[go: up one dir, main page]

Pettengill et al., 2016 - Google Patents

Phylogenetic analyses of Shigella and enteroinvasive Escherichia coli for the identification of molecular epidemiological markers: whole-genome comparative …

Pettengill et al., 2016

View HTML
Document ID
15414708297876667766
Author
Pettengill E
Pettengill J
Binet R
Publication year
Publication venue
Frontiers in microbiology

External Links

Snippet

As a leading cause of bacterial dysentery, Shigella represents a significant threat to public health and food safety. Related, but often overlooked, enteroinvasive Escherichia coli (EIEC) can also cause dysentery. Current typing methods have limited ability to identify and …
Continue reading at www.frontiersin.org (HTML) (other versions)

Classifications

    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES OR MICRO-ORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or micro-organisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or micro-organisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6876—Hybridisation probes
    • C12Q1/6888—Hybridisation probes for detection or identification of organisms
    • C12Q1/689—Hybridisation probes for detection or identification of organisms for bacteria
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES OR MICRO-ORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or micro-organisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/02—Measuring or testing processes involving enzymes, nucleic acids or micro-organisms; Compositions therefor; Processes of preparing such compositions involving viable micro-organisms
    • C12Q1/04—Determining presence or kind of micro-organism; Use of selective media for testing antibiotics or bacteriocides; Compositions containing a chemical indicator therefor
    • G—PHYSICS
    • G06—COMPUTING; CALCULATING; COUNTING
    • G06F—ELECTRICAL DIGITAL DATA PROCESSING
    • G06F19/00—Digital computing or data processing equipment or methods, specially adapted for specific applications
    • G06F19/10—Bioinformatics, i.e. methods or systems for genetic or protein-related data processing in computational molecular biology
    • G06F19/22—Bioinformatics, i.e. methods or systems for genetic or protein-related data processing in computational molecular biology for sequence comparison involving nucleotides or amino acids, e.g. homology search, motif or SNP [Single-Nucleotide Polymorphism] discovery or sequence alignment
    • G—PHYSICS
    • G06—COMPUTING; CALCULATING; COUNTING
    • G06F—ELECTRICAL DIGITAL DATA PROCESSING
    • G06F19/00—Digital computing or data processing equipment or methods, specially adapted for specific applications
    • G06F19/10—Bioinformatics, i.e. methods or systems for genetic or protein-related data processing in computational molecular biology
    • G06F19/18—Bioinformatics, i.e. methods or systems for genetic or protein-related data processing in computational molecular biology for functional genomics or proteomics, e.g. genotype-phenotype associations, linkage disequilibrium, population genetics, binding site identification, mutagenesis, genotyping or genome annotation, protein-protein interactions or protein-nucleic acid interactions
    • G—PHYSICS
    • G06—COMPUTING; CALCULATING; COUNTING
    • G06F—ELECTRICAL DIGITAL DATA PROCESSING
    • G06F19/00—Digital computing or data processing equipment or methods, specially adapted for specific applications
    • G06F19/10—Bioinformatics, i.e. methods or systems for genetic or protein-related data processing in computational molecular biology
    • G06F19/28—Bioinformatics, i.e. methods or systems for genetic or protein-related data processing in computational molecular biology for programming tools or database systems, e.g. ontologies, heterogeneous data integration, data warehousing or computing architectures
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES OR MICRO-ORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2600/00—Oligonucleotides characterized by their use

Similar Documents

Publication Publication Date Title
Pettengill et al. Phylogenetic analyses of Shigella and enteroinvasive Escherichia coli for the identification of molecular epidemiological markers: whole-genome comparative analysis does not support distinct genera designation
Mahamat Abdelrahim et al. Large-scale genomic analyses and toxinotyping of Clostridium perfringens implicated in foodborne outbreaks in France
Achtman et al. EnteroBase: hierarchical clustering of 100 000s of bacterial genomes into species/subspecies and populations
Milani et al. Exploring vertical transmission of bifidobacteria from mother to child
Diancourt et al. Multilocus sequence typing of Lactobacillus casei reveals a clonal population structure with low levels of homologous recombination
Timofeev et al. Russian isolates enlarge the known geographic diversity of Francisella tularensis subsp. mediasiatica
Vilne et al. Machine learning approaches for epidemiological investigations of food-borne disease outbreaks
Hauer et al. Accurate phylogenetic relationships among Mycobacterium bovis strains circulating in France based on whole genome sequencing and single nucleotide polymorphism analysis
Basmaci et al. Multilocus sequence typing and rtx A toxin gene sequencing analysis of Kingella kingae isolates demonstrates genetic diversity and international clones
Larsson et al. Canonical insertion-deletion markers for rapid DNA typing of Francisella tularensis
Wang et al. Prevalence and genetic diversity of Listeria monocytogenes isolated from retail pork in Wuhan, China
Andras et al. A novel approach to parasite population genetics: Experimental infection reveals geographic differentiation, recombination and host‐mediated population structure in P asteuria ramosa, a bacterial parasite of D aphnia
Carroll et al. Genomic characterization of endemic and ecdemic non-typhoidal Salmonella enterica lineages circulating among animals and animal products in South Africa
Torres-Morales et al. Site-specialization of human oral Gemella species
Zhang et al. Improved genomic identification, clustering, and serotyping of Shiga toxin-producing Escherichia coli using cluster/serotype-specific gene markers
Zhao et al. Adaptive evolution within the gut microbiome of individual people
Wagner et al. Surveillance of Listeria monocytogenes: early detection, population dynamics, and quasimetagenomic sequencing during selective enrichment
Kocurek et al. Application of quasimetagenomics methods to define microbial diversity and subtype Listeria monocytogenes in dairy and seafood production facilities
Maguire et al. Precision metagenomics sequencing for food safety: Hybrid assembly of Shiga toxin-producing Escherichia coli in enriched agricultural water
Ghielmetti et al. Advancing animal tuberculosis surveillance using culture-independent long-read whole-genome sequencing
Kravik et al. A molecular epidemiological study on Escherichia coli in young chicks with colibacillosis identified two possible outbreaks across farms
Vorimore et al. Combination of whole genome sequencing and supervised machine learning provides unambiguous identification of eae-positive Shiga toxin-producing Escherichia coli
Kislichkina et al. Evaluation of 16S rRNA genes sequences and genome-based analysis for identification of non-pathogenic Yersinia
Gulla et al. Genotyping of salmon gill poxvirus reveals one main predominant lineage in Europe, featuring fjord-and fish farm-specific sub-lineages
Fagerlund et al. Early detection and population dynamics of Listeria monocytogenes in naturally contaminated drains from a meat processing plant