WO2025191137A1 - Conjugates of trop2-specific antigen binding proteins and cytokines - Google Patents
Conjugates of trop2-specific antigen binding proteins and cytokinesInfo
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- WO2025191137A1 WO2025191137A1 PCT/EP2025/057036 EP2025057036W WO2025191137A1 WO 2025191137 A1 WO2025191137 A1 WO 2025191137A1 EP 2025057036 W EP2025057036 W EP 2025057036W WO 2025191137 A1 WO2025191137 A1 WO 2025191137A1
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- mutein
- bbl
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- sequence
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- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K14/00—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof
- C07K14/435—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans
- C07K14/52—Cytokines; Lymphokines; Interferons
- C07K14/525—Tumour necrosis factor [TNF]
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- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K14/00—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof
- C07K14/435—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans
- C07K14/52—Cytokines; Lymphokines; Interferons
- C07K14/54—Interleukins [IL]
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- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K16/00—Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies
- C07K16/18—Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies against material from animals or humans
- C07K16/32—Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies against material from animals or humans against translation products of oncogenes
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- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
- A61K39/00—Medicinal preparations containing antigens or antibodies
- A61K2039/505—Medicinal preparations containing antigens or antibodies comprising antibodies
-
- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
- A61K38/00—Medicinal preparations containing peptides
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- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K2317/00—Immunoglobulins specific features
- C07K2317/20—Immunoglobulins specific features characterized by taxonomic origin
- C07K2317/24—Immunoglobulins specific features characterized by taxonomic origin containing regions, domains or residues from different species, e.g. chimeric, humanized or veneered
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- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K2319/00—Fusion polypeptide
- C07K2319/30—Non-immunoglobulin-derived peptide or protein having an immunoglobulin constant or Fc region, or a fragment thereof, attached thereto
Definitions
- the present invention relates to the field of medicine, in particular to the fields of oncology, immunology and immunotherapy of tumors.
- the invention relates to anti-TROP2 antibodies to which are conjugated a mutein of the 4-1 BB ligand (4-1 BBL) extracellular domain (ECD), and a mutein of IL-21 .
- the conjugates are used in medical treatments of e.g. cancer.
- checkpoint inhibitors as well as engagers induce a high occurrence rate of severe toxicities, additionally, predictions on why some but not all patients respond to specific antibodies cannot yet be made.
- Cellular therapies are also facing struggles on multiple levels, poor manufacturability due to the source of cells coming from very ill patients, lengthy and very costly manufacturing per se and the lack of predictive strategies to know which patients will benefit from the expensive therapy.
- cellular immunotherapy is yet limited to a short list of malignant indications.
- amino acid similarity the skilled person may also take into account so-called “conservative” amino acid substitutions, as will be clear to the skilled person.
- Conservative amino acid substitutions refer to the interchangeability of residues having similar side chains. Examples of classes of amino acid residues for conservative substitutions are given in the Tables below.
- agent refers generally to any entity which is normally not present or not present at the levels being administered to a cell, tissue or subject.
- An agent can be a compound or a composition.
- An agent can e.g. be selected from the group consisting of: polynucleotides, polypeptides, small molecules, (multispecific) antigen binding proteins, such as antibodies and functional fragments thereof.
- antigen-binding domain or “antigen-binding region” refers to the portion of an antigen-binding protein that is capable of specifically binding to an antigen or epitope.
- the antigen-binding region is an immunoglobulin-derived antigen-binding region, e.g.
- the antigen-binding region is an immunoglobulin-derived antigen-binding region from a single domain antibody consisting only of heavy chains and devoid of light chains as are known e.g. from camelids, wherein the antigen-binding site is present on, and formed by, the single variable domain (also referred to as an "immunoglobulin single variable domain" or "ISVD").
- ISVD immunoglobulin single variable domain
- an antigen-binding region comprises a non-immunoglobulin-derived domain capable of specifically binding to an antigen or epitope, such as DARPpins; Affilins; anticalins, etc.
- antibody herein is used in the broadest sense and specifically includes full-length monoclonal antibodies, polyclonal antibodies, multispecific antibodies (e.g. bispecific antibodies), and antibody fragments and derivatives, so long as they exhibit the desired biological and/or immunological activity.
- Various techniques relevant to the production of antibodies are provided in, e.g., Harlow, et al.. Antibodies: A Laboratory Manual, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y., (1988).
- An antibody can be human and/or humanized.
- “Humanized” forms of non-human (e.g., rodent) antibodies are chimeric antibodies that contain minimal sequence derived from the non-human antibody.
- full length antibody “intact antibody”, and “whole antibody” are used herein interchangeably to refer to an antibody having a structure substantially similar to a native antibody structure.
- Native antibodies refer to naturally occurring immunoglobulin molecules with varying structures.
- native IgG-class antibodies are heterotetrameric glycoproteins of about 150,000 daltons, composed of two light chains and two heavy chains that are disulfide-bonded. From N- to C-terminus, each heavy chain has a variable region (VH), also called a variable heavy domain or a heavy chain variable domain, followed by three constant domains (CH1 , CH2, and CH3), also called a heavy chain constant region.
- VH variable region
- CH2 and CH3 constant domains
- each light chain has a variable region (VL), also called a variable light domain or a light chain variable domain, followed by a light chain constant domain (CL), also called a light chain constant region.
- the heavy chain of an antibody may be assigned to one of five types, called a (IgA), 6 (IgD), s (IgE), y (IgG), or m (IgM), some of which may be further divided into subtypes, e.g. y1 (lgG1), y2 (lgG2), y3 (lgG3), y4 (lgG4), a1 (lgA1) and a2 (lgA2).
- the light chain of an antibody may be assigned to one of two types, called kappa (K) and lambda (A), based on the amino acid sequence of its constant domain.
- antibody fragment comprises a portion of a full-length antibody, e.g. the antigen-binding or variable regions thereof.
- antibody fragments include Fab, Fab', F(ab)2, F(ab’)2, F(ab)s, Fv (typically the VH and VL domains of a single arm of an antibody), single-chain Fv (scFv), dsFv, Fd fragments (typically the VH and CH1 domain), and dAb (typically a VH domain) fragments; VH, VL, VHH, and V-NAR domains; minibodies, diabodies, triabodies, tetrabodies, and kappa bodies (see, e.g...
- Diabodies are antibody fragments with two antigen-binding sites that may be bivalent or bispecific, see, for example, EP 404,097; WO 1993/01161 ; Hudson et al., Nat Med 9, 129-134 (2003); and Hollinger et al., Proc Natl Acad Sci USA 90, 6444-6448 (1993).
- Triabodies and tetrabodies are also described in Hudson et al., Nat Med 9, 129-134 (2003).
- Various types of antibody fragments have been described or reviewed in, e.g... Heiliger and Hudson, Nat Biotechnol 2005; 23, 1126-1136; W02005/040219, US20050238646 and US20020161201 .
- Antibody fragments can be made by various techniques, including but not limited to proteolytic digestion of an intact antibody as well as production by recombinant host cells (e.g. CHO, E. coli or phage), as described herein.
- monoclonal antibody as used herein is not limited to antibodies produced through hybridoma technology.
- the term “monoclonal antibody” refers to an antibody that is derived from a single clone, including any eukaryotic, prokaryotic, or phage clone, and not the method by which it is produced.
- Monoclonal antibodies can be prepared using a wide variety of techniques known in the art including the use of hybridoma, recombinant, and phage display technologies, or a combination thereof.
- monoclonal antibodies can be produced using hybridoma techniques including those known in the art and taught, for example, in Harlow and Lane, "Antibodies: A Laboratory Manual,” Cold Spring Harbor Laboratory Press, N.Y.
- the term "monospecific" antibody as used herein denotes that the antibody-part of a conjugate comprising antigen binding-regions as described herein, has one or more antigen-binding sites each of which bind to the same epitope of the same antigen.
- the term "bispecific” means that the antibody-part of a conjugate as described herein, has at least two antigen-binding sites that are able to specifically bind to at least two distinct antigenic determinants.
- a bispecific antigen binding molecule comprises two antigen-binding sites, each of which is specific for a different antigenic determinant.
- the bispecific antigen binding molecule is capable of simultaneously binding two antigenic determinants, particularly two antigenic determinants expressed on two distinct cells.
- valent or "valency” as used within the current application denotes the presence of a specified number of binding sites or number of ligands in an antigen binding molecule or conjugate described herein.
- bivalent tetravalent
- hexavalent denote the presence of two, four, and six binding sites or ligands, respectively, in an antigen binding molecule or conjugate.
- An antibody immunologically reactive with a particular antigen can be generated by recombinant methods such as selection of libraries of recombinant antibodies in phage or similar vectors, see, e.g., Huse et al., Science 246:1275-1281 (1989); Ward et al., Nature 341 :544-546 (1989); and Vaughan et al., Nature Biotech. 14:309-314 (1996), or by immunizing an animal with the antigen or with DNA encoding the antigen. Methods for producing and screening for specific antibodies using hybridoma technology are routine and well known in the art. In a non-limiting example, mice can be immunized with an antigen of interest or a cell expressing such an antigen.
- the mouse spleen is harvested and splenocytes isolated.
- the splenocytes are then fused by well-known techniques to any suitable myeloma cells.
- Hybridomas are selected and cloned by limiting dilution.
- the hybridoma clones are then assayed by methods known in the art for cells that secrete antibodies capable of binding the antigen.
- Ascites fluid which generally contains high levels of antibodies, can be generated by inoculating mice intraperitoneally with positive hybridoma clones.
- an immunoglobulin typically has a heavy and light chain.
- Each heavy and light chain contains a constant region and a variable region, (the regions are also known as “domains").
- Light and heavy chain variable regions contain four "framework” regions interrupted by three hypervariable regions, also called “complementarity-determining regions” or "CDRs".
- CDRs complementarity-determining regions
- the sequences of the framework regions of different light or heavy chains are relatively conserved within a species.
- the framework region of an antibody which is the combined framework regions of the constituent light and heavy chains, serves to position and align the CDRs in three-dimensional space.
- hypervariable region when used herein refers to the amino acid residues of an antibody that are responsible for antigen binding.
- the hypervariable region generally comprises amino acid residues from a "complementarity-determining region” or "CDR" (e.g. residues 24-34 (L1), 50-56 (L2) and 89-97 (L3) in the light-chain variable domain and 31-35 (H1), 50-65 (H2) and 95-102 (H3) in the heavy-chain variable domain; Kabat et al. 1991 , Sequences of Proteins of Immunological Interest, 5th Ed. Public Health Service, National Institutes of Health, Bethesda, MD, USA) and/or those residues from a "hypervariable loop" (e.g.
- the numbering of amino acid residues in this region is performed by the method described in Kabat et al., supra. Phrases such as “Kabat position”, "variable domain residue numbering as in Kabat” and “according to Kabat” herein refer to this numbering system for heavy chain variable domains or light chain variable domains.
- a heavy chain variable domain may include a single amino acid insert (residue 52a according to Kabat) after residue 52 of CDR H2 and inserted residues (e.g. residues 82a, 82b, and 82c, etc. according to Kabat) after heavy chain FR residue 82.
- the Kabat numbering of residues may be determined for a given antibody by alignment at regions of homology of the sequence of the antibody with a "standard" Kabat numbered sequence.
- frame or "FR" residues as used herein refers to the region of an antibody variable domain exclusive of those regions defined as CDRs.
- Each antibody variable domain framework can be further subdivided into the contiguous regions separated by the CDRs (FR1 , FR2, FR3 and FR4).
- constant region refers to an antibody-derived constant region that is encoded by one of the light or heavy chain immunoglobulin constant region genes.
- constant light chain or “light chain constant region” as used herein is meant the region of an antibody encoded by the kappa (Ck) or lambda (CA) light chains.
- the constant light chain typically comprises a single domain, and as defined herein refers to positions 108-214 of CK or CA, wherein numbering is according to the EU index (Kabat et al., 1991 , supra).
- constant heavy chain or “heavy chain constant region” as used herein refers to the region of an antibody encoded by the mu, delta, gamma, alpha, or epsilon genes to define the antibody's isotype as IgM, IgD, IgG, IgA, or IgE, respectively.
- the constant heavy chain as defined herein, refers to the N-terminus of the CH1 domain to the C- terminus of the CH3 domain, thus comprising positions 118-447, wherein numbering is according to the EU index.
- Papain digestion of intact antibodies produces two identical antigen-binding fragments, called “Fab” fragments containing each the heavy- and light-chain variable domains and also the constant domain of the light chain and the first constant domain (CH1) of the heavy chain.
- Fab fragments can also be recombinantly produced by methods known in the art.
- the term “Fab fragment” " or “Fab region” refers to an antibody fragment comprising a light chain fragment comprising a VL domain and a constant domain of a light chain (CL), and a VH domain and a first constant domain (CH1) of a heavy chain.
- Fab may refer to this region in isolation, or this region in the context of a polypeptide, conjugate or antigen-binding region, or any other embodiments as outlined herein.
- Fab’ fragments differ from Fab fragments by the addition of a few residues at the carboxy terminus of the heavy chain CH1 domain including one or more cysteines from the antibody hinge region.
- Fab’-SH are Fab’ fragments in which the cysteine residue(s) of the constant domains bear a free thiol group. Pepsin treatment yields an F(ab’)2 fragment that has two antigen-combining sites (two Fab fragments) and a part of the Fc region.
- single-chain Fv or "scFv” as used herein refers to antibody fragments comprising the VH and VL domains of an antibody, wherein these domains are present in a single polypeptide chain.
- the Fv polypeptide further comprises a polypeptide linker between the VH and VL domains which enables the scFv to form the desired structure for antigen binding.
- Methods for producing scFvs are well known in the art. For a review of methods for producing scFvs see Pluckthun in The Pharmacology of Monoclonal Antibodies, vol. 113, Rosenburg and Moore eds. Springer-Verlag, N.Y., pp. 269-315 (1994).
- Scaffold antigen-binding proteins are known in the art, for example, fibronectin and designed ankyrin repeat proteins (DARPins) have been used as alternative scaffolds for antigenbinding domains, see, e.g., Gebauer and Skerra, Engineered protein scaffolds as next-generation antibody therapeutics. Curr Opin Chem Biol 13:245-255 (2009) and Stumpp et al., Darpins: A new generation of protein therapeutics. Drug Discovery Today 13: 695-701 (2008).
- DARPins ankyrin repeat proteins
- a scaffold antigen-binding protein is selected from the group consisting of CTLA-4 (Evibody), Lipocalins (Anticalin), monobodies, centyrins, kunitz domains, knottins, fynomers, lipocalins, a Protein A-derived molecule such as Z-domain of Protein A (Affibody), an A-domain (Avimer/Maxibody), a serum transferrin (frans-body); a designed ankyrin repeat protein (DARPin), a variable domain of antibody light chain or heavy chain (single-domain antibody, sdAb), a variable domain of antibody heavy chain (nanobody, aVH), VNAR fragments, a fibronectin (AdNectin), a C- type lectin domain (Tetranectin); a variable domain of a new antigen receptor beta-lactamase (VNAR fragments), a human gamma-crystallin or
- CTLA-4 Cytotoxic T Lymphocyte-associated Antigen 4
- CTLA-4 is a CD28-family receptor expressed on mainly CD4 + T-cells. Its extracellular domain has a variable domain- like Ig fold. Loops corresponding to CDRs of antibodies can be substituted with heterologous sequence to confer different binding properties.
- CTLA-4 molecules engineered to have different binding specificities are also known as Evibodies (e.g. US7166697B1). Evibodies are around the same size as the isolated variable region of an antibody (e.g. a domain antibody). For further details see Journal of Immunological Methods 248 (1-2), 31-45 (2001).
- Lipocalins are a family of extracellular proteins which transport small hydrophobic molecules such as steroids, bilins, retinoids and lipids. They have a rigid beta-sheet secondary structure with a number of loops at the open end of the conical structure which can be engineered to bind to different target antigens. Anticalins are between 160-180 amino acids in size and are derived from lipocalins. For further details see Biochim Biophys Acta 1482: 337-350 (2000), US7250297B1 and US20070224633.
- An affibody is a scaffold derived from Protein A of Staphylococcus aureus which can be engineered to bind to antigen.
- the domain consists of a three-helical bundle of approximately 58 amino acids. Libraries have been generated by randomization of surface residues. For further details see Protein Eng. Des. Sei. 17, 455-462 (2004) and EP1641818A1 .
- Avimers are multidomain proteins derived from the A-domain scaffold family.
- the native domains of approximately 35 amino acids adopt a defined disulfide bonded structure. Diversity is generated by shuffling of the natural variation exhibited by the family of A-domains. For further details see Nature Biotechnology 23(12), 1556 - 1561 (2005) and Expert Opinion on Investigational Drugs 16(6), 909-917 (June 2007).
- a transferrin is a monomeric serum transport glycoprotein. Transferrins can be engineered to bind different target antigens by insertion of peptide sequences in a permissive surface loop. Examples of engineered transferrin scaffolds include the Trans-body. For further details see J. Biol. Chem 274, 24066-24073 (1999).
- DARPins Designed Ankyrin Repeat Proteins
- Ankyrin which is a family of proteins that mediate attachment of integral membrane proteins to the cytoskeleton.
- a single ankyrin repeat is a 33-residue motif consisting of two alpha-helices and a beta-turn. They can be engineered to bind different target antigens by randomizing residues in the first alpha-helix and a beta-turn of each repeat. Their binding interface can be increased by increasing the number of modules (a method of affinity maturation).
- affinity maturation For further details see J. Mol. Biol. 332, 489-503 (2003), PNAS 100(4), 1700-1705 (2003) and J. Mol. Biol. 369, 1015-1028 (2007) and US20040132028A1 .
- a single-domain antibody is an antibody fragment consisting of a single monomeric variable antibody domain.
- the first single variable domains were derived from the variable domain of the antibody heavy chain from camelids (nanobodies or VHH fragments).
- the term single variable domain antibody includes an autonomous human heavy chain variable domain (aVH) or VNAR fragments derived from sharks.
- Fibronectin is a scaffold which can be engineered to bind to antigen.
- Adnectins consists of a backbone of the natural amino acid sequence of the 10th domain of the 15 repeating units of human fibronectin type III (FN3). Three loops at one end of the p-sandwich can be engineered to enable an Adnectin to specifically recognize a therapeutic target of interest. For further details see Protein Eng. Des. Sei. 18, 435- 444 (2005), US20080139791 , W02005056764 and US6818418B1.
- Peptide aptamers are combinatorial recognition molecules that consist of a constant scaffold protein, typically thioredoxin (TrxA) which contains a constrained variable peptide loop inserted at the active site.
- TrxA thioredoxin
- Microbodies are derived from naturally occurring microproteins of 25-50 amino acids in length which contain 3-4 cysteine bridges - examples of microproteins include KalataBI and conotoxin and knottins.
- the microproteins have a loop which can be engineered to include up to 25 amino acids without affecting the overall fold of the microprotein. For further details of engineered knottin domains, see W02008098796.
- Fv or “Fv fragment” or “Fv region” as used herein refers to a polypeptide that comprises the VH and VL domains of a single antibody.
- Fc or “Fc region”, as used herein refers to the polypeptide comprising the constant region of an antibody excluding the first constant region immunoglobulin domain. Fc may refer to this region in isolation, or this region in the context of an Fc polypeptide, as described below.
- Fc polypeptide or “Fc-derived polypeptide” as used herein is meant a polypeptide that comprises all or part of an Fc region.
- Fc polypeptides herein include but are not limited to antibodies, Fc fusions and Fc fragments.
- Fc regions according to the invention include variants containing at least one modification that alters (enhances or diminishes) an Fc associated effector function.
- Fc regions according to the invention include chimeric Fc regions comprising different portions or domains of different Fc regions, e.g., derived from antibodies of different isotype or species.
- Fc thus refers to the last two constant region immunoglobulin domains of IgA, IgD, and IgG, and the last three constant region immunoglobulin domains of IgE and IgM, and the flexible hinge N-terminal to these domains.
- Fc may include the J chain.
- Fc comprises immunoglobulin domains Cy2 (CH2) and Cy 3 (CH3) and the hinge between Cy 1 and Cy 2.
- the human IgG heavy chain Fc region is usually defined to comprise residues C226, P230 or A231 to its carboxyl-terminus, wherein the numbering is according to the EU index.
- the "CH2 domain" of a human IgG Fc region usually extends from an amino acid residue at about position 231 to an amino acid residue at about position 340. In one embodiment, a carbohydrate chain is attached to the CH2 domain.
- the CH2 domain herein may be a native sequence CH2 domain or variant CH2 domain.
- the "CH3 domain” comprises the stretch of residues C-terminal to a CH2 domain in an Fc region (i.e.
- the CH3 region herein may be a native sequence CH3 domain or a variant CH3 domain (e.g. a CH3 domain with an introduced "protuberance” ("knob”) in one chain thereof and a corresponding introduced “cavity” ("hole”) in the other chain thereof; see US Patent No. 5,821 ,333, expressly incorporated herein by reference).
- a human IgG heavy chain Fc region extends from Cys226, or from Pro230, to the carboxyl-terminus of the heavy chain.
- the C-terminal lysine (Lys447) of the Fc region may or may not be present.
- numbering of amino acid residues in the Fc region or constant region is according to the EU numbering system, also called the EU index, as described in Kabat et al., Sequences of Proteins of Immunological Interest, 5th Ed. Public Health Service, National Institutes of Health, Bethesda, MD, 1991 .
- the "knob-into-hole” technology is described e.g. in US 5,731 ,168; US 7,695,936; Ridgway et al., Prot Eng 9, 617-621 (1996) and Carter, J Immunol Meth 248, 7-15 (2001).
- the method involves introducing a protuberance ("knob") at the interface of a first polypeptide and a corresponding cavity ("hole") in the interface of a second polypeptide, such that the protuberance can be positioned in the cavity so as to promote heterodimer formation and hinder homodimer formation.
- Protuberances are constructed by replacing small amino acid side chains from the interface of the first polypeptide with larger side chains (e.g. tyrosine or tryptophan).
- Compensatory cavities of identical or similar size to the protuberances are created in the interface of the second polypeptide by replacing large amino acid side chains with smaller ones (e.g. alanine or threonine).
- the protuberance and cavity can be made by altering the nucleic acid encoding the polypeptides, e.g. by site-specific mutagenesis, or by peptide synthesis.
- a knob modification comprises the amino acid substitution T366W in one of the two subunits of the Fc region
- the hole modification comprises the amino acid substitutions T366S, L368A and Y407V in the other one of the two subunits of the Fc domain.
- the subunit of the Fc region comprising the knob modification additionally comprises the amino acid substitution S354C
- the subunit of the Fc region comprising the hole modification additionally comprises the amino acid substitution Y349C.
- a "region equivalent to the Fc region of an immunoglobulin" is intended to include naturally occurring allelic variants of the Fc region of an immunoglobulin as well as variants having alterations which produce substitutions, additions, or deletions but which do not decrease substantially the ability of the immunoglobulin to mediate effector functions (such as antibody-dependent cellular cytotoxicity).
- one or more amino acids can be deleted from the N-terminus or C- terminus of the Fc region of an immunoglobulin without substantial loss of biological function.
- Such variants can be selected according to general rules known in the art so as to have minimal effect on activity (see, e.g., Bowie, J. U. et al., Science 247:1306-10 (1990)).
- effector functions refers to those biological activities attributable to the Fc region of an antibody, which vary with the antibody isotype.
- antibody effector functions include: C1q binding and complement dependent cytotoxicity (CDC), Fc receptor binding, antibodydependent cell-mediated cytotoxicity (ADCC), antibody-dependent cellular phagocytosis (ADCP), cytokine secretion, immune complex-mediated antigen uptake by antigen presenting cells, down regulation of cell surface receptors (e.g. B cell receptor), and B cell activation.
- Kabat et al. also defined a numbering system for variable region sequences that is applicable to any antibody.
- One of ordinary skill in the art can unambiguously assign this system of "Kabat numbering" to any variable region sequence, without reliance on any experimental data beyond the sequence itself.
- Kabat numbering refers to the numbering system set forth by Kabat et al., U.S. Dept, of Health and Human Services, "Sequence of Proteins of Immunological Interest" (1983). Unless otherwise specified, references to the numbering of specific amino acid residue positions in an antibody variable region are according to the Kabat numbering system.
- CDRs generally comprise the amino acid residues that form the hypervariable loops.
- CDRs also comprise "specificity determining residues,” or "SDRs,” which are residues that contact antigen. SDRs are contained within regions of the CDRs called abbreviated-CDRs, or a-CDRs.
- Exemplary a-CDRs (a-CDR-L1 , a-CDRL2, a-CDR-L3, a-CDR-H1 , a-CDR-H2, and a-CDR-H3) occur at amino acid residues 31-34 of L1 , 50-55 of L2, 89-96 of L3, 31- 35B of H1 , 50-58 of H2, and 95-102 of H3.
- HVR residues and other residues in the variable domain (e.g., FR residues) are numbered herein according to Kabat et al., supra.
- Avidity is herein understood to refer to the strength of binding of a target molecule with multiple binding sites by a larger complex of binding agents, i.e. the strength of binding of multivalent binding. Avidity is related to both the affinity between an antigenic determinant and its antigen-binding site on the antigen-binding protein and the valency, i.e. the number of binding sites present on the antigen-binding protein. Affinity, on the other hand refers to simple monovalent receptor ligand systems.
- an antigen-binding region that “specifically binds” an antigen is an antigen-binding domain that binds the antigen with a KD value of no more than 10 -4 M, as may be determined as herein described below.
- an antigen-binding region of a conjugate of the invention will specifically bind to the target molecule with an affinity less than 800, 400, 200, 100 50, 10 or 5 nM, more preferably less than 1 nM, such as less than 500, 200, 100, 50, 10 or 5 pM.
- affinity less than 800, 400, 200, 100 50, 10 or 5 nM, more preferably less than 1 nM, such as less than 500, 200, 100, 50, 10 or 5 pM.
- a variety of methods of measuring binding affinity are known in the art, any of which can be used for purposes of the present invention (see e.g.
- a "KD” or “KD value” can be measured by using an ELISA as described in the Examples herein or by using surface plasmon resonance assays using a BIAcoreTM-2000 or a BIAcore TM- 3000 (BIAcore, Inc., Piscataway, NJ)
- a BIAcoreTM-2000 or a BIAcore TM- 3000 BIAcore, Inc., Piscataway, NJ
- carboxymethylated dextran biosensor chips CM5, BIAcore Inc.
- EDC N-ethyl-N’-(3-dimethylaminopropyl)- carbodiimide hydrochloride
- NHS N-hydroxysuccinimide
- Antigen is diluted with 10mM sodium acetate, pH 4.8, into 5 pg/ml ( ⁇ 0.2 pM) before injection at a flow rate of 5 pl/minute to achieve approximately 10 response units (RU) of coupled protein. Following the injection of antigen, 1 M ethanolamine is injected to block unreacted groups. For kinetics measurements, two-fold serial dilutions of the antibody or Fab (0.78 nM to 500 nM) are injected in PBS with 0.05% Tween 20 (PBST) at 25°C at a flow rate of approximately 25pl/min.
- PBST Tween 20
- association rates (k on ) and dissociation rates (kotr) are calculated using a simple one-to-one Langmuir binding model (BIAcore Evaluation Software version 3.2) by simultaneous fitting the association and dissociation sensogram.
- the equilibrium dissociation constant (KD) is calculated as the ratio koff/kon. See, e.g., Chen, Y., et al., (1999) J. Mol Biol 293:865-881 .
- humanized antibody or “humanized immunoglobulin” refers to an immunoglobulin comprising a human framework, at least one and preferably all complementarity determining regions (CDRs) from a non-human antibody, and in which any constant region present is substantially identical to a human immunoglobulin constant region, i.e., at least about 85%, at least 90%, and at least 95% identical.
- CDRs complementarity determining regions
- all parts of a humanized immunoglobulin, except possibly the CDRs are substantially identical to corresponding parts of one or more native human immunoglobulin sequences.
- framework residues in the human framework regions will be substituted with the corresponding residue from the CDR donor antibody to alter, preferably improve, antigen binding.
- framework substitutions are identified by methods well known in the art, e.g., by modeling of the interactions of the CDR and framework residues to identify framework residues important for antigen binding and sequence comparison to identify unusual framework residues at particular positions. See, e.g., Queen et al., U.S. Pat. Nos. 5,530,101 ; 5,585,089; 5,693,761 ; 5,693,762; 6,180,370 (each of which is incorporated by reference in its entirety). Antibodies can be humanized using a variety of techniques known in the art including, for example, CDR-grafting (EP 239,400; PCT publication WO 91/09967; U.S. Pat. Nos.
- One class of antigen-binding regions for use in the invention comprises immunoglobulin single variable domains (ISVDs) with an amino acid sequence that corresponds to the amino acid sequence of a naturally occurring single variable domain, but that has been "humanized", i.e. by replacing one or more amino acid residues in the amino acid sequence of said naturally occurring single variable domain sequence by one or more of the amino acid residues that occur at the corresponding positions) in a VH domain from a conventional 4-chain antibody from a human being.
- ISVDs immunoglobulin single variable domains
- FR Framework or "FR” refers to variable domain residues other than hypervariable region (HVR) residues.
- the FR of a variable domain generally consists of four FR domains: FR1 , FR2, FR3, and FR4. Accordingly, the HVR and FR sequences generally appear in the following sequence in VH (or VL): FR1-H1 (L1)-FR2-H2(L2)-FR3-H3(L3)-FR4.
- acceptor human framework for the purposes herein is a framework comprising the amino acid sequence of a light chain variable domain (VL) framework or a heavy chain variable domain (VH) framework derived from a human immunoglobulin framework or a human consensus framework, as defined below.
- An acceptor human framework "derived from” a human immunoglobulin framework or a human consensus framework may comprise the same amino acid sequence thereof, or it may contain amino acid sequence changes. In some embodiments, the number of amino acid changes are 10 or less, 9 or less, 8 or less, 7 or less, 6 or less, 5 or less, 4 or less, 3 or less, or 2 or less.
- the VL acceptor human framework is identical in sequence to the VL human immunoglobulin framework sequence or human consensus framework sequence.
- human antibodies can be generated.
- human antibody is meant an antibody containing entirely human light and heavy chains as well as constant regions, produced by any of the known standard methods.
- transgenic animals e.g., mice
- transgenic animals e.g., mice
- the homozygous deletion of the antibody heavy-chain joining region PH gene in chimeric and germline mutant mice results in the complete inhibition of endogenous antibody production.
- Transfer of the human germ-line immunoglobulin gene array in such germ line mutant mice will result in the production of human antibodies after immunization.
- phage display technology can be used to produce human antibodies and antibody fragments in vitro, from immunoglobulin variable (V) domain gene repertoires from donors.
- antibody V domain genes are cloned in-frame into either a major or minor coat protein gene of a filamentous bacteriophage, such as M13 or fd, and displayed as functional antibody fragments on the surface of the phage particle.
- a filamentous bacteriophage such as M13 or fd
- the filamentous particle contains a single-stranded DNA copy of the phage genome
- selections based on the functional properties of the antibody also result in selection of the gene encoding the antibody exhibiting those properties.
- the phage mimics some of the properties of the B cell.
- Phage display can be performed in a variety of formats; for their review see, e.g., Johnson, Kevin S. and Chiswell, David J., Current Opinion in Structural Biology 3:564-57 1 (1993).
- Human antibodies may also be generated by in vitro activated B cells or SCID mice with its immune system reconstituted with human cells. Once a human antibody is obtained, its coding DNA sequences can be isolated, cloned and introduced into an appropriate expression system i.e. a cell line, preferably from a mammal, which subsequently express and liberate it into a culture media from which the antibody can be isolated.
- an appropriate expression system i.e. a cell line, preferably from a mammal, which subsequently express and liberate it into a culture media from which the antibody can be isolated.
- Amino acid substitutions are herein indicated as A O XA S , wherein A o indicates the original amino acid, X indicates the position of that original amino acid in the original amino acid sequence, and As indicates the substitute amino acid as present in that position in the modified amino acid sequence.
- a o indicates the original amino acid
- X indicates the position of that original amino acid in the original amino acid sequence
- As indicates the substitute amino acid as present in that position in the modified amino acid sequence.
- V153Q denotes that the original amino acid valine (V) in position 153 is changed to a glutamine (Q).
- Amino acid deletions are herein indicated as A 0 X-, wherein A o indicates the original amino acid, X indicates the position of that original amino acid in the original amino acid sequence and the dash indicates that the original amino acid A o is no longer present in the modified amino acid sequence.
- a o indicates the original amino acid
- X indicates the position of that original amino acid in the original amino acid sequence
- the dash indicates that the original amino acid A o is no longer present in the modified amino acid sequence.
- N59- indicates that the asparagine (N) in position 59 is deleted in the modified amino acid sequence.
- Amino acid deletions are herein indicated as A 0 X insAi- n , wherein A o indicates the original amino acid, X indicates the position of that original amino acid in the original amino acid sequence and insAi-n indicates that amino acids 1 - n replace the original amino acid A o .
- a o indicates the original amino acid
- X indicates the position of that original amino acid in the original amino acid sequence
- insAi-n indicates that amino acids 1 - n replace the original amino acid A o .
- G84 insGGGGG indicates that the original glycine in position 84 is replaced by a sequence of 5 glycines in the modified amino acid sequence.
- NK cells refers to a sub-population of lymphocytes that is involved in innate immunity.
- NK cells can be identified by virtue of certain characteristics and biological properties, such as the expression of specific surface antigens including CD56 and/or NKp46 for human NK cells, the absence of the alpha/beta or gamma/delta TCR complex on the cell surface, the ability to recognize and kill cells that fail to express “self MHC/HLA antigens by the activation of specific cytolytic machinery, the ability to kill tumor cells or other diseased cells that express a ligand for NK activating receptors, and the ability to release protein molecules called cytokines that stimulate or inhibit the immune response.
- NK cells any of these characteristics and activities can be used to identify NK cells, using methods well known in the art. Any subpopulation of NK cells will also be encompassed by the term NK cells.
- active NK cells designate biologically active NK cells, including NK cells having the capacity of lysing target cells or enhancing the immune function of other cells.
- NK cells can be obtained by various techniques known in the art, such as isolation from blood samples, cytapheresis, tissue or cell collections, etc. Useful protocols for assays involving NK cells can be found in Natural Killer Cells Protocols (2000, edited by Campbell KS and Colonna M). Humana Press, pp. 219-238).
- tumor associated antigen means any antigen including but not limited to a protein, glycoprotein, ganglioside, carbohydrate, lipid that is associated with cancer. Such antigen can be expressed on malignant cells or in the tumor microenvironment such as on tumor-associated blood vessels, extracellular matrix, mesenchymal stroma, or immune infiltrates.
- TAA tumor associated antigen
- homologues of a wild-type TAA that differs therefrom as a result of tumor-specific mutations (which can be patient-specific or shared) and that result in altered amino acid sequences, i.e. so-called neoantigens.
- nucleic acid construct or “nucleic acid vector” is herein understood to mean a man-made nucleic acid molecule resulting from the use of recombinant DNA technology.
- the term “nucleic acid construct” therefore does not include naturally occurring nucleic acid molecules although a nucleic acid construct may comprise (parts of) naturally occurring nucleic acid molecules.
