et al., 2003]. Chromosome 8p22–p21.1 was originally
identified in a SZ genome scan in U.S. families, resulting in
suggestive evidence for linkage [Pulver et al., 1995], which
increased to a significant level after fine mapping [Blouin et al.,
1998]. This locus has gained support for linkage with SZ by
independent studies [reviewed by Harrison and Law, 2006].
A significant contribution to these findings was provided by
genetic analysis in the Icelandic population. Iceland was founded
more than 1,100 years ago by a limited number of settlers of mainly
Scandinavian males and Gaelic females. Little immigration has
occurred in the past 11 centuries and the population expanded
rapidly after 1850 to its current size of 290,000 inhabitants. It
has been shown that the Icelandic population is characterized by
low genetic diversity [Helgason et al., 2003], likely due to its
history and geographical isolation. Moreover, the Icelandic health
system is organized around a large genealogy database covering the
entire present day population and stretching back to the founding
of the country. Along with these genealogical records, national
medical data are combined with genetic research in large extended
pedigrees by the deCODE project (Table 2) [Peltonen
et al., 2000].
Stefansson et al. [2002] performed a genomewide scan in 33
Icelandic SZ families resulting in a suggestive linkage peak on
chromosome 8p21–p12. Subsequent LD mapping across this locus
in an Icelandic SZ population resulted in the identification of
neuregulin 1 (NRG1; MIM] 142445) as a SZ candidate gene, with
a seven-marker ‘‘high-risk’’ haplotype located at the 50 end of
NRG1 (HAPICE, represented by a ‘‘core’’ haplotype of three
markers, including one SNP and two STRs). None of the
individual SNPs showed significant association with SZ as high
as HAPICE, suggesting that neither one of the identified variants
was the functional polymorphism. However, hypomorphic mice
(mutant mice heterozygous for either NRG1 or its receptor ErbB4)
exhibited behavioral abnormalities, which overlap with mouse
models for SZ, and these were partially reversible with clozapine,
an atypical antipsychotic drug. Furthermore, binding studies
showed that the number of NMDA receptors in the NRG1
hypomorphic mice was reduced, which was also observed in the
brain of SZ patients [Ibrahim et al., 2000; Stefansson et al., 2002].
The human NRG1 gene is a large gene covering approximately
1.4 Mb of the genome and contains more than 20 exons which
result in multiple functionally distinct isoforms, detected in
neurons of many areas of developing and adult human brain.
NRG1 is a growth factor by acting as a ligand for ErbB receptor
tyrosine kinases. NRG1-mediated activation of these epidermal
growth factor (EGF) receptors modulates postsynaptic transcriptional activity. The large number of NRG1 isoforms and signaling
mechanisms correspond to the wide range of its functional effects.
These include neuronal and glial functions, ranging from
development (such as neuronal specification and migration, axon
guidance, synaptogenesis, neuron-glial signaling, glial development
and differentiation, and myelination) to neurotransmission and
1161
synaptic plasticity (such as regulation of NMDA, GABA, and
nicotinic receptors, and modulation of long-term potentiation).
These processes, influenced by NRG1, overlap with pathways and
processes, which have been implicated before in SZ. The NRG1
neurobiology in SZ is further reviewed in detail by Harrison and
Law [2006]. However, at this moment it remains impossible to
predict which of the specific NRG1 functions could be most
relevant to SZ.
Overall, the majority of reported association studies, particularly
in Caucasians, found association with the 50 region covering the
first two exons of NRG1. In contrast, studies in the Chinese
population found association in the 30 region. However, two
recently published meta-analyses of association studies gave strong
support for association between NRG1 and SZ [Li et al., 2006;
Munafo et al., 2006]. Furthermore, several positive [Addington et
al., 2007; Fukui et al., 2006; Kim et al., 2006; Walss-Bass et al.,
2006] as well as two negative association studies [Duan et al.,
2005; Ingason et al., 2006] have been reported since then.
The core HAPICE risk haplotype was also associated with BP
disorder, with stronger evidence in BP patients with psychotic
features that were predominantly mood incongruent [Green et al.,
2005]. Recently, a haplotype tagging SNP (htSNP)-based association study of NRG1 in a second cohort of the Scottish population
showed association with both BP disorder and SZ in a 136-kb
region in the 30 region of NRG1 [Thomson et al., 2007].
Altogether, these results argued convincingly that NRG1 is likely a
susceptibility gene for SZ and BP disorder.
