Khojasteh Lakelayeh, 2005 - Google Patents
Quality filtering and normalization for microarray-based CGH dataKhojasteh Lakelayeh, 2005
View PDF- Document ID
- 4527859258018090677
- Author
- Khojasteh Lakelayeh M
- Publication year
External Links
Snippet
Altered copy numbers of DNA sequences are a characteristic of solid tumors. Microarray- based Comparative Genomic Hybridization (CGH) has emerged as a promising technology that has the potential to identify minute genomic changes, in the order of single DNA copy …
- 238000002493 microarray 0 title abstract description 186
Classifications
-
- G—PHYSICS
- G06—COMPUTING; CALCULATING; COUNTING
- G06F—ELECTRICAL DIGITAL DATA PROCESSING
- G06F19/00—Digital computing or data processing equipment or methods, specially adapted for specific applications
- G06F19/10—Bioinformatics, i.e. methods or systems for genetic or protein-related data processing in computational molecular biology
- G06F19/20—Bioinformatics, i.e. methods or systems for genetic or protein-related data processing in computational molecular biology for hybridisation or gene expression, e.g. microarrays, sequencing by hybridisation, normalisation, profiling, noise correction models, expression ratio estimation, probe design or probe optimisation
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES OR MICRO-ORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or micro-organisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or micro-organisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6813—Hybridisation assays
- C12Q1/6834—Nucleic acid analysis involving immobilisation; Immobilisation characterised by the carrier or coupling agent
- C12Q1/6837—Nucleic acid analysis involving immobilisation; Immobilisation characterised by the carrier or coupling agent characterised by the use of probe arrays or probe chips
-
- G—PHYSICS
- G01—MEASURING; TESTING
- G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
- G01N21/00—Investigating or analysing materials by the use of optical means, i.e. using infra-red, visible or ultra-violet light
- G01N21/62—Systems in which the material investigated is excited whereby it emits light or causes a change in wavelength of the incident light
- G01N21/63—Systems in which the material investigated is excited whereby it emits light or causes a change in wavelength of the incident light optically excited
- G01N21/64—Fluorescence; Phosphorescence
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES OR MICRO-ORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or micro-organisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or micro-organisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6813—Hybridisation assays
- C12Q1/6827—Hybridisation assays for mutation or polymorphism detection
-
- G—PHYSICS
- G06—COMPUTING; CALCULATING; COUNTING
- G06F—ELECTRICAL DIGITAL DATA PROCESSING
- G06F19/00—Digital computing or data processing equipment or methods, specially adapted for specific applications
- G06F19/10—Bioinformatics, i.e. methods or systems for genetic or protein-related data processing in computational molecular biology
- G06F19/24—Bioinformatics, i.e. methods or systems for genetic or protein-related data processing in computational molecular biology for machine learning, data mining or biostatistics, e.g. pattern finding, knowledge discovery, rule extraction, correlation, clustering or classification
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES OR MICRO-ORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or micro-organisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or micro-organisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6876—Hybridisation probes
Similar Documents
Publication | Publication Date | Title |
---|---|---|
US7991560B2 (en) | System, method, and computer software for the presentation and storage of analysis results | |
US11188778B1 (en) | Equalization-based image processing and spatial crosstalk attenuator | |
JP6839268B2 (en) | Somatic copy number polymorphism detection | |
JP2008533558A (en) | Normalization method for genotype analysis | |
US20060173628A1 (en) | Method and system for determining feature-coordinate grid or subgrids of microarray images | |
McShane et al. | Statistical issues in the design and analysis of gene expression microarray studies of animal models | |
Deepa et al. | Development of a Fully Automated Image Analysis Method for High Density cDNA and array CGH Microarray Based Genomic Studies | |
US20050123971A1 (en) | System, method, and computer software product for generating genotype calls | |
US11989265B2 (en) | Intensity extraction from oligonucleotide clusters for base calling | |
Khojasteh Lakelayeh | Quality filtering and normalization for microarray-based CGH data | |
US20030156136A1 (en) | Method and system for visualization of results of feature extraction from molecular array data | |
US20040138821A1 (en) | System, method, and computer software product for analysis and display of genotyping, annotation, and related information | |
US20240362300A1 (en) | Intensity extraction and spatial crosstalk attenuation for base calling | |
US20230407386A1 (en) | Dependence of base calling on flow cell tilt | |
US20230298339A1 (en) | State-based base calling | |
US20230087698A1 (en) | Compressed state-based base calling | |
ANTONIOS | Optimization of cDNA microarray image analysis methods | |
US20060004527A1 (en) | Methods, systems and computer readable media for identifying dye-normalization probes | |
WO2023049215A1 (en) | Compressed state-based base calling | |
WO2004111647A1 (en) | Analysis of a microarray data set | |
Maziarz | Spotting error in cDNA microarray data | |
Flight | A Workflow for the Analysis of DNA Microarray Time-course Data | |
Bajcsy | DNA Microarray Image Analysis |