- expression vector or expression construct” refer to nucleic acid molecules that are capable of effecting expression of a nucleotide sequence or gene in host cells or host organisms compatible with such expression vectors or constructs. These expression vectors typically include regulatory sequence elements that are operably linked to the nucleotide sequence to be expressed to effect its expression.
- Such regulatory elements usually at least include suitable transcription regulatory sequences and optionally, 3’ transcription termination signals. Additional elements necessary or helpful in effecting expression may also be present, such as expression enhancer elements.
- the expression vector will be introduced into a suitable host cell and be able to effect expression of the coding sequence in an in vitro cell culture of the host cell.
- the expression vector will be suitable for replication in the host cell or organism of the invention whereas an expression construct will usually integrate in the host cell’s genome for it to be maintained. Techniques for the introduction of nucleic acid into cells are well established in the art and any suitable technique may be employed, in accordance with the particular circumstances.
- suitable techniques may include calcium phosphate transfection, DEAE-Dextran, electroporation, liposome-mediated transfection and transduction using retrovirus or other virus, e.g. adenovirus, AAV, lentivirus or vaccinia.
- retrovirus or other virus e.g. adenovirus, AAV, lentivirus or vaccinia.
- suitable techniques may include calcium chloride transformation, electroporation and transfection using bacteriophage.
- the introduced nucleic acid may be on an extra-chromosomal vector within the cell or the nucleic acid may be integrated into the genome of the host cell. Integration may be promoted by inclusion of sequences within the nucleic acid or vector which promote recombination with the genome, in accordance with standard techniques.
- the introduction may be followed by expression of the nucleic acid to produce the encoded fusion protein.
- host cells which may include cells actually transformed although more likely the cells will be descendants of the transformed cells
- expression may require the activation of the inducible promoter.
- promoter or “transcription regulatory sequence” refers to a nucleic acid fragment that functions to control the transcription of one or more coding sequences, and is located upstream with respect to the direction of transcription of the transcription initiation site of the coding sequence, and is structurally identified by the presence of a binding site for DNA- dependent RNA polymerase, transcription initiation sites and any other DNA sequences, including, but not limited to transcription factor binding sites, repressor and activator protein binding sites, and any other sequences of nucleotides known to one of skill in the art to act directly or indirectly to regulate the amount of transcription from the promoter.
- a “constitutive” promoter is a promoter that is active in most tissues under most physiological and developmental conditions.
- An “inducible” promoter is a promoter that is physiologically or developmentally regulated, e.g. by the application of a chemical inducer.
- selectable marker is a term familiar to one of ordinary skill in the art and is used herein to describe any genetic entity which, when expressed, can be used to select for a cell or cells containing the selectable marker.
- reporter may be used interchangeably with marker, although it is mainly used to refer to visible markers, such as green fluorescent protein (GFP). Selectable markers may be dominant or recessive or bidirectional.
- operably linked refers to a linkage of polynucleotide elements in a functional relationship.
- a nucleic acid is “operably linked” when it is placed into a functional relationship with another nucleic acid sequence.
- a transcription regulatory sequence is operably linked to a coding sequence if it affects the transcription of the coding sequence.
- Operably linked means that the DNA sequences being linked are typically contiguous and, where necessary to join two protein encoding regions, contiguous and in reading frame.
- protein or “polypeptide” are used interchangeably and refer to molecules consisting of a chain of amino acids, without reference to a specific mode of action, size, 3- dimensional structure or origin.
- signal peptide (sometimes referred to as signal sequence) is a short peptide
- the present invention therefore provides novel muteins of the extracellular domain (ECD) of 4-1 BBL having an altered affinity for 4-1 BB.
- ECD extracellular domain
- 4-1 BBL ECD muteins described herein and having a reduced affinity for 4-1 BB, and conjugates described herein comprising such 4-1 BBL ECD muteins will have reduced pleiotropic- and undesired side-effects, when present in the bloodstream, while, when present at targeted sites, their avidity will ensure their local efficacy.
- These novel 4-1 BBL ECD muteins are combined with IL-21 muteins having a reduced affinity for IL-21 R, in conjugates with anti-TROP2 antigen-binding proteins.
- novel conjugates described herein are designed to utilize the combined immune potentiating activity of 4-1 BBL ECD and IL-21 (which may be prerequisite to address toxicity and off-target immune suppression), to maximize efficacy at TROP2-targeted tumor loci, while at the same time improve the feasibility of dosing of the conjugates in the clinic.
- 4-1 BB is a member of the tumor necrosis factor receptor family. Its alternative names are tumor necrosis factor receptor superfamily member 9 (TNFRSF9), CD137 and induced by lymphocyte activation (ILA). 4-1 BB is encoded by the TNFRSF9 gene (Entrez Gene ID: 3604). An amino acid sequence for human 4-1 BB is described in NCBI accession numbers NP_001552, which is incorporated as SEQ ID NO: 175, wherein the mature 4-1 BB corresponds to positions 24 - 255. 4-1 BB is known as a co-stimulatory immune checkpoint molecule. 4-1 BB is expressed by activated T cells of both the CD4+ and CD8+ lineages, as well as on activated NK cells.
- NK cells with increased 4-1 BB expression are known to be highly active against target cells (e.g. tumor cells) expressing 4-1 BB ligand.
- 4-1 BB ligand (4-1 BBL) also known as TNFSF9 or CD137L, is a protein that in humans is encoded by the TNFSF9 gene (Entrez Gene ID: 8744).
- TNFSF9 Entry Gene ID: 8744
- An amino acid sequence for human 4-1 BBL is described in NCBI accession numbers NP_003802, the disclosure of which is incorporated herein by reference.
- the 4-1 BB/4-1 BBL complex consists of three monomeric 4-1 BBs bound to a trimeric 4-1 BBL. Each 4-1 BB monomer binds to two 4-1 BBLs via cysteine-rich domains (CRDs). The interaction between 4-1 BB and the second 4-1 BBL is required to stabilize their interactions.
- CCDs cysteine-rich domains
- an “4-1 BB agonist” is an agent that has “agonist” activity at the 4-1 BB, which means that the agent that can cause or increase "4-1 BB signaling".
- “4-1 BB signaling” refers to an ability of 4-1 BB, e.g. when expressed on the surface of T, B and NK cells and triggered by its natural ligand 4-1 BBL, to activate or transduce an intracellular signaling pathway.
- the “natural 4-1 BB ligand” is herein understood as the extracellular domain (ECD) of a human wild type 4-1 BBL comprising or consisting of an amino acid sequence from position 71 to 254 of the amino acid sequence of human 4-1 BBL (i.e. SEQ ID NO: 37).
- a 4-1 BBL extracellular domain (ECD) is herein thus understood as a polypeptide comprising or consisting of an amino acid sequence from positions 71 to 254 of human 4-1 BBL, or a fragment thereof having 4-1 BB agonist activity.
- 4-1 BB agonist activity i.e. changes in 4-1 BB signaling activity
- 4-1 BB signaling activity can be measured, for example, by assays designed to measure changes in the 4-1 BB signaling pathways, e.g. by monitoring phosphorylation of signal transduction components, assays to measure the association of certain signal transduction components with other proteins or intracellular structures, or in the biochemical activity of components such as kinases, or indirectly by a downstream effect mediated by 4-1 BB (e.g. production of specific cytokines).
- a suitable cell-based assay for in vitro biological activity of a 4-1 BB agonist is e.g. described in Zhang et al.
- a 4-1 BBL ECD trimer comprising the amino acid sequence of SEQ ID NO: 36, or an anti-CD137 agonist antibody (such the antibody 2A, Epstein et al., Tumor necrosis imaging and treatment of solid tumors. In: V. P. Torchilin, editor. Handbook of targeted delivery of imaging agents, Vol. 16. Boca Raton: CRCPress; 1995. p. 259.) can serve as a positive control in an assay for 4-1 BB agonist activity and can also be used as a reference for the amount of 4-1 BB agonist activity of a given nonnatural 4-1 BB agonist, such as a multispecific antigen binding protein as described herein comprising a 4-1 BB agonist.
- the data presented herein supports the use of carefully designed 4- 1 BBL ECD muteins to achieve 4-1 BB signalling at the appropriate time and place and to improve pharmacokinetics of therapeutics comprising such 4-1 BBL ECD muteins.
- the 4-1 BBL ECD muteins provided herein are designed to reduce potential unwanted effects in the absence of the target cells, e.g. hepatotoxicity and cytokine release.
- the present disclosure provides muteins of the 4-1 BBL ECD comprising at least one substitution, deletion and/or insertion.
- Amino acid substitutions, deletions and insertions in a 4-1 BBL ECD mutein provided herein are indicated relative to the wild-type human 4-1 BBL ECD amino acid sequence, which is provided herein as SEQ ID NO: 37.
- a wild-type human 4-1 BBL ECD preferably comprises an amino acid sequence having, with increasing preference, at least 85%, at least 90%, at least 95%, at least 96%, at least 97%, at least 98%, at least 99% or 100% sequence identity with SEQ ID NO: 37.
- a 4-1 BBL ECD mutein provided herein comprises the amino acid sequence of SEQ ID NO: 49, wherein SEQ ID NO: 49 is
- PRSE (SEQ ID NO: 49), wherein X represents any amino acid, and wherein the 4-1 BBL ECD mutein amino acid sequence differs from the amino acid sequence of the wild type human 4-1 BBL ECD (SEQ ID NO: 37) by at least one amino acid.
- the amino acid positions in the amino acid sequence of the 4-1 BBL ECD muteins of SEQ ID NO: 49, as referred to herein correspond to the amino acid positions of the full- length 4-1 BBL amino acid sequence.
- the first amino acid position in SEQ ID NO: 49 is referred to as position 71 , from which the subsequent amino acid positions are counted, up to the last amino acid in position 254.
- a 4-1 BBL ECD mutein comprising at least one amino acid substitution, deletion or insertion at a position in SEQ ID NO: 37 selected from the group consisting of the positions: 154, 153, 110, 227, 101 , 230, 100, 114, 115, 116, and 171 , in decreasing preference.
- the 4-1 BBL ECD mutein comprises no other amino acid sequence modification than the at least one amino acid substitution, deletion or insertion at a position in SEQ ID NO: 37 selected from the group consisting of the positions: 154, 153, 110, 227, 101 , 110, 230, 100, 114, 115, 116, and 171.
- a 4-1 BBL ECD mutein provided herein comprises the amino acid sequence of SEQ ID NO: 49, wherein SEQ ID NO: 49 differs from SEQ ID NO: 37 by at least one amino acid at a position designated by X in SEQ ID NO: 49.
- the 4-1 BBL ECD mutein comprising SEQ ID NO: 49 has, with increasing preference, at least 80%, at least 81 %, at least 82%, at least 83%, at least 84%, at least 85%, at least 86%, at least 87%, at least 88%, at least 89%, at least 90%, at least 91 %, at least 92%, at least 93%, at least 94%, at least 95%, at least 96%, at least 97%, at least 98%, at least 99%, or at least 99.4% sequence identity to SEQ ID NO: 37.
- a 4-1 BBL ECD mutein comprises an amino acid sequence having, with increasing preference, at least 85%, at least 90%, at least 95%, at least 96%, at least 97%, at least 98%, at least 99% or 100% sequence identity with SEQ ID NO: 37, and wherein the amino acid sequence comprises at least one amino acid substitution selected from the group consisting of: A154D; A154E; V153Q; Q227E; L101N; Y110Q; Q230K; V100Q; V100T; V100S; V100A; V100G; V100N; V100D; V100E; V100K; V100R; L101E; L101Q; L101D; L101R; L101K; Y110E; Y110N; Y110D; Y110R; Y110K; Y110S; Y110A; Y110G; Y110T; G114K; G114R; G114Q; G114D; G114E; G114N;
- a 4- 1BBL ECD mutein comprising at least one amino acid substitution selected from the group consisting of: A154D; A154E; V153Q; Q227E; L101N; Y110Q; Q230K; V100Q; V100T; V100S; V100A; V100G; V100N; V100D; V100E; V100K; V100R; L101E; L101Q; L101D; L101R; L101K; Y110E; Y110N; Y110D; Y110R; Y110K; Y110S; Y110A; Y110G; Y110T; G114K; G114R; G114Q; G114D; G114E; G114N; G114S; G114A; G114G; G114T; L115R; L115K; L115Q; L115N; L115D; L115D; L115D; L115
- the 4-1 BBL ECD mutein comprises no other amino acid sequence modification than the at least one amino acid substitution selected from the group consisting of: A154D; A154E; V153Q; Q227E; L101N; Y110Q; Q230K; V100Q; V100T; V100S; V100A; V100G; V100N; V100D; V100E; V100K; V100R; L101E; L101Q; L101D; L101R;
- a 4-1 BBL ECD mutein comprising at least two, three, four or five amino acid substitutions selected from the group consisting of: A154D; A154E; V153Q; Q227E; L101N; Y110Q; Q230K; V100Q; V100T; V100S; V100A; V100G; V100N; V100D; V100E; V100K; V100R; L101E; L101Q; L101D; L101R; L101K; Y110E; Y110N; Y110D; Y110R; Y110K; Y110S; Y110A; Y110G; Y110T; G114K; G114R; G114Q; G114D; G114E; G114N; G114S; G114A; G114G; G114T; L115R; L115K; L115Q; L115N; L115D; L115E; L115S; L115A; L115G; L115T; G114K; G
- the 4-1 BBL ECD mutein comprises no other amino acid sequence modification than theat least two, three, four or five amino acid substitutions selected from the group consisting of: A154D; A154E; V153Q; Q227E; L101 N; Y110Q; Q230K; V100Q; V100T; V100S; V100A;
- a 4-1 BBL ECD mutein provided herein comprises the amino acid sequence of SEQ ID NO: 49, wherein the 4-1 BBL ECD mutein amino acid sequence differs from the amino acid sequence of the wild type human 4-1 BBL ECD (SEQ ID NO: 37) at least at position 154, and wherein preferably the 4-1 BBL ECD mutein comprises a A154D or A154E substitution.
- a 4-1 BBL ECD mutein comprising a A154D or A154E substitution in combination with at least one, two, three, four or five amino acid substitutions selected from the group consisting of: V100T; V100Q; V100S; V100A; V100G; V100N; V100D; V100E; V100K; V100R; L101 N; L101 E; L101Q; L101 D; L101 R; L101 K; Y110Q; Y110E; Y110N; Y110D; Y110R; Y110K; Y110S; Y110A; Y110G; Y110T; G1 14K; G1 14R; G1 14Q; G1 14D; G1 14E; G1 14N; G1 14S; G1 14A; G1 14G; G114T; L115R; L115K; L115Q; L115N; L115D; L115E; L115S; L115A; L115G; G114T; L115
- a 4-1 BBL ECD mutein comprising a combination of substitutions selected from the group consisting of: A154D and V153Q; A154D and G155Q; A154D and Q227E; A154D and L101 N; A154D and Y110Q; A154D and Q230K; A154D and V100Q; A154D and V100T; A154D and V100S; A154D and V100A; A154D and V100G; A154D and V100N; A154D and V100D; A154D and V100E; A154D and V100K; A154D and V100R; A154D and L101 E; A154D and L101 Q; A154D and L101 D L101 R; A154D and L101 K; A154D and Y110E; A154D and Y1 10N; A154D and Y110D; A154D and Y110R; A154D and Y110K; A154D and Y110S; A154D and Y1
- a 4-1 BBL ECD mutein provided herein comprises the amino acid sequence of SEQ ID NO: 49, wherein the 4-1 BBL ECD mutein amino acid sequence differs from the amino acid sequence of the wild type human 4-1 BBL ECD (SEQ ID NO: 37) at least at position 100, and wherein preferably the 4-1 BBL ECD mutein comprises a V100T or a V100Q substitution.
- a 4-1 BBL ECD mutein comprising a V153Q substitution in combination with at least one, two, three, four or five amino acid substitutions selected from the group consisting of: V100T; L101 N; Y110Q; G1 14K; L115R; A116D; R171 D; Q227E; Q227R; Q230S; and Q230K.
- a 4-1 BBL ECD mutein comprising a combination of substitutions selected from the group consisting of: V153Q and V100T; V153Q and L101 N; V153Q and Y110Q; V153Q and G114K; V153Q and L115R; V153Q and A116D; V153QV153Q and R171 D; V153Q and Q227E; V153Q and Q227R; V153Q and Q230S; and, V153Q and Q230K.
- a 4-1 BBL ECD mutein provided herein comprises the amino acid sequence of SEQ ID NO: 49, wherein the 4-1 BBL ECD mutein amino acid sequence differs from the amino acid sequence of the wild type human 4-1 BBL ECD (SEQ ID NO: 37) at least at position 100, and wherein preferably the 4-1 BBL ECD mutein comprises an L101 N substitution.
- a 4-1 BBL ECD mutein comprising an L101 N substitution in combination with at least one, two, three, four or five amino acid substitutions selected from the group consisting of: Y110Q; G1 14K; L115R; A116D; R171 D; Q227E; Q227R; Q230S; and Q230K.
- a 4-1 BBL ECD mutein comprising a combination of substitutions selected from the group consisting of L101 N and Y110Q; L101 N and G114K; L101 N and L115R; L101 N and A116D; L101 N and R171 D; L101 N and Q227E; L101 N and Q227R; L101 N and Q230S; and, L101 N and Q230K.
- a 4-1 BBL ECD mutein provided herein comprises the amino acid sequence of SEQ ID NO: 49, wherein the 4-1 BBL ECD mutein amino acid sequence differs from the amino acid sequence of the wild type human 4-1 BBL ECD (SEQ ID NO: 37) at least at position 100, and wherein preferably the 4-1 BBL ECD mutein comprises a Y110Q substitution.
- a 4-1 BBL ECD mutein comprising a Y110Q substitution in combination with at least one, two, three, four or five amino acid substitutions selected from the group consisting of: G114K; L115R; A116D; R171 D; Q227E; Q227R; Q230S; and Q230K.
- a 4-1 BBL ECD mutein comprising a combination of substitutions selected from the group consisting of Y110Q and G1 14K; Y1 10Q and L1 15R; Y110Q and A1 16D; Y110Q and R171 D; Y110Q and Q227E; Y110Q and Q227R; Y110Q and Q230S; and, Y110Q and Q230K.
- a 4-1 BBL ECD mutein comprising the combination of substitutions Y110Q, A154D and Q227E.
- a 4-1 BBL ECD mutein provided herein comprises the amino acid sequence of SEQ ID NO: 49, wherein the 4-1 BBL ECD mutein amino acid sequence differs from the amino acid sequence of the wild type human 4-1 BBL ECD (SEQ ID NO: 37) at least at position 100, and wherein preferably the 4-1 BBL ECD mutein comprises a G114K substitution.
- a 4-1 BBL ECD mutein comprising a G114K substitution in combination with at least one, two, three, four or five amino acid substitutions selected from the group consisting of: L115R; A116D; R171 D; Q227E; Q227R; Q230S; and Q230K.
- a 4-1 BBL ECD mutein comprising a combination of substitutions selected from the group consisting of G114K and G1 14K; G114K and L1 15R; G1 14K and A1 16D; G114K and R171 D; G114K and Q227E; G114K and Q227R; G114K and Q230S; and, G114K and Q230K.
- a 4-1 BBL ECD mutein provided herein comprises the amino acid sequence of SEQ ID NO: 49, wherein the 4-1 BBL ECD mutein amino acid sequence differs from the amino acid sequence of the wild type human 4-1 BBL ECD (SEQ ID NO: 37) at least at position 100, and wherein preferably the 4-1 BBL ECD mutein comprises an L115R substitution.
- a 4-1 BBL ECD mutein comprising an L115R substitution in combination with at least one, two, three, four or five amino acid substitutions selected from the group consisting of: A116D; R171 D; Q227E; Q227R; Q230S; and Q230K.
- a 4-1 BBL ECD mutein comprising a combination of substitutions selected from the group consisting of L115R and A116D; L115R and R171 D; L115R and Q227E; L115R and Q227R; L115R and Q230S; and, L115R and Q230K.
- a 4-1 BBL ECD mutein provided herein comprises the amino acid sequence of SEQ ID NO: 49, wherein the 4-1 BBL ECD mutein amino acid sequence differs from the amino acid sequence of the wild type human 4-1 BBL ECD (SEQ ID NO: 37) at least at position 100, and wherein preferably the 4-1 BBL ECD mutein comprises an A116D substitution.
- a 4-1 BBL ECD mutein comprising an A116D substitution in combination with at least one, two, three or four amino acid substitutions selected from the group consisting of: R171 D; Q227E; Q227R; Q230S; and Q230K.
- a 4-1 BBL ECD mutein comprising a combination of substitutions selected from the group consisting of: A116D and R171 D; A116D and Q227E; A116D and Q227R; A116D and Q230S; and, A116D and Q230K.
- a 4-1 BBL ECD mutein provided herein comprises the amino acid sequence of SEQ ID NO: 49, wherein the 4-1 BBL ECD mutein amino acid sequence differs from the amino acid sequence of the wild type human 4-1 BBL ECD (SEQ ID NO: 37) at least at position 100, and wherein preferably the 4-1 BBL ECD mutein comprises an R171 D substitution.
- a 4-1 BBL ECD mutein comprising an R171 D substitution in combination with at least one or two amino acid substitutions selected from the group consisting of: Q227E; Q227R; Q230S; and Q230K.
- a 4-1 BBL ECD mutein comprising a combination of substitutions selected from the group consisting of: R171 D and Q227E; R171 D and Q227R; R171 D and Q230S; and, R171 D and Q230K.
- a 4-1 BBL ECD mutein provided herein comprises the amino acid sequence of SEQ ID NO: 49, wherein the 4-1 BBL ECD mutein amino acid sequence differs from the amino acid sequence of the wild type human 4-1 BBL ECD (SEQ ID NO: 37) at least at position 100, and wherein preferably the 4-1 BBL ECD mutein comprises a Q227E or Q227R substitution.
- a 4-1 BBL ECD mutein comprising a Q227E substitution in combination with at least one amino acid substitution selected from Q230S and Q230K.
- a 4-1 BBL ECD mutein comprising a combination of substitutions selected from the group consisting of: Q227E and Q230S; and, Q227E and Q230K.
- a 4-1 BBL ECD mutein comprising a Q227R substitution in combination with at least one amino acid substitution selected from Q230S and Q230K.
- a 4-1 BBL ECD mutein comprising a combination of substitutions selected from the group consisting of: Q227R and Q230S; and, Q227R and Q230K.
- a 4-1 BBL ECD mutein comprising a combination of substitutions at positions in SEQ ID NO: 37, selected from the group consisting of: Y110Q, V153Q and Q227E; L101 N, Y110Q and V153Q; V100Q, Y110Q and V153Q; L101 N, V153Q and Q227E; Y110Q, A154D and Q227E; Y110Q and V153Q; V153Q and Q227E; Y110Q and Q227E; and, L101 N and Q227E.
- substitutions to aspartate, such A154D, when followed (in an N- to C-terminal direction) by a G-, A- or S-residue, such as G155, can potentially introduce an aspartate isomerization site, which can lead to the instability and/or increased degradation rate of a mutein comprising such isomerization site.
- a substitution to aspartate, when followed by a G- , A- or S-residue the substitution to aspartate is combined with a substitution of the subsequent G- , A- or S-residue to any amino acid residue other than G, A, S or T.
- a 4- 1 BBL ECD mutein comprising a combination of substitutions at positions in SEQ ID NO: 37, selected from the group consisting of: Y110D and S111X; L115D and A116X; A116D and G1 17X; V153D and A154X; A154 D and G155X; R171 D and S172X; and, Q230D andG231X, wherein X is any to any amino acid residue other than G, A, S or T, whereby preferably X is Q, E, N, D, H, K, R or Y.
- any 4-1 BBL ECD mutein comprising the A154D substitution is combined with a G155X substitution, wherein X is any to any amino acid residue other than G, A, S or T, whereby preferably X is Q, E, N, D, H, K, R or Y, of which Q is most preferred.
- a 4-1 BBL ECD mutein as structurally defined above, which 4-1 BBL ECD mutein binds to its cognate receptor 4-1 BB with a reduced affinity, relative to the affinity of wild-type 4-1 BBL ECD for the 4-1 BB.
- a 4-1 BBL ECD mutein as structurally defined above, which 4-1 BBL ECD mutein binds to its cognate receptor human 4-1 BB with a reduced affinity, relative to the affinity of wild-type 4-1 BBL ECD for the human 4-1 BB, e.g. a human 4-1 BB having an amino acid sequence comprised in SEQ ID NO: 175.
- a 4-1 BBL ECD mutein with reduced affinity for its cognate receptor 4-1 BB will also have a reduced affinity for 4-1 BB when present in a homotrimeric fusion protein comprising three 4-1 BBL ECD mutein monomers connected through polypeptide linkers, e.g. (GGGGS)4.
- polypeptide linkers e.g. (GGGGS)4.
- the affinity of a 4- 1 BBL ECD mutein for its cognate receptor 4-1 BB is herein defined as the affinity for 4-1 BB as determined when the 4-1 BBL ECD mutein is present in a homotrimeric fusion protein comprising three identical 4-1 BBL ECD mutein monomers connected through (GGGGS)4 polypeptide linkers, whereby the homotrimer can be present in a conjugate with an antibody (e.g. trastuzumab), which conjugate can further comprise IL-21 .
- an antibody e.g. trastuzumab
- a 4-1 BBL ECD mutein having a with a reduced affinity for 4-1 BB, relative to the affinity of wild-type 4-1 BBL ECD, wherein the 4-1 BBL ECD mutein comprises at least one substitution selected from the group consisting of: V100T; V100Q; L101 N; Y110Q; G1 14K; V153Q; R171 D; Q227E; Q227R; Q230S; Q230K; A116D; A154D; and A154E; or wherein the 4-1 BBL ECD mutein comprises a combination of substitutions selected from the group consisting of: Y110Q, V153Q and Q227E; L101 N, Y110Q and V153Q; V100Q, Y110Q and V153Q; L101 N, V153Q and Q227E; Y1 10Q, A154D and Q227E; A154D and G155Q; Y110Q and V153Q; V153Q and Q227E
- the 4-1 BBL ECD muteins provided herein bind to 4-1 BB in a non-covalent and reversible manner.
- the binding strength of a 4-1 BBL ECD mutein to 4-1 BB may be described in terms of its affinity, a measure of the strength of interaction between the binding site of the mutein and 4-1 BB.
- a 4-1 BBL ECD mutein provided herein has a low- affinity for 4-1 BB and thus will bind a lesser amount of 4-1 BB than a wild type 4-1 BBL.
- a 4-1 BBL ECD mutein provided herein has an equilibrium association constant, KA, which is, with decreasing preference, at least 10 3 M -1 , at least 10 4 M -1 , at least 10 5 M -1 , at least 10 6 M’ 1 , at least 10 7 M -1 , at least 10 8 M -1 , at least 10 9 M -1 , or at least 10 1 ° M -1 .
- KA can be influenced by factors including pH, temperature and buffer composition.
- the binding strength of a 4-1 BBL ECD mutein provided herein to 4-1 BB may be described in terms of its affinity, i.e. KD.
- KD is the equilibrium dissociation constant, a ratio of koff/kon, between the 4-1 BBL ECD mutein and 4-1 BB.
- KD and KA are inversely related.
- the KD value relates to the concentration of the mutein (the amount of mutein needed for a particular experiment or application) and so the lower the KD value (lower concentration needed) the higher the affinity of the mutein.
- the binding strength of a 4-1 BBL ECD mutein provided herein to 4-1 BB may be described in terms of KD.
- the KD of a 4-1 BBL ECD mutein provided herein is about 10 -3 M, about 10 -4 M, about 10 -5 M, about 10 -6 M, or less.
- the KD of a 4-1 BBL ECD mutein provided herein is micromolar, nanomolar, or picomolar. In one embodiment, the KD of a 4-1 BBL ECD mutein provided herein is within a range of about 10 3 to 10 -4 M, or about 10 4 to 10 -5 M, or 10 5 to 10 -6 M, or 10 7 to 10 -8 M, 10 8 to 10 -9 M. In one embodiment, a 4-1 BBL ECD mutein provided herein binds to the human 4-1 BB with a Ko that is greater than or is about 140 nM.
- a 4-1 BBL ECD mutein provided herein exhibits a reduction in binding affinity for human 4-1 BB.
- the 4-1 BBL ECD mutein provided herein is a mutein that exhibits at least about a 2-fold, 5-fold, 10-fold, 20-fold, 50-fold, 100-fold, 200-fold, 500-fold, 1000-fold, 2000-fold, 5000-fold or 10.000-fold reduction in binding affinity for 4-1 BB, relative to, relative to the affinity of wild-type 4-1 BBL ECD for 4-1 BB.
- the binding affinity of a 4-1 BBL ECD mutein provided herein for 4-1 BB is determined by SPR, e.g. as described in the Examples herein. In one embodiment, the binding affinity of a 4-1 BBL ECD mutein provided herein for 4-1 BB, is thus determined when the 4-1 BBL ECD mutein is present in a homotrimeric fusion protein comprising three identical 4-1 BBL ECD mutein monomers connected through (GGGGS)4 polypeptide linkers, which homotrimer is present in a conjugate with a monoclonal antibody (e.g. trastuzumab), which conjugate further comprises IL-21 .
- a monoclonal antibody e.g. trastuzumab
- a 4-1 BBL ECD mutein provided herein exhibits a binding affinity for human 4-1 BB, expressed as pKo, that is at least 0.4 lower than the pKo of a wild-type 4-1 BBL ECD for human 4-1 BB.
- pKo is understood herein to be -logio(Ko).
- the 4-1 BBL ECD mutein having at least a 0.4 lower pKo for human 4-1 BB, relative to the pKo of a wild-type 4-1 BBL ECD for human 4-1 BB is a 4-1 BBL ECD mutein comprising at least one substitution selected from the group consisting of: A154D; A154E; a combination of A154D and G155Q; V153Q; Q227E; L101 N; Y110Q; Q230K; V100Q; V100T; and A116D; or the 4-1 BBL ECD mutein comprises no other amino acid sequence modification than the at least one amino acid substitution selected from the group consisting of: A154D; A154E; a combination of A154D and G155Q; V153Q; Q227E; L101 N; Y110Q; Q230K; V100Q; V100T; and A1 16D.
- a 4-1 BBL ECD mutein provided herein exhibits a binding affinity for human 4-1 BB, expressed as pKo, that is at least 0.5 lower than the pKo of a wild-type 4-1 BBL ECD for human 4-1 BB.
- the 4-1 BBL ECD mutein having at least a 0.5 lower pKo for human 4-1 BB, relative to the pKo of a wild-type 4-1 BBL ECD for human 4-1 BB is a 4-1 BBL ECD mutein comprising at least one substitution selected from the group consisting of: A154D; A154E; a combination of A154D and G155Q; V153Q; Q227E; L101 N; Y110Q; Q230K; V100Q; and V100T; or the 4-1 BBL ECD mutein comprises no other amino acid sequence modification than the at least one amino acid substitution selected from the group consisting of: A154D; A154E; a combination of A154D and G155Q; V153Q; Q227E; L101 N; Y1 10Q; Q230K; V100Q; and V100T.
- a 4-1 BBL ECD mutein provided herein exhibits a binding affinity for human 4-1 BB, expressed as pKo, that is at least 1 .0 lower than the pKo of a wild-type 4-1 BBL ECD for human 4-1 BB.
- the 4-1 BBL ECD mutein having at least a 1 .0 lower pKo for human 4-1 BB, relative to the pKo of a wild-type 4-1 BBL ECD for human 4-1 BB is a 4-1 BBL ECD mutein comprising at least one substitution selected from the group consisting of: A154D; A154E; a combination of A154D and G155Q; V153Q; Q227E; L101 N; Y110Q; Q230K; and V100Q; or the
- 4-1 BBL ECD mutein comprises no other amino acid sequence modification than the at least one amino acid substitution selected from the group consisting of: A154D; A154E; a combination of A154D and G155Q; V153Q; Q227E; L101 N; Y110Q; Q230K; and V100Q.
- a 4-1 BBL ECD mutein provided herein exhibits a reduction in activity as measured by a suitable assay for measuring changes in a 4-1 BB signaling pathway as described above, relative to the activity of wild-type 4-1 BBL ECD under corresponding conditions.
- a 4-1 BBL ECD mutein provided herein exhibits at least about a 2-fold, 5-fold, 10-fold, 20-fold, 50-fold, 100-fold, 200-fold, 500-fold, 1000-fold, 2000-fold, 5000-fold or 10.000-fold reduction in activity as measured by a 4-1 BB signaling assay, relative to the activity of wild-type 4- 1 BBL ECD under corresponding conditions.
- a 4-1 BBL ECD mutein provided herein exhibits at least about a 2-fold
- the NK cell proliferation assay is a short-term proliferation assay, measuring proliferation over the course of less than one week, e.g. 3, 4, 5 or 6 days, e.g. as described in the Examples herein.
- the NK cell proliferation assay is a long-term proliferation assay, measuring proliferation over the course of more than one week, e.g. at least 10, 12 or 14 days, e.g. as described in the Examples herein.
- a 4-1 BBL ECD mutein provided herein when present in a homotrimeric fusion protein comprising three identical 4-1 BBL ECD mutein monomers connected through (GGGGS)4 polypeptide linkers, which homotrimer is present in a conjugate with a monoclonal antibody against a TAA (e.g. trastuzumab), which conjugate further comprises IL-21 , exhibits a pECso for induction of proliferation of NK cells in a 5-day NK cell proliferation assay in the presence of tumor cells expressing the TAA (e.g.
- the 4-1 BBL ECD mutein comprises at least one amino acid substitution selected from the group consisting of: A154D; A154E; a combination of A154D and G155Q; V153Q; Q227E; Q227R; L101 N; Y110Q; and V100Q; or the 4-1 BBL ECD mutein comprises no other amino acid sequence modification than the at least one amino acid substitution selected from the group consisting of: A154D; A154E; a combination of A154D and G155Q; V153Q; Q227E; Q227R; L101 N; Y110Q; and V100Q.
- a 4-1 BBL ECD mutein provided herein when present in a homotrimeric fusion protein comprising three identical 4-1 BBL ECD mutein monomers connected through (GGGGS)4 polypeptide linkers, which homotrimer is present in a conjugate with trastuzumab, which conjugate further comprises IL-21 , exhibits a pECso for induction of proliferation of NK cells in a 5- day NK cell proliferation assay in the presence of SKOV3 tumor cells, that is not more than 0.10 log less than the pECso of a corresponding control conjugate comprising wild-type 4-1 BBL ECD in the same assay.
- the 4-1 BBL ECD mutein comprises at least one amino acid substitution selected from the group consisting of: A154D; A154E; a combination of A154D and G155Q; V153Q; Q227E; L101 N; Y110Q; and V100Q; or the 4-1 BBL ECD mutein comprises no other amino acid sequence modification than the at least one amino acid substitution selected from the group consisting of: A154D; A154E; a combination of A154D and G155Q; V153Q; Q227E; L101 N; Y110Q; and V100Q.