10q11.21^q22.1
Although none of the linked regions reached the criteria for
genomewide significance in the BP meta-analysis of Segurado et al.
[2003], chromosome 10q11.21–q22.1 was one of the most
significant loci. Linkage of BP disorder and SZ to chromosome
10q is observed in several ethnic populations, ranging from 10q21
to 10q26 and has gained great support from the Ashkenazi Jewish
population. The current Ashkenazi Jewish population, living
mostly in Central and Eastern Europe and the United States,
descended from a small founder population about 500 years ago.
The rate of admixture is estimated to be low probably due to the
cultural and social isolation of this population characterized by
endogamy. Despite migration and spacing all over the world, the
Ashkenazi Jewish population has maintained their religious as well
as genetic identity (Table 2) [Ostrer, 2001].
Fallin et al. [2003] specifically studied linkage in 29 Ashkenazi
Jewish SZ families and observed significant evidence for linkage in
a 12.2-Mb region on chromosome 10q22. Additionally, in a linkage
study on BP disorder of the same research group in 41 Ashkenazi
Jewish families, support for linkage was found for the same region
[Fallin et al., 2004]. Independently, our group provided evidence
for genomewide significant linkage with a 14-marker haplotype on
chromosome 10q21.3–q22.3, shared by the patients diagnosed
with affective disorders of a large multigenerational Ashkenazi
Jewish family [Venken et al., 2007]. Since reduced genetic
variation is expected in this population, a common susceptibility
gene on chromosome 10q22 for both BP disorder and SZ might be
present in this isolated population.
The 10q locus gained additional support through linkage in
several outbred populations [Cheng et al., 2006; Cichon et al.,
2001; Etain et al., 2006; Faraone et al., 2006; Kelsoe et al., 2001;
Liu et al., 2004; McInnis et al., 2003; Wildenauer and Schwab,
1999; Williams et al., 2003] as well as in isolated populations,
including in Arab Israeli SZ families [Lerer et al., 2003], in a large
Human Mutation DOI 10.1002/humu
1162
HUMAN MUTATION 28(12),1156^1170, 2007
BP pedigree from a homogeneous population in the eastern part of
Cuba [Marcheco-Teruel et al., 2006] and increased haplotype
sharing in patients with BP disorder and SZ from the isolated Faroe
Islands [Ewald et al., 2002b]. The Faroe Islands are a small group
of islands situated between Norway, Scotland, and Iceland. These
islands have been settled more than 1,000 years ago by a small
number of Scandinavian founders. In history, this population has
known a limited expansion through many generations, periods
with reduction in population size due to severe epidemics and
famine, little immigration, and recent expansion to its current size
of about 45,000. Also, the Faroe Islands have church records
dating back to the 17th century (Table 2) [Ewald et al., 2002b].
Recently, an association was reported for GRID1 (glutamate
receptor, ionotropic, delta 1; MIM] 610659) with SZ as well as
with BPI disorder and SZ/SA disorder combined in the Ashkenazi
Jewish population. GRID1 might be involved in glutamatergic
signaling, since it is highly related to ionotropic glutamate receptor
subunits [Fallin et al., 2005].
12q21^q24
Originally, a genomewide scan in a 10-generational BP pedigree,
originating from the founding population of the Saguenay-Lac-StJean (SLSJ) area in Eastern Quebec, resulted in genomewide
significant linkage on chromosome 12q23–q24 and was subsequently confirmed in a second large BP pedigree from the same
population [Morissette et al., 1999]. The settlement of this
founding population of European origin occurred around 1830 and
since this date genealogical records are available. Due to cultural
differences and religious beliefs with surrounding communities, the
SLSJ community remained isolated (Table 2). Reanalyzing the
undivided pedigree of the genome scan did not support the
presence of a shared haplotype by patients [Shink et al., 2003],
since two predominant haplotypes were originally seen in the
patients when the pedigree was subdivided in five branches
[Morissette et al., 1999]. Therefore, the researchers concluded
that, although less genetic heterogeneity would be expected by the
history of the population, genetic heterogeneity still exists in this
population [Shink et al., 2003]. However, a smaller IBD region
might be present in the patients, which might have been detected
using a denser marker map. Linkage analysis of 18 extra families
from the SLSJ area also showed genome-wide significant evidence
of a BP susceptibility locus on chromosome 12q23–q24 [Shink
et al., 2005b]. Additional fine mapping in 41 BP families and
association analysis in the SLSJ population pointed to a marker,
located within intron 9 of P2RX7 (purinergic receptor P2X, ligandgated ion channel, 7; MIM] 602566) [Shink et al., 2005a].
