[go: up one dir, main page]

Osborne et al., 2006 - Google Patents

New threshold and confidence estimates for terminal restriction fragment length polymorphism analysis of complex bacterial communities

Osborne et al., 2006

View PDF @Full View
Document ID
8535118037271234387
Author
Osborne C
Rees G
Bernstein Y
Janssen P
Publication year
Publication venue
Applied and Environmental Microbiology

External Links

Snippet

Terminal restriction fragment length polymorphism (T-RFLP) analysis has the potential to be useful for comparisons of complex bacterial communities, especially to detect changes in community structure in response to different variables. To do this successfully, systematic …
Continue reading at journals.asm.org (PDF) (other versions)

Classifications

    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES OR MICRO-ORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or micro-organisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or micro-organisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6876—Hybridisation probes
    • C12Q1/6888—Hybridisation probes for detection or identification of organisms
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES OR MICRO-ORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or micro-organisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or micro-organisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6813—Hybridisation assays
    • G—PHYSICS
    • G06—COMPUTING; CALCULATING; COUNTING
    • G06F—ELECTRICAL DIGITAL DATA PROCESSING
    • G06F19/00—Digital computing or data processing equipment or methods, specially adapted for specific applications
    • G06F19/10—Bioinformatics, i.e. methods or systems for genetic or protein-related data processing in computational molecular biology
    • G06F19/22—Bioinformatics, i.e. methods or systems for genetic or protein-related data processing in computational molecular biology for sequence comparison involving nucleotides or amino acids, e.g. homology search, motif or SNP [Single-Nucleotide Polymorphism] discovery or sequence alignment
    • G—PHYSICS
    • G06—COMPUTING; CALCULATING; COUNTING
    • G06F—ELECTRICAL DIGITAL DATA PROCESSING
    • G06F21/00—Security arrangements for protecting computers, components thereof, programs or data against unauthorised activity
    • G06F21/50—Monitoring users, programs or devices to maintain the integrity of platforms, e.g. of processors, firmware or operating systems
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12N—MICRO-ORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING OR MAINTAINING MICRO-ORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
    • C12N15/09—Recombinant DNA-technology

Similar Documents

Publication Publication Date Title
Osborne et al. New threshold and confidence estimates for terminal restriction fragment length polymorphism analysis of complex bacterial communities
Dueholm et al. Generation of comprehensive ecosystem-specific reference databases with species-level resolution by high-throughput full-length 16S rRNA gene sequencing and automated taxonomy assignment (AutoTax)
Sze et al. The impact of DNA polymerase and number of rounds of amplification in PCR on 16S rRNA gene sequence data
Hartmann et al. Community structure analyses are more sensitive to differences in soil bacterial communities than anonymous diversity indices
Boys et al. Microsatellite analysis reveals genetically distinct populations of red pine (Pinus resinosa, Pinaceae)
Schloss et al. Introducing TreeClimber, a test to compare microbial community structures
Orland et al. Microbiome functioning depends on individual and interactive effects of the environment and community structure
McGuire et al. Functional diversity in resource use by fungi
Philippot et al. Spatial patterns of bacterial taxa in nature reflect ecological traits of deep branches of the 16S rRNA bacterial tree
Hartmann et al. Bacterial, archaeal and eukaryal community structures throughout soil horizons of harvested and naturally disturbed forest stands
Bonin et al. Optimal sequence similarity thresholds for clustering of molecular operational taxonomic units in DNA metabarcoding studies
Reeve et al. Effects of soil type and farm management on soil ecological functional genes and microbial activities
Creer et al. The ecologist's field guide to sequence‐based identification of biodiversity
Thies Soil microbial community analysis using terminal restriction fragment length polymorphisms
Glücksman et al. Closely related protist strains have different grazing impacts on natural bacterial communities
Martiny et al. Long-term succession of structure and diversity of a biofilm formed in a model drinking water distribution system
Smith et al. Genetic and functional variation in denitrifier populations along a short-term restoration chronosequence
Blackwood et al. Terminal restriction fragment length polymorphism data analysis for quantitative comparison of microbial communities
Gaby et al. A global census of nitrogenase diversity
Singh et al. Use of multiplex terminal restriction fragment length polymorphism for rapid and simultaneous analysis of different components of the soil microbial community▿
Sharma et al. Characterization of variability in Rhizoctonia solani by using morphological and molecular markers
Lankau et al. Ectomycorrhizal fungal richness declines towards the host species’ range edge
Khan et al. Conservation tillage practices affect soil microbial diversity and composition in experimental fields
Vettraino et al. Pyrosequencing as a tool for the detection of Phytophthora species: error rate and risk of false Molecular Operational Taxonomic Units
Angermeyer et al. Decoupled distance–decay patterns between dsr A and 16 S r RNA genes among salt marsh sulfate‐reducing bacteria