- a 4-1 BBL ECD mutein provided herein when present in a homotrimeric fusion protein comprising three identical 4-1 BBL ECD mutein monomers connected through (GGGGS)4 polypeptide linkers, which homotrimer is present in a conjugate with trastuzumab, which conjugate further comprises IL-21 , exhibits a pECso for induction of proliferation of NK cells in a 5- day NK cell proliferation assay in the presence of SKOV3 tumor cells, that is not more than 0.05 log less than the pECso of a corresponding control conjugate comprising wild-type 4-1 BBL ECD in the same assay.
- the 4-1 BBL ECD mutein comprises at least one amino acid substitution selected from the group consisting of: A154D; A154E; and V100Q; or the 4-1 BBL ECD mutein comprises no other amino acid sequence modification than the at least one amino acid substitution selected from the group consisting of: A154D; A154E; a combination of A154D and G155Q; and V100Q.
- a 4-1 BBL ECD mutein provided herein when present in a homotrimeric fusion protein comprising three identical 4-1 BBL ECD mutein monomers connected through (GGGGS)4 polypeptide linkers, which homotrimer is present in a conjugate with trastuzumab, which conjugate further comprises IL-21 , induces a maximal proliferation of NK cells at a saturating concentration of 25 nM of the conjugate in a normalized 5-day NK cell proliferation assay in the presence of SKOV3 tumor cells, which proliferation is at least 70%, 75%, 80%, 85%, 90% or 95% of the proliferation induced by a corresponding control conjugate comprising wild-type IL-21 and a trimer of wild type 4-1 BBL ECD in the same assay.
- the 4-1 BBL ECD mutein comprises at least one amino acid substitution selected from the group consisting of: A154D; A154E; a combination of A154D and G155Q; V153Q; Q227E; Q227R; L101 N; Y110Q; Q230K; and V100Q; or the 4-1 BBL ECD mutein comprises no other amino acid sequence modification than the at least one amino acid substitution selected from the group consisting of: A154D; A154E; a combination of A154D and G155Q; V153Q; Q227E; Q227R; L101 N; Y110Q; Q230K; and V100Q.
- a 4-1 BBL ECD mutein provided herein when present in a homotrimeric fusion protein comprising three identical 4-1 BBL ECD mutein monomers connected through (GGGGS)4 polypeptide linkers, which homotrimer is present in a conjugate with trastuzumab, which conjugate further comprises IL-21 , induces a maximal proliferation of NK cells at a saturating concentration of 25 nM of the conjugate in a normalized 5-day NK cell proliferation assay in the presence of SKOV3 tumor cells, which proliferation is at least 75% of the proliferation induced by a corresponding control conjugate comprising wild-type IL-21 and a trimer of wild type 4-1 BBL ECD in the same assay.
- the 4-1 BBL ECD mutein comprises at least one amino acid substitution selected from the group consisting of: A154D; A154E; V153Q; Q227E; L101 N; Y110Q; Q230K; and V100Q; or the 4-1 BBL ECD mutein comprises no other amino acid sequence modification than the at least one amino acid substitution selected from the group consisting of: A154D; A154E; a combination of A154D and G155Q; V153Q; Q227E; L101 N; Y110Q; Q230K; and V100Q.
- a 4-1 BBL ECD mutein provided herein when present in a homotrimeric fusion protein comprising three identical 4-1 BBL ECD mutein monomers connected through (GGGGS)4 polypeptide linkers, which homotrimer is present in a conjugate with trastuzumab, which conjugate further comprises IL-21 , induces a maximal proliferation of NK cells at a saturating concentration of 25 nM of the conjugate in a normalized 5-day NK cell proliferation assay in the presence of SKOV3 tumor cells, which proliferation is at least 80% of the proliferation induced by a corresponding control conjugate comprising wild-type IL-21 and a trimer of wild type 4-1 BBL ECD in the same assay.
- the 4-1 BBL ECD mutein comprises at least one amino acid substitution selected from the group consisting of: A154D; A154E; a combination of A154D and G155Q; V153Q; Q227E; L101 N; Y110Q; and Q230K; or the 4-1 BBL ECD mutein comprises no other amino acid sequence modification than the at least one amino acid substitution selected from the group consisting of: A154D; A154E; a combination of A154D and G155Q; V153Q; Q227E; L101 N; Y110Q; and Q230K.
- a 4-1 BBL ECD mutein provided herein when present in a homotrimeric fusion protein comprising three identical 4-1 BBL ECD mutein monomers connected through (GGGGS)4 polypeptide linkers, which homotrimer is present in a conjugate with trastuzumab, which conjugate further comprises IL-21 , induces a maximal proliferation of NK cells at a saturating concentration of 25 nM of the conjugate in a normalized 5-day NK cell proliferation assay in the presence of SKOV3 tumor cells, which proliferation is at least 85% of the proliferation induced by a corresponding control conjugate comprising wild-type IL-21 and a trimer of wild type 4-1 BBL ECD in the same assay.
- the 4-1 BBL ECD mutein comprises at least one amino acid substitution selected from the group consisting of: A154D; A154E; a combination of A154D and G155Q; V153Q; and Q227E; or the 4-1 BBL ECD mutein comprises no other amino acid sequence modification than the at least one amino acid substitution selected from the group consisting of: A154D; A154E; a combination of A154D and G155Q; V153Q; and Q227E.
- a 4-1 BBL ECD mutein provided herein when present in a homotrimeric fusion protein comprising three identical 4-1 BBL ECD mutein monomers connected through (GGGGS)4 polypeptide linkers, which homotrimer is present in a conjugate with trastuzumab, which conjugate further comprises IL-21 , induces a maximal proliferation of NK cells at a saturating concentration of 25 nM of the conjugate in a normalized 5-day NK cell proliferation assay in the presence of SKOV3 tumor cells, which proliferation is at least 95% of the proliferation induced by a corresponding control conjugate comprising wild-type IL-21 and a trimer of wild type 4-1 BBL ECD in the same assay.
- the 4-1 BBL ECD mutein comprises at least one amino acid substitution selected from the group consisting of: A154D and A154E; a combination of A154D and G155Q; and the 4-1 BBL ECD mutein comprises no other amino acid sequence modification than the at least one amino acid substitution selected from the group consisting of: A154D; a combination of A154D and G155Q; and A154E.
- a 4-1 BBL ECD mutein as described herein, which, when present in a conjugate with an antigen-binding protein that specifically binds a (target) antigen, as a result of the reduced affinity of the 4-1 BBL ECD mutein for 4-1 BB, produces reduced (little or no) agonist activity at a 4-1 BB expressed at the surface of a cell, in the absence of the antigen or cells carrying the antigen.
- the 4-1 BBL ECD mutein in the conjugate shows significant agonist activity.
- a 4-1 BBL ECD mutein as described herein in a conjugate with an antigen-binding protein broadens the therapeutic window as compared to a corresponding conjugate comprising a wild type 4-1 BBL ECD.
- the term “therapeutic window” is herein understood as the ratio (or fold-difference) of the EC50 values obtained from a functional assay (e.g., a proliferation assay) comparing conditions in which cancer cells are absent to conditions in which they are present.
- a therapeutic window of 10 would mean that the EC50 without cancer cells was 10 times higher ( a less potent effect) as compared to when the cancer cells were present.
- the conjugate comprising the 4-1 BBL ECD mutein will have little or no effect on cells in the periphery, including T-, B- or NK cells, while remaining effective in stimulating these immune cells, in particular NK cells, at a tumor site or a site of infection or inflammation. This is because the target antigen bound by the antigen-binding protein is present at high local concentrations only in these specific areas, enabling the effect of avidity.
- an 4-1 BBL ECD mutein as described herein, wherein the 4-1 BBL ECD mutein, when present in a conjugate with an antigen binding protein that specifically binds an antigen, wherein the conjugate optionally further comprises IL-21 , has an EC50 in an NK cell proliferation assay in the presence of the antigen or cells expressing the antigen that is, with increasing preference, at least a factor 2, 5, 10, 20, 50, 100, 200, 500, 1 ,000, 2,000, 5,000, 10,000, 20,000, 50,000 or 100,000 lower than the EC50 in a corresponding NK cell proliferation assay in the absence of the antigen or cells expressing the antigen.
- the difference in induction of NK cell proliferation between the presence and absence of the antigen is determined using a reference multispecific antigen binding protein, such as AVC1 and reference tumor cells such as SK-OV-3 cells expressing HER2.
- the AVC1 multispecific antigen binding protein consists of a first trastuzumab heavy chain fused to the 4-1 BB ligand extracellular domain (SEQ ID NO: 1 1), a second trastuzumab heavy chain fused to wild type IL-21 (SEQ ID NO: 12) and trastuzumab light chains (SEQ ID NO: 2), wherein the constant regions of the first and second heavy chains are distinguished using knob-in-hole technology (see WO2024/056862).
- the wild type 4-1 BBL ECD amino acid sequence in the first heavy chain amino acid sequence of SEQ ID NO: 11 can be replaced by an amino acid sequence of an 4-1 BBL ECD mutein to be assayed, e.g. for its ability to induce NK cell proliferation in the presence and absence of tumor cells expressing HER2, such as the SK-OV-3 cells.
- an 4-1 BBL ECD mutein as described herein, wherein the 4-1 BBL ECD mutein, when present in a multispecific antigen binding protein consisting of i) a first heavy chain comprising the amino acid sequence of SEQ ID NO: 1 1 , wherein the wild type 4- 1 BBL ECD amino acid sequence is replaced by the amino acid sequence of the 4-1 BBL ECD mutein; ii) a second heavy chain comprising the amino acid sequence of SEQ ID NO: 12; and iii) light chains comprising the amino acid sequence of SEQ ID NO: 2, has an EC50 in an NK cell proliferation assay in the presence of SK-OV-3 cells that is, with increasing preference, at least a factor 10, 25, 50, 100, 200, 500, 1 ,000, 2,000, 5,000, 10,000, 20,000, 50,000 or 100,000 lower than the EC50 in a corresponding NK cell proliferation assay in the absence of the SK-OV-3 cells.
- an 4-1 BBL ECD mutein as described herein, wherein the 4-1 BBL ECD mutein, when present in a multispecific antigen binding proteins consisting of i) a first heavy chain comprising the amino acid sequence of SEQ ID NO: 1 1 , wherein the wild type 4- 1 BBL ECD amino acid sequence is replaced by the amino acid sequence of the 4-1 BBL ECD mutein; ii) a second heavy chain comprising the amino acid sequence of SEQ ID NO: 12; and iii) light chains comprising the amino acid sequence of SEQ ID NO: 2, produces a fold-difference in EC50 in an NK cell proliferation assay in the presence vs absence of SK-OV-3 cells that is, with increasing preference, at least a factor 2, 5, 10, 20, 50, 100, 200, 500, 1 ,000, 2,000 or 5,000 higher than the difference in EC50 in an NK cell proliferation assay in the presence vs absence of SK-OV- 3 cells as produced by a reference
- the NK cell proliferation assays are preferably performed using NK cells isolated from healthy donors.
- the EC50 values in the NK cell proliferation assays are preferably determined on the basis of the average values using NK cells isolated from at least 5 different healthy donors.
- the NK cell proliferation assays are preferably performed essentially as described in the examples herein.
- the reduced affinity of the 4-1 BBL ECD muteins described herein when present in a conjugate with an antigen binding protein increases the therapeutic window as compared to a corresponding conjugate comprising a wild type 4-1 BBL ECD, while at the same time the ability of a conjugate with an 4-1 BBL ECD mutein to induce NK cell cytotoxicity against cells carrying the antigen that is bound by the antigen binding protein, preferably remains essentially unaffected.
- an 4-1 BBL ECD mutein as described herein, wherein the 4-1 BBL ECD mutein, when present in a multispecific antigen binding protein consisting of i) a first heavy chain comprising the amino acid sequence of SEQ ID NO: 11 , wherein the wild type 4-1 BBL ECD amino acid sequence is replaced by the amino acid sequence of the 4-1 BBL ECD mutein; ii) a second heavy chain comprising the amino acid sequence of SEQ ID NO: 12; and iii) light chains comprising the amino acid sequence of SEQ ID NO: 2, has an EC50 in an NK cell cytotoxicity assay in the presence of SK-OV-3 cells that is, with increasing preference, at least equal to, or at Ieast 2-fold, at least 5-fold or at least 10-fold higherthan the EC50 of a reference multispecific antigen binding protein consisting of i) a first heavy chain comprising the amino acid sequence of SEQ ID NO: 11 ; ii) a second heavy
- the NK cell cytotoxicity assay in the presence of SK-OV-3 cells preferably performed using NK cells isolated from healthy donors.
- the EC50 values in the NK cell cytotoxicity assays are determined on the basis of the average values using NK cells isolated from at least 5 different healthy donors.
- the NK cell cytotoxicity assays are preferably performed essentially as described in the examples herein.
- the ability of a conjugate between an 4-1 BBL ECD mutein as described herein and an antigen binding protein to support long-term expansion of NK cells in the presence of cells carrying the antigen that is bound by the antigen binding protein preferably remains essentially unaffected.
- an 4-1 BBL ECD mutein as described herein, wherein the 4-1 BBL ECD mutein, when present in a multispecific antigen binding protein consisting of i) a first heavy chain comprising the amino acid sequence of SEQ ID NO: 11 , wherein the wild type 4-1 BBL ECD amino acid sequence is replaced by the amino acid sequence of the 4-1 BBL ECD mutein; ii) a second heavy chain comprising the amino acid sequence of SEQ ID NO: 12; and iii) light chains comprising the amino acid sequence of SEQ ID NO: 2, induces a fold expansion of NK cells in the presence of SK-OV-3 cells in an NK cell expansion assay, that is, with increasing preference, at least equal to, or at least 2-fold, at least 5-fold or at least 10-fold higher than the fold expansion induced by a reference multispecific antigen binding protein consisting of i) a first heavy chain comprising the amino acid sequence of SEQ ID NO: 11 ; ii)
- the NK cell expansion assay in the presence of SK-OV-3 cells preferably performed using NK cells isolated from healthy donors.
- the fold expansion of NK cells in the assays is determined on the basis of the average values using NK cells isolated from at least 5 different healthy donors.
- the NK cell expansion assays are preferably performed essentially as described in the examples herein.
- a further advantage of the 4-1 BBL ECD muteins as described herein is that their reduced affinity for 4-1 BB the improves pharmaco-kinetics of therapeutics comprising the 4-1 BBL ECD muteins.
- many cells, including T-, B- or NK cells, are present that express 4-1 BB molecules at their surfaces. These 4-1 BB molecules act as a sink for therapeutics comprising a moiety with affinity for 4-1 BB such as a 4-1 BBL ECD mutein.
- the therapeutic comprising the 4-1 BBL-moiety Upon binding to a surface expressed 4-1 BB, the therapeutic comprising the 4-1 BBL-moiety will be internalized and will therefore no longer be available for exerting its therapeutic effect, e.g. in the tumor microenvironment.
- the reduced affinity for 4-1 BB of the 4-1 BBL ECD muteins as described herein reduces or prevents their disappearance in this sink and thereby improves pharmaco-kinetics of therapeutics comprising the 4-1 BBL ECD muteins.
- the present disclosure provides a trimeric fusion protein comprising three 4-1 BBL ECD monomers, wherein one, two, or three of the monomers are a 4-1 BBL ECD mutein as described herein above, fused together in a single polypeptide chain, as e.g. described in Fellermeier et al. (2016, supra).
- the three 4-1 BBL ECD monomers are connected by polypeptide linkers.
- the three 4-1 BBL ECD monomers are connected by polypeptide linkers selected from the group consisting of (GGGGS)i, (GGGGS)2, (GGGGS) 3 , (GGGGS) 4 , (GGGGS) 5 , GGGSGGG, GGSGGGGSGG and G, of which (GGGGS) 4 is preferred.
- polypeptide linkers selected from the group consisting of (GGGGS)i, (GGGGS)2, (GGGGS) 3 , (GGGGS) 4 , (GGGGS) 5 , GGGSGGG, GGSGGGGSGG and G, of which (GGGGS) 4 is preferred.
- Other suitable flexible polypeptide linker(s) are described herein below.
- two or three of the 4-1 BBL ECD mutein monomers in the trimeric fusion protein are identical muteins.
- two or three monomers of the 4-1 BBL ECD mutein in the trimeric fusion protein are different muteins.
- the 4-1 BBL ECD monomer that is not a 4-1 BBL ECD mutein as described herein above can be a wild type 4-1 BBL ECD monomer, or a 4-1 BBL ECD mutein that is not described herein.
- the three monomers of the 4-1 BBL ECD mutein in the trimeric fusion protein are identical muteins. In one embodiment, at least two of the three monomers of the 4-1 BBL ECD mutein in the trimeric fusion protein are different muteins.
- a fusion protein comprising three monomers of a 4-1 BBL ECD mutein, preferably a 4-1 BBL ECD mutein as described herein, fused together in a single polypeptide chain comprise three identical monomers of the 4-1 BBL ECD mutein.
- at least one of the monomers differs from the other two, or all three monomers differ from each other.
- the present disclosure provides a conjugate comprising one or more of the 4-1 BBL ECD muteins as described herein conjugated to a heterologous moiety.
- a conjugate comprising a 4-1 BBL ECD mutein as described herein also includes a conjugate comprising a trimeric fusion protein comprising three 4-1 BBL ECD muteins as described herein.
- heterologous moiety is synonymous with the term “conjugate moiety” and refers to any molecule (chemical or biochemical, naturally-occurring or noncoded) which is different from the 4-1 BBL ECD muteins described herein.
- conjugate moieties that can be linked to any of the 4-1 BBL ECD muteins described herein include but are not limited to a heterologous peptide or polypeptide (including for example, an immunoglobulin or portion thereof (e.g., variable region, CDR, or Fc region)), a targeting agent, a diagnostic label such as a radioisotope, fluorophore or enzymatic label, a polymer including water soluble polymers, or other therapeutic or diagnostic agents.
- a conjugate is provided comprising a 4-1 BBL ECD mutein of the present disclosure and an immunoglobulin.
- the conjugate in some embodiments comprises one or more of the 4-1 BBL ECD muteins described herein and one or more of: a peptide or polypeptide (which is distinct from the 4-1 BBL ECD muteins described herein), a nucleic acid molecule, an antibody or fragment thereof, a polymer, a quantum dot, a small molecule, a toxin, a diagnostic agent, a carbohydrate, an amino acid.
- a peptide or polypeptide which is distinct from the 4-1 BBL ECD muteins described herein
- a nucleic acid molecule an antibody or fragment thereof
- a polymer a quantum dot
- a small molecule a small molecule
- a toxin a diagnostic agent
- a carbohydrate an amino acid
- a conjugate wherein the heterologous moiety is attached via non-covalent or covalent bonding to the 4-1 BBL ECD mutein as described herein.
- the linkage between the 4-1 BBL ECD mutein and the heterologous moiety is achieved via covalent chemical bonds, e.g., peptide bonds, disulfide bonds, and the like, or via physical forces, such as electrostatic, hydrogen, ionic, van der Waals, or hydrophobic or hydrophilic interactions.
- non-covalent coupling systems including, e.g., biotin-avidin, ligand/receptor, enzyme/substrate, nucleic acid/nucleic acid binding protein, lipid/lipid binding protein, cellular adhesion molecule partners; or any binding partners or fragments thereof which have affinity for each other.
- a conjugate wherein the 4-1 BBL ECD mutein as described herein is linked to a conjugate moiety via direct covalent linkage by reacting targeted amino acid residues of the 4-1 BBL ECD mutein with an organic derivatizing agent that is capable of reacting with selected side chains or the N- or C-terminal residues of these targeted amino acids.
- Reactive groups on the 4-1 BBL ECD mutein or conjugate moiety include, e.g., an aldehyde, amino, ester, thiol, a-haloacetyl, maleimido or hydrazino group.
- Derivatizing agents include, for example, maleimidobenzoyl sulfosuccinimide ester (conjugation through cysteine residues), N- hydroxysuccinimide (through lysine residues), glutaraldehyde, succinic anhydride or other agents known in the art.
- the conjugate moieties can be linked to the 4-1 BBL ECD mutein indirectly through intermediate carriers, such as polysaccharide or polypeptide carriers. Examples of polysaccharide carriers include aminodextran.
- suitable polypeptide carriers include polylysine, polyglutamic acid, polyaspartic acid, co-polymers thereof, and mixed polymers of these amino acids and others, e.g., serines, to confer desirable solubility properties on the resultant loaded carrier.
- Cysteinyl residues are most commonly reacted with a-haloacetates (and corresponding amines), such as chloroacetic acid, chloroacetamide to give carboxymethyl or carboxyamidomethyl derivatives. Cysteinyl residues also are derivatized by reaction with bromotrifluoroacetone, alphabromo- p-(5-imidozoyl)propionic acid, chloroacetyl phosphate, N-alkylmaleimides, 3-nitro-2-pyridyl disulfide, methyl 2-pyridyl disulfide, p-chloromercuribenzoate, 2-chloromercuri-4-nitrophenol, or chloro-7- nitrobenzo-2-oxa-l ,3-diazole.
- a-haloacetates and corresponding amines
- Cysteinyl residues also are derivatized by reaction with bromotrifluoroacetone, alphabromo- p-(5-
- Histidyl residues are derivatized by reaction with diethylpyrocarbonate at pH 5.5-7.0 because this agent is relatively specific for the histidyl side chain.
- Para-bromophenacyl bromide also is useful; the reaction is preferably performed in 0.1 M sodium cacodylate at pH 6.0.
- Lysinyl and amino-terminal residues are reacted with succinic or other carboxylic acid anhydrides. Derivatization with these agents has the effect of reversing the charge of the lysinyl residues.
- Other suitable reagents for derivatizing alpha-amino-containing residues include imidoesters such as methyl picolinimidate, pyridoxal phosphate, pyridoxal, chloroborohydride, trinitrobenzenesulfonic acid, O-methylisourea, 2,4-pentanedione, and transaminase-catalyzed reaction with glyoxylate.
- Arginyl residues are modified by reaction with one or several conventional reagents, among them phenylglyoxal, 2,3-butanedione, 1 ,2-cyclohexanedione, and ninhydrin. Derivatization of arginine residues requires that the reaction be performed in alkaline conditions because of the high pKa of the guanidine functional group. Furthermore, these reagents may react with the groups of lysine as well as the arginine epsilon-amino group.
- tyrosyl residues may be made, with particular interest in introducing spectral labels into tyrosyl residues by reaction with aromatic diazonium compounds or tetranitromethane.
- aromatic diazonium compounds or tetranitromethane Most commonly, N-acetylimidizole and tetranitromethane are used to form O- acetyl tyrosyl species and 3-nitro derivatives, respectively.
- aspartyl and glutamyl residues are converted to asparaginyl and glutaminyl residues by reaction with ammonium ions.
- sugar(s) may be attached to (a) arginine and histidine, (b) free carboxyl groups, (c) free sulfhydryl groups such as those of cysteine, (d) free hydroxyl groups such as those of serine, threonine, or hydroxyproline, (e) aromatic residues such as those of tyrosine, or tryptophan, or (f) the amide group of glutamine.
- the heterologous moiety is attached to the 4-1 BBL ECD mutein as described herein via a linker.
- the linker comprises a chain of atoms from 1 to about 60, or 1 to 30 atoms or longer, 2 to 5 atoms, 2 to 10 atoms, 5 to 10 atoms, or 10 to 20 atoms long.
- the chain atoms are all carbon atoms.
- the chain atoms in the backbone of the linker are selected from the group consisting of C, O, N, and S. Chain atoms and linkers may be selected according to their expected solubility (hydrophilicity) so as to provide a more soluble conjugate.
- the linker provides a functional group that is subject to cleavage by an enzyme or other catalyst or hydrolytic conditions found in the target tissue or organ or cell.
- the length of the linker is long enough to reduce the potential for steric hindrance. If the linker is a covalent bond or a peptidyl bond and the conjugate is a polypeptide, the entire conjugate can be a fusion protein.
- Such peptidyl linkers may be any length. Exemplary peptidyl linkers are from about 1 to 50 amino acids in length, 5 to 50, 3 to 5, 5 to 10, 5 to 15, or 10 to 30 amino acids in length, and are flexible or rigid. Flexible linkers are usually applied when the joined domains require a certain degree of movement or interaction.
- Preferred flexible linkers have sequences consisting primarily of stretches of Gly and Ser residues (“GS” linker).
- GS Gly and Ser residues
- An example of preferred (and widely used) flexible linker has the sequence of (GGGGS) n (SEQ ID NO: 30).
- the length of this GS linker can be optimized to achieve appropriate separation of the functional domains, or to maintain necessary inter-domain interactions.
- the copy number “n” of this GS linker can e.g. be 1 , 2, 3, 4, 5, 6, 7, 8, 9 or 10.
- Specific examples of GS linkers include (GGGGS)4 (SEQ ID NO: 31), GGGSGGG (SEQ ID NO: 32), GGSGGGGSGG (SEQ ID NO: 33) and G.
- GS linkers many other flexible linkers have been designed for recombinant fusion proteins.
- These flexible linkers are also rich in small or polar amino acids such as Gly and Ser, but can contain additional amino acids such as Thr and Ala to maintain flexibility, as well as polar amino acids such as Lys and Glu to improve solubility, such as e.g. the flexible linkers KESGSVSSEQLAQFRSLD (SEQ ID NO: 34) and EGKSSGSGSESKST (SEQ ID NO: 35), that have been applied for the construction of a bioactive scFvs.
- KESGSVSSEQLAQFRSLD SEQ ID NO: 34
- EGKSSGSGSESKST SEQ ID NO: 35
- the conjugate is a conjugate that has a 4-1 BBL ECD mutein-valency that is higher than one that is higher than one, which understood to mean that the conjugate comprises more than one, e.g. two, three, four or five 4-1 BBL ECD mutein-moieties.
- the conjugate comprises more than one, e.g. two, three, four or five 4-1 BBL ECD mutein-moieties.
- more than one 4-1 BBL ECD mutein-moieties are identical 4-1 BBL ECD mutein-moieties.
- the conjugate is a conjugate that has a valency of trimeric 4-1 BBL ECD mutein-fusion proteins that is higher than one that is higher than one, which understood to mean that the conjugate comprises more than one, e.g. two, three, four or five of such trimeric 4-1 BBL ECD mutein-fusion proteins.
- more than one trimeric 4-1 BBL ECD mutein-fusion proteins are identical trimeric fusion proteins.
- the heterologous moiety comprises a polypeptide.
- the polypeptide comprised in the heterologous moiety preferably is a polypeptide distinct from any of the 4-1 BBL ECD muteins described herein.
- the conjugate is a fusion polypeptide, fusion protein, a chimeric protein or chimeric polypeptide comprising a 4-1 BBL ECD mutein or a trimeric 4-1 BBL ECD mutein-fusion protein as described herein and an heterologous moiety comprises a polypeptide fused in a single polypeptide chain. Additional descriptions of such conjugates as fusion proteins are provided hereinbelow.
- the heterologous moiety comprises a polypeptide that is an antigen-binding protein or a polypeptide chain of an antigenbinding protein.
- the heterologous moiety comprises an antigen-binding protein or a polypeptide chain of an antigen-binding protein, which antigen-binding protein comprises at least one of: a) at least one of: i) a first antigen-binding region that specifically binds a tumor associated antigen (TAA), that specifically binds an NK cell activating receptor, and ii) a second antigen-binding region that specifically binds a TAA, that specifically binds an NK cell activating receptor; and, b) a third antigen-binding region that has or can have affinity for a surface antigen expressed on natural killer (NK) cells.
- TAA tumor associated antigen
- a second antigen-binding region that specifically binds a TAA, that specifically binds an NK cell activating receptor
- a third antigen-binding region that has or can have affinity for a surface antigen expressed on natural killer (NK) cells.
- An antigen-binding region as used in an antigen binding protein in a conjugate with a 4-1 BBL ECD mutein as described herein can be derived from any of a variety of immunoglobulin or nonimmunoglobulin scaffolds, for example affibodies based on the Z-domain of staphylococcal protein A, engineered Kunitz domains, monobodies or adnectins based on the 10th extracellular domain of human fibronectin III, anticalins derived from lipocalins, DARPins (designed ankyrin repeat domains), Affilins, multimerized LDLR-A module, avimers or cysteine-rich knottin peptides. See, e.g., Gebauer and Skerra (2009) Current Opinion in Chemical Biology 13:245-255, the disclosure of which is incorporated herein by reference.
- an antigen-binding region as used in an antigen binding protein in a conjugate with a 4-1 BBL ECD mutein as described herein comprises or consists of an immunoglobulin variable region.
- immunoglobulin variable regions can comprise or consist of variable domains that are commonly derived from antibodies (immunoglobulin chains), e.g. in the form of associated VL and VH domains found on two polypeptide chains, such as present in a Fab.
- immunoglobulin variable domains can comprise or consist of a single chain antigenbinding domain such as a scFv, a VH domain, a VL domain, or an immunoglobulin single variable domain (ISVD) such as a dAb, a V-NAR domain or a VHH domain.
- An immunoglobulin variable region to be used in an antigen binding protein in a conjugate with a 4-1 BBL ECD mutein as described herein can be a human or humanized immunoglobulin variable region or an immunoglobulin single variable domain as herein defined above.
- an antigen binding protein in a conjugate with a 4-1 BBL ECD mutein as described herein comprises at least one of i) a first antigen-binding region that specifically binds a TAA that is TROP2; and, ii) a second antigen-binding region that specifically binds TROP2 or another TAA.
- the antigen-binding region that binds a TAA is an antigenbinding region derived from immunoglobulin or non-immunoglobulin scaffolds as defined above.
- the antigen-binding region that specifically binds a TAA comprises or consists of at least one immunoglobulin variable domain.
- the antigen-binding region that specifically binds a TAA comprises or consists of a Fab that specifically binds a TAA or an immunoglobulin single variable domain (ISVD) that specifically binds a TAA.
- the antigen-binding region that specifically binds a TAA is an antigen-binding region that binds the TAA with a KD value of no more than 10 -3 M or 10 -4 M, as may be determined as herein described above.
- the antigen-binding region that specifically binds a TAA comprises or consists of a human or humanized immunoglobulin variable region or immunoglobulin single variable region as herein defined above.
- an antigen binding protein in a conjugate with a 4-1 BBL ECD mutein as described herein comprises two antigen-binding regions that specifically bind a TAA, i.e. a first and a second antigen-binding region.
- the two antigen-binding regions can bind one and the same TAA, they can bind at least two different TAAs, or they can bind at least two different epitopes on the same TAA.
- the two antigen-binding regions are identical.
- an antigen binding protein in a conjugate with a 4-1 BBL ECD mutein as described herein can be a homodimeric or a heterodimeric antigen binding protein.
- tumor-associated antigen refers to an antigen that is differentially expressed by cancer/tumor cells as compared to normal, i.e. non-tumoral cells.
- a TAA can be an antigen that is expressed by non-tumoral cells (e.g. immune cells) having a pro-tumoral effect (e.g. an immunosuppressive effect), and can thereby be exploited in order to target cancer cells.
- a TAA can thus be any antigen that potentially stimulates apparently tumor-specific immune responses.
- TAAs can be characterized as those which are normally silent (i.e., not expressed) in normal cells, those that are expressed only at certain stages of differentiation and those that are temporally expressed such as embryonic and fetal antigens.
- Other TAAs are encoded by mutant cellular genes, such as oncogenes (e.g., activated ras oncogene), suppressor genes (e.g., mutant p53), fusion proteins resulting from internal deletions or chromosomal translocations, including neo-antigens.
- Still other TAAs antigens can be encoded by viral genes such as those carried on RNA and DNA tumor viruses.
- TAAs can be expressed on immune cells capable of contributing to or mediating a pro-tumoral effect, e.g. cell that contributes to immune evasion, a monocyte or a macrophage, optionally a suppressor T cell, regulatory T cell, or myeloid-derived suppressor cell.
- immune cells capable of contributing to or mediating a pro-tumoral effect, e.g. cell that contributes to immune evasion, a monocyte or a macrophage, optionally a suppressor T cell, regulatory T cell, or myeloid-derived suppressor cell.
- the TAAs are usually normal cell surface antigens which are either overexpressed or expressed at abnormal times or are expressed by a targeted population of cells.
- the target TAA is expressed only on proliferative cells (e.g., tumor cells) or pro-tumoral cells (e.g. immune cells having an immunosuppressive effect), however this is rarely observed in practice.
- proliferative cells e.g., tumor cells
- pro-tumoral cells e.g. immune cells having an immunosuppressive effect
- an antigen binding protein in a conjugate with a 4-1 BBL ECD mutein as described herein comprises at least one antigen-binding region that specifically binds the TAA: TROP2.
- TROP2 is a transmembrane glycoprotein encoded by the human Tacstd2 gene.
- the 323 amino acid sequence of human TROP2 described in NCBI accession number NP_002344, the disclosure of which is incorporated herein by reference.
- the human TROP2 mRNA sequence is described in NCBI accession number NM_002353, the disclosure of which is incorporated herein by reference.
- TROP2 is an intracellular calcium signal transducer that is differentially expressed in many cancers. TROP2 plays a role in tumor progression by actively interacting with several key molecular signaling pathways traditionally associated with cancer development and progression. Aberrant overexpression of TROP2 has been described in several solid cancers.
- TROP2 causes cancer cell growth, proliferation, invasion, migration, and survival of cancer cells, which leads to TROP2 being associated with tumor aggressiveness and poor prognosis.
- an antigen binding protein in a conjugate with a 4-1 BBL ECD mutein as described herein comprises at least one antigen-binding region that specifically binds TROP2, which antigen-binding region comprises a combination of complementarity-determining regions (CDRs) CDR-H1 , CDR-H2, CDR-H3, CDR-L1 , CDR-L2 and CDR-L3 selected from the group consisting of: a) the CDR-H1 , CDR-H2 and CDR-H3 sequences as comprised in SEQ ID NO: 93, and the CDR-L1 , CDR-L2 and CDR-L3 sequences as comprised in SEQ ID NO: 94 (sacituzumab); b) the CDR-H1 , CDR-H2 and CDR-H3 sequences as comprised in SEQ ID NO: 338, and the CDR-L1 , CDR-L2 and CDR-L3 sequences as comprised in
- an antigen binding protein in a conjugate with a 4-1 BBL ECD mutein as described herein comprises at least one antigen-binding region that specifically binds TROP2, which antigen-binding region comprises a combination of complementarity-determining regions (CDRs) CDR-H1 , CDR-H2, CDR-H3, CDR-L1 , CDR-L2 and CDR-L3 selected from the group consisting of: a) a CDR-H1 comprising the sequence of SEQ ID NO: 552, a CDR-H2 comprising the sequence of SEQ ID NO: 553, a CDR-H3 comprising the sequence of SEQ ID NO: 554, a CDR-L1 comprising the sequence of SEQ ID NO: 555, a CDR-L2 comprising the sequence of SEQ ID NO: 556, and a CDR-L3 comprising the sequence of SEQ ID NO: 557 (sacituzumab); b) a CDR-H1 comprising the sequence of
- an antigen binding protein in a conjugate with a 4-1 BBL ECD mutein as described herein comprises at least one antigen-binding region that specifically binds TROP2, which antigen-binding region comprises a combination of variable heavy (VH) and variable light (VL) domains selected from the group consisting of: a) the VH sequence as comprised in SEQ ID NO: 138 and the VL sequence as comprised in SEQ ID NO: 139 (sacituzumab); b) the VH sequence as comprised in SEQ ID NO: 338, and the VL sequence as comprised in SEQ ID NO: 339 (datopotamab); c) the VH sequence as comprised in SEQ ID NO: 540, and the VL sequence as comprised in SEQ ID NO: 541 (AR46A6); d) the VH sequence as comprised in SEQ ID NO: 542, and the VL sequence as comprised in SEQ ID NO: 543 (KM4097); and, e) the group consisting
- an antigen binding protein in a conjugate with a 4-1 BBL ECD mutein as described herein comprises two antigen-binding regions that specifically bind a TAA, i.e. a first and a second antigen-binding region, wherein the first antigen-binding region first is an antigen-binding region that specifically binds TROP2 as herein defined above, and wherein a second antigenbinding region binds a TAA selected from the group consisting of: 5T4, ADAM9, ADAM10, ADAM12, AFP, ALK, ALPP, ALPP2, ALPPL2, AXL, Angiopoietin-2, Apelin receptor, B7-H3, B7-H4, B7-H6, B7.1 , B7.2, BCMA, BTLA, CA125, CAIX, CCR4, CCR6, CCR7, CD123, CD133, CD138, CD142, CD147, CD166, CD171 , CD19, CD2, CD20, CD205,
- an antigen binding protein in a conjugate with a 4-1 BBL ECD mutein as described herein can further comprise a third antigen-binding region, which is an antigen-binding region that has or can have affinity for a surface antigen expressed on NK cells.