Further investigation of a 200-kb region around this marker
revealed significant association with SNPs and haplotypes in
P2RX7 and an overtransmission of the mutant allele of a
nonsynonymous polymorphism (p.Q460R) located in the intracellular C-terminal domain [Barden et al., 2006]. P2RX7 encodes
an ATP-gated P2X receptor, which is a cation-selective ion
channel with high calcium permeability when stimulated by
binding of ATP. Recent studies showed a neuroprotective effect of
ATP-induced P2RX7 by stimulating microglia and astrocytes in
neuronal survival and neurogenesis [Walter et al., 2004]. Since the
C-terminal domain is essential for normal function of the receptor,
p.Q460R might influence its function. Therefore, replication in
other association studies and further research of the functional
impact of p.Q460R on P2RX7 are necessary.
Additional support, although suggestive, for linkage with SZ and
BP disorder in this region was found in other families from the
Human Mutation DOI 10.1002/humu
Province of Quebec [Brzustowicz et al., 2000; Maziade et al.,
2005]. Independently, other research groups identified genomewide significant evidence for chromosome 12q23–q24 in outbred
populations for BP and UP disorder [Abkevich et al., 2003; Curtis
et al., 2003; Ewald et al., 2002a]. Of note is that linkage for BP
disorder was supported in Finnish families [Ekholm et al., 2003] as
well as increased haplotype sharing and allelic association on
12q24 was observed in BP patients from the isolated Faroe Islands
[Degn et al., 2001]. Also, chromosome 12q23–q24.1 is implicated
by two pedigrees, cosegregating both affective disorders and
Darier’s disease, which is a rare autosomal dominant skin disease
caused by mutations in the ATP2A2 gene (MIM] 108740)
encoding a Ca21 pump [Craddock et al., 1994; Jones et al., 2002].
Together, these findings strongly suggest the existence of a
susceptibility gene for major affective disorders and SZ on
chromosome 12q22–q24, with most evidence for BP disorder.
Although overlap exists between the candidate regions
identified in the different studies, the linkage signals extend over
a large distance on chromosome 12q. Therefore, other susceptibility genes on chromosome 12q might (additionally) be involved
in the predisposition of these psychiatric disorders, of which DAO
and TPH2 have gained support from isolated populations.
D-amino-acid oxidase (DAO; MIM] 124050) located on
chromosome 12q24 is involved in the glutamate pathway by
regulating the concentration of D-serine, a potent activator of
NMDA receptors. Chumakov et al. [2002] found significant
association between four SNPs in DAO and SZ in a French
Canadian population, also originating from the Province of
Quebec and experimentally shown to be genetically homogeneous,
along with some indication that SNPs in DAO and G72 (MIM]
607408) might act in combination to influence the risk for SZ. To
date, DAO is only investigated in a few association studies and
mainly in SZ patients, including one negative (Liu et al., 2006)
and two positive findings [Liu et al., 2004; Wood et al., 2007].
Additionally, a German study showed association between DAO
SNPs and SZ but not BP disorder [Schumacher et al., 2004].
Association between DAO and BP disorder was found in
a genetically homogeneous Ashkenazi Jewish population, further
supporting a role in the vulnerability of these psychiatric disorders
[Fallin et al., 2005].
The brain-specific tryptophan hydroxylase 2 (TPH2; MIM]
607478), cytogenetically located on chromosome 12q21.1, is the
rate-limiting enzyme in the serotonin biosynthetic pathway and is
involved in the regulation of serotonin levels. Zill et al. [2004a]
reported association with SNPs and haplotypes between TPH2 and
UP disorder. Since the positive linkage signal extended to
chromosome 12q21 in the large pedigree of the SLSJ area
[Morissette et al., 1999], this gene was further investigated in an
association study resulting in haplotype association between TPH2
and BP disorder in the SLSJ population [Harvey et al., 2004]. Our
group provided additional evidence by a htSNP based study
performed in a genetically homogeneous patient–control sample
from northern Sweden, covering maximal genetic variability of
TPH2. SNP based association was found in the upstream
regulatory region of TPH2 for both UP and BP disorder. Haplotype
analysis supported this significant result by the presence of a
protective haplotype [Van Den Bogaert et al., 2006]. Five
additional genetic association studies reported significant
associations between TPH2 and UP disorder, suicide, and BP
disorder, further supporting the involvement of TPH2 in the
pathogenesis of affective disorders [Ke et al., 2006; Lopez et al.,
2007; Zhang et al., 2005; Zhou et al., 2005b; Zill et al., 2004b].
