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Sarkar et al., 2023 - Google Patents

Metagenomic Protocol (From Quality Control to Mapping) for Metagenome-assembled Genomes Using Anvi'o

Sarkar et al., 2023

Document ID
17074364443373173800
Author
Sarkar S
Richie T
Lee S
Publication year

External Links

Snippet

Anvi'o (advanced analysis and visualization platform for 'omics data), an open-source software, provides a visualization platform for advanced analysis of 'omics data. Anvi'o is able to analyze a range of multi-'omics data including metagenomics, genomics …
Continue reading at bio-protocol.org (other versions)

Classifications

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    • G06F19/10—Bioinformatics, i.e. methods or systems for genetic or protein-related data processing in computational molecular biology
    • G06F19/22—Bioinformatics, i.e. methods or systems for genetic or protein-related data processing in computational molecular biology for sequence comparison involving nucleotides or amino acids, e.g. homology search, motif or SNP [Single-Nucleotide Polymorphism] discovery or sequence alignment
    • G—PHYSICS
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    • G06F19/12—Bioinformatics, i.e. methods or systems for genetic or protein-related data processing in computational molecular biology for modelling or simulation in systems biology, e.g. probabilistic or dynamic models, gene-regulatory networks, protein interaction networks or metabolic networks
    • G—PHYSICS
    • G06—COMPUTING; CALCULATING; COUNTING
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    • G06F17/30286—Information retrieval; Database structures therefor; File system structures therefor in structured data stores
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    • G06F19/10—Bioinformatics, i.e. methods or systems for genetic or protein-related data processing in computational molecular biology
    • G06F19/18—Bioinformatics, i.e. methods or systems for genetic or protein-related data processing in computational molecular biology for functional genomics or proteomics, e.g. genotype-phenotype associations, linkage disequilibrium, population genetics, binding site identification, mutagenesis, genotyping or genome annotation, protein-protein interactions or protein-nucleic acid interactions
    • G—PHYSICS
    • G06—COMPUTING; CALCULATING; COUNTING
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    • G06F8/40—Transformations of program code
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    • G—PHYSICS
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    • G06F19/00—Digital computing or data processing equipment or methods, specially adapted for specific applications
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    • G06F19/16—Bioinformatics, i.e. methods or systems for genetic or protein-related data processing in computational molecular biology for molecular structure, e.g. structure alignment, structural or functional relations, protein folding, domain topologies, drug targeting using structure data, involving two-dimensional or three-dimensional structures
    • G—PHYSICS
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    • G06F9/00—Arrangements for programme control, e.g. control unit
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    • G06F9/44—Arrangements for executing specific programmes
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