- the third antigen-binding region that has or can have affinity for a surface antigen expressed on NK cells comprises or consists of an immunoglobulin Fc region, or at least a portion thereof that binds the type III Fey receptor (FcyRllla) as expressed on (human) NK cells, also referred to herein as CD16A.
- CD16A is an immunoglobulin gamma Fc region receptor (FcyRllla) that is expressed on NK cells and through which NK cells recognize IgG that is bound to the surface of a pathogen-infected or TAA-expressing target cell.
- CD16A polypeptide e.g., an CD16A polypeptide that is at least 90%, at least 95%, at least 98%, at least 99% or 100% identical to SEQ ID NO: 55, or a contiguous sequence of at least 20, at least 30, at least 50, at least 100 or at least 200 amino acid residues thereof.
- SEQ ID NO: 55 The 254 amino acid residue sequence of human CD16A is shown in SEQ ID NO: 55, which corresponds to UniProt accession no. P08637, the disclosure of which is incorporated herein by reference.
- the immunoglobulin Fc region at least comprises at least one of a CH2 and CH3 domain. In one embodiment, the immunoglobulin Fc region at least comprises at least one of a CH2 and CH3 domain and a hinge region. In one embodiment, the immunoglobulin Fc region comprises or consists of a hinge region and a CH2 and CH3 domain. In one embodiment, the immunoglobulin Fc region is a dimeric Fc region or at least a portion thereof that binds CD16A.
- an Fc region or portion thereof that binds CD16A be a wild-type region or portion thereof.
- an Fc region or portion thereof that binds CD16A can be modified to enhance or reduce its binding affinity to CD16A.
- CD16A binding is mediated by the hinge region and the CH2 domain.
- the interaction with CD16 is primarily focused on amino acid residues D265 - E269, N297 - T299, A327 - I332, L 234 - S239, and carbohydrate residue N-acetyl-D-glucosamine in the CH2 domain (see, Sondermann et al., 2000 Nature, 406(6793):267-273).
- mutations can be selected to enhance or reduce the binding affinity to CD16A, such as by using phage-displayed libraries or yeast surface-displayed cDNA libraries or can be designed based on the known three-dimensional structure of the interaction.
- the Fc region or portion is lgG2.
- an Fc region or portion thereof that binds CD16A can comprise a modification to increase affinity for CD16A.
- an Fc region or portion thereof that binds CD16A can comprise one or more amino acid modifications (e.g. amino acid substitutions, deletions, insertions) which increase binding to (human) CD16A and optionally another receptor such as FcRn.
- Typical modifications include modified human lgG1 -derived constant regions comprising at least one amino acid modification (e.g. substitution, deletions, insertions), and/or altered types of glycosylation, e.g., hypofucosylation.
- a modification can, for example, increase binding of an Fc region to FcyRllla (CD16A) on NK cells.
- FcyRllla CD16A
- modifications are provided in US 10,577,419, the disclosure of which is incorporated herein by reference.
- Specific mutations (in lgG1 Fc regions) which enhance FcyRllla (CD16A) binding, include E333A, S239D/I332E and S239D/A330L/I332E.
- the antigen binding protein in a conjugate with a 4-1 BBL ECD mutein as described herein comprises an Fc region or portion thereof that binds CD16A comprising at least one amino acid modification (for example, 1 , 2, 3, 4, 5, 6, 7, 8, 9, or more amino acid modifications) relative to a wild-type Fc region, such that the molecule has enhanced binding affinity for (human) CD16A relative to a molecule comprising a wild-type Fc region, optionally wherein the variant Fc region comprises a substitution at any one or more of positions 239, 298, 330, 332, 333 and/or 334 (e.g.
- variant Fc region comprises a substitution at residues S239 and I332, e.g. a S239D and I332E substitution (Kabat EU numbering).
- the antigen binding protein in a conjugate with a 4-1 BBL ECD mutein as described herein comprises an Fc region or portion thereof that binds CD16A comprising altered glycosylation patterns that increase binding affinity for (human) CD16A.
- carbohydrate modifications can be accomplished by, for example, by expressing a nucleic acid encoding the antigen binding protein in a host cell with altered glycosylation machinery.
- Cells with altered glycosylation machinery are known in the art and can be used as host cells in which to express recombinant antibodies to thereby produce an antibody with altered glycosylation. See, for example. Shields, R.L. et al. (2002) J. Biol. Chem.
- the antigen binding protein comprises one or more hypofucosylated constant regions.
- Such an antigen binding protein can comprise an amino acid alteration or cannot comprise an amino acid alteration and/or may be expressed or synthesized or treated under conditions that result in hypofucosylation.
- a composition comprising the antigen binding protein in a conjugate with a 4-1 BBL ECD mutein as described herein, at least 20, at least 30, at least 40, at least 50, at least 60, at least 75, at least 85, at least 90, at least 95% or substantially all of the antigen binding proteins have a constant region comprising a core carbohydrate structure (e.g. complex, hybrid and high mannose structures) which lacks fucose.
- a core carbohydrate structure e.g. complex, hybrid and high mannose structures
- an antigen binding protein which is free of N-linked glycans comprising a core carbohydrate structure having fucose.
- the core carbohydrate will preferably be a sugar chain at Asn297.
- the antigen binding protein in a conjugate with a 4-1 BBL ECD mutein as described herein comprises an Fc region or portion thereof that binds CD16A that is modified to have increased binding affinity for CD16A, has a binding affinity for human CD16A that is at least 1 , 2 or 3 log greater than that of a conventional or wild-type human IgG 1 antibody, e.g., as assessed by surface plasmon resonance.
- an Fc region or portion thereof that binds CD16A can comprise a modification to decrease affinity for CD16A.
- CH2 mutations in a dimeric Fc region protein at reside N297 can eliminate CD16A binding.
- Other modifications in the Fc region that reduce or eliminate binding to CD16A include the L234A/L235A modification (also known as “LALA”), the L235A/G237A modification (also known as “LAGA” and described in Liu et al., Antibodies. 2020;9(4):64; Szapacs et al., Bioanalysis.
- an antigen binding protein in a conjugate with an 4-1 BBL ECD mutein as described herein comprises an antigen-binding region that specifically binds an epitope of a y6 TCR, it is preferred that the antigen binding protein comprises an Fc region that is modified to reduce or eliminate binding to CD16A.
- Modification of the Fc region that reduce or eliminate its binding to CD16A can be useful to prevent or at least reduce the “sink effect”, wherein at least a fraction of the administered amount of multispecific antigen binding protein is lost by binding to NK cells or monocytes. Modification of the Fc region that reduce or eliminate its binding to CD16A can also be useful in an antigen binding protein to further attenuate apparent affinity to NK cells reducing activity in absence of target cells. Modification of the Fc region that reduce or eliminate its binding to CD16A can also be useful in an antigen binding protein to reduce or avoid NK cell fratricide. The lack of NK cell fratricide can be an advantageous feature for the antigen binding protein described herein.
- NK cell cross-linking with NK cells or other immune cells is expected to reduce therapeutic efficacy of NK cell-engagement.
- cross-linking of a NK cell with one or more NK cells or other immune cells through bivalent or multivalent interactions with FcRy or in combination with a second immune cell antigen (e.g. NKp46, NKG2D, NKp30, SLAMF7 or CD38) can cause immune cell activation. This might lead to induction of target cell-driven fratricide or immune cell killing (e.g.
- NK-NK cell lysis ultimately resulting in efficient NK cell depletion in vivo, as previously described for a CD16-directed murine IgG antibody (3G8), the CD38-directed antibody daratumumab and other approaches (Choi et al 2008 Immunology 124 (2) 215-22; DOI: 10.111 l/j.l365-2567.2007.02757.x; Yoshida 2010 Front. Microbiol 1 : 128 DOI: 10.3389/fmicb.2010.00128; Wang et al 2018 Clin Cancer Res, 24(16): 4006- 4017; DOI: 10.1158/1078-0432.
- the antigen binding protein in a conjugate with a 4-1 BBL ECD mutein as described herein comprises an Fc region or portion thereof that binds CD16A that is modified to have reduced binding affinity for CD16A, has a binding affinity for human CD16A that is at least 1 , 2 or 3 log less than that of a conventional or wild-type human lgG1 antibody, e.g., as assessed by surface plasmon resonance.
- the antigen binding protein in a conjugate with a 4-1 BBL ECD mutein as described herein comprises an Fc region that has an amino acid sequence having at least 85, at least 90, at least 91 , at least 92, at least 93, at least 94, at least 95, at least 96, at least 97, at least 98, at least 99 or 100% amino acid identity with an Fc region in at least one of SEQ ID NOs: 1 , 3, 5, 7, 9, 11 - 19 and 23, and preferably having one or more of the above structural and/or functional features.
- third antigen-binding region in an antigen binding protein in a conjugate with a 4-1 BBL ECD mutein as described herein, can be an antigen-binding region that specifically binds an NK cell activating receptor, such as described above for the second antigen-binding region. In one embodiment, at least one of the second or third antigen-binding region activates the NK cell activating receptor.
- an antigen binding protein in a conjugate with a 4-1 BBL ECD mutein as described herein comprises at least one further agonist, which further agonist can be at least one further NK cell-activating cytokine, in addition to the 4-1 BBL ECD mutein.
- the further agonist is the heterologous moiety.
- the further agonist is directly attached to the heterologous moiety, or the further agonist is attached to the heterologous moiety via a linker, preferably a (flexible) peptidyl linker as described above, e.g. (GGGGS) n , wherein the copy number “n” can be 1 , 2, 3, 4, 5, 6, 7, 8, 9 or 10.
- the further NK cell-activating cytokines can be selected from the group consisting of: an IL-21 receptor agonist, an IL-15 receptor agonist, an IL-2 receptor agonist, a type I interferon (IFN-1) receptor agonist, an IL-12 receptor agonist and an IL-18 receptor agonist, as further detailed below.
- the conjugate with a 4-1 BBL ECD mutein as described herein thus at least comprises an IL-21 receptor (IL-21 R) agonist.
- IL-21 R IL-21 receptor
- Interleukin 21 is a protein that in humans is encoded by the IL-21 gene (Entrez Gene ID: 59067). IL-21 is a cytokine that has potent regulatory effects on cells of the immune system, including natural killer (NK) cells, and which induces cell division/proliferation in its target cells.
- Amino acid sequences for human IL-21 precursor are described in NCBI accession numbers NP_001193935 and NP_068575, the disclosures of which are incorporated herein by reference.
- IL-21 (mature/processed) comprises amino acids 30 - 153 of NP_001193935 or amino acids 30 - 162 of NP_068575 (i.e. SEQ ID NO: 38).
- IL-21 exerts its effects on target cells through the IL-21 receptor (IL-21 R) is expressed on the surface of T, B and NK cells.
- IL-21 R is similar in structure to the receptors for other type I cytokines like IL-2R or IL-15 and requires dimerization with the common gamma chain (yc) in order to bind IL-21.
- IL-21 R is encoded in humans by the IL-21 R gene (Entrez Gene ID: 50615). Amino acid sequences for human IL-21 R are described in NCBI accession numbers NP_068570, NP_851564 and NP_851565, the disclosures of which are incorporated herein by reference.
- an “IL-21 R agonist” is an agent that has “agonist” activity at the IL-21 receptor, which means that the agent that can cause or increase "IL-21 R signaling".
- IL-21 R signaling refers to an ability of IL-21 R, e.g. when expressed on the surface of T, B and NK cells and triggered by its natural ligand IL-21 , to activate or transduce an intracellular signaling pathway.
- the “natural ligand IL-21 ” is herein understood as a human wild type IL-21 comprising or consisting of an amino acid sequence as indicated above.
- IL-21 R agonist activity i.e. changes in IL-21 R signaling activity
- assays designed to measure changes in the IL-21 R signaling pathways e.g.
- IL-21 R e.g. activation of specific cytolytic machinery in NK cells or y6 T cell.
- a suitable cell-based assay for biological activity of an IL-21 R agonist is e.g. described in Maurer et al. (mAbs.
- a murine pre-B-cell line is transfected with both the human IL-21 R and a STAT-responsive luciferase reporter gene.
- IL-21 R agonist activity can be determined using this cell line by measuring the level of STAT3 phosphorylation using anti-pSTAT3 antibody-conjugated beads and/or by detecting luciferase luminescence, upon contacting the cell line with an IL-21 R agonist.
- the natural ligand IL-21 can serve as a positive control in an assay for IL-21 R agonist activity and can also be used as a reference for the amount of IL-21 R agonist activity of a given non-natural IL-21 R agonist, such as a conjugate as described herein comprising an IL- 21 R agonist.
- a conjugate as described herein comprises an IL-21 R agonist that has reduced IL-21 R agonist activity as compared to human wild type IL-21 .
- the IL- 21 R agonist has an IL-21 R agonist activity that is a factor 2, 5, 10, 20, 50, 100, 200, 500, 1000, 10000, or 100000 less than that of human wild type IL-21 .
- a conjugate as described herein comprises an IL-21 R agonist that has enhanced IL-21 R agonist activity as compared to human wild type IL-21.
- the IL-21 R agonist has an IL-21 R agonist activity that is a factor 2, 5, 10, 20, 50, 100, 200, 500, 1000, 10000, or 100000 higher than that of human wild type IL-21 .
- a conjugate as described herein comprises an IL-21 R agonist that is an IL-21 polypeptide comprising an amino acid sequence with at least 50, at least 55, at least 60, at least 65, at least 70, at least 75, at least 80, at least 85, at least 90, at least 95, at least 96, at least 97, at least 98, at least 99, or 100% sequence identity to SEQ ID NO: 38, and preferably having an IL-21 R agonist activity as defined above, and/or preferably having an affinity for the IL-21 R as defined below.
- a conjugate as described herein comprises an IL-21 R agonist of which the affinity for the IL-21 R is reduced or enhanced as compared to human wild type IL-21 .
- the affinity of an IL-21 R agonist of the affinity for the IL-21 R can be assayed using methods generally known in the art, such as surface plasmon resonance.
- a conjugate as described herein comprises an IL-21 R agonist that has reduced affinity for IL-21 R as compared to human wild type IL-21 .
- the affinity of the IL-21 R agonist for IL-21 R is a factor 2, 5, 10, 20, 50, 100, 200, 500 or 1000 less than that of human wild type IL-21 .
- a conjugate as described herein comprises an IL-21 R agonist that has enhanced affinity for IL-21 R as compared to human wild type IL-21 .
- the affinity of the IL-21 R agonist for IL-21 R is a factor 2, 5, 10, 20, 50, 100, 200, 500 or 1000 higher than that of human wild type IL-21 .
- a conjugate as described herein comprises an IL-21 R agonist that is IL-
- the IL-21 R agonist is human IL-21 or a fragment thereof that has IL-21 R agonist activity.
- the IL-21 R agonist is an IL-21 mutein with reduced affinity for IL-21 R as compared to human wild type IL-21.
- IL-21 muteins with reduced affinity for IL-21 R as compared to human wild type IL-21 are described in one of Shen et al. (Front Immunol. 2020; 11 : 832), WO2019/028316, W02006/1 11524, W02008/049920 and the co-pending application by the same applicant with reference no. P62009936EP.
- the IL-21 R agonist is an IL-21 mutein with a mutation (i.e. amino acid substitution, deletion or insertion) of one or more amino acids selected from the group consisting of D4, R5, I8, R9, R1 1 , Q12, L13, 114, D15, 116, D18 Q19, L20, K21 , Y23, R65, I66, I67, N68, V69, S70, K72, K73, L74, K75, R76, K77, P78, P79, S80, E100, E109, R1 10, K112, S113, Q116, K117, 1119, H120, and L123 (amino acid positions referring to position in SEQ ID NO: 38 or a corresponding position in an IL-21 allelic variant).
- a mutation i.e. amino acid substitution, deletion or insertion
- the IL-21 R agonist is an IL-21 mutein comprising at least one amino acid substitution, deletion or insertion selected from the group consisting of: (N82- A83- G84- R85- R86- Q87- K88-), L20W, L74D, L20N, I67N, L20S, L13E, I8H, (N63-, E64-, R65- and I66-), L74F, I8V, I8Q, I8F, I8W, I8Y, I8L, D4H, D4R, D4K, D4Q, D4N, R11 E, R11 Q, R11 N, R11Y, Q12K, Q12R, L13S, L13V, L13T, L13G, Q19S, Q19E, Q19K, Q19R, Q19H, Q19G, Q19T, L20D, L20E, L20R, L20K, L20Q, L20H, L20G, K21 H
- the IL-21 mutein comprises no other amino acid sequence modification than the at least one amino acid substitution, deletion or insertion selected from the group consisting of: (N82- A83- G84- R85- R86- Q87- K88-), L20W, L74D, L20N, I67N, L20S, L13E, I8H, (N63-, E64-, R65- and I66-), L74F, I8V, I8Q, I8F, I8W, I8Y, I8L, D4H, D4R, D4K, D4Q, D4N, R11 E, R11 Q, R11 N, R11Y, Q12K, Q12R, L13S, L13V, L13T, L13G, Q19S, Q19E, Q19K, Q19R, Q19H, Q19G, Q19T, L20D, L20E, L20R, L20K, L20Q, L20H, L20G, K21 H,
- the IL-21 R agonist is an IL-21 mutein with a deletion of at least one, two, three, four, five, six, seven or eight amino acids in the region of N59 to I66, or with a deletion of at least one, two, three, four, five, six, seven or eight amino acids in the region of N82 to R90.
- the IL-21 mutein comprises an insertion of, with increasing preference, at least one, two, three or four glycine(s) immediately C-terminal to G84.
- the IL-21 R agonist is an IL-21 mutein comprising at least one amino acid substitution, deletion or insertion selected from the substitutions, deletions and insertions listed in Table C.
- the IL-21 mutein binds to a human IL-21 receptor with a reduced affinity, relative to the affinity of wild-type IL-21 for the human IL-21 receptor, wherein preferably the IL-21 mutein binds with reduced affinity to a human IL-21 receptor having an amino acid sequence of SEQ ID NO: 173 or the IL-21 mutein binds with reduced affinity to an IL-21 receptor gamma chain having an amino acid sequence of SEQ ID NO: 174.
- the IL-21 mutein comprises at least one amino acid substitution or deletion selected from the group consisting of: (N82- A83- G84- R85- R86- Q87- K88-); L20W; L74D; L20N; I67N; L20S; L13E; I8H; (N63- E64- R65- I66-); and L74F.
- the IL-21 mutein comprises no other modification than the at least one amino acid substitution or deletion selected from the group consisting of: (N82- A83- G84- R85- R86- Q87- K88-), L20W; L74D; L20N; I67N; L20S; L13E; I8H; (N63- E64- R65- I66-); and L74F.
- an IL-21 mutein provided herein exhibits a binding affinity for the human IL-21 R, expressed as pKo, that is at least 0.5 lower than the pKo of wild-type IL-21 for the IL-21 R.
- the IL-21 mutein having at least a 0.5 lower pKo for the human IL-21 R relative to the pKo of wild-type IL-21 for the IL-21 R is an IL-21 mutein comprising at least one amino acid substitution or deletion selected from the group consisting of: (N82- A83- G84- R85- R86- Q87- K88-); L20W; R5H; I8V; I8Q; Q12K; K73Y; L13E; D4H; I8H; I67N; L74D; L20S; and L20N.
- the IL-21 mutein comprises no other amino acid sequence modification than the at least one amino acid substitution or deletion selected from the group consisting of: (N82- A83- G84- R85- R86- Q87- K88-); L20W; R5H; I8V; I8Q; Q12K; K73Y; L13E; D4H; I8H; I67N; L74D; L20S; and L20N.
- an IL-21 mutein provided herein exhibits a binding affinity for the human IL-21 R, expressed as pKo, that is at least 1.0 lower than the pKo of wild-type IL-21 for the IL-21 R,
- the IL-21 mutein having at least a 1 .0 lower pKo for the human IL-21 R relative to the pKo of wild-type IL-21 for the IL-21 R is an IL-21 mutein comprising at least one amino acid substitution or deletion selected from the group consisting of: (N82- A83- G84- R85- R86- Q87- K88-); L20W; R5H; I8Q; Q12K; K73Y; L13E; I67N; L74D; L20S; and L20N.
- the IL-21 mutein comprises no other amino acid sequence modification than the at least one amino acid substitution or deletion selected from the group consisting of: (N82- A83- G84- R85- R86- Q87- K88-); L20W; R5H; I8Q; Q12K; K73Y; L13E; I67N; L74D; L20S; and L20N.
- an IL-21 mutein provided herein exhibits a binding affinity for the human IL-21 R, expressed as pKo, that is at least 1.6 lower than the pKo of wild-type IL-21 for the IL-21 R,
- the IL-21 mutein having at least a 1 .6 lower pKo for the human IL-21 R relative to the pKo of wild-type IL-21 for the IL-21 R is an IL-21 mutein comprising at least one amino acid substitution or deletion selected from the group consisting of: (N82- A83- G84- R85- R86- Q87- K88-); L20W; R5H; Q12K; I67N; L74D; L20S; and L20N.
- the IL-21 mutein comprises no other amino acid sequence modification than the at least one amino acid substitution or deletion selected from the group consisting of: (N82- A83- G84- R85- R86- Q87- K88-); L20W; R5H; Q12K; I67N; L74D; L20S; and L20N.
- an antigen binding protein in a conjugate as described herein comprising a combination of a 4-1 BBL ECD mutein as described herein and an IL-21 mutein as described herein, as shown in Table D.
- Table D Combinations of 4-1 BBL muteins and IL-21 muteins conjugated to an antigen binding protein.
- a conjugate as described herein comprises a combination of a 4-1 BBL ECD mutein and an IL-21 mutein
- the 4-1 BBL ECD mutein is selected from the group consisting of: 4-1 BBL mutein A154D; 4-1 BBL mutein A154E; 4-1 BBL mutein V153Q; 4-1 BBL mutein Q227E; 4-1 BBL mutein Q227R; 4-1 BBL mutein L101 N; 4-1 BBL mutein Y110Q; 4-1 BBL mutein Q230K; and 4-1 BBL mutein V100Q
- the IL-21 mutein is selected from the group consisting of: IL-21 mutein (N82- A83- G84- R85- R86- Q87- K88-); IL-21 mutein L20W; IL-21 mutein L74D; IL-21 mutein L20N; IL-21 mutein I67N; IL-21 mutein
- the 4-1 BBL and IL-21 mutein are hereby understood to at least comprise the indicated substitution or deletion, or to comprise no other amino acid sequence modification than the indicated substitution or deletion.
- the 4-1 BBL ECD mutein and the IL-21 mutein are each conjugated to an antigen binding protein, whereby preferably, the 4-1 BBL ECD mutein is present as a hetero- or homotrimer of 4-1 BBL ECDs connected through polypeptide linkers.
- the conjugate comprises a combination of a 4-1 BBL ECD mutein and an IL-21 mutein selected from the group consisting of: 4-1 BBL mutein A154D and IL-21 mutein (N82- A83- G84- R85- R86- Q87- K88-); 4-1 BBL mutein A154D and IL-21 mutein L20W; 4-1 BBL mutein A154D and IL-21 mutein L74D; 4-1 BBL mutein A154D and IL-21 mutein L20N; 4-1 BBL mutein A154D and IL-21 mutein I67N; 4-1 BBL mutein A154D and IL-21 mutein L20S; 4-1 BBL mutein A154D and IL-21 mutein L13E; 4-1 BBL mutein A154D and IL-21 mutein I8H; 4-1 BBL mutein A154D and IL-21 mutein (N63- E64- R65- I66
- a conjugate comprising a combination of a 4-1 BBL ECD mutein and an IL-21 mutein is a conjugate, which when consisting of trastuzumab to which the IL-21 mutein and the 4-1 BBL ECD mutein are conjugated, whereby the 4-1 BBL ECD mutein is present as a homotrimer wherein the ECD monomers are connected through (GGGGS)4-linkers, induces a maximal proliferation of NK cells at a saturating concentration of 25 nM of the conjugate in a normalized 5-day NK cell proliferation assay in the presence of SKOV3 tumor cells, which proliferation is at least 60% of the proliferation induced by a corresponding control conjugate comprising wild-type IL-21 and wild type 4-1 BBL in the same assay.
- the conjugate comprises a combination of a 4-1 BBL ECD mutein and an IL-21 mutein selected from the group consisting of: 4-1 BBL mutein A154D and IL-21 mutein (N82- A83- G84- R85- R86- Q87- K88-); 4-1 BBL mutein A154D and IL-21 mutein L20W; 4-1 BBL mutein A154D and IL-21 mutein L20S; 4-1 BBL mutein A154E and IL-21 mutein (N82- A83- G84- R85- R86- Q87- K88-); 4-1 BBL mutein A154E and IL-21 mutein L20W; and 4-1 BBL mutein A154E and IL-21 mutein L20S.
- 4-1 BBL ECD mutein and an IL-21 mutein selected from the group consisting of: 4-1 BBL mutein A154D and IL-21 mutein (N82- A83- G84-
- a conjugate comprising a combination of a 4-1 BBL ECD mutein and an IL-21 mutein is a conjugate, which when consisting of trastuzumab to which the IL-21 mutein and the 4-1 BBL ECD mutein are conjugated, whereby the 4-1 BBL ECD mutein is present as a homotrimer wherein the ECD monomers are connected through (GGGGS)4-linkers, induces a maximal proliferation of NK cells at a saturating concentration of 25 nM of the conjugate in a normalized 5-day NK cell proliferation assay in the presence of SKOV3 tumor cells, which proliferation is at least 89% of the proliferation induced by a corresponding control conjugate comprising wild-type IL-21 and wild type 4-1 BBL in the same assay.
- the conjugate comprises a combination of a 4-1 BBL ECD mutein and an IL-21 mutein selected from the group consisting of: 4-1 BBL mutein A154D and IL-21 mutein (N82- A83- G84- R85- R86- Q87- K88-); 4-1 BBL mutein A154D and IL-21 mutein L20W; 4-1 BBL mutein A154E and IL-21 mutein (N82- A83- G84- R85- R86- Q87- K88-); and 4-1 BBL mutein A154E and IL-21 mutein L20W.
- a conjugate comprising a combination of a 4-1 BBL ECD mutein and an IL-21 mutein is a conjugate, which when consisting of trastuzumab to which the IL-21 mutein and the 4-1 BBL ECD mutein are conjugated, whereby the 4-1 BBL ECD mutein is present as a homotrimer wherein the ECD monomers are connected through (GGGGS)4-linkers, induces a maximal proliferation of NK cells at a saturating concentration of 25 nM of the conjugate in a normalized 5-day NK cell proliferation assay in the presence of SKOV3 tumor cells, which proliferation is at least 105% of the proliferation induced by a corresponding control conjugate comprising wild-type IL-21 and wild type 4-1 BBL in the same assay.
- the conjugate comprises a combination of: 4-1 BBL mutein A154D and IL-21 mutein (N82- A83- G84- R85- R86
- a conjugate as described herein comprises an IL-21 R agonist that is an antigen-binding region that specifically binds IL-21 R and that has IL-21 R agonist activity.
- the antigen-binding region can be an antigen-binding region as described herein above.
- a conjugate as described herein comprises more than one IL-21 R agonist as described above.
- the conjugate has an IL-21 R agonistvalency that is higher than one.
- the IL-21 R agonist-valency of a conjugate can for example be 2, 3, 4, 5, 6, 7, 8, 9, 10, 11 , 12, 13, 14, 15 or more.
- the at least one of the first and second antigen-binding regions (that specifically bind a TAA, or an NK cell activating receptor) is conjugated to the third antigen-binding region that has or can have affinity for a surface antigen expressed on NK cells.
- the at least one of the first and second antigen-binding regions that specifically binds a TAA, or an NK cell activating receptor is conjugated to at least one polypeptide chain of the third antigen-binding region.
- the conjugation of the two domains/regions is understood to mean that they are covalently linked to each other.
- the two domains/regions can be chemically cross-linked to each other, using a cross-linker for linking two proteinaceous molecules, as are well-known in the art.
- a cross-linker for linking two proteinaceous molecules
- the cross-linker comprises a flexible spacer, to provide flexibility or freedom of motion of the two regions with respect to each other.
- the at least one of the first and second antigen-binding regions is conjugated to the third antigen-binding region by being comprised in a single polypeptide chain.
- an antigen-binding region can comprise two polypeptide chains, such as a VH and a VL chain, in one embodiment, at least one polypeptide chain in an antigen-binding region that specifically binds a TAA, or an NK cell activating receptor forms a single polypeptide chain with at least one polypeptide chain of the second antigen-binding region.
- the third antigen-binding region that has or can have affinity for a surface antigen expressed on NK cells can comprise two polypeptide chains, such as a dimeric Fc region of an antibody, in one embodiment, at least one polypeptide chain of the third antigen-binding region forms a single polypeptide chain with the at least one polypeptide chain in at least one of the first and second antigen-binding region.
- a conjugate comprising a 4-1 BBL ECD mutein and an antigen binding protein as described herein comprises a single polypeptide chain that comprises in an N- to C-terminal order: i) at least one polypeptide chain in the at least one of the first and second antigen-binding region; ii) optionally a flexible linker; and iii) (at least one polypeptide chain of) the third antigen-binding region.
- the flexible linker can be an immunoglobulin hinge region or can be linker as described herein below.
- the third antigen-binding region i.e. the domain that has or can have affinity for a surface antigen expressed on NK cells
- the dimeric immunoglobulin Fc region preferably is a dimer of an Fc region as herein described above.
- the immunoglobulin variable region can be an scFv, a VH domain, a VL domain, or an immunoglobulin single variable domain (ISVD) such as a dAb, a V-NAR domain or a VHH domain.
- the immunoglobulin variable region that is linked to the CH1 domain is a VH domain that is paired with a VL domain linked to a CK or CA domain.
- the VH and VL domains together specifically bind the TAA or the NK cell activating receptor.
- the two immunoglobulin variable regions bind the same TAA. In another embodiment, the two immunoglobulin variable regions each bind a different TAA. In one embodiment, the first immunoglobulin variable region binds a TAA and the second immunoglobulin variable region binds an NK cell activating receptor. In one embodiment, the first and the second immunoglobulin variable regions both bind an NK cell activating receptor. The two immunoglobulin variable regions can each bind a different NK cell activating receptor or they can both bind the same NK cell activating receptor.
- a conjugate comprising a 4-1 BBL ECD mutein and an antigen binding protein as described herein can thus be homodimeric, with two identical immunoglobulin variable regions that both bind the same TAA.
- a conjugate comprising a 4-1 BBL ECD mutein and an antigen binding protein as described herein can thus be heterodimeric with respect to the specificity for TAAs and/or NK cell activating receptor , wherein each of the two immunoglobulin variable regions each bind a different TAA, or a TAA and an NK cell activating receptor.
- one of the two immunoglobulin variable regions is an immunoglobulin single variable domain, while the other immunoglobulin variable region is not.
- the assembly of heterodimeric antibody heavy chains can be accomplished by expressing two different antibody heavy chain sequences in the same cell, which may lead the assembly of homodimers of each antibody heavy chain as well as assembly of heterodimers.
- Promoting the preferential assembly of heterodimers can be accomplished by incorporating different mutations in the CH3 domain of each antibody heavy chain constant region as shown in US13/494,870, US16/028850, US11/533,709, US12/875,015, US13/289,934, US14/773,418, US12/81 1 ,207, US13/866,756, US14/647,480, US 14/830,336 and WO2019/195409.
- mutations can be made in the CH3 domain based on human Ig G 1 and incorporating distinct pairs of amino acid substitutions within a first polypeptide and a second polypeptide that allow these two chains to selectively heterodimerize with each other.
- CH3 domains which comprise amino acid substitutions, wherein the CH3 domain interface of the antibody Fc region is mutated to create altered charge polarity across the Fc dimer interface such that co-expression of electrostatically matched Fc chains supports favorable attractive interactions thereby promoting desired Fc heterodimer formation, whereas unfavorable repulsive charge interactions suppress unwanted Fc homodimer formation.
- a “knob-into-holes” approach is used in which the CH3 domain interface of the antibody Fc region is mutated so that the antibodies preferentially form heterodimers (further including the attached light chains).
- one heavy chain comprises a T366W substitution and the second heavy chain comprises a T366S, L368A and Y407V substitution, see, e.g. Ridgway et al (1996) Protein Eng., 9, pp. 617-621 ; Atwell (1997) J. Mol. Biol., 270, pp. 26-35; and W02009/089004, the disclosures of which are incorporated herein by reference.
- one heavy chain comprises a F405L substitution
- the second heavy chain comprises a K409R substitution
- one heavy chain comprises T350V, L351Y, F405A, and Y407V substitutions
- the second heavy chain comprises T350V, T366S, K392L, and T394W substitutions, see, e.g. Von Kreudenstein et al., (2013) mAbs 5:646-654.
- one heavy chain comprises both K409D and K392D substitutions and the second heavy chain comprises both D399K and E356K substitutions, see, e.g. Gunasekaran et al., (2010) J. Biol. Chem. 285:19637-19646.
- one heavy chain comprises D221 E, P228E and L368E substitutions and the second heavy chain comprises D221 R, P228R, and K409R substitutions, see, e.g. Strop et al., (2012) J. Mol. Biol. 420: 204-219.
- one heavy chain comprises S364H and F405A substitutions and the second heavy chain comprises Y349Tand, T394F substitutions, see, e.g. Moore et al., (2011) mAbs 3: 546-557.
- one heavy chain comprises a H435R substitution, and the second heavy chain optionally may or may not comprise a substitution, see, e.g. US Patent no. 8,586,713.
- the Fc regions of these antibodies can be engineered to contain amino acid modifications that permit CD16 binding or that avoid CD16 binding.
- the antibody may comprise mammalian antibody-type N-linked glycosylation at residue N297 (Kabat EU numbering).