Recently, Zhang et al. [2005] found a functional c.1322A4G
HUMAN MUTATION 28(12), 1156^1170, 2007
(p.R441H) human missense mutation linked to major depression.
However, several research groups did not find this mutation in a
total number of 4,227 UP patients, 480 BP patients, 425 patients
with other psychiatric disorders, and 1,789 control individuals,
suggesting that this variant is at best very rare [Delorme et al.,
2006; Garriock et al., 2005; Glatt et al., 2005; Van Den Bogaert
et al., 2005; Zhou et al., 2005a].
13q12^q34
Up to date, six SZ and 12 BP linkage studies with NPL or LOD
scores 42 on chromosome 13q have been reported by several
independent research groups and provided accumulating evidence
of significant linkage of these psychiatric disorders with a large
region on chromosome 13q, spanning more than 60 Mb ranging
from 13q12 to 13q34 [reviewed by Detera-Wadleigh and
McMahon, 2006]. One of these studies was performed in 21
Canadian families, originating from a genetically homogeneous
population of Eastern Quebec, with Celtic and German ancestry,
resulting in a significant LOD score to a broad spectrum of SZ at
chromosome 13q32 [Brzustowicz et al., 1999]. Additional support
to this linkage peak was provided for SZ as well as for BP disorder
by a meta-analysis [Badner and Gershon, 2002].
Chumakov et al. [2002] further investigated the distal 5-Mb
part of the 13q chromosomal candidate region, applying a dense
LD map of SNPs in a French Canadian population also originating
from the Province of Quebec and experimentally shown to be
genetically homogeneous. Association analysis revealed two
smaller regions with associated SNPs to SZ. Especially in one
of these regions the significant SNPs were clustered in a 65-kb
region in which haplotype analysis provided additional support for
significant association. Furthermore, the association with SZ in
this region was replicated in an association sample of Russian
origin by genotyping a subset of SNPs. The markers in this 65-kb
region were located in and around two novel genes, G72 (MIM]
607408) and G30 (MIM] 607415), which overlap and are
transcribed in opposite orientation. Moreover, G72 but not G30
gave a translation product, suggesting that only G72 is actively
translated. Further analysis revealed a functional interaction of
G72 with DAO, enhancing the activity of DAO [Chumakov et al.,
2002]. Subsequently, G72 has been named D-amino-acid oxidase
activator (DAOA). DAO oxidizes and regulates the concentration
of D-serine, a potent activator of the NMDA-type glutamate
receptor. NMDA receptors are ligand-gated ion channels, which
have a recognition site for glycine and D-serine. In the presence of
glutamate, binding of these ligands will stimulate ion flow. Since
expression studies showed increased transcription levels of DAOA
in the dorsolateral prefrontal cortex of postmortem brains from SZ
patients [Korostishevsky et al., 2004], DAOA might play a role in
the regulation of NMDA receptors by inhibiting its function
through stimulation of DAO-activity. This is in line with the
hypothesis of a hypofunction of NMDA-mediated neurotransmission in the pathophysiology of psychiatric disorders. Since G72
seems to be primate specific [Chumakov et al., 2002], no animal
studies have been performed yet to further investigate the
biological role of its protein product.
Association studies between DAOA and SZ as well as BP
disorder and panic disorder have subsequently been reported. A
meta-analysis was performed on a total number of 10 association
studies, showing highly significant evidence of association between
the DAOA-region and SZ and significant evidence of association
with BP disorder [Detera-Wadleigh and McMahon, 2006]. Since
this meta-analysis, one negative finding for SZ in a Taiwanese
1163
population [Liu et al., 2006] and several positive associations have
been published for BP disorder and SZ by independent research
groups in two isolated populations, the Ashkenazi Jewish [Fallin
et al., 2005] and Palestinian Arab population [Korostishevsky
et al., 2006] as well as in outbred populations [Hong et al., 2006;
Ma et al., 2006; Schulze et al., 2005; Williams et al., 2006]. At this
moment the finding for DAOA may be the strongest reported
evidence for association with BP disorder. However, there is
no consistency across studies concerning associated alleles or
haplotypes and, although one nonsynonymous variant (rs2391191,
p.K29R) was significantly associated with SZ, further unidentified
predisposing variants in this region need to be identified to explain
the complex pattern of association.
