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Noorian et al., 2009 - Google Patents

Performance enhancement of smith-waterman algorithm using hybrid model: Comparing the mpi and hybrid programming paradigm on smp clusters

Noorian et al., 2009

Document ID
3038556065851040645
Author
Noorian M
Pooshfam H
Noorian Z
Abdullah R
Publication year
Publication venue
2009 IEEE International Conference on Systems, Man and Cybernetics

External Links

Snippet

Nowadays, database pattern searching is the most heavily used operation in computational biology. Indeed, sequence alignment algorithm plays an important role to find the homologous groups of sequences which may help to determine the function of new …
Continue reading at ieeexplore.ieee.org (other versions)

Classifications

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    • G06F9/06—Arrangements for programme control, e.g. control unit using stored programme, i.e. using internal store of processing equipment to receive and retain programme
    • G06F9/46—Multiprogramming arrangements
    • G06F9/50—Allocation of resources, e.g. of the central processing unit [CPU]
    • G06F9/5005—Allocation of resources, e.g. of the central processing unit [CPU] to service a request
    • G06F9/5027—Allocation of resources, e.g. of the central processing unit [CPU] to service a request the resource being a machine, e.g. CPUs, Servers, Terminals
    • G06F9/505—Allocation of resources, e.g. of the central processing unit [CPU] to service a request the resource being a machine, e.g. CPUs, Servers, Terminals considering the load
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    • G06F9/50—Allocation of resources, e.g. of the central processing unit [CPU]
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    • G06F9/5066—Algorithms for mapping a plurality of inter-dependent sub-tasks onto a plurality of physical CPUs
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    • G06F9/48—Programme initiating; Programme switching, e.g. by interrupt
    • G06F9/4806—Task transfer initiation or dispatching
    • G06F9/4843—Task transfer initiation or dispatching by program, e.g. task dispatcher, supervisor, operating system
    • G06F9/4881—Scheduling strategies for dispatcher, e.g. round robin, multi-level priority queues
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    • G—PHYSICS
    • G06—COMPUTING; CALCULATING; COUNTING
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    • G06F17/00—Digital computing or data processing equipment or methods, specially adapted for specific functions
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    • G06F17/30286—Information retrieval; Database structures therefor; File system structures therefor in structured data stores
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    • G06F17/30424—Query processing
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    • G06F19/22—Bioinformatics, i.e. methods or systems for genetic or protein-related data processing in computational molecular biology for sequence comparison involving nucleotides or amino acids, e.g. homology search, motif or SNP [Single-Nucleotide Polymorphism] discovery or sequence alignment
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    • G06F2209/00—Indexing scheme relating to G06F9/00

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