- a conjugate comprising a 4-1 BBL ECD mutein and an antigen binding protein as described herein comprises a dimeric immunoglobulin Fc region that is a (homo or hetero) dimer of at least one Fc region as herein described above, wherein each of the two Fc polypeptide chains is operably linked to a Fab that specifically binds a TAA, or an NK cell activating receptor.
- the antigen binding protein in a conjugate comprising such a dimeric Fc linked to two Fabs can thus form an immunoglobulin structure, such as a conventional IgG immunoglobulin.
- a conjugate comprising a 4-1 BBL ECD mutein and an antigen binding protein as described herein
- at least one of the 4-1 BBL ECD mutein and the further agonists is conjugated to the at least one of the first and second antigen-binding region that specifically binds a TAA, or an NK cell activating receptor, or to the third antigen-binding region.
- conjugation of two proteinaceous entities is understood to mean that they are covalently linked to each other, which can be done by chemical cross-linking, using cross-linkers for linking two proteinaceous molecules, as are well-known in the art, which cross-linker can comprise a flexible spacer.
- the at least one of the 4-1 BBL ECD mutein and the further agonist forms a single polypeptide chain with at least one of: i) at least one polypeptide chain in the at least one of the first and a second antigen-binding regions that specifically binds a TAA, or NK cell-activating receptor; and, ii) (at least one polypeptide chain in) the second antigen-binding region that has or can have affinity for a surface antigen expressed on NK cells.
- a flexible linker (as described below) is present between the agonist and the region defined in i) or ii).
- the at least one of the 4-1 BBL ECD mutein and the further agonist forms a single polypeptide chain with at least one of: i) a light chain in at least one of the two Fabs that specifically bind a TAA, or an NK cell activating receptor; and, ii) at least one of the two Fc chains in the dimeric immunoglobulin Fc region.
- a flexible linker (as described below) is present between the at least one of the 4-1 BBL ECD mutein and the further agonist and the light chain defined in i) or the Fc chain defined in ii).
- a conjugate comprising antigen binding protein as described herein is heterodimeric with respect to at least one of: i) the first and second antigen-binding regions; and ii) at least one of the fused 4-1 BBL ECD mutein and the fused further agonist, and the dimeric Fc region comprises different first and a second polypeptide chains comprising knob-into-hole modifications promoting association of the first and the second polypeptide chains of the Fc region.
- the conjugate comprises a TROP2 targeting antigen-binding protein comprising: a) a first heavy chain comprising an amino acid sequence with at least 95, 96, 97, 98, 99 or 100% sequence identity to any one of SEQ ID NO.’s: 585, 591 and 588; b) a second heavy chain comprising an amino acid sequence with at least 95, 96, 97, 98, 99 or 100% sequence identity to any one of SEQ ID NO.’s: 586, 674, 592 and 589; and c) a light chain comprising an amino acid sequence with at least 95, 96, 97, 98, 99 or 100% sequence identity to any one of SEQ ID NO.’s: 584, 593 and 590.
- a TROP2 targeting antigen-binding protein comprising: a) a first heavy chain comprising an amino acid sequence with at least 95, 96, 97, 98, 99 or 100% sequence identity to any one of SEQ ID NO.’s: 585, 591 and 588
- the conjugate comprises: a) a first heavy chain comprising an amino acid sequence with at least 95, 96, 97, 98, 99 or 100% sequence identity to SEQ ID NO: 585; b) a second heavy chain comprising an amino acid sequence with at least 95, 96, 97, 98, 99 or 100% sequence identity to SEQ ID NO.’s: 586 or 674; and c) a light chain comprising an amino acid sequence with at least 95, 96, 97, 98, 99 or 100% sequence identity to SEQ ID NO: 584.
- the conjugate comprises: a) a first heavy chain comprising an amino acid sequence with at least 95, 96, 97, 98, 99 or 100% sequence identity to SEQ ID NO: 585; b) a second heavy chain comprising an amino acid sequence with at least 95, 96, 97, 98, 99 or 100% sequence identity to SEQ ID NO.’s: 586; and c) a light chain comprising an amino acid sequence with at least 95, 96, 97, 98, 99 or 100% sequence identity to SEQ ID NO: 584.
- a conjugate comprising a 4-1 BBL ECD mutein or an antigen binding protein as described herein can have a one or more biological activities, including e.g. antigen (TAA, preferably TROP2) binding, binding to an NK cell, the ability to direct an NK cell to a target cell expressing the TAA, activating an NK cell, including inducing hyper-functionality of the NK cell, and/or the ability to elicit lysis of target cell by the (activated/hyper-functional) NK cell.
- TAA antigen
- TROP2 TROP2
- a conjugate comprising a 4-1 BBL ECD mutein or an antigen binding protein as described herein causes an increase in at least one NK cell activity selected from CD107a degranulation, CD69 expression, IFNy production, NK cell proliferation and NK cell cytotoxicity, whereby preferably, the increase is at least a factor 1 .0, 1 .1 , 1 .2, 1 .5, 2.0, 5.0, 10, 20 50 100, 110, 120, 150, 200, 210, 220, 250 or 300 higher as compared to the increase achieved with the same effector : target cell ratio, with the same NK cells and target cells that are not brought into contact with the conjugate comprising a 4-1 BBL ECD mutein or the antigen binding protein.
- a conjugate comprising a 4-1 BBL ECD mutein or an antigen binding protein as described herein cause an increase in at least one NK cell activity selected from CD107a degranulation, CD69 expression, IFNy production, NK cell proliferation and NK cell cytotoxicity, whereby preferably, the increase is at least a factor 1 .0, 1 .1 , 1 .2, 1 .5, 2.0, 5.0, 10, 20, 50, 100, 110, 120, 150, 200, 210, 220, 250 or 300 higher as compared to the increase achieved with the same effector : target cell ratio, with the same NK cells and target cells that are brought into contact (under otherwise identical conditions) with a reference antigen binding protein.
- the reference antigen binding protein is a conventional human lgG1 monoclonal antibody that binds to the same TAA, preferably, that binds to the same epitope, more preferably that has same TAA-specific antigen-binding region(s) as the conjugate comprising a 4- 1 BBL ECD mutein and an antigen binding protein.
- a conjugate comprising a 4-1 BBL ECD mutein and an antigen binding protein having a TROP2-binding region is superior in causing an increase in NK cell activities.
- the reference antigen binding protein is a (multispecific) antigen binding protein comprising at least one antigen-binding region that binds to the same TAA, preferably, that binds to the same epitope, more preferably that has same TAA-specific antigen-binding region(s) as the conjugate comprising a 4-1 BBL ECD mutein or the antigen binding protein, and comprising at least one antigen-binding region that specifically binds an NK cell activating receptor such as NKp46, NKp44, NKp30, NKG2D, DNAM1 and CD16A.
- an NK cell activating receptor such as NKp46, NKp44, NKp30, NKG2D, DNAM1 and CD16A.
- the reference antigen binding protein is a (multispecific) antigen binding protein comprising at least one antigen-binding region that binds to the same TAA, preferably, that binds to the same epitope, more preferably that has same TAA-specific antigen-binding region(s) as the conjugate comprising a 4-1 BBL ECD mutein or the antigen binding protein, and comprising at least one NK cell-activating cytokine other than a 4-1 BBL ECD mutein.
- the NK cell-activating cytokine other than a 4-1 BBL ECD mutein can be an NK cell activating cytokine is selected from the group consisting of an IL-21 R agonist, an IL- 15 receptor agonist, a type I interferon (IFN-1) agonist, an IL-2 receptor agonist, an IL-12 receptor agonist and an IL-18 receptor agonist, as described above.
- an IL21 mutein as described above, or an IL-15 receptor agonist such as IL15, a human modified IL-15 cross-linker as described in US2018282386 and Vallera et al. (2016, Clin Cancer Res.; 22(14): 3440-3450).
- the reference antigen binding protein is an NK cell engager, such as e.g. described in WO2016/207278, WO 2018/148445, WO2018/152518, WO2019195409 US2018282386, Vallera et al. (2016, supra) and Demaria et al. (2021 , supra).
- a (multispecific) reference antigen binding protein is for example AVC-006 as described in WO2024/056862, comprising one HER2-binding region and one NKG2D-binding region.
- NK cell activation and cytotoxicity assays which detect the expression of an NK activation marker or which detects NK cell cytotoxicity, or for detecting NK cell activation and cytotoxicity assays (e.g. short and long term cytotoxicity assays) are described in the Examples herein, as well as for example, in Pessino et al, J. Exp. Med, 1998, 188 (5): 953-960; Sivori et al, Eur J Immunol, 1999. 29:1656-1666; Brando et al, (2005) J. Leukoc. Biol.
- a conjugate comprising a 4-1 BBL ECD mutein or an antigen binding protein as described herein has the ability to induce hyper-functionality (or a hyper-functional phenotype) in an NK cell or in a population of NK cells.
- a hyper-functional NK cell phenotype is herein understood as a phenotype that has one or more of the features of the phenotype that is obtained by expanding NK cells obtained from donors ex vivo by co-culturing them with irradiated K562 feeder cells modified to express membrane bound IL-21 (mblL-21) and 4-1 BB ligand (FC21 feeder cells) as described by Denman et al. (2012, supra).
- ex vivo expansion of donor NK cells by co-culturing produces a population of NK cells having one or more (or preferably all) of the features selected from the group: a) the fold expansion of the expanded NK cells is at least 0.5, 1 .0, 2.0 or 5.0 fold of the fold expansion of expanded NK cells obtained by ex vivo expansion by co-culturing with irradiated FC21 feeder cells; b) the telomere length of the expanded NK cells is increased by at least 10, 15, 20, 25, 30, 35, 40, 45, 50 or 55% as compared to the telomere length of fresh NK cells, preferably, the percentage telomere length increase of the expanded NK cells as compared to the telomere length of fresh NK cells, is at least 0.5, 1 .0, 2.0 or 5.0 fold of the percentage telomere
- the ex vivo expansion of donor NK cells further comprises that the NK cells are co-cultured with tumor cells expressing a TAA specifically bound by the conjugate comprising a 4-1 BBL ECD mutein or the antigen binding protein.
- Protocols for ex vivo expansion of donor NK cells and assays for determining fold expansion, telomere length increase, expression level of NK cell activating receptors, cytokine secretion and cytotoxicity are described in Denman et al. (2012, supra) and in the Examples herein.
- the invention relates to a pharmaceutical composition
- a pharmaceutical composition comprising a 4- 1 BBL ECD mutein as described herein or a conjugate comprising a 4-1 BBL ECD mutein and an antigen binding protein as described herein, and a pharmaceutically acceptable carrier (excipient).
- the pharmaceutically acceptable carrier such as an adjuvant, or vehicle, is for administration of the protein to a subject.
- Said pharmaceutical composition can be used in the methods of treatment described herein below by administration of an effective amount of the composition to a subject in need thereof.
- subject refers to all animals classified as mammals and includes, but is not restricted to, primates and humans. The subject is preferably a male or female human of any age or race.
- pharmaceutically acceptable carrier is intended to include any and all solvents, dispersion media, coatings, antibacterial and antifungal agents, isotonic and absorption delaying agents, and the like, compatible with pharmaceutical administration (see e.g. “Handbook of Pharmaceutical Excipients”, Rowe et al eds. 7 th edition, 2012, www.pharmpress.com).
- the use of such media and agents for pharmaceutically active substances is well known in the art. Except insofar as any conventional media or agent is incompatible with the active compound, use thereof in the compositions is contemplated.
- Acceptable carriers, excipients, or stabilizers are nontoxic to recipients at the dosages and concentrations employed, and include buffers such as phosphate, citrate, and other organic acids; antioxidants including ascorbic acid and methionine; preservatives (such as octadecyldimethylbenzyl ammonium chloride; hexamethonium chloride; benzalkonium chloride, benzethonium chloride; phenol, butyl or benzyl alcohol; alkyl parabens such as methyl or propyl paraben; catechol; resorcinol; cyclohexanol; 3- pentanol; and m-cresol); low molecular weight (less than about 10 residues) proteins; proteins, such as serum albumin, gelatin, or immunoglobulins; hydrophilic polymers such as polyvinylpyrrolidone; amino acids such as glycine, glutamine, asparagine, histidine, arginine
- the pharmaceutical composition of the invention may also contain more than one active compound as necessary for the particular indication being treated, preferably those with complementary activities that do not adversely affect each other.
- a chemotherapeutic agent e.g. a cytokine, an analgesic agent, a thrombolytic or an immunomodulating agent, e.g. an immunosuppressive agent or an immunostimulating agent.
- the effective amount of such other active agents depends, among other things, on the amount of the protein of the invention present in the pharmaceutical composition, the type of disease or disorder or treatment, etc.
- the protein of the invention is prepared with carriers that will protect said compound against rapid elimination from the body, such as a controlled release formulation, including implants and microencapsulated delivery systems, e.g. liposomes.
- a controlled release formulation including implants and microencapsulated delivery systems, e.g. liposomes.
- Biodegradable, biocompatible polymers can be used, such as ethylene vinyl acetate, polyanhydrides, polyglycolic acid, collagen, polyorthoesters, and polylactic acid. Methods for preparation of such formulations will be apparent to those skilled in the art.
- Liposomal suspensions, including targeted liposomes can also be used as pharmaceutically acceptable carriers. These can be prepared according to methods known to those skilled in the art, for example, as described in US 4,522,811 or WO2010/095940.
- the administration route of the protein of the invention can be parenteral.
- parenteral as used herein includes intravenous, intra-arterial, intralymphatic, intraperitoneal, intramuscular or subcutaneous.
- the intravenous or intramuscular forms of parenteral administration are preferred.
- systemic administration is meant intravenous, intraperitoneal and intramuscular administration.
- the amount of the protein required for therapeutic or prophylactic effect will, of course, vary with the protein chosen, the nature and severity of the condition being treated and the patient.
- the protein may suitably be administered by pulse infusion, e.g., with declining doses of the protein.
- the dosing is given by injections, most preferably intravenous, intramuscular or subcutaneous injections, depending in part on whether the administration is brief or chronic.
- the pharmaceutical composition of the invention may be in a form suitable for parenteral administration, such as sterile solutions, suspensions or lyophilized products in the appropriate unit dosage form.
- Pharmaceutical compositions suitable for injectable use include sterile aqueous solutions (where water soluble) or dispersions and sterile powders for the extemporaneous preparation of sterile injectable solutions or dispersions.
- suitable carriers include physiological saline, bacteriostatic water, CremophorEM (BASF, Parsippany, N.J.) or phosphate buffered saline (PBS). In all cases, the composition must be sterile and should be fluid to the extent that easy syringability exists.
- the carrier can be a solvent or dispersion medium containing, for example, water, ethanol, a pharmaceutically acceptable polyol like glycerol, propylene glycol, liquid polyethylene glycol, and suitable mixtures thereof.
- the proper fluidity can be maintained, for example, by the use of a coating such as lecithin, by the maintenance of the required particle size in the case of dispersion and by the use of surfactants.
- Prevention of the action of microorganisms can be achieved by various antibacterial and antifungal agents, for example, parabens, chlorobutanol, phenol, ascorbic acid, thimerosal, and the like.
- isotonic agents for example, sugars, polyalcohols such as mannitol, sorbitol or sodium chloride in the composition.
- Prolonged absorption of the injectable compositions can be brought about by including in the composition an agent which delays absorption, for example, aluminium monostearate and gelatin.
- Sterile injectable solutions can be prepared by incorporating the active compound (e.g a protein of the invention) in the required amount in an appropriate solvent with one or a combination of ingredients enumerated above, as required, followed by filtered sterilization.
- dispersions are prepared by incorporating the active compound into a sterile vehicle which contains a basic dispersion medium and the required other ingredients from those enumerated above.
- the preferred methods of preparation are vacuum drying and freeze-drying which yields a powder of the active ingredient plus any additional desired ingredient from a previously sterile-filtered solution thereof.
- said pharmaceutical composition is administered via intravenous (IV), intramuscular (IM) or subcutaneous (SC) route.
- Adequate excipients can be used, such as bulking agents, buffering agents or surfactants.
- the mentioned formulations will be prepared using standard methods for preparing parenterally administrable compositions as are well known in the art and described in more detail in various sources, including, for example, “Remington: The Science and Practice of Pharmacy” (Ed. Allen, L. V. 22nd edition, 2012, www.pharmpress.com).
- Dosage unit form refers to physically discrete units suited as unitary dosages for the subject to be treated; each unit containing a predetermined quantity of active compound (protein of the invention) calculated to produce the desired therapeutic effect in association with the required pharmaceutical carrier.
- the specification for the dosage unit forms of the invention is dictated by and directly dependent on the unique characteristics of the active compound and the particular therapeutic effect to be achieved, and the limitations inherent in the art of compounding such an active compound for the treatment of individuals.
- the protein of the invention will generally be administered in the range of from 0.001 to 1 ,000 mg/kg body weight/day, preferably about 0.01 to about 100 mg/kg body weight/day, most preferably from about 0.05 to 10 mg/kg body weight/day, such as about 1 , 10, 100 or 1000 microgram per kg body weight per day, either continuously (e.g. by infusion), as a single daily dose or as multiple divided doses during the day.
- the clinician will generally be able to determine a suitable daily dose, depending on the factors mentioned herein. It will also be clear that in specific cases, the clinician may choose to deviate from these amounts, for example on the basis of the factors cited above and his expert judgment.
- the pharmaceutical compositions can be included in a container, pack, or dispenser together with instructions for administration.
- a 4-1 BBL ECD mutein as described herein or a conjugate comprising a 4-1 BBL ECD mutein and an antigen binding protein as described herein for use as a medicament.
- the 4-1 BBL ECD mutein as described herein or the conjugate as described herein is used as an active ingredient, component or substance in a medicament.
- the invention pertains to a use of a 4-1 BBL ECD mutein as described herein or a conjugate comprising a 4-1 BBL ECD mutein and an antigen binding protein as described herein for the manufacture of a medicament, e.g. a pharmaceutical preparation comprising the 4-1 BBL ECD mutein, the fusion protein or the conjugate as an active ingredient, for the treatment, prevention or diagnosis of a disease in a subject in need thereof.
- the invention pertains to a 4-1 BBL ECD mutein as described herein or a conjugate comprising a 4-1 BBL ECD mutein and an antigen binding protein as described herein, or a pharmaceutical preparation comprising the 4-1 BBL ECD mutein, the fusion protein or the conjugate as an active ingredient, for use in the treatment, prevention or diagnosis of a disease in a subject in need thereof.
- the invention pertains to a method for the treatment of a disease in a subject in need thereof, wherein the method comprises the step of administering to the subject (an effective amount of) a 4-1 BBL ECD mutein as described herein or a conjugate comprising a 4-1 BBL ECD mutein and an antigen binding protein as described herein, or a pharmaceutical preparation comprising the 4-1 BBL ECD mutein, the fusion protein or the conjugate as an active ingredient.
- the disease to be treated, prevented or diagnosed using the 4-1 BBL ECD mutein, the fusion protein or the conjugate can be a cancer, an infectious disease, an inflammatory disease or an autoimmune disease.
- the disease to be treated, prevented or diagnosed using the 4-1 BBL ECD mutein, the fusion protein or the conjugate is a cancer, e.g. a cancer as described below.
- the cancer preferably is a cancer expressing a TAA as described herein above, more preferably the cancer is expressing a TAA that is bound by the antigen binding protein in the conjugate.
- the TAA is TROP2.
- the treatment can comprise the steps of a) identifying a TAA expressed by (tumor) cells in the cancer; b) selection of conjugate comprising an antigen binding protein as described herein that specifically binds the TAA; c) using the conjugate selected in b) in the treatment of the cancer.
- the cancer can be a cancer as described below.
- the TAA is TROP2.
- the invention pertains to a method for enhancing anti-tumor activity of an NK cell in a subject, the method comprising the step of administering to the subject a 4-1 BBL ECD mutein, a fusion protein or a conjugate as described herein, or a pharmaceutical preparation comprising the 4-1 BBL ECD mutein, the fusion protein or the conjugate as an active ingredient.
- the subject has cancer, e.g. a cancer as described below.
- the cancer comprises tumor cells expressing a TAA, more preferably the tumor cells express a TAA that is bound by the antigen binding protein in the conjugate.
- the TAA is TROP2.
- the invention pertains to a method for expanding and/or inducing hyperfunctionality NK cells a in a subject, the method comprising the step of administering to the subject a 4-1 BBL ECD mutein, a fusion protein or a conjugate as described herein, or a pharmaceutical preparation comprising the 4-1 BBL ECD mutein, the fusion protein or the conjugate as an active ingredient.
- the fold expansion and the hyper-functionality preferably is as herein described above.
- the subject has cancer, preferably a cancer comprising tumor cells expressing the TAA, more preferably the tumor cells express a TAA that is bound by the antigen binding protein in the conjugate.
- the TAA is TROP2.
- the 4-1 BBL ECD muteins or the conjugates of the invention can thus be advantageously used to expand the numbers of NK cells and/or to induce hyper-functionality of the NK cells in a subject suffering from cancer.
- a further advantage of the hyper-functionality of NK cells as induced by the 4-1 BBL ECD mutein, the fusion protein or the conjugate of the invention includes their increased secretion of cytokines such as TNF-a, IFN-y and IL-6, which help shape adaptive immune response involving DCs and T cells.
- NK cells have been reported to promote the recruitment to the tumor micro environment of a DC subset specializing in the cross-presentation of tumor antigens to CD8 + T cells, suggesting a crucial role for NK cells in the potentiation of antitumor CD8 + T cell responses (Bottcher et al., Cell, 2018. 172: 1022-1037; and Barry et al., Nat. Med. 2018. 24: 1178-1191).
- the contribution of NK cells to the orchestration of antitumor T-cell responses has also been confirmed experimentally in mice, demonstrating that, in addition to their direct effector functions, NK cell can promote T-cell responses and long-lasting immune control of tumors (Bonavita et al., Immunity 2020. 53: 1215-1229).
- a 4-1 BBL ECD mutein, a fusion protein or a conjugate as described herein for the manufacture of a medicament, for example for the administration to a subject, wherein the subject has cancer, an infectious disease or an inflammatory disease.
- the TAA is a TAA as defined herein above and/or an antigen expressed on the surface of a malignant cell of a type of cancer as described below.
- the TAA is a TROP2 as defined herein above and/or a TROP2 antigen expressed on the surface of a malignant cell of a type of cancer as described below.
- a subject to be treated in accordance with the methods described herein can have a cancer selected from the group consisting of: acute lymphoblastic, acute myeloid leukemia, adrenocortical carcinoma, appendix cancer, basal cell carcinoma, bile duct cancer, bladder cancer, bone cancer, osteosarcoma and malignant fibrous histiocytoma, brain stem glioma, brain tumor, brain tumor, brain stem glioma, central nervous system atypical teratoid/rhabdoid tumor, central nervous system embryonal tumors, cerebellar astrocytoma, cerebral astrocytoma/malignant glioma, craniopharyngioma, ependymoblastoma, ependymoma, medulloblastoma, medulloepithelioma, pineal parenchymal tumors of intermediate differentiation, supratentorial primitive neuroectodermal tumors and pineoblastoma, visual pathway and
- a 4-1 BBL ECD mutein, a fusion protein or a conjugate as described herein can be used as a monotherapy (i.e. without other therapeutic agents).
- a 4-1 BBL ECD mutein, a fusion protein or a conjugate as described herein can be used in combined treatments.
- a 4-1 BBL ECD mutein, a fusion protein or a conjugate as described herein is used in combination with another immunotherapy, e.g. a cellular immunotherapy.
- the 4- 1 BBL ECD mutein, the fusion protein or the conjugate can thus be used in combination with the adoptive transfer of immune cells, including the adoptive transfer of T cells, e.g. CAR T cells, or NK cells.
- the NK cells can e.g. be enriched or expanded by methods known in the art or can be ex vivo expanded NK cells as herein described below.
- a 4-1 BBL ECD mutein, a fusion protein or a conjugate as described herein can be used in combined treatments with one or more other therapeutic agents.
- the additional therapeutic agent or agents will normally be administered in amounts and treatment regimens typically used for that agent in a monotherapy for the particular disease or condition being treated.
- Such therapeutic agents when used in the treatment of cancer include, but are not limited to anti-cancer agents and chemotherapeutic agents.
- Exemplary therapeutic agents that may be used as part of a combination therapy in treating cancer, include, for example, radiation, mitomycin, tretinoin, ribomustin, gemcitabine, vincristine, etoposide, cladribine, mitobronitol, methotrexate, doxorubicin, carboquone, pentostatin, nitracrine, zinostatin, cetrorelix, letrozole, raltitrexed, daunorubicin, fadrozole, fotemustine, thymalfasin, sobuzoxane, nedaplatin, cytarabine, bicalutamide, vinorelbine, vesnarinone, aminoglutethimide, amsacrine, proglumide, elliptinium acetate, ketanserin, doxifluridine, etretinate, isotretinoin, streptozoc
- immune checkpoint inhibitors include agents that inhibit one or more of (i) cytotoxic T-lymphocyte-associated antigen 4 (CTLA4), (ii) programmed cell death protein 1 (PD1), (iii) PD-L1 , (iv) LAG3, (v) B7-H3, (vi) B7-H4, and (vii) TIM3.
- CTLA4 cytotoxic T-lymphocyte-associated antigen 4
- PD1 programmed cell death protein 1
- PD1 programmed cell death protein 1
- PD1 programmed cell death protein 1
- PD1 programmed cell death protein 1
- PD1 programmed cell death protein 1
- PD1 programmed cell death protein 1
- PD1 programmed cell death protein 1
- PD1 programmed cell death protein 1
- PD1 programmed cell death protein 1
- PD1 programmed cell death protein 1
- PD1 programmed cell death protein 1
- PD-L1 programmed cell death protein 1
- TIM3 monoclonal antibodies against
- the administration of a 4-1 BBL ECD mutein, a fusion protein or a conjugate as described herein and the other therapeutic agent can elicit an additive or synergistic effect on immunity and/or on therapeutic efficacy.
- a 4-1 BBL ECD mutein, a fusion protein or a conjugate as described herein is used as at least one of an neoadjuvant therapy and an adjuvant therapy, in addition to a primary therapy comprising e.g. surgery, chemo and/or radiation therapy.
- a primary therapy comprising e.g. surgery, chemo and/or radiation therapy.
- the 4-1 BBL ECD mutein, the fusion protein or the conjugate is administered before the primary treatment, e.g. to help reduce the size of a tumor (such that less extensive surgery and/or radiation therapy is required), kill cancer cells that have spread (e.g. micrometastatic disease) and/or reduce the risk of tumor cells spreading post-surgery.
- the 4-1 BBL ECD mutein, the fusion protein or the conjugate is administered after the primary treatment, e.g. to treat minimal residual disease (destroy remaining cancer cells).
- the 4-1 BBL ECD mutein, the fusion protein or the conjugate can also be administered as a maintenance therapy, which is a long-term adjuvant therapy, e.g. administered repeatedly over the course of at least one month or one year.
- the use of the 4-1 BBL ECD mutein or a the conjugate as an neoadjuvant therapy and/or an adjuvant therapy lowers relapse rates.
- the 4-1 BBL ECD mutein, the fusion protein or the conjugate can be used as monotherapy or in in combined treatments as described above.
- the invention relates to methods wherein a 4-1 BBL ECD mutein, a fusion protein or a conjugate as described herein is used for ex vivo (in vitro) treatment of an NK cell or a population of NK cells.
- the method can be a method for at least one of expanding, pre-activating, activating, enhancing cytotoxicity and/or cytokine production, and inducing a hyper-functional phenotype as defined above.
- the methods at least comprise the step of contacting an NK cell or a population thereof, with a 4-1 BBL ECD mutein, a fusion protein or a conjugate as described herein or with a composition comprising the 4-1 BBL ECD mutein, a fusion protein or the conjugate.
- the method comprises the further step of co-culturing the NK cells with tumor cells expressing a TAA specifically bound by the antigen binding protein in the conjugate.
- the NK cells are co-cultured with the tumor cells expressing the TAA specifically bound by the antigen binding protein in the conjugate, in the presence of the conjugate.
- the TAA is TROP2.
- An NK cell or a population of NK cells for ex vivo treatment can be enriched from peripheral blood mononuclear cells (PBMCs).
- PBMCs peripheral blood mononuclear cells
- NK cells enriched from PBMCs can be seeded at 0.1 x 10 6 NK cells/mL in SCGM (CellGenix, Portsmouth, N.H.), supplemented with 10% FBS, 2 mM Glutamax, 100 U/mL IL-2 (Peprotech, Rocky Hill, N.J.) and 1 , 2, 5, 10, 20, 50, 100, 200, 500, 1000 pg/mL of one or more of the 4-1 BBL ECD muteins or a conjugates as described herein. Media with supplements can be refreshed every 2-3 days.
- the duration of the contact between the NK cells and a 4-1 BBL ECD mutein, a fusion protein or a conjugate as described herein can be for any length of time necessary to achieve the desired phenotype of the NK cells.
- the contact can be as little as 1 minute or as much as 7 days (for example, culturing the NK cells in the presence of a 4- 1 BBL ECD mutein, a fusion protein or a conjugate as described herein for 7 days).
- the NK cells are contacted with the 4-1 BBL ECD mutein, the fusion protein or the conjugate for 5, 6, 7, 8, 9, 10, 11 , 12, 13, 14, 15, 16, 17, 18, 19, 20, 21 , 22, 23, 24, 36, or 48 hours.
- the NK cells are contacted with the 4-1 BBL ECD mutein, the fusion protein or the conjugate for 5, 6, 7, 8, 9, 10, 11 , 12, 13, 14, 15, 16, 17, 18, 19, 20, 21 , 22, 23, 24, 25, 26, 27, 28, 29, 30, 31 , 32, 33, 34, 35, 36, 37, 38, 39, 40, 41 , 42, 43, 44, 45, 46, 47, 48, 49, 50, 51 , 52, 53, 54, 55, 56, 57, 58, 59, 60, 61 , 62, 63, 64, 65, 66, 67, 68, 69, 70, 71 , or 72 days.
- the ex vivo treated (expanded) NK cells have one or more features selected from: a) the fold expansion of the expanded NK cells is at least 0.5, 1 .0, 2.0 or 5.0 fold of the fold expansion of expanded NK cells obtained by ex vivo expansion by co-culturing with irradiated FC21 feeder cells; b) the telomere length of the expanded NK cells is increased by at least 10, 15, 20, 25, 30, 35, 40, 45, 50 or 55% as compared to the telomere length of fresh NK cells, preferably, the percentage telomere length increase of the expanded NK cells as compared to the telomere length of fresh NK cells, is at least 0.5, 1 .0, 2.0 or 5.0 fold of the percentage telomere length increase of expanded NK cells obtained by ex vivo expansion by co-culturing with irradiated FC21 feeder cells; c) the expression level of at least one NK cell activating receptor selected from NKG2D, NKp30,
- the invention pertains to a method for the treatment of a disease in a subject in need thereof, wherein the method comprises the step of administering to the subject (an effective amount of) NK cells obtained in the above method for ex vivo treatment of an NK cell or a population of NK cells.
- the NK cells can be administered to a subject in need thereof.
- the method for the treatment comprises the administration of the ex vivo treated NK cells in combination with a 4-1 BBL ECD mutein, a fusion protein or a conjugate as described herein, or a pharmaceutical preparation comprising the 4-1 BBL ECD mutein, the fusion protein or the conjugate as an active ingredient.
- the method for the treatment comprises the administration of the ex vivo treated NK cells in combination with another NK cell engager, such as e.g. described in WO2016/207278, WO 2018/148445, WO2018/152518, WO2019195409 US2018282386, Vallera et al. (2016, supra) and Demaria et al. (2021 , supra), or with a multispecific antigen binding protein as described in the co-pending applications by the same applicant WO2024/056862 and WO2024/056861 .
- another NK cell engager is for example AVC-006 as described in WO2024/056862, comprising one HER2-binding region and one NKG2D-binding region.
- the ex vivo treated NK cells can be used in combination with the other engager and with a 4-1 BBL ECD mutein, a fusion protein or a conjugate as described herein.
- the disease to be treated can be a cancer, an infectious disease, an inflammatory disease or an autoimmune disease, as described above.
- the disease to be treated is a cancer, as described above.
- the cancer preferably is a cancer expressing a TAA that is specifically bound by the antigen binding protein in the conjugate that is administered in combination with the ex vivo treated NK cells.
- the administration of the ex vivo treated NK cells in combination with the conjugate will facilitate targeting of the administered ex vivo treated NK cells to tumor cells expressing the TAA that is specifically bound by the antigen binding protein in the conjugate.
- the ex vivo treated NK are autologous to the subject. In another embodiment, the ex vivo treated NK are allogeneic, e.g. derived from donor PBMCs.
- the invention relates to a nucleic acid molecule comprising one or more nucleotide sequences encoding a polypeptide chain of a 4-1 BBL ECD mutein, a fusion protein or a conjugate as described herein.
- the nucleotide sequence encoding such a polypeptide chain preferably encodes a signal peptide operably linked to the polypeptide chain.
- a nucleic acid molecule comprising one or more of the nucleotide sequences encoding a polypeptide chain further preferably comprises regulatory elements for (or conducive to) the expression of the polypeptide chain in an appropriate host cell, which regulatory elements are operably linked to the nucleotide sequence.
- the host cell may be any suitable species or organism capable of producing N-linked glycosylated polypeptides, e.g. a mammalian host cell capable of producing human or rodent IgG type N-linked glycosylation.
- a mammalian host cell capable of producing human or rodent IgG type N-linked glycosylation.
- Appropriate cloning and expression vectors for use with bacterial, fungal, yeast, and mammalian cellular hosts are described by Pouwels et al. (Cloning Vectors: A Laboratory Manual, Elsevier, N.Y., 1985).
- Host cells comprising the nucleic acid molecule of the invention can be cultured under conditions that promote expression of the polypeptide.
- the invention relates to a method for producing a 4-1 BBL ECD mutein, a fusion protein or a conjugate as described herein.
- the method preferably comprises culturing a host cell as described above such that one or more nucleotide sequences are expressed and the 4-1 BBL ECD mutein, the fusion protein or the conjugate is produced.
- the method preferably comprises the step of cultivating a host cell comprising one or more of the nucleotide sequences encoding a polypeptide chain of the 4-1 BBL ECD mutein, the fusion protein or the conjugate.
- the host cell is preferably cultured under conditions conducive to expression of the one or more polypeptide chains.
- the method can further comprise the step of recovering the 4-1 BBL ECD mutein, the fusion protein or the conjugate.
- the 4-1 BBL ECD mutein, the fusion protein or the conjugate can be recovered by conventional protein purification procedures, including e.g. protein A-Sepharose, hydroxylapatite chromatography, gel electrophoresis, dialysis, size exclusion chromatograpy or affinity chromatography, using e.g. streptavidin/biotin (see e.g. Low et al., 2007, J. Chromatography B, 848:48-63; Shukla et al., 2007, J. Chromatography B, 848:28-39).
- the invention relates to a method for producing a pharmaceutical composition comprising a 4-1 BBL ECD mutein, a fusion protein or a conjugate as described herein, the method comprising the steps of a) producing the 4-1 BBL ECD mutein, the fusion protein or the conjugate in a method as defined above; and b) formulating the 4-1 BBL ECD mutein, the fusion protein or the conjugate with a pharmaceutically acceptable carrier as defined above, to obtain a pharmaceutical composition.