Chromosome 18
In the meta-analysis of Segurado et al. [2003], several regions
along chromosome 18 have been identified as loci potentially
harboring susceptibility genes for BP disorder, including 18pter-p11
and 18p11–q12.3. A genome scan performed in two large families
segregating BPI disorder from CVCR initially showed suggestive
evidence for linkage on chromosome 18q22–q23 and 18p11.3
[Freimer et al., 1996; McInnes et al., 1996]. These candidate
regions and chromosome 18 as a whole were followed up in the
CVCR by further fine mapping, extending the BP study sample or
using alternative methods, including LD-mapping and different
software algorithms. Together these results gave additional support
for the presence of a risk factor for BP disorder on chromosome
18pter–p11 [Escamilla et al., 2001; McInnes et al., 2001] and
18q22–q23 [Escamilla et al., 1999; Garner et al., 2001].
Furthermore, chromosome 18q12.2–q12.3 may also encompass a
susceptibility gene for BP disorder [Escamilla et al., 2001].
Recently, suggestive evidence for linkage was found with SZ and
psychosis on 18p11 in families of Mexican and Central American
origin, suggesting the presence of a common risk factor for these
severe psychiatric disorders in general on chromosome 18p11
inherited by the Spanish founders, who emigrated from the
Spanish empire to Central America in the 15th and 16th century
[Escamilla et al., 2007].
CONCLUSIONS
In the last decade, a number of independent replicated linkage
findings for major affective disorders and SZ have emerged.
Moreover, there is a growing body of evidence for the involvement
of a number of genes in the etiology of these psychiatric disorders.
However, the extensive genetic research has also resulted in many
inconsistent findings, including different associated susceptibility
alleles and/or haplotypes or even failure of replication. Isolated
populations have contributed to these positive as well as negative
findings. Importantly, promising findings in psychiatric genetics,
such as NRG1 and DAOA, were originally identified in an isolated
population. Though multiple independent research groups replicated these findings, several negative findings have been reported
as well. Furthermore, some putative susceptibility loci and/or genes
that were identified in isolated populations still need replication.
Are isolated populations then not as useful as one may think?
And are the genes or susceptibility alleles in these populations not
epidemiologically relevant?
Failure of replication might result from a spurious positive
finding in the original report, caused by type I error. On the other
hand, lack of statistical power of some individual studies, due to a
small sample size or high genetic heterogeneity in the studied
population, can also result in failure of replication. Furthermore a
Human Mutation DOI 10.1002/humu
1164
HUMAN MUTATION 28(12), 1156^1170, 2007
gene, which might play only a minor role in disease risk in the
general population, might be an important risk factor in an isolated
population. Therefore, it may occur as a common allele in the
isolated population but as a rare allele in the general population,
which will be difficult to detect in classical association studies.
Also, the identification of a gene or allele that clinically and/or
genetically is not as important in outbred populations as in isolated
populations might unravel biological pathways and uncover new
candidate genes, which might have a higher impact on disease risk
in general.
The failure to replicate some single-gene results might also
result from an underlying genetic architecture in which gene–gene
and/or gene–environment interactions are involved. Isolated
populations are characterized by increased homogeneity, since
they are likely to have both a reduced number of genetic
vulnerability factors and environmental background, increasing
the chance of finding the underlying genes. Therefore, it will be
important to take these interactions into account in genetic
studies, especially in heterogeneous outbred populations. Nevertheless, there will be more than one susceptibility gene that
increases disease risk in isolated populations as well, as is
evidenced in some studies where not all the patients of an
extended pedigree shared the same haplotype, augmenting
conditioned analysis in these populations as well.
In association studies, the individuals under study are intended
to be unrelated. However, now-living individuals of isolated
populations descended from a few common founders in history and
there is a higher probability that two random individuals are
related compared to outbred populations. Failing to take into
account extended familial relationships in association studies can
produce false-positive results, missing true associations while
overestimating the level of significance. Therefore, it is important
to use proper statistical methods for isolated populations
accounting for this genealogical relatedness between ‘‘unrelated’’
patients and control individuals [reviewed in Bourgain and Genin,
2005].
Though isolated populations are considered to be more
homogeneous than outbred populations, population structure
can still be present in these populations. Since individuals of an
isolate tend to mate with their neighbors and settle close to their
birthplaces over a number of generations, there is a closer
genealogical relationship to their neighbors with more IBD regions
and similar allele frequencies in certain subregions. However, there
might be small but measurable differences between subregions,
leading to false positive results for some diseases. This is evidenced
in Iceland, where based on genetic data considerable variance was
identified among ancestors within individuals but also among
counties, resulting in geographical stratification [Helgason et al.,
2005]. Therefore, sampling strategies need to take substructure
into account and genetic testing by genomic controls should be
applied, even in isolated populations.