- NK boosters comprising IL-21 or 4-1 BBL ECD muteins show impaired capacity to induce proliferation only in the absence of tumor cells.
- NK booster AVC37 (a conjugate of trastuzumab and the I8H IL-21 mutein and wild type 4-1 BBL ECD) and NK booster AVC52 (a conjugate of trastuzumab and wild type IL-21 and the V153Q 4-1 BBL ECD mutein) show strongly impaired capacity to induce proliferation of NK cells but only in the absence of SKOV3 tumor cells expressing HER2.
- NK boosters AVC37 and AVC52 are comparable to that of control NK booster AVC1 (a conjugate of trastuzumab and wild type IL-21 and wild type 4-1 BBL ECD mutein).
- NK cells were cultured for 5 days with (dashed lines) or without (solid lines) tumor cells and indicated NK boosters in concentrations as indicated. Data shown is from measurements taken at the end of the co-culture. The darker and lighter grey areas indicate historical averages and the standard deviation obtained with AVC1 , with and without tumor cells present, respectively.
- NK booster AVC54 (a conjugate of trastuzumab and wild type IL-21 and the Q227E 4-1 BBL ECD mutein) show strongly impaired capacity to induce proliferation of NK cells but only in the absence of SKOV3 tumor cells expressing HER2.
- NK boosters AVC37 and AVC52 In the presence of SKOV3 tumor cells the ability of NK boosters AVC37 and AVC52 is comparable to that of control NK booster AVC1 (a conjugate of trastuzumab and wild type IL-21 and wild type 4-1 BBL ECD mutein).
- NK cells were cultured for 5 days with (dashed lines) or without (solid lines) tumor cells and indicated NK boosters in concentrations as indicated. Data shown is from measurements taken at the end of the co-culture.
- NK boosters comprising various 4-1 BBL ECD as indicated show impaired capacity to induce proliferation as compared to a corresponding control NK booster AVC1 comprising wild type 4-1 BBL ECD.
- NK cells were cultured for 5 days without tumor cells and indicated NK boosters, data shown is from measurements taken at the end of the co-culture. data shown is from measurements taken at the end of the co-culture.
- NK cell cytotoxicity against SKOV3 tumor cells is unaffected by IL-21 or 4-1 BBL mutations.
- NK cells were co-cultured for 5 days with tumor cells in the presence of NK booster AVC37 (a conjugate of trastuzumab and the I8H IL-21 mutein and wild type 4-1 BBL ECD), NK booster AVC52 (a conjugate of trastuzumab and wild type IL-21 and the V153Q 4-1 BBL ECD mutein) or control NK booster AVC1 (a conjugate of trastuzumab and wild type IL-21 and wild type 4-1 BBL ECD mutein), respectively, in concentrations as indicated. Data shown is from measurements taken at the end of the co-culture.
- NK boosters comprising IL-21 or 4-1 BBL ECD muteins to induce and support long-term NK cell expansion is unaffected.
- NK cells were expanded for 14 days with SKOV3 tumor cells that were opsonized with indicated NK boosters. Fold expansion of NK cells after 14 days is indicated.
- FIG. 6 Left hand panels show dose-response curves of NK boosters with 4-1 BBL ECD muteins in a 4-1 BB reporter cell assay, compared with control booster AVC1 with wild type 4-1 BBL. Righthand panels show the responses fitted at 100 nM booster and EC50 values in nM are given on the far-right.
- B) compares boosters AVC55, AVC56, AVC57, AVC58 and AVC59 to control booster AVC1 ;
- Figure 7 pECso values a 4-1 BB reporter cell assay (x-axis) of the NK boosters with 4-1 BBL ECD muteins as indicated and of control booster AVC1 with wild type 4-1 BBL are plotted against the affinities of the boosters for 4-1 BB as determined by surface plasmon resonance (y-axis).
- boosters AVC1 or AVC59 or a control protein were added at the start of each 3-day cycle to expose NK cells to new booster proteins at the beginning of every cycle.
- Control wells contained only NK cells and SKOV-3 target cells (NK + SKOV3), or only SKOV-3 target cells (SKOV3 only).
- FIG. 11 Interferon-gamma levels after co-culture with tumor cells that express the respective antigen. Data is shown as fold change over vehicle (NK cells + tumor cells).
- AVC-001 AVC1
- TROP2 BxPC3 tumor cells expressing TROP2.
- FIG. 12 Long-term cytotoxicity against (TROP2-expressing) BxPC3 tumor cells by NK cells stimulated with NK boosters AVC16 (based of Sacituzumab), AVC221 (based of AR47A6.4.2, described in US2008131428A1) and AVC227 (based of KM4097, described in US20120237518A1) upon repeated co-culture with BxPC3 tumor cells.
- NK cells were harvested and used to set up a new cycle of co-culture with fresh target cells at a 1 :1 E:T ratio.
- the NK boosters were added at the start of each 3-day cycle to expose NK cells to new booster protein at the beginning of every cycle.
- Control wells contained only NK cells and BxPC3 target cells (NK + BxPC3), or only BxPC3 target cells (BxPC3 only).
- FIG. 13 Long-term cytotoxicity against (TROP2-expressing) BxPC3 tumor cells by NK cells stimulated with NK boosters AVC16 (based of Fab-fragments from sacituzumab and comprising wild type IL-21 and a trimer of wild type 4-1 BBL ECD), AVC267 (based of Fab-fragments from sacituzumab and comprising the IL-21 L20W mutein and a trimer of wild type 4-1 BBL ECD) and control protein AVC 137 (a sacituzumab analogue without IL-21 or 4-1 BBL cytokines) upon repeated co-culture with BxPC3 tumor cells.
- AVC16 based of Fab-fragments from sacituzumab and comprising wild type IL-21 and a trimer of wild type 4-1 BBL ECD
- AVC267 based of Fab-fragments from sacituzumab and comprising the IL-21 L20W mutein and a trimer of wild type 4-1 BBL
- NK cells were were harvested and used to set up a new cycle of co-culture with fresh target cells at a 1 :1 E:T ratio.
- the NK boosters were added at the start of each 3-day cycle to expose NK cells to new booster protein at the beginning of every cycle.
- Control wells contained only NK cells and BxPC3 target cells (NK + BxPC3), or only BxPC3 target cells (BxPC3 only).
- Figure 14 14.
- NK boosters AVC16 (based of Fab-fragments from sacituzumab and comprising wild type IL-21 and a trimer of wild type 4-1 BBL ECD), AVC245 (based of Fab-fragments from sacituzumab and comprising the IL-21 DEL7 (N82- A83- G84- R85- R86- Q87- K88-) mutein and a trimer of 4-1 BBL ECD A154D mutein) and control protein AVC 137 (a sacituzumab analogue without IL-21 or 4-1 BBL cytokines) upon repeated co-culture with BxPC3 tumor cells.
- AVC16 based of Fab-fragments from sacituzumab and comprising wild type IL-21 and a trimer of wild type 4-1 BBL ECD
- AVC245 based of Fab-fragments from sacituzumab and comprising the IL-21 DEL7 (N82- A83- G84- R85- R86- Q
- NK cells were were harvested and used to set up a new cycle of co-culture with fresh target cells at a 1 :1 E:T ratio.
- the NK boosters were added at the start of each cycle to expose NK cells to new booster protein at the beginning of every cycle.
- Control wells contained only NK cells and BxPC3 target cells (NK + BxPC3), NK cells with BxPC3 target cells and PBS (Vehicle), or only BxPC3 target cells (BxPC3 only).
- Figure 15 In vivo pharmakinetics for NK boosters AVC16 and AVC245 compared to control antibodies AVC137 and trastuzumab. Mice were injected i.v. with 1 mg/kg body weight of the boosters or antibodies. Blood sample for analysis were drawn at indicated times after injection and levels of boosters and control antibodies in mouse serum was determined by ELISA.
- NK Effector cells
- Sub cultivation Ratio A sub cultivation ratio of 1 :2 to 1 :3 is recommended i.e., seeding at 3-6x10,000 cells/cm 2
- McCoy 5a medium modified + 2mM glutamine + 15% FBS + 1 % Penicillin Streptomycin
- NK cells Adjust NK cells to required density - 1 .6 x 10 6 /mL in NK media containing IL-2 (50 lU/mL)
- Total final volume per T75 flask will be 40 mL.
- NK cells and NucLight-Red (NLR) transduced SKOV3 tumor cells were co-cultured in a 2:1 ratio for 5 days with NK boosters present in different concentrations, using a 7-step 4-fold dilution series starting at 25 nM thus covering a range from 25 nM to 0.01 nM.
- the number of NLR-positive cells was quantified by an Incucyte automated microscope every 4 hours throughout the duration of culture and compared to the control condition where NK cells were co-cultured with NLR SKOV3 cells in the absence of NK boosters. Cytotoxicity was calculated as follows:
- NK cells were labeled with a amine-reactive cell proliferation dye (CPD), for example CellTrace Violet (Thermo Scientific, cat# C34557). Subsequently, labeled NK cells were used either in a coculture with SKOV3 cells or cultured by themselves with NK boosters present in different concentrations. In the case of a co-culture with SKOV3 cells a 7-step 4-fold dilution series starting at 25 nM thus covering a range from 25 nM to 0.01 nM was used. When only NK cells were cultured an 8-step 3-fold dilution series which covers a range from 100 nM to 0.01 nM was used instead. After a 5 day (co-)culture, NK cells were analyzed by flow cytometry for cell proliferation dye content, and the percentage of CPD-low cells was used as a read-out for proliferation. 1.1.10 Production of NK boosters
- CPD amine-reactive cell proliferation dye
- NK cell boosters (also referred to conjugates herein) as listed in Tables 1.1.10.1 and 1.1.10.2, having amino acid sequences as shown in the sequence listing, were prepared, purified and characterized essentially as described in WO2024/056862.
- AVC1 is the control NK cell booster with wild type 4-1 BBL and IL-21 .
- each assay cycle proceeded as follows: the biotin capture reagent was introduced over all surfaces (fc1-fc4), 4-1 BB or IL-21 R was captured specifically on flow cell 2 (fc2), and the boosters were injected in five serial dilutions (starting at different concentrations) for a 60-second association phase and a 600/1200s dissociation phase (the longer dissociation was applied after the highest concentration).
- a standard regeneration protocol was then applied to completely remove the ligand-receptor complex from all surfaces, restoring the chip to baseline before the next cycle.
- a repeated co-culture system was set up, similar to the set-up used by Thakur et al. (J Cancer Res Clin Oncol. 2020 Aug; 146(8): 2007-2016.) to study repeated cytotoxicity of CAR-Ts with a HER2- EGFR bi-specific binder. Since for these longer term measurements an idea of general cell culture state is desirable, an Incucyte ® Live-Cell Analysis System was used.
- SKOV-3 target cells and NK cells purified via negative selection using RosetteSep from normal donor buffy coats as above) were used in an E:T ratio of 1 :1 .
- the SKOV-3 target cells were lentivirally transduced with Nuclight Red (Sartorius Cat# 4625) to allow read-out of fluorescently labeled target cell counts. Assays were performed in triplicate.
- a fixed amount of 10,000 fluorescently labeled target cells in 200 pl medium per well was used to ensure a sufficient amount of nutrients for at least 3 days of culture.
- Co-culture was performed in the presence of 50 lU/mL IL-2.
- NK cells were harvested and used to setup a new round of co-culture with fresh target cells in a 1 :1 E:T ratio.
- 25 nM of the NK boosters were added at the start of each 3 day round to expose NK cells to new booster proteins at the beginning of every round.
- Control wells contained only NK cells and SKOV-3 target cells, or only SKOV-3 target cells. Cells were monitored and fluorescently labeled target cells were counted every 3 hours. The experiment was continued for 6 co-culture rounds, i.e., for 18 days.
- Efficacy of AVC245 in in vivo induction of expansion of NK cells and reducing tumor burden was assessed in SKOV-3 xenograft mice relative to IgG TROP2-targeting control.
- Age-matched female NRG mice receive non-lethal low dose total body irradiation at Day -1 with 230 cGy.
- 1 x 10 6 human donor NK cells in 400 pL per mouse were injected i.p.
- the mice were engrafted with 5x10 5 Luciferase-expressing SKOV-3 cells (SKOV-3-Luc) via i.p. injection.
- mice were used, and for the tumor-only and NK +tumor controls, groups of 5 mice were used.
- AVC137 5.09 mg/kg
- equimolar AVC245 8 mg/kg
- vehicle was injected i.p. 3x per week (i.e., Monday, Wednesday, and Friday) for the first week and 2x/week (i.e., Monday and Friday) subsequent weeks.
- 5000 lU/mouse of recombinant human IL-2 will be injected i.p. 3x per week (i.e., Monday, Wednesday, and Friday).
- peripheral blood was collected from each mouse and used for staining to determine absolute NK cell numbers per mL of blood via flow cytometry. Blood was collected prior to any treatments scheduled for the day.
- Tumor burden was quantified on the first day of each week (Day 7, 14, 21 , etc.) via bioluminescent imaging (BLI) using auto exposure. With the exception that the first BLI was conducted on Day -1 in lieu of Day 0 and the final BLI on the day prior to experiment endpoint. BLI was done prior to any injections (i.e., NK cells, AVC, IL-2) that day.
- BLI bioluminescent imaging
- Figure 5 shows that the ability of NK boosters AVC37 or AVC52, comprising IL-21 or 4-1 BBL ECD muteins respectively, to induce and support long-term NK cell expansion is hardly affected.
- Table 1 .2.1 presents the reduced binding affinities for 4-BB of NK booster comprising 4-1 BBL ECD muteins as indicated, as compared to a corresponding control NK booster AVC1 , comprising wild type 4-1 BBL ECD.
- Table 1 .2.1 Overview of the reduced binding affinities for 4-1 BB of the boosters, and of their ability to induce of proliferation of NK cells in the presence of SKOV3 tumor cells at saturating concentration (25 nM) of boosters comprising trimers of 4-1 BBL ECD muteins combined with wild type IL-21 as indicated, expressed as percentage of control booster AVC1 (with a trimer ofwild type 4-1 BBL ECD and wild type IL-21).
- Table 1 .2.1 presents the reduced binding affinities for 4-1 BB of NK boosters comprising trimers of 4-1 BBL ECD muteins as indicated, as compared to a corresponding control NK booster AVC1 , comprising a trimer of wild type 4-1 BBL ECD.
- Table 1 .2.1 further presents the ability of the boosters to induce of proliferation of NK cells in the presence of SKOV3 tumor cells at saturating concentration (25 nM) of the boosters, expressed as percentage of control booster AVC1.
- the affinity for 4-1 BB of many of the NK boosters with 4-1 BBL muteins is reduced by at least one order of magnitude compared the AVC1 booster with wild type 4-1 BBL.
- NK boosters with 4-1 BBL muteins retain their potency to induce NK cell expansion compared to the AVC1 control booster with wild type 4-1 BBL (Figure 8).
- NK cells were seeded in the presence of booster or vehicle (opsonised SK-OV-3 cells) and expansion of NK cells was followed over the course over 14 days as described in Example 1.1.7.
- the reduced affinity of the boosters for 4-1 BB does not significantly impact expansion compared to AVC1 , except for AVC55 which shows lower expansion compared to AVC1 and the other boosters.
- Figure 9 shows the results the long-term repeated NK cell cytotoxicity assay as described in Example 1.1.13.
- NK booster AVC59 comprising the A154D 4-1 BBL ECD mutein was compared to control booster AVC1 comprising wild type 4-1 BBL ECD. Further controls contained vehicle, only NK cells and SKOV-3 target cells, or only SKOV-3 target cells. As can be seen in Figure 9, the AVC59 booster shows similar efficacy in a long-term cytotoxicity assay as the wild type booster AVC1.
- the boosters’ ability to induce maximal proliferation of NK cells in the presence of SKOV3 tumor cells is determined at a saturating concentration of 25 nM booster.
- the boosters’ ability to induce maximal NK cell proliferation is determined for boosters comprising IL-21 muteins combined with either wild type 4-1 BBL ECD or the 4-1 BBL A154D mutein with reduced affinity for its cognate receptor 4-1 BB and compared with control booster AVC1 .
- Also presented in Table 1 .2.3 for each of the boosters are their pECso values for the induction of proliferation of NK cells in the presence of SKOV3 tumor cells. Table 1 .2.3.
- NK cell boosters comprising a wild type 4-1 BBL ECD and a number of selected IL-21 muteins with reduced affinity for IL-21 R is hardly affected compared to the corresponding booster with wild type IL-21 .
- the pECso values are not reduced by no more than log 0.5 compared to the control booster and the maximum induced proliferation at saturating booster concentrations is not reduced by more than 10% compared to the control booster.
- the pECso values are still not reduced by no more than log 0.5 compared to the control booster but the maximum induced proliferation at saturating booster concentration is significantly reduced up to more than 50% compared to control for at least two of the IL-21 muteins.
- the IL-21 muteins L20W retains most of its ability to maximally induce NK cell proliferation in combination with the 4-1 BBL mutein, with no more than about 10% reduction in maximally induced proliferation as compared to the corresponding wild type control booster AVC1.
- the AVC190 booster comprising the combination of the 4-1 BBL ECD mutein A154D and the IL-21 mutein DEL7 (N82- A83- G84- R85- R86- Q87- K88-) even outperforms the wild type control booster AVC1 in terms of maximum induced proliferation at saturating booster concentration.
- NK cell cytotoxicity was compared for boosters AVC1 and AVC16, targeting HER2 and TROP2, respectively.
- Long-term NK cell cytotoxicity induced by the conjugates AVC1 and AVC16 was determined essentially as described in Example 1.1.13, except that only a single round co-culture of NK cells and target cells was performed and followed for 96 hours. Briefly, NK cell cytotoxicity was determined against tumor cell lines expressing a TAA specifically bound by the conjugates AVC1 and AVC16 as indicated in Table 1 .2.4.
- Figure 12 shows a comparison of NK boosters AVC16 (based of Fab-fragments from sacituzumab), AVC221 (based of Fab-fragments from AR47A6.4.2, described in US20120237518A1) and AVC227 (based of Fab-fragments from AR47A6.4.2, described in US2008131428A1) in the longterm repeated NK cell cytotoxicity assay as described in Example 1 .1 .13. Further controls only NK cells and BxPC3 target cells (i.e. without Booster) or only BxPC3 target cells.
- AVC16 based of Fab-fragments from sacituzumab
- AVC221 based of Fab-fragments from AR47A6.4.2, described in US20120237518A1
- AVC227 based of Fab-fragments from AR47A6.4.2, described in US2008131428A1
- Figure 13 shows a comparison of NK boosters AVC16 (based of Fab-fragments from sacituzumab and comprising wild type IL-21 and a trimer of wild type 4-1 BBL ECD), AVC267 (based of Fab- fragments from sacituzumab and comprising the IL-21 L20W mutein and a trimer of wild type 4- 1 BBL ECD) and control protein AVC 137 (a sacituzumab analogue without IL-21 or 4-1 BBL cytokines) in the long-term repeated NK cell cytotoxicity assay as described in Example 1.1.13. Further controls only NK cells and BxPC3 target cells (i.e. without Booster) or only BxPC3 target cells. As can be seen in Figure 13, the NK booster AVC267 comprising the IL-21 mutein L20W shows a similar long-term in vitro tumor control as the AVC16 booster with wild type IL-21 .
- Figure 14 shows a comparison of NK boosters AVC16 (based of Fab-fragments from sacituzumab and comprising wild type IL-21 and a trimer of wild type 4-1 BBL ECD), AVC245 (based of Fab- fragments from sacituzumab and comprising the IL-21 DEL7 (N82- A83- G84- R85- R86- Q87- K88- ) mutein and a trimer of 4-1 BBL ECD A154D mutein) and control protein AVC 137 (a sacituzumab analogue without IL-21 or 4-1 BBL cytokines) in the long-term repeated NK cell cytotoxicity assay as described in Example 1 .1.13.
- AVC16 based of Fab-fragments from sacituzumab and comprising wild type IL-21 and a trimer of wild type 4-1 BBL ECD
- AVC245 based of Fab- fragments from sacituzumab and comprising the IL-21 DEL
- NK booster AVC245 comprising both IL-21- and 4-1 BBL ECD-muteins shows a long-term in vitro tumor control that is even better than the AVC16 booster with wild type IL-21 and 4-1 BBL.
- Figure 15 shows in vivo pharmakinetics for NK boosters AVC16 and AVC245 compared to control antibodies AVC137 and trastuzumab.
- Mice were injected i.v. with 1 mg/kg body weight of the boosters or antibodies.
- Blood sample for analysis were drawn 15 minutes, 2 hours and 1 , 3 and 7 days after injection and levels of boosters and control antibodies in mouse serum was determined by ELISA.
- FIG 15 after an initial drop in the first 15 minutes serum levels stabilize for the remainder of the 7-day test period. There is no significant difference between any of the tested boosters and antibodies in this time-frame.
- Figure 16 shows that the in vivo efficacy of the AVC245 booster in reducing tumor burden in a mouse xenograft model (see Example 1.1.15) is significantly greater than that of control antibody AVC137 lacking the 4-1 BBL and IL-21 muteins.
- Table 1.2.5 confirms the statistical significance of the AVC245’s efficacy in reducing tumor burden over the control antibody AVC137, as well as the tumor-only and NK cells + tumor controls.
- Figure 17 shows that the in vivo efficacy of the AVC245 booster in inducing expansion of donor NK cells in a mouse xenograft model (see Example 1 .1.15) is significantly greater than that of control antibody AVC137 lacking the 4-1 BBL and IL-21 muteins.
- Figures 16 and 17 convincingly demonstrate the therapeutic efficacy of conjugates comprising an antigen-binding protein against a TAA and a combination of 4-1 BBL and IL-21 muteins as described herein, in treating a tumor expressing the TAA.
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Abstract
The present invention relates to conjugates of TROP2-specific antigen binding proteins and muteins of the cytokines 4-1 BB ligand (4-BBL) extracellular domain (ECD) and IL-21. The 4-1 BBL ECD muteins and IL-21 muteins have reduced affinities for their cognate receptors 4-1 BB and IL-21 receptor (IL-21 R), respectively. The 4-1 BBL ECD muteins can be present in homo- or heterotrimeric fusion protein comprising three 4-1 BBL ECD monomers. The conjugates can further comprise an antigen-binding region that has affinity for a surface antigen expressed on NK cells, e.g. CD16A. The conjugates of the invention specifically redirect and activate NK cells to lyse targeted tumor cells that express TROP2. The invention further relates to the use of these conjugates thereof in the treatment of cancer, preferably a cancer expressing the TROP2.
Description
Conjugates of TROP2-specific antigen binding proteins and cytokines
Field of the invention
The present invention relates to the field of medicine, in particular to the fields of oncology, immunology and immunotherapy of tumors. Specifically, the invention relates to anti-TROP2 antibodies to which are conjugated a mutein of the 4-1 BB ligand (4-1 BBL) extracellular domain (ECD), and a mutein of IL-21 . The conjugates are used in medical treatments of e.g. cancer.
Background of the invention
What today we consider a medical milestone in immune oncology was the application of redirecting a patient’s immune system, predominantly through manipulating alpha (a) beta (p) T cells to overcome tolerance to consequently attack tumor cells. This can be achieved by multiple means such as (i) antibodies directing such T cell responses called engagers as well as antibodies that overcome various ways of immune suppression by blocking immune checkpoint interactions, (ii) Alternatively, cellular immunotherapy has proven highly effective against certain types of leukemias using chimeric antigen receptors (CAR), genetically introduced into a patient’s own T cells which are subsequently grown in commercial manufacturing settings into large numbers and administrated intra venous to an autologous receiver.
Despite initial successes using both technologies, a myriad of problems remain to be overcome. For example, checkpoint inhibitors as well as engagers induce a high occurrence rate of severe toxicities, additionally, predictions on why some but not all patients respond to specific antibodies cannot yet be made. Cellular therapies are also facing struggles on multiple levels, poor manufacturability due to the source of cells coming from very ill patients, lengthy and very costly manufacturing per se and the lack of predictive strategies to know which patients will benefit from the expensive therapy. Finally, cellular immunotherapy is yet limited to a short list of malignant indications.
Advancements in the field to overcome these adversities focus on enhancing existing technologies to modulate ap T-cells, but increasingly, efforts are expanded to include members of the innate immune system which are capable of orchestrating complete and natural immune responses, involving cells and mechanisms that go beyond the direct mode of action of a therapeutic. Furthermore, innate lymphocytes are often Major Histocompatibility Complex (MHC) un-restricted, allowing for their potential allogeneic use in multiple recipients without causing graft versus host disease (GvHD). Both, antibody and adoptive cell therapies targeting innate cells also show a much lower prevalence for therapy associated toxicities such as cytokine release syndrome (CRS) and neurotoxicity. Candidates for such therapeutics are Natural Killer (NK) cells, induced NK (iNK) cells, macrophages and gamma (y) delta (6) T cells.
Strategies based on the recruitment of cytotoxic NK cells are currently being developed. One such strategy employs multifunctional antibodies called natural killer cell engagers (NKCEs) have been developed, which simultaneously target tumor-associated antigens (TAAs), and activate receptors on endogenous NK cells. A number of NKCEs that are currently in development for clinical
application is reviewed by Demaria et al. (Eur. J. Immunol. 2021 . 51 : 1934-1942). NKCEs are designed to strengthen the interaction between the NK cell and targeted tumor cell and to increase NK cell effector functions towards the tumor cell. However, NK cells in tumors are low in number and of poor functionality (have an exhausted phenotype). NKCE’s developed thus far only address interaction of NK cells with tumor cells and in most cases do not improve their functionality, and in none of the cases improves the NK cell numbers in the tumor.
More recently, WO2024/056862 and WO2024/056861 disclose such multifunctional antigenbinding proteins comprising as NK cell-activating cytokines a 4-1 BB agonist, such as 4-1 BB ligand (4-1 BBL) and an IL-21 receptor agonist, such as IL-21. The multifunctional antigen-binding proteins in these applications can comprise antigen-binding regions that specifically bind to TROP2, for targeting to TROP2-expressing tumor cells. While these multifunctional antigen-binding proteins do address the number, functionality and location of the NK cells, the specificities of the 4-BB agonist and the IL-21 R agonist in these proteins is, however, not yet specific enough for function in the tumor only, potentially causing side effects outside the tumor, e.g. in the periphery.
There is therefore a need in the art for TROP2-targeting treatment modalities that address these issues. It is thus an object of the present invention to provide for such TROP2-targeting treatment modalities.
Description of the invention
Definitions
Various terms relating to the methods, compositions, uses and other aspects of the present invention are used throughout the specification and claims. Such terms are to be given their ordinary meaning in the art to which the invention pertains, unless otherwise indicated. Other specifically defined terms are to be construed in a manner consistent with the definition provided herein. Although any methods and materials similar or equivalent to those described herein can be used in the practice for testing of the present invention, the preferred materials and methods are described herein.
“A,” “an,” and “the”: these singular form terms include plural referents unless the content clearly dictates otherwise. The indefinite article “a” or “an” thus usually means “at least one”. Thus, for example, reference to “a cell” includes a combination of two or more cells, and the like.
“About” and “approximately”: these terms, when referring to a measurable value such as an amount, a temporal duration, and the like, is meant to encompass variations of ±20% or ±10%, more preferably ±5%, even more preferably ±1 %, and still more preferably ±0.1 % from the specified value, as such variations are appropriate to perform the disclosed methods. Additionally, amounts, ratios, and other numerical values are sometimes presented herein in a range format. It is to be understood that such range format is used for convenience and brevity and should be understood flexibly to include numerical values explicitly specified as limits of a range, but also to include all individual numerical values or sub-ranges encompassed within that range as if each numerical value and sub-range is explicitly specified. For example, a ratio in the range of about 1 to about 200
should be understood to include the explicitly recited limits of about 1 and about 200, but also to include individual ratios such as about 2, about 3, and about 4, and sub-ranges such as about 10 to about 50, about 20 to about 100, and so forth.
“And/or”: The term “and/or” refers to a situation wherein one or more of the stated cases may occur, alone or in combination with at least one of the stated cases, up to with all of the stated cases.
“Comprising”: this term is construed as being inclusive and open ended, and not exclusive. Specifically, the term and variations thereof mean the specified features, steps or components are included. These terms are not to be interpreted to exclude the presence of other features, steps or components.
“Exemplary”: this term means “serving as an example, instance, or illustration,” and should not be construed as excluding other configurations disclosed herein.
As used herein “cancer” and “cancerous”, refer to or describe the physiological condition in mammals that is typically characterized by unregulated cell growth. Cancer is also referred to as malignant neoplasm.
As used herein, “in combination with” is intended to refer to all forms of administration that provide a first drug together with a further (second, third) drug. The drugs may be administered simultaneous, separate or sequential and in any order. Drugs administered in combination have biological activity in the subject to which the drugs are delivered.
As used herein “simultaneous” administration refers to administration of more than one drug at the same time, but not necessarily via the same route of administration or in the form of one combined formulation. For example, one drug may be provided orally whereas the other drug may be provided intravenously during a patient’s visit to a hospital. “Separate” includes the administration of the drugs in separate form and/or at separate moments in time, but again, not necessarily via the same route of administration. “Sequential(ly)” indicates that the administration of a first drug is followed, immediately or in time, by the administration of the second drug.
A used herein "compositions", "products" or "combinations" useful in the methods of the present disclosure include those suitable for various routes of administration, including, but not limited to, intravenous, subcutaneous, intradermal, subdermal, intranodal, intratumoral, intramuscular, intraperitoneal, oral, nasal, topical (including buccal and sublingual), rectal, vaginal, aerosol and/or parenteral or mucosal application. The compositions, formulations, and products according to the disclosure invention normally comprise the drugs (alone or in combination) and one or more suitable pharmaceutically acceptable excipients.
As used herein, “an effective amount” is meant the amount of an agent required to ameliorate the symptoms of a disease relative to an untreated patient. The effective amount of active agent(s) used to practice the present invention for therapeutic treatment of a cancer varies depending upon the manner of administration, the age, body weight, and general health of the subject. Ultimately, the attending physician or veterinarian will decide the appropriate amount and dosage regimen. Such amount is referred to as an “effective” amount. Thus, in connection with the administration of a drug which, in the context of the current disclosure, is “effective against” a disease or condition
indicates that administration in a clinically appropriate manner results in a beneficial effect for at least a statistically significant fraction of patients, such as an improvement of symptoms, a cure, a reduction in at least one disease sign or symptom, extension of life, improvement in quality of life, or other effect generally recognized as positive by medical doctors familiar with treating the particular type of disease or condition.
“Sequence identity” is herein defined as a relationship between two or more amino acid (polypeptide or protein) sequences or two or more nucleic acid (polynucleotide) sequences, as determined by comparing the sequences. In the art, “identity” also means the degree of sequence relatedness between amino acid or nucleic acid sequences, as the case may be, as determined by the match between strings of such sequences. “Similarity” between two amino acid sequences is determined by comparing the amino acid sequence and its conserved amino acid substitutes of one polypeptide to the sequence of a second polypeptide. “Identity” and “similarity” can be readily calculated by known methods. The terms “sequence identity” or “sequence similarity” means that two (poly)peptide or two nucleotide sequences, when optimally aligned, preferably over the entire length (of at least the shortest sequence in the comparison) and maximizing the number of matches and minimizes the number of gaps such as by the programs ClustalW (1.83), GAP or BESTFIT using default parameters, share at least a certain percentage of sequence identity as defined elsewhere herein. GAP uses the Needleman and Wunsch global alignment algorithm to align two sequences over their entire length, maximizing the number of matches and minimizes the number of gaps. Generally, the GAP default parameters are used, with a gap creation penalty = 50 (nucleotides) I 8 (proteins) and gap extension penalty = 3 (nucleotides) I 2 (proteins). For nucleotides the default scoring matrix used is nwsgapdna and for proteins the default scoring matrix is BLOSUM62 (Henikoff & Henikoff, 1992, PNAS 89, 915-919). A preferred multiple alignment program for aligning protein sequences of the invention is ClustalW (1 .83) using a BLOSUM matrix and default settings (Gap opening penalty:10; Gap extension penalty: 0.05). Sequence alignments and scores for percentage sequence identity may be determined using computer programs, such as the GCG Wisconsin Package, Version 10.3, available from Accelrys Inc., 9685 Scranton Road, San Diego, CA 92121-3752 USA, or using open source software, such as the program “needle” (using the global Needleman Wunsch algorithm) or “water” (using the local Smith Waterman algorithm) in EmbossWIN version 2.10.0, using the same parameters as for GAP above, or using the default settings (both for ‘needle’ and for ‘water’ and both for protein and for DNA alignments, the default Gap opening penalty is 10.0 and the default gap extension penalty is 0.5; default scoring matrices are BLOSUM62 for proteins and DNAFull for DNA). When sequences have a substantially different overall lengths, local alignments, such as those using the Smith Waterman algorithm, are preferred. Alternatively, percentage similarity or identity may be determined by searching against public databases, using algorithms such as FASTA, BLAST, etc.
Optionally, in determining the degree of amino acid similarity, the skilled person may also take into account so-called “conservative” amino acid substitutions, as will be clear to the skilled person. Conservative amino acid substitutions refer to the interchangeability of residues having
similar side chains. Examples of classes of amino acid residues for conservative substitutions are given in the Tables below.
Alternative conservative amino acid residue substitution classes.
Alternative physical and functional classifications of amino acid residues.
The term "agent" refers generally to any entity which is normally not present or not present at the levels being administered to a cell, tissue or subject. An agent can be a compound or a composition. An agent can e.g. be selected from the group consisting of: polynucleotides, polypeptides, small molecules, (multispecific) antigen binding proteins, such as antibodies and functional fragments thereof.
The term "antigen-binding domain" or "antigen-binding region" refers to the portion of an antigen-binding protein that is capable of specifically binding to an antigen or epitope. In one embodiment, the antigen-binding region is an immunoglobulin-derived antigen-binding region, e.g. comprising both an antibody light chain variable region (VL) and an antibody heavy chain variable region (VH). Examples of such antigen-binding regions include single-chain Fv (scFv), single-chain antibody, Fv, single-chain Fv2 (scFv2), Fab, and Fab'. In one embodiment, the antigen-binding region is an immunoglobulin-derived antigen-binding region from a single domain antibody consisting only of heavy chains and devoid of light chains as are known e.g. from camelids, wherein the antigen-binding site is present on, and formed by, the single variable domain (also referred to as an "immunoglobulin single variable domain" or "ISVD"). Examples of such ISVDs include the single variable domains of camelid heavy chain antibodies (VHHS), also referred to as nanobodies, domain antibodies (dAbs), and single domains derived from shark antibodies (IgNAR domains). In other embodiments, an antigen-binding region comprises a non-immunoglobulin-derived domain capable of specifically binding to an antigen or epitope, such as DARPpins; Affilins; anticalins, etc.
The term "antibody" herein is used in the broadest sense and specifically includes full-length monoclonal antibodies, polyclonal antibodies, multispecific antibodies (e.g. bispecific antibodies), and antibody fragments and derivatives, so long as they exhibit the desired biological and/or immunological activity. Various techniques relevant to the production of antibodies are provided in, e.g., Harlow, et al.. Antibodies: A Laboratory Manual, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y., (1988). An antibody can be human and/or humanized. "Humanized" forms of non-human (e.g., rodent) antibodies are chimeric antibodies that contain minimal sequence derived from the non-human antibody.
The terms "full length antibody", "intact antibody", and "whole antibody" are used herein interchangeably to refer to an antibody having a structure substantially similar to a native antibody structure. "Native antibodies" refer to naturally occurring immunoglobulin molecules with varying structures. For example, native IgG-class antibodies are heterotetrameric glycoproteins of about 150,000 daltons, composed of two light chains and two heavy chains that are disulfide-bonded. From N- to C-terminus, each heavy chain has a variable region (VH), also called a variable heavy domain or a heavy chain variable domain, followed by three constant domains (CH1 , CH2, and CH3), also called a heavy chain constant region. Similarly, from N- to C-terminus, each light chain has a variable region (VL), also called a variable light domain or a light chain variable domain, followed by a light chain constant domain (CL), also called a light chain constant region. The heavy chain of an antibody may be assigned to one of five types, called a (IgA), 6 (IgD), s (IgE), y (IgG), or m (IgM), some of which may be further divided into subtypes, e.g. y1 (lgG1), y2 (lgG2), y3 (lgG3), y4 (lgG4), a1 (lgA1) and a2 (lgA2). The light chain of an antibody may be assigned to one of two types, called kappa (K) and lambda (A), based on the amino acid sequence of its constant domain.
An "antibody fragment" comprises a portion of a full-length antibody, e.g. the antigen-binding or variable regions thereof. Examples of antibody fragments include Fab, Fab', F(ab)2, F(ab’)2, F(ab)s, Fv (typically the VH and VL domains of a single arm of an antibody), single-chain Fv (scFv), dsFv, Fd fragments (typically the VH and CH1 domain), and dAb (typically a VH domain) fragments;
VH, VL, VHH, and V-NAR domains; minibodies, diabodies, triabodies, tetrabodies, and kappa bodies (see, e.g.. Ill et al.. Protein Eng 1997;10: 949-57); camel IgG; IgNAR; and multispecific antibody fragments formed from antibody fragments, and one or more isolated CDRs or a functional paratope, where isolated CDRs or antigen-binding residues or polypeptides can be associated or linked together so as to form a functional antibody fragment. For a review of certain antibody fragments, see Hudson et al., Nat Med 9, 129-134 (2003). For a review of scFv fragments, see e.g. Pluckthun, in The Pharmacology of Monoclonal Antibodies, vol. 113, Rosenburg and Moore eds., Springer- Verlag, N.Y., pp. 269-315 (1994); see also WO 93/16185; and U.S. Patent Nos. 5,571 ,894 and 5,587,458. For discussion of Fab and F(ab’)2 fragments comprising salvage receptor binding epitope residues and having increased in vivo half-life, see U.S. Patent No. 5,869,046. Diabodies are antibody fragments with two antigen-binding sites that may be bivalent or bispecific, see, for example, EP 404,097; WO 1993/01161 ; Hudson et al., Nat Med 9, 129-134 (2003); and Hollinger et al., Proc Natl Acad Sci USA 90, 6444-6448 (1993). Triabodies and tetrabodies are also described in Hudson et al., Nat Med 9, 129-134 (2003). Various types of antibody fragments have been described or reviewed in, e.g.. Heiliger and Hudson, Nat Biotechnol 2005; 23, 1126-1136; W02005/040219, US20050238646 and US20020161201 . Antibody fragments can be made by various techniques, including but not limited to proteolytic digestion of an intact antibody as well as production by recombinant host cells (e.g. CHO, E. coli or phage), as described herein.
The term "monoclonal antibody" as used herein is not limited to antibodies produced through hybridoma technology. The term "monoclonal antibody" refers to an antibody that is derived from a single clone, including any eukaryotic, prokaryotic, or phage clone, and not the method by which it is produced. Monoclonal antibodies can be prepared using a wide variety of techniques known in the art including the use of hybridoma, recombinant, and phage display technologies, or a combination thereof. For example, monoclonal antibodies can be produced using hybridoma techniques including those known in the art and taught, for example, in Harlow and Lane, "Antibodies: A Laboratory Manual," Cold Spring Harbor Laboratory Press, N.Y. (1988); Hammerling et al., in: "Monoclonal Antibodies and T-Cell Hybridomas," Elsevier, N.Y. (1981), pp. 563-681 (both of which are incorporated herein by reference in their entireties).
The term "monospecific" antibody as used herein denotes that the antibody-part of a conjugate comprising antigen binding-regions as described herein, has one or more antigen-binding sites each of which bind to the same epitope of the same antigen. The term "bispecific" means that the antibody-part of a conjugate as described herein, has at least two antigen-binding sites that are able to specifically bind to at least two distinct antigenic determinants. Typically, a bispecific antigen binding molecule comprises two antigen-binding sites, each of which is specific for a different antigenic determinant. In certain embodiments the bispecific antigen binding molecule is capable of simultaneously binding two antigenic determinants, particularly two antigenic determinants expressed on two distinct cells.
The term "valent" or "valency" as used within the current application denotes the presence of a specified number of binding sites or number of ligands in an antigen binding molecule or conjugate described herein. As such, the terms "bivalent", "tetravalent", and "hexavalent" denote
the presence of two, four, and six binding sites or ligands, respectively, in an antigen binding molecule or conjugate.
An antibody immunologically reactive with a particular antigen can be generated by recombinant methods such as selection of libraries of recombinant antibodies in phage or similar vectors, see, e.g., Huse et al., Science 246:1275-1281 (1989); Ward et al., Nature 341 :544-546 (1989); and Vaughan et al., Nature Biotech. 14:309-314 (1996), or by immunizing an animal with the antigen or with DNA encoding the antigen. Methods for producing and screening for specific antibodies using hybridoma technology are routine and well known in the art. In a non-limiting example, mice can be immunized with an antigen of interest or a cell expressing such an antigen. Once an immune response is detected, e.g., antibodies specific for the antigen are detected in the mouse serum, the mouse spleen is harvested and splenocytes isolated. The splenocytes are then fused by well-known techniques to any suitable myeloma cells. Hybridomas are selected and cloned by limiting dilution. The hybridoma clones are then assayed by methods known in the art for cells that secrete antibodies capable of binding the antigen. Ascites fluid, which generally contains high levels of antibodies, can be generated by inoculating mice intraperitoneally with positive hybridoma clones.
Typically, an immunoglobulin has a heavy and light chain. Each heavy and light chain contains a constant region and a variable region, (the regions are also known as "domains"). Light and heavy chain variable regions contain four "framework" regions interrupted by three hypervariable regions, also called "complementarity-determining regions" or "CDRs". The sequences of the framework regions of different light or heavy chains are relatively conserved within a species. The framework region of an antibody, which is the combined framework regions of the constituent light and heavy chains, serves to position and align the CDRs in three-dimensional space.
The term "hypervariable region" when used herein refers to the amino acid residues of an antibody that are responsible for antigen binding. The hypervariable region generally comprises amino acid residues from a "complementarity-determining region" or "CDR" (e.g. residues 24-34 (L1), 50-56 (L2) and 89-97 (L3) in the light-chain variable domain and 31-35 (H1), 50-65 (H2) and 95-102 (H3) in the heavy-chain variable domain; Kabat et al. 1991 , Sequences of Proteins of Immunological Interest, 5th Ed. Public Health Service, National Institutes of Health, Bethesda, MD, USA) and/or those residues from a "hypervariable loop" (e.g. residues 26-32 (L1), 50-52 (L2) and 91-96 (L3) in the light-chain variable domain and 26-32 (H1), 53-55 (H2) and 96-101 (H3) in the heavy-chain variable domain; Chothia and Lesk, J. Mol. Biol 1987;196:901-917). Typically, the numbering of amino acid residues in this region is performed by the method described in Kabat et al., supra. Phrases such as “Kabat position”, "variable domain residue numbering as in Kabat" and "according to Kabat" herein refer to this numbering system for heavy chain variable domains or light chain variable domains. Using the Kabat numbering system, the actual linear amino acid sequence of a peptide may contain fewer or additional amino acids corresponding to a shortening of, or insertion into, an FR or CDR of the variable domain. For example, a heavy chain variable domain may include a single amino acid insert (residue 52a according to Kabat) after residue 52 of CDR
H2 and inserted residues (e.g. residues 82a, 82b, and 82c, etc. according to Kabat) after heavy chain FR residue 82. The Kabat numbering of residues may be determined for a given antibody by alignment at regions of homology of the sequence of the antibody with a "standard" Kabat numbered sequence.
The term "framework" or "FR" residues as used herein refers to the region of an antibody variable domain exclusive of those regions defined as CDRs. Each antibody variable domain framework can be further subdivided into the contiguous regions separated by the CDRs (FR1 , FR2, FR3 and FR4).
The term "constant region" as defined herein refers to an antibody-derived constant region that is encoded by one of the light or heavy chain immunoglobulin constant region genes. By "constant light chain" or "light chain constant region" as used herein is meant the region of an antibody encoded by the kappa (Ck) or lambda (CA) light chains. The constant light chain typically comprises a single domain, and as defined herein refers to positions 108-214 of CK or CA, wherein numbering is according to the EU index (Kabat et al., 1991 , supra).
The term "constant heavy chain" or "heavy chain constant region" as used herein refers to the region of an antibody encoded by the mu, delta, gamma, alpha, or epsilon genes to define the antibody's isotype as IgM, IgD, IgG, IgA, or IgE, respectively. For full length IgG antibodies, the constant heavy chain, as defined herein, refers to the N-terminus of the CH1 domain to the C- terminus of the CH3 domain, thus comprising positions 118-447, wherein numbering is according to the EU index.
Papain digestion of intact antibodies produces two identical antigen-binding fragments, called "Fab" fragments containing each the heavy- and light-chain variable domains and also the constant domain of the light chain and the first constant domain (CH1) of the heavy chain. "Fab" fragments can also be recombinantly produced by methods known in the art. As used herein, Thus, the term "Fab fragment" " or "Fab region" refers to an antibody fragment comprising a light chain fragment comprising a VL domain and a constant domain of a light chain (CL), and a VH domain and a first constant domain (CH1) of a heavy chain. Fab may refer to this region in isolation, or this region in the context of a polypeptide, conjugate or antigen-binding region, or any other embodiments as outlined herein. Fab’ fragments differ from Fab fragments by the addition of a few residues at the carboxy terminus of the heavy chain CH1 domain including one or more cysteines from the antibody hinge region. Fab’-SH are Fab’ fragments in which the cysteine residue(s) of the constant domains bear a free thiol group. Pepsin treatment yields an F(ab’)2 fragment that has two antigen-combining sites (two Fab fragments) and a part of the Fc region.
The term "single-chain Fv" or "scFv" as used herein refers to antibody fragments comprising the VH and VL domains of an antibody, wherein these domains are present in a single polypeptide chain. Generally, the Fv polypeptide further comprises a polypeptide linker between the VH and VL domains which enables the scFv to form the desired structure for antigen binding. Methods for producing scFvs are well known in the art. For a review of methods for producing scFvs see Pluckthun in The Pharmacology of Monoclonal Antibodies, vol. 113, Rosenburg and Moore eds. Springer-Verlag, N.Y., pp. 269-315 (1994).
Scaffold antigen-binding proteins" are known in the art, for example, fibronectin and designed ankyrin repeat proteins (DARPins) have been used as alternative scaffolds for antigenbinding domains, see, e.g., Gebauer and Skerra, Engineered protein scaffolds as next-generation antibody therapeutics. Curr Opin Chem Biol 13:245-255 (2009) and Stumpp et al., Darpins: A new generation of protein therapeutics. Drug Discovery Today 13: 695-701 (2008). In one aspect of the invention, a scaffold antigen-binding protein is selected from the group consisting of CTLA-4 (Evibody), Lipocalins (Anticalin), monobodies, centyrins, kunitz domains, knottins, fynomers, lipocalins, a Protein A-derived molecule such as Z-domain of Protein A (Affibody), an A-domain (Avimer/Maxibody), a serum transferrin (frans-body); a designed ankyrin repeat protein (DARPin), a variable domain of antibody light chain or heavy chain (single-domain antibody, sdAb), a variable domain of antibody heavy chain (nanobody, aVH), VNAR fragments, a fibronectin (AdNectin), a C- type lectin domain (Tetranectin); a variable domain of a new antigen receptor beta-lactamase (VNAR fragments), a human gamma-crystallin or ubiquitin (Affilin molecules); a Kunitz type domain of human protease inhibitors, microbodies such as the proteins from the knottin family, peptide aptamers and fibronectin (adnectin).
CTLA-4 (Cytotoxic T Lymphocyte-associated Antigen 4) is a CD28-family receptor expressed on mainly CD4+ T-cells. Its extracellular domain has a variable domain- like Ig fold. Loops corresponding to CDRs of antibodies can be substituted with heterologous sequence to confer different binding properties. CTLA-4 molecules engineered to have different binding specificities are also known as Evibodies (e.g. US7166697B1). Evibodies are around the same size as the isolated variable region of an antibody (e.g. a domain antibody). For further details see Journal of Immunological Methods 248 (1-2), 31-45 (2001).
Lipocalins are a family of extracellular proteins which transport small hydrophobic molecules such as steroids, bilins, retinoids and lipids. They have a rigid beta-sheet secondary structure with a number of loops at the open end of the conical structure which can be engineered to bind to different target antigens. Anticalins are between 160-180 amino acids in size and are derived from lipocalins. For further details see Biochim Biophys Acta 1482: 337-350 (2000), US7250297B1 and US20070224633.
An affibody is a scaffold derived from Protein A of Staphylococcus aureus which can be engineered to bind to antigen. The domain consists of a three-helical bundle of approximately 58 amino acids. Libraries have been generated by randomization of surface residues. For further details see Protein Eng. Des. Sei. 17, 455-462 (2004) and EP1641818A1 .
Avimers are multidomain proteins derived from the A-domain scaffold family. The native domains of approximately 35 amino acids adopt a defined disulfide bonded structure. Diversity is generated by shuffling of the natural variation exhibited by the family of A-domains. For further details see Nature Biotechnology 23(12), 1556 - 1561 (2005) and Expert Opinion on Investigational Drugs 16(6), 909-917 (June 2007).
A transferrin is a monomeric serum transport glycoprotein. Transferrins can be engineered to bind different target antigens by insertion of peptide sequences in a permissive surface loop.
Examples of engineered transferrin scaffolds include the Trans-body. For further details see J. Biol. Chem 274, 24066-24073 (1999).
Designed Ankyrin Repeat Proteins (DARPins) are derived from Ankyrin which is a family of proteins that mediate attachment of integral membrane proteins to the cytoskeleton. A single ankyrin repeat is a 33-residue motif consisting of two alpha-helices and a beta-turn. They can be engineered to bind different target antigens by randomizing residues in the first alpha-helix and a beta-turn of each repeat. Their binding interface can be increased by increasing the number of modules (a method of affinity maturation). For further details see J. Mol. Biol. 332, 489-503 (2003), PNAS 100(4), 1700-1705 (2003) and J. Mol. Biol. 369, 1015-1028 (2007) and US20040132028A1 .
A single-domain antibody is an antibody fragment consisting of a single monomeric variable antibody domain. The first single variable domains were derived from the variable domain of the antibody heavy chain from camelids (nanobodies or VHH fragments). Furthermore, the term single variable domain antibody includes an autonomous human heavy chain variable domain (aVH) or VNAR fragments derived from sharks.
Fibronectin is a scaffold which can be engineered to bind to antigen. Adnectins consists of a backbone of the natural amino acid sequence of the 10th domain of the 15 repeating units of human fibronectin type III (FN3). Three loops at one end of the p-sandwich can be engineered to enable an Adnectin to specifically recognize a therapeutic target of interest. For further details see Protein Eng. Des. Sei. 18, 435- 444 (2005), US20080139791 , W02005056764 and US6818418B1.
Peptide aptamers are combinatorial recognition molecules that consist of a constant scaffold protein, typically thioredoxin (TrxA) which contains a constrained variable peptide loop inserted at the active site. For further details see Expert Opin. Biol. Ther. 5, 783-797 (2005).
Microbodies are derived from naturally occurring microproteins of 25-50 amino acids in length which contain 3-4 cysteine bridges - examples of microproteins include KalataBI and conotoxin and knottins. The microproteins have a loop which can be engineered to include up to 25 amino acids without affecting the overall fold of the microprotein. For further details of engineered knottin domains, see W02008098796.
The term "Fv" or "Fv fragment" or "Fv region" as used herein refers to a polypeptide that comprises the VH and VL domains of a single antibody.
The term "Fc" or "Fc region", as used herein refers to the polypeptide comprising the constant region of an antibody excluding the first constant region immunoglobulin domain. Fc may refer to this region in isolation, or this region in the context of an Fc polypeptide, as described below. By "Fc polypeptide" or “Fc-derived polypeptide” as used herein is meant a polypeptide that comprises all or part of an Fc region. Fc polypeptides herein include but are not limited to antibodies, Fc fusions and Fc fragments. Also, Fc regions according to the invention include variants containing at least one modification that alters (enhances or diminishes) an Fc associated effector function. Also, Fc regions according to the invention include chimeric Fc regions comprising different portions or domains of different Fc regions, e.g., derived from antibodies of different isotype or species. Fc thus refers to the last two constant region immunoglobulin domains of IgA, IgD, and IgG, and the last three constant region immunoglobulin domains of IgE and IgM, and the flexible hinge N-terminal to
these domains. For IgA and IgM, Fc may include the J chain. For IgG, Fc comprises immunoglobulin domains Cy2 (CH2) and Cy 3 (CH3) and the hinge between Cy 1 and Cy 2. Although the boundaries of the Fc region may vary, the human IgG heavy chain Fc region is usually defined to comprise residues C226, P230 or A231 to its carboxyl-terminus, wherein the numbering is according to the EU index. The "CH2 domain" of a human IgG Fc region usually extends from an amino acid residue at about position 231 to an amino acid residue at about position 340. In one embodiment, a carbohydrate chain is attached to the CH2 domain. The CH2 domain herein may be a native sequence CH2 domain or variant CH2 domain. The "CH3 domain" comprises the stretch of residues C-terminal to a CH2 domain in an Fc region (i.e. from an amino acid residue at about position 341 to an amino acid residue at about position 447 of an IgG). The CH3 region herein may be a native sequence CH3 domain or a variant CH3 domain (e.g. a CH3 domain with an introduced "protuberance" ("knob") in one chain thereof and a corresponding introduced "cavity" ("hole") in the other chain thereof; see US Patent No. 5,821 ,333, expressly incorporated herein by reference). Such variant CH3 domains may be used to promote heterodimerization of two non-identical antibody heavy chains as herein described. In one embodiment, a human IgG heavy chain Fc region extends from Cys226, or from Pro230, to the carboxyl-terminus of the heavy chain. However, the C-terminal lysine (Lys447) of the Fc region may or may not be present. Unless otherwise specified herein, numbering of amino acid residues in the Fc region or constant region is according to the EU numbering system, also called the EU index, as described in Kabat et al., Sequences of Proteins of Immunological Interest, 5th Ed. Public Health Service, National Institutes of Health, Bethesda, MD, 1991 .
The "knob-into-hole" technology is described e.g. in US 5,731 ,168; US 7,695,936; Ridgway et al., Prot Eng 9, 617-621 (1996) and Carter, J Immunol Meth 248, 7-15 (2001). Generally, the method involves introducing a protuberance ("knob") at the interface of a first polypeptide and a corresponding cavity ("hole") in the interface of a second polypeptide, such that the protuberance can be positioned in the cavity so as to promote heterodimer formation and hinder homodimer formation. Protuberances are constructed by replacing small amino acid side chains from the interface of the first polypeptide with larger side chains (e.g. tyrosine or tryptophan). Compensatory cavities of identical or similar size to the protuberances are created in the interface of the second polypeptide by replacing large amino acid side chains with smaller ones (e.g. alanine or threonine). The protuberance and cavity can be made by altering the nucleic acid encoding the polypeptides, e.g. by site-specific mutagenesis, or by peptide synthesis. In a specific embodiment a knob modification comprises the amino acid substitution T366W in one of the two subunits of the Fc region, and the hole modification comprises the amino acid substitutions T366S, L368A and Y407V in the other one of the two subunits of the Fc domain. In a further specific embodiment, the subunit of the Fc region comprising the knob modification additionally comprises the amino acid substitution S354C, and the subunit of the Fc region comprising the hole modification additionally comprises the amino acid substitution Y349C. Introduction of these two cysteine residues results in the formation of a disulfide bridge between the two subunits of the Fc region, thus further stabilizing the dimer (Carter, J Immunol Methods 248, 7-15 (2001)). The numbering is according to EU index of
Kabat et al, Sequences of Proteins of Immunological Interest, 5th Ed. Public Health Service, National Institutes of Health, Bethesda, MD, 1991.
A "region equivalent to the Fc region of an immunoglobulin" is intended to include naturally occurring allelic variants of the Fc region of an immunoglobulin as well as variants having alterations which produce substitutions, additions, or deletions but which do not decrease substantially the ability of the immunoglobulin to mediate effector functions (such as antibody-dependent cellular cytotoxicity). For example, one or more amino acids can be deleted from the N-terminus or C- terminus of the Fc region of an immunoglobulin without substantial loss of biological function. Such variants can be selected according to general rules known in the art so as to have minimal effect on activity (see, e.g., Bowie, J. U. et al., Science 247:1306-10 (1990)).
The term "effector functions" refers to those biological activities attributable to the Fc region of an antibody, which vary with the antibody isotype. Examples of antibody effector functions include: C1q binding and complement dependent cytotoxicity (CDC), Fc receptor binding, antibodydependent cell-mediated cytotoxicity (ADCC), antibody-dependent cellular phagocytosis (ADCP), cytokine secretion, immune complex-mediated antigen uptake by antigen presenting cells, down regulation of cell surface receptors (e.g. B cell receptor), and B cell activation.
An "activating Fc receptor" is an Fc receptor that following engagement by an Fc region of an antibody elicits signaling events that stimulate the receptor-bearing cell to perform effector functions. Activating Fc receptors include FcyRllla (CD16a), FcyRI (CD64), FcyRlla (CD32), and FcaRI (CD89). A particular activating Fc receptor is human FcyRllla (see UniProt accession no. P08637, version 141), also referred to as CD16 or CD16A. In humans, CD16 consists of two isoforms, CD16A and CD16B, encoded by two highly homologous genes. CD16A is a transmembrane protein expressed by lymphocytes and some monocytes, whereas CD16B is linked to the plasma membrane via a GPI anchor and primarily expressed by neutrophils. Therefore, when reference is made herein to CD16 in the context of expression on NK cells herein, usually CD16A is meant unless otherwise indicated.
By "variable region" as used herein is meant the region of an antibody that comprises one or more Ig domains substantially encoded by any of the VL (including VK and VA) and/or VH genes that make up the light chain (including K and A) and heavy chain immunoglobulin genetic loci respectively. A light or heavy chain variable region (VL or VH) comprise four conserved framework regions (FRs) and three hypervariable regions (HVRs). See, e.g., Kindt et al., Kuby Immunology, 6th ed., W.H. Freeman and Co., page 91 (2007). A single VH or VL domain may be sufficient to confer antigen-binding specificity.
The term "hypervariable region" or "HVR," as used herein refers to each of the regions of an antibody variable domain which are hypervariable in sequence and/or form structurally defined loops ("hypervariable loops"). Generally, native four-chain antibodies comprise six HVRs; three in the VH (H1 , H2, H3), and three in the VL (L1 , L2, L3). HVRs generally comprise amino acid residues from the hypervariable loops and/or from the "complementarity determining regions" (CDRs), the latter being of highest sequence variability and/or involved in antigen recognition. Exemplary hypervariable loops occur at amino acid residues 26-32 (L1), 50-52 (L2), 91-96 (L3), 26-32 (HI), 53-
55 (H2), and 96-101 (H3). (Chothia and Lesk, J. Mol. Biol. 196:901-917 (1987).) Exemplary CDRs (CDR-L1 , CDR-L2, CDR-L3, CDR-H1 , CDR-H2, and CDR-H3) occur at amino acid residues 24-34 of L1 , 50-56 of L2, 89-97 of L3, 31-35B of H1 , 50-65 of H2, and 95-102 of H3. (Kabat et al., Sequences of Proteins of Immunological Interest, 5th Ed. Public Health Service, National Institutes of Health, Bethesda, MD (1991).) Hypervariable regions (HVRs) are also referred to as complementarity determining regions (CDRs), and these terms are used herein interchangeably in reference to portions of the variable region that form the antigen-binding regions. This particular region has been described by Kabat et al., U.S. Dept, of Health and Human Services, "Sequences of Proteins of Immunological Interest" (1983) and by Chothia et al., J. Mol. Biol. 196:901-917 (1987), where the definitions include overlapping or subsets of amino acid residues when compared against each other. Nevertheless, application of either definition to refer to a CDR of an antibody or variants thereof is intended to be within the scope of the term as defined and used herein. The appropriate amino acid residues which encompass the CDRs as defined by each of the above cited references are set forth below in Table A as a comparison. The exact residue numbers which encompass a particular CDR will vary depending on the sequence and size of the CDR. Those skilled in the art can routinely determine which residues comprise a particular CDR given the variable region amino acid sequence of the antibody.
Table A. CDR defintions1
Kabat et al. also defined a numbering system for variable region sequences that is applicable to any antibody. One of ordinary skill in the art can unambiguously assign this system of "Kabat numbering" to any variable region sequence, without reliance on any experimental data beyond the sequence itself. As used herein, "Kabat numbering" refers to the numbering system set forth by Kabat et al., U.S. Dept, of Health and Human Services, "Sequence of Proteins of Immunological Interest" (1983). Unless otherwise specified, references to the numbering of specific amino acid residue positions in an antibody variable region are according to the Kabat numbering system.
With the exception of CDR1 in VH, CDRs generally comprise the amino acid residues that form the hypervariable loops. CDRs also comprise "specificity determining residues," or "SDRs,"
which are residues that contact antigen. SDRs are contained within regions of the CDRs called abbreviated-CDRs, or a-CDRs. Exemplary a-CDRs (a-CDR-L1 , a-CDRL2, a-CDR-L3, a-CDR-H1 , a-CDR-H2, and a-CDR-H3) occur at amino acid residues 31-34 of L1 , 50-55 of L2, 89-96 of L3, 31- 35B of H1 , 50-58 of H2, and 95-102 of H3. (See Almagro and Fransson, Front. Biosci. 13:1619- 1633 (2008).) Unless otherwise indicated, HVR residues and other residues in the variable domain (e.g., FR residues) are numbered herein according to Kabat et al., supra.
As used herein, the term "affinity matured" in the context of antigen binding molecules (e.g., antibodies) refers to an antigen-binding molecule that is derived from a reference antigen-binding molecule, e.g., by mutation, binds to the same antigen, preferably binds to the same epitope, as the reference antibody; and has a higher affinity for the antigen than that of the reference antigenbinding molecule. Affinity maturation generally involves modification of one or more amino acid residues in one or more CDRs of the antigen-binding molecule. Typically, the affinity matured antigen-binding molecule binds to the same epitope as the initial reference antigen-binding molecule.
The "class" of an antibody refers to the type of constant domain or constant region possessed by its heavy chain. There are five major classes of antibodies: IgA, IgD, IgE, IgG, and IgM, and several of these may be further divided into subclasses (isotypes), e.g. lgG1 , lgG2, lgG3, lgG4, lgA1 , and lgA2. The heavy chain constant domains that correspond to the different classes of immunoglobulins are called a, 6, s, y, and m respectively.
A "blocking" antibody or an "antagonist" antibody is one which inhibits or reduces biological activity of the antigen it binds. Preferred blocking antibodies or antagonist antibodies substantially or completely inhibit the biological activity of the antigen. An "agonist antibody", as used herein, is an antibody which mimics at least one of the functional activities of a polypeptide of interest.
The term "specifically binds" refers to the number of different types of antigens or antigenic determinants to which a particular antigen-binding region or antigen-binding protein can bind. The specificity of an antigen-binding protein can be determined based on affinity and/or avidity. The affinity, represented by the equilibrium constant for the dissociation of an antigen with an antigenbinding protein (KD), is a measure for the binding strength between an antigenic determinant and an antigen-binding site on the antigen-binding protein. Alternatively, the affinity can also be expressed as the affinity constant (KA), which is 1/KD. Affinity can be determined in a manner known per se, depending on the specific combination of antigen-binding protein and antigen of interest. Avidity is herein understood to refer to the strength of binding of a target molecule with multiple binding sites by a larger complex of binding agents, i.e. the strength of binding of multivalent binding. Avidity is related to both the affinity between an antigenic determinant and its antigen-binding site on the antigen-binding protein and the valency, i.e. the number of binding sites present on the antigen-binding protein. Affinity, on the other hand refers to simple monovalent receptor ligand systems.
Typically, an antigen-binding region of a conjugate of the invention thereof will specifically bind its target molecule (antigen) with a dissociation constant (KD) of about 10-6 to 10-12 M or less, and preferably 10-8 to 10-12 M or less, and/or with a binding affinity of at least 10-6 M or 10-7 M,
preferably at least 10-8 M, more preferably at least 10-9 M, such as at least 1 O-10, 10’11, 10-12 M or less. Any KD value greater than 10-4 M (i.e. less than 100 pM) is generally considered to indicate non-specific binding. Thus, an antigen-binding region that “specifically binds” an antigen, is an antigen-binding domain that binds the antigen with a KD value of no more than 10-4 M, as may be determined as herein described below. Preferably, an antigen-binding region of a conjugate of the invention will specifically bind to the target molecule with an affinity less than 800, 400, 200, 100 50, 10 or 5 nM, more preferably less than 1 nM, such as less than 500, 200, 100, 50, 10 or 5 pM. A variety of methods of measuring binding affinity are known in the art, any of which can be used for purposes of the present invention (see e.g. Harlow, et al., Antibodies: A Laboratory Manual, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y., 1988), Coligan et al., eds.. Current Protocols in Immunology, Greene Publishing Assoc, and Wiley Interscience, N.Y., (1992, 1993), and Muller, Meth. Enzymol. 92:589-601 (1983)). Specific illustrative embodiments are described in the following.
A "KD" or "KD value" can be measured by using an ELISA as described in the Examples herein or by using surface plasmon resonance assays using a BIAcore™-2000 or a BIAcore ™- 3000 (BIAcore, Inc., Piscataway, NJ) In an exemplary method, carboxymethylated dextran biosensor chips (CM5, BIAcore Inc.) are activated with N-ethyl-N’-(3-dimethylaminopropyl)- carbodiimide hydrochloride (EDC) and N-hydroxysuccinimide (NHS) according to the supplier’s instructions. Antigen is diluted with 10mM sodium acetate, pH 4.8, into 5 pg/ml (~0.2 pM) before injection at a flow rate of 5 pl/minute to achieve approximately 10 response units (RU) of coupled protein. Following the injection of antigen, 1 M ethanolamine is injected to block unreacted groups. For kinetics measurements, two-fold serial dilutions of the antibody or Fab (0.78 nM to 500 nM) are injected in PBS with 0.05% Tween 20 (PBST) at 25°C at a flow rate of approximately 25pl/min. Association rates (kon) and dissociation rates (kotr) are calculated using a simple one-to-one Langmuir binding model (BIAcore Evaluation Software version 3.2) by simultaneous fitting the association and dissociation sensogram. The equilibrium dissociation constant (KD) is calculated as the ratio koff/kon. See, e.g., Chen, Y., et al., (1999) J. Mol Biol 293:865-881 . If the on-rate exceeds 106 M-1 S-1 by the surface plasmon resonance assay above, then the on-rate can be determined by using a fluorescent quenching technique that measures the increase or decrease in fluorescence emission intensity (excitation = 295 nm; emission = 340 nm, 16 nm band-pass) at 25°C of a 20nM anti-antigen antibody (Fab form) in PBS, pH 7.2, in the presence of increasing concentrations of antigen as measured in a spectrometer, such as a stop-flow equipped spectrophotometer (Aviv Instruments) or a 8000-series SLM-Aminco spectrophotometer (ThermoSpectronic) with a stir red cuvette.
The term "humanized antibody" or "humanized immunoglobulin" refers to an immunoglobulin comprising a human framework, at least one and preferably all complementarity determining regions (CDRs) from a non-human antibody, and in which any constant region present is substantially identical to a human immunoglobulin constant region, i.e., at least about 85%, at least 90%, and at least 95% identical. Hence, all parts of a humanized immunoglobulin, except possibly the CDRs, are substantially identical to corresponding parts of one or more native human
immunoglobulin sequences. Often, framework residues in the human framework regions will be substituted with the corresponding residue from the CDR donor antibody to alter, preferably improve, antigen binding. These framework substitutions are identified by methods well known in the art, e.g., by modeling of the interactions of the CDR and framework residues to identify framework residues important for antigen binding and sequence comparison to identify unusual framework residues at particular positions. See, e.g., Queen et al., U.S. Pat. Nos. 5,530,101 ; 5,585,089; 5,693,761 ; 5,693,762; 6,180,370 (each of which is incorporated by reference in its entirety). Antibodies can be humanized using a variety of techniques known in the art including, for example, CDR-grafting (EP 239,400; PCT publication WO 91/09967; U.S. Pat. Nos. 5,225,539; 5,530,101 and 5,585,089), veneering or resurfacing (EP 592,106; EP 519,596; Padlan, Mol. Immunol., 28:489 498 (1991); Studnicka et al., Prot. Eng. 7:805 814 (1994); Roguska et al., Proc. Natl. Acad. Sci. 91 :969 973 (1994), and chain shuffling (U.S. Pat. No. 5,565,332), all of which are hereby incorporated by reference in their entireties.
One class of antigen-binding regions for use in the invention comprises immunoglobulin single variable domains (ISVDs) with an amino acid sequence that corresponds to the amino acid sequence of a naturally occurring single variable domain, but that has been "humanized", i.e. by replacing one or more amino acid residues in the amino acid sequence of said naturally occurring single variable domain sequence by one or more of the amino acid residues that occur at the corresponding positions) in a VH domain from a conventional 4-chain antibody from a human being. This can be performed in a manner known per se, which will be clear to the skilled person, for example on the basis of the prior art on humanization including e.g. Jones et al. (Nature 321 :522- 525, 1986); Riechmann et al., (Nature 332:323-329, 1988); Presta (Curr. Op. Struct. Biol. 2:593- 596, 1992), Vaswani and Hamilton (Ann. Allergy, Asthma and Immunol., 1 :105-115 1998); Harris (Biochem. Soc. Transactions, 23:1035-1038, 1995); Hurle and Gross (Curr. Op. Biotech., 5:428- 433, 1994), and specific prior art relating to humanization of VHHS such as e.g. Vincke et al. (2009, J. Biol. Chem. 284:3273-3284). Again, it should be noted that such humanized single variable domains of the invention can be obtained in any suitable manner known per se and thus are not strictly limited to polypeptides that have been obtained using a polypeptide that comprises a naturally occurring single variable domain as a starting material.