The negative findings in replication studies also point to the
importance of a comprehensive study of a candidate locus/gene,
using an LD mapping strategy. Differences in ethnicity might
underlie some of the discrepant findings in association studies,
considering single marker and haplotype findings. In fact, the risk
factor might be present on a different ancestral haplotype or a new
mutation might have arisen in time in another ethnic population.
Therefore, researchers should not only use the associated variants
in their replication efforts, as has been the case in many follow-up
studies. Instead they should perform a systematic screening
covering complete genetic variability of the whole gene under
study. Until recently, this was a major effort, by first screening the
Human Mutation DOI 10.1002/humu
gene or region of interest for variants, followed by the
characterization of the LD pattern across the region, then defining
the set of variants that capture maximally the genetic variability
(tagging SNPs or tSNPs) to finally dissect the relevance of
associated variants to the disorder. This has now become feasible
with the International Haplotype Map (HapMap) project, which
provides publicly available genetic SNP data in four different
populations (www.hapmap.org) [International HapMap Consortium, 2003, 2005]. These data enable the characterization of the
LD pattern across the region of interest, without first systematically screening this region for variants. Furthermore, the same
set of tSNPs can then be used in independent replication studies as
well, facilitating comparison between studies and meta-analyses.
However, one can hypothesize that HapMap data might not be
applicable to other populations, such as isolated populations. This
can only be evidenced if all the HapMap SNPs are typed in the
populations of interest. Recently, studies have shown similar LD
patterns and block structure in an Australian and several
European populations as in the HapMap CEU population,
suggesting that the HapMap data is reliable for tSNP selection
in other populations [Ribas et al., 2006; Smith et al., 2006;
Stankovich et al., 2006; Willer et al., 2006]. Furthermore, new
techniques, such as high-density SNP chips, will enable the
identification of IBD regions much faster, not only in young
isolated populations with wider LD regions across the genome such
as the Central American populations, but also in older populations.
Nevertheless, isolated populations have been of great value in
the identification of a number of susceptibility loci/genes for BP
disorder and SZ, of which some are strongly supported today by
several meta-analyses. Interestingly, chromosome 6q, one of the
most replicated linkage regions for BP disorder to date has
emerged from multiple genetic studies performed in several
isolated populations, all showing genome-wide significant evidence
for linkage. Furthermore, chromosome 1q32–q42.1 encompassing
DISC1, originally identified through a balanced translocation, is
repeatedly identified in the Finnish population with significant
association of the gene itself. DISC1 has now emerged as a key
molecular player in SZ and in normal brain processes. Importantly,
NRG1 and DAOA are the major examples of the success of
genetic studies performed in isolated populations, since these
genes were originally identified in the isolated Icelandic and
French Canadian population respectively. During the last few
years, NRG1 and DAOA are both considered as one of the most
compelling findings in psychiatric genetics [reviewed in DeteraWadleigh and McMahon, 2006; Harrison and Law, 2006].
Especially for SZ, there is strong evidence for the involvement of
NRG1 [Harrison and Law, 2006] and to a lesser extent for DAOA.
At this moment the finding for DAOA may be the strongest
reported evidence for association with BP disorder [DeteraWadleigh and McMahon, 2006]. Altogether, the above-mentioned
loci and genes are today considered as major findings in psychiatric
genetics in general. Moreover, three of the four strongest
supported genes for BP disorder and SZ were originally identified
or greatly supported in isolated populations. These findings point
to the importance of a study sample with increased genetic
homogeneity, in order to distinguish this locus from a reduced
genetic background. Therefore, one can say that isolated
populations provided a major contribution to the most significant
findings in psychiatric genetics.
At the moment, no variant with high functional impact has
been identified for one of the identified genes for affective
disorders or SZ. However, new faster and cheaper techniques
HUMAN MUTATION 28(12), 1156^1170, 2007
(such as high-density SNP chips), combined with other strategies
(such as HapMap or the use of clinical subgroups) as well as
approaches that are proven to be successful (such as isolated
populations), further extensive genetic investigation of susceptibility genes, functional studies of putative risk alleles and
interaction analysis will increase the chance to unravel the
molecular genetics and pathogenesis of these psychiatric disorders.
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