"Framework" or "FR" refers to variable domain residues other than hypervariable region (HVR) residues. The FR of a variable domain generally consists of four FR domains: FR1 , FR2, FR3, and FR4. Accordingly, the HVR and FR sequences generally appear in the following sequence in VH (or VL): FR1-H1 (L1)-FR2-H2(L2)-FR3-H3(L3)-FR4.
An "acceptor human framework" for the purposes herein is a framework comprising the amino acid sequence of a light chain variable domain (VL) framework or a heavy chain variable domain (VH) framework derived from a human immunoglobulin framework or a human consensus framework, as defined below. An acceptor human framework "derived from" a human immunoglobulin framework or a human consensus framework may comprise the same amino acid sequence thereof, or it may contain amino acid sequence changes. In some embodiments, the number of amino acid changes are 10 or less, 9 or less, 8 or less, 7 or less, 6 or less, 5 or less, 4
or less, 3 or less, or 2 or less. In some embodiments, the VL acceptor human framework is identical in sequence to the VL human immunoglobulin framework sequence or human consensus framework sequence.
As an alternative to humanization, human antibodies can be generated. By “human antibody” is meant an antibody containing entirely human light and heavy chains as well as constant regions, produced by any of the known standard methods. For example, transgenic animals (e.g., mice) are available that are capable, upon immunization, of producing a full repertoire of human antibodies in the absence of endogenous immunoglobulin production. For example, it has been described that the homozygous deletion of the antibody heavy-chain joining region PH gene in chimeric and germline mutant mice results in the complete inhibition of endogenous antibody production. Transfer of the human germ-line immunoglobulin gene array in such germ line mutant mice will result in the production of human antibodies after immunization. See, e.g., Jakobovits et al., Proc. Nat. Acad. Sci. USA, 90:255 1 (1993); Jakobovits et al., Nature, 362:255-258 (1993). Alternatively, phage display technology (McCafferty et al., Nature 348:552-553 (1990)) can be used to produce human antibodies and antibody fragments in vitro, from immunoglobulin variable (V) domain gene repertoires from donors. According to this technique, antibody V domain genes are cloned in-frame into either a major or minor coat protein gene of a filamentous bacteriophage, such as M13 or fd, and displayed as functional antibody fragments on the surface of the phage particle. Because the filamentous particle contains a single-stranded DNA copy of the phage genome, selections based on the functional properties of the antibody also result in selection of the gene encoding the antibody exhibiting those properties. Thus, the phage mimics some of the properties of the B cell. Phage display can be performed in a variety of formats; for their review see, e.g., Johnson, Kevin S. and Chiswell, David J., Current Opinion in Structural Biology 3:564-57 1 (1993). Human antibodies may also be generated by in vitro activated B cells or SCID mice with its immune system reconstituted with human cells. Once a human antibody is obtained, its coding DNA sequences can be isolated, cloned and introduced into an appropriate expression system i.e. a cell line, preferably from a mammal, which subsequently express and liberate it into a culture media from which the antibody can be isolated.
Amino acid substitutions are herein indicated as AOXAS, wherein Ao indicates the original amino acid, X indicates the position of that original amino acid in the original amino acid sequence, and As indicates the substitute amino acid as present in that position in the modified amino acid sequence. For example, V153Q denotes that the original amino acid valine (V) in position 153 is changed to a glutamine (Q).
Amino acid deletions are herein indicated as A0X-, wherein Ao indicates the original amino acid, X indicates the position of that original amino acid in the original amino acid sequence and the dash indicates that the original amino acid Ao is no longer present in the modified amino acid sequence. For example N59- indicates that the asparagine (N) in position 59 is deleted in the modified amino acid sequence.
Amino acid deletions are herein indicated as A0X insAi-n, wherein Ao indicates the original amino acid, X indicates the position of that original amino acid in the original amino acid sequence
and insAi-n indicates that amino acids 1 - n replace the original amino acid Ao. For example G84 insGGGGG indicates that the original glycine in position 84 is replaced by a sequence of 5 glycines in the modified amino acid sequence.
As used herein, the phrase “NK cells” refers to a sub-population of lymphocytes that is involved in innate immunity. NK cells can be identified by virtue of certain characteristics and biological properties, such as the expression of specific surface antigens including CD56 and/or NKp46 for human NK cells, the absence of the alpha/beta or gamma/delta TCR complex on the cell surface, the ability to recognize and kill cells that fail to express “self MHC/HLA antigens by the activation of specific cytolytic machinery, the ability to kill tumor cells or other diseased cells that express a ligand for NK activating receptors, and the ability to release protein molecules called cytokines that stimulate or inhibit the immune response. Any of these characteristics and activities can be used to identify NK cells, using methods well known in the art. Any subpopulation of NK cells will also be encompassed by the term NK cells. Within the context herein “active” NK cells designate biologically active NK cells, including NK cells having the capacity of lysing target cells or enhancing the immune function of other cells. NK cells can be obtained by various techniques known in the art, such as isolation from blood samples, cytapheresis, tissue or cell collections, etc. Useful protocols for assays involving NK cells can be found in Natural Killer Cells Protocols (2000, edited by Campbell KS and Colonna M). Humana Press, pp. 219-238).
The term “tumor associated antigen” (TAA) as used herein means any antigen including but not limited to a protein, glycoprotein, ganglioside, carbohydrate, lipid that is associated with cancer. Such antigen can be expressed on malignant cells or in the tumor microenvironment such as on tumor-associated blood vessels, extracellular matrix, mesenchymal stroma, or immune infiltrates. Expressly included in the term TAA are homologues of a wild-type TAA that differs therefrom as a result of tumor-specific mutations (which can be patient-specific or shared) and that result in altered amino acid sequences, i.e. so-called neoantigens.
A “nucleic acid construct” or “nucleic acid vector” is herein understood to mean a man-made nucleic acid molecule resulting from the use of recombinant DNA technology. The term “nucleic acid construct” therefore does not include naturally occurring nucleic acid molecules although a nucleic acid construct may comprise (parts of) naturally occurring nucleic acid molecules. The terms “expression vector” or expression construct" refer to nucleic acid molecules that are capable of effecting expression of a nucleotide sequence or gene in host cells or host organisms compatible with such expression vectors or constructs. These expression vectors typically include regulatory sequence elements that are operably linked to the nucleotide sequence to be expressed to effect its expression. Such regulatory elements usually at least include suitable transcription regulatory sequences and optionally, 3’ transcription termination signals. Additional elements necessary or helpful in effecting expression may also be present, such as expression enhancer elements. The expression vector will be introduced into a suitable host cell and be able to effect expression of the coding sequence in an in vitro cell culture of the host cell. The expression vector will be suitable for replication in the host cell or organism of the invention whereas an expression construct will usually integrate in the host cell’s genome for it to be maintained. Techniques for the introduction of nucleic
acid into cells are well established in the art and any suitable technique may be employed, in accordance with the particular circumstances. For eukaryotic cells, suitable techniques may include calcium phosphate transfection, DEAE-Dextran, electroporation, liposome-mediated transfection and transduction using retrovirus or other virus, e.g. adenovirus, AAV, lentivirus or vaccinia. For microbial, e.g. bacterial, cells, suitable techniques may include calcium chloride transformation, electroporation and transfection using bacteriophage. The introduced nucleic acid may be on an extra-chromosomal vector within the cell or the nucleic acid may be integrated into the genome of the host cell. Integration may be promoted by inclusion of sequences within the nucleic acid or vector which promote recombination with the genome, in accordance with standard techniques. The introduction may be followed by expression of the nucleic acid to produce the encoded fusion protein. In some embodiments, host cells (which may include cells actually transformed although more likely the cells will be descendants of the transformed cells) may be cultured in vitro under conditions for expression of the nucleic acid, so that the encoded fusion protein polypeptide is produced, when an inducible promoter is used, expression may require the activation of the inducible promoter.
As used herein, the term “promoter” or “transcription regulatory sequence” refers to a nucleic acid fragment that functions to control the transcription of one or more coding sequences, and is located upstream with respect to the direction of transcription of the transcription initiation site of the coding sequence, and is structurally identified by the presence of a binding site for DNA- dependent RNA polymerase, transcription initiation sites and any other DNA sequences, including, but not limited to transcription factor binding sites, repressor and activator protein binding sites, and any other sequences of nucleotides known to one of skill in the art to act directly or indirectly to regulate the amount of transcription from the promoter. A “constitutive” promoter is a promoter that is active in most tissues under most physiological and developmental conditions. An “inducible” promoter is a promoter that is physiologically or developmentally regulated, e.g. by the application of a chemical inducer.
The term “selectable marker” is a term familiar to one of ordinary skill in the art and is used herein to describe any genetic entity which, when expressed, can be used to select for a cell or cells containing the selectable marker. The term “reporter” may be used interchangeably with marker, although it is mainly used to refer to visible markers, such as green fluorescent protein (GFP). Selectable markers may be dominant or recessive or bidirectional.
As used herein, the term “operably linked” refers to a linkage of polynucleotide elements in a functional relationship. A nucleic acid is “operably linked” when it is placed into a functional relationship with another nucleic acid sequence. For instance, a transcription regulatory sequence is operably linked to a coding sequence if it affects the transcription of the coding sequence. Operably linked means that the DNA sequences being linked are typically contiguous and, where necessary to join two protein encoding regions, contiguous and in reading frame.
The terms “protein” or “polypeptide” are used interchangeably and refer to molecules consisting of a chain of amino acids, without reference to a specific mode of action, size, 3- dimensional structure or origin.
The term “signal peptide” (sometimes referred to as signal sequence) is a short peptide
(usually 16-30 amino acids long) present at the N-terminus of the majority of newly synthesized proteins that are destined towards the secretory pathway. At the end of the signal peptide there is usually a stretch of amino acids that is recognized and cleaved by signal peptidase either during or after completion of translocation (from the cytosol into the secretory pathway, i.e. ER) to generate a free signal peptide and a mature protein. Signal peptides are extremely heterogeneous, and many prokaryotic and eukaryotic signal peptides are functionally interchangeable even between different species however the efficiency of protein secretion may depend on the signal peptide. Suitable signal peptides are generally known in the art e.g. from Kall et al. (2004 J. Mol. Biol. 338: 1027- 1036) and von Heijne (1985, J Mol Biol. 184 (1): 99-105).
The term “gene” means a DNA fragment comprising a region (transcribed region), which is transcribed into an RNA molecule (e.g. an mRNA) in a cell, operably linked to suitable regulatory regions (e.g. a promoter). A gene will usually comprise several operably linked fragments, such as a promoter, a 5’ leader sequence, a coding region and a 3’ non-translated sequence (3’ end) comprising a polyadenylation site. “Expression of a gene” refers to the process wherein a DNA region which is operably linked to appropriate regulatory regions, particularly a promoter, is transcribed into an RNA, which is biologically active, i.e. which is capable of being translated into a biologically active protein or peptide.
The term “homologous” when used to indicate the relation between a given (recombinant) nucleic acid or polypeptide molecule and a given host organism or host cell, is understood to mean that in nature the nucleic acid or polypeptide molecule is produced by a host cell or organisms of the same species, preferably of the same variety or strain. If homologous to a host cell, a nucleic acid sequence encoding a polypeptide will typically (but not necessarily) be operably linked to another (heterologous) promoter sequence and, if applicable, another (heterologous) secretory signal sequence and/or terminator sequence than in its natural environment. It is understood that the regulatory sequences, signal sequences, terminator sequences, etc. may also be homologous to the host cell. When used to indicate the relatedness of two nucleic acid sequences the term “homologous” means that one single-stranded nucleic acid sequence may hybridize to a complementary single-stranded nucleic acid sequence. The degree of hybridization may depend on a number of factors including the amount of identity between the sequences and the hybridization conditions such as temperature and salt concentration as discussed later.
The term "heterologous" when used with respect to a nucleic acid (DNA or RNA) or protein refers to a nucleic acid or protein that does not occur naturally as part of the organism, cell, genome or DNA or RNA sequence in which it is present, or that is found in a cell or location or locations in the genome or DNA or RNA sequence that differ from that in which it is found in nature. Heterologous nucleic acids or proteins are not endogenous to the cell into which it is introduced but has been obtained from another cell or synthetically or recombinantly produced. Generally, though not necessarily, such nucleic acids encode proteins that are not normally produced by the cell in which the DNA is transcribed or expressed. Similarly exogenous RNA encodes for proteins not normally expressed in the cell in which the exogenous RNA is present. Heterologous nucleic acids
and proteins may also be referred to as foreign nucleic acids or proteins. Any nucleic acid or protein that one of skill in the art would recognize as heterologous or foreign to the cell in which it is expressed is herein encompassed by the term heterologous nucleic acid or protein. The term heterologous also applies to non-natural combinations of nucleic acid or amino acid sequences, i.e. combinations where at least two of the combined sequences are foreign with respect to each other.
Detailed description of the invention
We have previously described multispecific antigen binding proteins, which bind to a tumor- associated antigen of interest, such as TROP2, and which comprise an NK cell-activating cytokine that triggers at least one of the NK cell’s interleukin 21 receptor and 4-1 BB, and that are capable of inducing a hyper-functional phenotype in NK cells (see WO2024/056862 and WO2024/056861). NK cells having a hyper-functional phenotype proliferate, are resistant to the tumor microenvironment, have an enhanced capability to mediate lysis of target cells, even in the absence of the original tumor associated antigen targeted, hyper-secrete cytokines (e.g. IFN-y) when in contact with target cells and have the ability to prolong these capabilities over time. Agents capable of inducing a hyper-functional phenotype in NK cells are therefore useful in the treatment of cancers and infectious diseases. However, the systemic administration of agents comprising cytokines with pleiotropic effects, such as 4-1 BB ligand (4-1 BBL) or IL-21 , remains challenging because of the risks of toxicity and other undesired side-effects. There remains therefore a need in the art for 4- 1 BBL and IL-21 treatment modalities that reduce the systemic pleiotropic effects of these cytokines, while maintaining their potential when targeted to tumors or sites infected by pathogens. The present invention therefore provides novel muteins of the extracellular domain (ECD) of 4-1 BBL having an altered affinity for 4-1 BB. For example, 4-1 BBL ECD muteins described herein and having a reduced affinity for 4-1 BB, and conjugates described herein comprising such 4-1 BBL ECD muteins, will have reduced pleiotropic- and undesired side-effects, when present in the bloodstream, while, when present at targeted sites, their avidity will ensure their local efficacy. These novel 4-1 BBL ECD muteins are combined with IL-21 muteins having a reduced affinity for IL-21 R, in conjugates with anti-TROP2 antigen-binding proteins. Without being bound by a theory, the novel conjugates described herein are designed to utilize the combined immune potentiating activity of 4-1 BBL ECD and IL-21 (which may be prerequisite to address toxicity and off-target immune suppression), to maximize efficacy at TROP2-targeted tumor loci, while at the same time improve the feasibility of dosing of the conjugates in the clinic.
4-1 BB ligand and muteins of the extracellular domain of 4-1 BB ligand
4-1 BB is a member of the tumor necrosis factor receptor family. Its alternative names are tumor necrosis factor receptor superfamily member 9 (TNFRSF9), CD137 and induced by lymphocyte activation (ILA). 4-1 BB is encoded by the TNFRSF9 gene (Entrez Gene ID: 3604). An amino acid sequence for human 4-1 BB is described in NCBI accession numbers NP_001552, which is incorporated as SEQ ID NO: 175, wherein the mature 4-1 BB corresponds to positions 24 - 255. 4-1 BB is known as a co-stimulatory immune checkpoint molecule. 4-1 BB is expressed by activated
T cells of both the CD4+ and CD8+ lineages, as well as on activated NK cells. The proliferation and activation of NK cells at least requires engagement of a costimulatory receptor such as 4-1 BB by its ligand 4-1 BBL. NK cells with increased 4-1 BB expression are known to be highly active against target cells (e.g. tumor cells) expressing 4-1 BB ligand. 4-1 BB ligand (4-1 BBL), also known as TNFSF9 or CD137L, is a protein that in humans is encoded by the TNFSF9 gene (Entrez Gene ID: 8744). An amino acid sequence for human 4-1 BBL is described in NCBI accession numbers NP_003802, the disclosure of which is incorporated herein by reference. The 4-1 BB/4-1 BBL complex consists of three monomeric 4-1 BBs bound to a trimeric 4-1 BBL. Each 4-1 BB monomer binds to two 4-1 BBLs via cysteine-rich domains (CRDs). The interaction between 4-1 BB and the second 4-1 BBL is required to stabilize their interactions.
As used herein, an “4-1 BB agonist” is an agent that has “agonist” activity at the 4-1 BB, which means that the agent that can cause or increase "4-1 BB signaling". “4-1 BB signaling” refers to an ability of 4-1 BB, e.g. when expressed on the surface of T, B and NK cells and triggered by its natural ligand 4-1 BBL, to activate or transduce an intracellular signaling pathway. The “natural 4-1 BB ligand” is herein understood as the extracellular domain (ECD) of a human wild type 4-1 BBL comprising or consisting of an amino acid sequence from position 71 to 254 of the amino acid sequence of human 4-1 BBL (i.e. SEQ ID NO: 37). A 4-1 BBL extracellular domain (ECD) is herein thus understood as a polypeptide comprising or consisting of an amino acid sequence from positions 71 to 254 of human 4-1 BBL, or a fragment thereof having 4-1 BB agonist activity.
4-1 BB agonist activity, i.e. changes in 4-1 BB signaling activity, can be measured, for example, by assays designed to measure changes in the 4-1 BB signaling pathways, e.g. by monitoring phosphorylation of signal transduction components, assays to measure the association of certain signal transduction components with other proteins or intracellular structures, or in the biochemical activity of components such as kinases, or indirectly by a downstream effect mediated by 4-1 BB (e.g. production of specific cytokines). A suitable cell-based assay for in vitro biological activity of a 4-1 BB agonist, is e.g. described in Zhang et al. (Clin Cancer Res ,2007;13(9): 2758- 2767), using measurement of IL-2 production from splenocytes aseptically removed from BALB/c mice in microtiter plates precoated with an anti-CD3 monoclonal antibody (145-11 C clone). Other suitable cell-based assays for in vitro biological activity of a 4-1 BB agonist, are described in WO2016/075278, Example 6 (see e.g. Example 6.1). The natural 4-1 BB ligand, a 4-1 BBL ECD trimer as described by Fellermeier et al. (Oncoimmunol. 2016, 5(11): e1238540), e.g. a 4-1 BBL ECD trimer comprising the amino acid sequence of SEQ ID NO: 36, or an anti-CD137 agonist antibody (such the antibody 2A, Epstein et al., Tumor necrosis imaging and treatment of solid tumors. In: V. P. Torchilin, editor. Handbook of targeted delivery of imaging agents, Vol. 16. Boca Raton: CRCPress; 1995. p. 259.) can serve as a positive control in an assay for 4-1 BB agonist activity and can also be used as a reference for the amount of 4-1 BB agonist activity of a given nonnatural 4-1 BB agonist, such as a multispecific antigen binding protein as described herein comprising a 4-1 BB agonist. The data presented herein supports the use of carefully designed 4- 1 BBL ECD muteins to achieve 4-1 BB signalling at the appropriate time and place and to improve pharmacokinetics of therapeutics comprising such 4-1 BBL ECD muteins. In addition, the 4-1 BBL
ECD muteins provided herein are designed to reduce potential unwanted effects in the absence of the target cells, e.g. hepatotoxicity and cytokine release.
In a first aspect, the present disclosure provides muteins of the 4-1 BBL ECD comprising at least one substitution, deletion and/or insertion. Amino acid substitutions, deletions and insertions in a 4-1 BBL ECD mutein provided herein are indicated relative to the wild-type human 4-1 BBL ECD amino acid sequence, which is provided herein as SEQ ID NO: 37. Hence, to allow for allelic variation, a wild-type human 4-1 BBL ECD preferably comprises an amino acid sequence having, with increasing preference, at least 85%, at least 90%, at least 95%, at least 96%, at least 97%, at least 98%, at least 99% or 100% sequence identity with SEQ ID NO: 37.
In one embodiment, a 4-1 BBL ECD mutein provided herein comprises the amino acid sequence of SEQ ID NO: 49, wherein SEQ ID NO: 49 is
REGPELSPDD PAGLLDLRQG MFAQLVAQNX XLIDGPLSWX SDPXXXGVSL TGGLSYKEDT KELWAKAGV YYVFFQLELR RVXXGEGSGS VSLALHLQPL XSAAGAAALA LTVDLPPASS EARNSAFGFQ GRLLHLSAGQ RLGVHLHTEA RARHAWXLTX GATVLGLFRV TPEI PAGLPS
PRSE (SEQ ID NO: 49), wherein X represents any amino acid, and wherein the 4-1 BBL ECD mutein amino acid sequence differs from the amino acid sequence of the wild type human 4-1 BBL ECD (SEQ ID NO: 37) by at least one amino acid. The amino acid positions in the amino acid sequence of the 4-1 BBL ECD muteins of SEQ ID NO: 49, as referred to herein correspond to the amino acid positions of the full- length 4-1 BBL amino acid sequence. Hence, the first amino acid position in SEQ ID NO: 49 is referred to as position 71 , from which the subsequent amino acid positions are counted, up to the last amino acid in position 254.
In one embodiment, there is provided a 4-1 BBL ECD mutein comprising at least one amino acid substitution, deletion or insertion at a position in SEQ ID NO: 37 selected from the group consisting of the positions: 154, 153, 110, 227, 101 , 230, 100, 114, 115, 116, and 171 , in decreasing preference. In one embodiment, the 4-1 BBL ECD mutein comprises no other amino acid sequence modification than the at least one amino acid substitution, deletion or insertion at a position in SEQ ID NO: 37 selected from the group consisting of the positions: 154, 153, 110, 227, 101 , 110, 230, 100, 114, 115, 116, and 171.
In one embodiment, a 4-1 BBL ECD mutein provided herein comprises the amino acid sequence of SEQ ID NO: 49, wherein SEQ ID NO: 49 differs from SEQ ID NO: 37 by at least one amino acid at a position designated by X in SEQ ID NO: 49. In one embodiment, the 4-1 BBL ECD mutein comprising SEQ ID NO: 49 has, with increasing preference, at least 80%, at least 81 %, at least 82%, at least 83%, at least 84%, at least 85%, at least 86%, at least 87%, at least 88%, at least 89%, at least 90%, at least 91 %, at least 92%, at least 93%, at least 94%, at least 95%, at least 96%, at least 97%, at least 98%, at least 99%, or at least 99.4% sequence identity to SEQ ID NO: 37.
In one embodiment, there is provided a 4-1 BBL ECD mutein comprises an amino acid sequence having, with increasing preference, at least 85%, at least 90%, at least 95%, at least 96%, at least 97%, at least 98%, at least 99% or 100% sequence identity with SEQ ID NO: 37, and
wherein the amino acid sequence comprises at least one amino acid substitution selected from the group consisting of: A154D; A154E; V153Q; Q227E; L101N; Y110Q; Q230K; V100Q; V100T; V100S; V100A; V100G; V100N; V100D; V100E; V100K; V100R; L101E; L101Q; L101D; L101R; L101K; Y110E; Y110N; Y110D; Y110R; Y110K; Y110S; Y110A; Y110G; Y110T; G114K; G114R; G114Q; G114D; G114E; G114N; G114S; G114A; G114G; G114T; L115R; L115K; L115Q; L115N; L115D; L115E; L115S; L115A; L115G; L115T; A116D; A116E; A116R; A116K; A116Q; A116N;
A116Y; A116H; V153N; V153R; V153K; V153D; V153E; V153S; V153G; A154R; A154K; A154Q;
A154N; A154Y; A154H; G155Q; R171D; R171E; R171Q; R171N; R171S; R171T; R171G; R171A;
R171Y; Q227R; Q227K; Q227D; Q227Y; Q227H; Q227G; Q227S; Q227T; Q230S; Q230R; Q230N;
Q230D; Q230E; Q230G; Q230S; Q230T and Q230A. In one embodiment, there is provided a 4- 1BBL ECD mutein comprising at least one amino acid substitution selected from the group consisting of: A154D; A154E; V153Q; Q227E; L101N; Y110Q; Q230K; V100Q; V100T; V100S; V100A; V100G; V100N; V100D; V100E; V100K; V100R; L101E; L101Q; L101D; L101R; L101K; Y110E; Y110N; Y110D; Y110R; Y110K; Y110S; Y110A; Y110G; Y110T; G114K; G114R; G114Q; G114D; G114E; G114N; G114S; G114A; G114G; G114T; L115R; L115K; L115Q; L115N; L115D; L115E; L115S; L115A; L115G; L115T; A116D; A116E; A116R; A116K; A116Q; A116N; A116Y; A116H; V153N; V153R; V153K; V153D; V153E; V153S; V153G; A154R; A154K; A154Q; A154N; A154Y; A154H; R171D; R171E; R171Q; R171N; R171S; R171T; R171G; R171A; R171Y; Q227R; Q227K; Q227D; Q227Y; Q227H; Q227G; Q227S; Q227T; Q230S; Q230R; Q230N; Q230D; Q230E; Q230G; Q230S; Q230T and Q230A. In one embodiment, the 4-1 BBL ECD mutein comprises no other amino acid sequence modification than the at least one amino acid substitution selected from the group consisting of: A154D; A154E; V153Q; Q227E; L101N; Y110Q; Q230K; V100Q; V100T; V100S; V100A; V100G; V100N; V100D; V100E; V100K; V100R; L101E; L101Q; L101D; L101R;
L101K; Y110E; Y110N; Y110D; Y110R; Y110K; Y110S; Y110A; Y110G; Y110T; G114K; G114R; G114Q; G114D; G114E; G114N; G114S; G114A; G114G; G114T; L115R; L115K; L115Q; L115N; L115D; L115E; L115S; L115A; L115G; L115T; A116D; A116E; A116R; A116K; A116Q; A116N; A116Y; A116H; V153N; V153R; V153K; V153D; V153E; V153S; V153G; A154R; A154K; A154Q; A154N; A154Y; A154H; R171D; R171E; R171Q; R171N; R171S; R171T; R171G; R171A; R171Y; Q227R; Q227K; Q227D; Q227Y; Q227H; Q227G; Q227S; Q227T; Q230S; Q230R; Q230N; Q230D; Q230E; Q230G; Q230S; Q230T; and Q230A.
In one embodiment, there is provided a 4-1 BBL ECD mutein comprising at least two, three, four or five amino acid substitutions selected from the group consisting of: A154D; A154E; V153Q; Q227E; L101N; Y110Q; Q230K; V100Q; V100T; V100S; V100A; V100G; V100N; V100D; V100E; V100K; V100R; L101E; L101Q; L101D; L101R; L101K; Y110E; Y110N; Y110D; Y110R; Y110K; Y110S; Y110A; Y110G; Y110T; G114K; G114R; G114Q; G114D; G114E; G114N; G114S; G114A; G114G; G114T; L115R; L115K; L115Q; L115N; L115D; L115E; L115S; L115A; L115G; L115T; A116D; A116E; A116R; A116K; A116Q; A116N; A116Y; A116H; V153N; V153R; V153K; V153D; V153E; V153S; V153G; A154R; A154K; A154Q; A154N; A154Y; A154H; R171D; R171E; R171Q; R171N; R171S; R171T; R171G; R171A; R171Y; Q227R; Q227K; Q227D; Q227Y; Q227H; Q227G; Q227S; Q227T; Q230S; Q230R; Q230N; Q230D; Q230E; Q230G; Q230S; Q230T; and Q230A. In
one embodiment, the 4-1 BBL ECD mutein comprises no other amino acid sequence modification than theat least two, three, four or five amino acid substitutions selected from the group consisting of: A154D; A154E; V153Q; Q227E; L101 N; Y110Q; Q230K; V100Q; V100T; V100S; V100A;
V100G; V100N; V100D; V100E; V100K; V100R; L101 E; L101Q; L101 D; L101 R; L101 K; Y110E;
Y110N; Y110D; Y110R; Y110K; Y110S; Y110A; Y110G; Y110T; G1 14K; G1 14R; G1 14Q; G1 14D;
G1 14E; G1 14N; G1 14S; G1 14A; G1 14G; G114T; L115R; L115K; L115Q; L115N; L115D; L115E; L115S; L115A; L115G; L115T; A116D; A116E; A116R; A116K; A116Q; A116N; A116Y; A116H; V153N; V153R; V153K; V153D; V153E; V153S; V153G; A154R; A154K; A154Q; A154N; A154Y;
A154H; R171 D; R171 E; R171 Q; R171 N; R171 S; R171T; R171 G; R171A; R171Y; Q227R; Q227K; Q227D; Q227Y; Q227H; Q227G; Q227S; Q227T; Q230S; Q230R; Q230N; Q230D; Q230E; Q230G; Q230S; Q230T; and Q230A.
In one embodiment, there is provided a 4-1 BBL ECD mutein comprising at least one amino acid substitution at a position in SEQ ID NO: 37 selected from the substitutions listed in Table B.
Table B. Additional substitutions, deletions and insertions for 4-1 BBL ECD muteins
In one embodiment, there is provided a 4-1 BBL ECD mutein comprising at least one amino acid substitution at a position in SEQ ID NO: 37 selected from the group consisting of: A154D, A154E, V153Q, Q227E, L101 N, Y110Q, Q230K, and V100Q. In one embodiment, there is provided a 4-1 BBL ECD mutein comprising at least one amino acid substitution at a position in SEQ ID NO: 37 selected from the group consisting of: A154D; A154E; V153Q; Q227E; L101 N; Y110Q and Q230K. In one embodiment, there is provided a 4-1 BBL ECD mutein comprising at least one amino acid substitution at a position in SEQ ID NO: 37 selected from the group consisting of: A154D; A154E; V153Q; and Q227E. In one embodiment, there is provided a 4-1 BBL ECD mutein comprising at least one amino acid substitution at a position in SEQ ID NO: 37 selected from the group consisting of: A154D and A154E.
In one embodiment, there is provided a 4-1 BBL ECD mutein, wherein the 4-1 BBL ECD mutein amino acid sequence differs from the amino acid sequence of the wild type human 4-1 BBL ECD (SEQ ID NO: 37) at least at a position corresponding to position 154 of the full-length 4-1 BBL amino acid sequence. In one embodiment, the 4-1 BBL ECD mutein comprises no other differences from the wild type amino acid sequence than the difference at position 154. In one embodiment, the different amino acid at position 154 is aspartate (D) or glutamate (E), of which aspartate (D) is preferred.
In one embodiment, a 4-1 BBL ECD mutein provided herein comprises the amino acid sequence of SEQ ID NO: 49, wherein the 4-1 BBL ECD mutein amino acid sequence differs from the amino acid sequence of the wild type human 4-1 BBL ECD (SEQ ID NO: 37) at least at position 154, and wherein preferably the 4-1 BBL ECD mutein comprises a A154D or A154E substitution. In one embodiment, there is provided a 4-1 BBL ECD mutein comprising a A154D or A154E substitution in combination with at least one, two, three, four or five amino acid substitutions selected from the group consisting of: V100T; V100Q; V100S; V100A; V100G; V100N; V100D; V100E; V100K; V100R; L101 N; L101 E; L101Q; L101 D; L101 R; L101 K; Y110Q; Y110E; Y110N; Y110D; Y110R; Y110K; Y110S; Y110A; Y110G; Y110T; G1 14K; G1 14R; G1 14Q; G1 14D; G1 14E; G1 14N; G1 14S; G1 14A; G1 14G; G114T; L115R; L115K; L115Q; L115N; L115D; L115E; L115S; L115A; L115G; L115T; A116D; A116E; A116R; A116K; A116Q; A116N; A116Y; A116H; V153Q; V153N; V153R; V153K; V153D; V153E; V153S; V153G; G155Q; R171 D; R171 E; R171 Q; R171 N; R171 S; R171T; R171 G; R171A; R171Y; Q227E; Q227R; Q227K; Q227D; Q227Y; Q227H; Q227G; Q227S; Q227T; Q230S; Q230K; Q230R; Q230N; Q230D; Q230E; Q230G; Q230S; Q230T; and Q230A, of which V153Q; Q227E; L101 N; Y110Q; Q230K; and V100Q, are preferred.
In one embodiment, there is provided a 4-1 BBL ECD mutein comprising a combination of substitutions selected from the group consisting of: A154D and V153Q; A154D and G155Q; A154D and Q227E; A154D and L101 N; A154D and Y110Q; A154D and Q230K; A154D and V100Q; A154D and V100T; A154D and V100S; A154D and V100A; A154D and V100G; A154D and V100N; A154D and V100D; A154D and V100E; A154D and V100K; A154D and V100R; A154D and L101 E; A154D and L101 Q; A154D and L101 D L101 R; A154D and L101 K; A154D and Y110E; A154D and Y1 10N; A154D and Y110D; A154D and Y110R; A154D and Y110K; A154D and Y110S; A154D and Y110A; A154D and Y110G; A154D and Y110T; A154D and G1 14K; A154D and G114R; A154D and G114Q; A154D and G114D; A154D and G1 14E; A154D and G114N; A154D and G1 14S; A154D and G114A; A154D and G114G; A154D and G114T; A154D and L115R; A154D and L115K; A154D and L115Q; A154D and L115N; A154D and L115D; A154D and L115E; A154D and L115S; A154D and L115A; A154D and L115G; A154D and L115T; A154D and A116D; A154D and A116E; A154D and A116R; A154D and A116K; A154D and A116Q; A154D and A116N; A154D and A116Y; A154D and A116H; A154D and V153N; A154D and V153R; A154D and V153K; A154D and V153D; A154D and V153E; A154D and V153S; A154D and V153G; A154D and R171 D; A154D and R171 E; A154D and R171 Q; A154D and R171 N; A154D and R171 S; A154D and R171T; A154D and R171 G; A154D and R171A; A154D and R171Y; A154D and Q227R; A154D and Q227K; A154D and Q227D; A154D and Q227Y; A154D and Q227H; A154D and Q227G; A154D and Q227S; A154D
and Q227T; A154D and Q230S; A154D and Q230R; A154D and Q230N; A154D and Q230D; A154D and Q230E; A154D and Q230G; A154D and Q230S; A154D and Q230T; A154D and Q230A; A154E and V153Q; A154E and Q227E; A154E and L101 N; A154E and Y110Q; A154E and Q230K; A154E and V100Q; A154E and V100T; A154E and V100S; A154E and V100A; A154E and V100G; A154E and V100N; A154E and V100D; A154E and V100E; A154E and V100K; A154E and V100R; A154E and L101 E; A154E and L101 Q; A154E and L101 D L101 R; A154E and L101 K; A154E and Y110E; A154E and Y110N; A154E and Y110D; A154E and Y110R; A154E and Y110K; A154E and Y110S; A154E and Y110A; A154E and Y110G; A154E and Y110T; A154E and G114K; A154E and G114R; A154E and G114Q; A154E and G114D; A154E and G114E; A154E and G114N; A154E and G114S; A154E and G114A; A154E and G114G; A154E and G114T; A154E and L115R; A154E and L115K; A154E and L1 15Q; A154E and L1 15N; A154E and L115D; A154E and L115E; A154E and L115S; A154E and L1 15A; A154E and L115G; A154E and L115T; A154E and A116D; A154E and A116E; A154E and A116R; A154E and A116K; A154E and A116Q; A154E and A116N; A154E and A116Y; A154E and A116H; A154E and V153N; A154E and V153R; A154E and V153K; A154E and V153D; A154E and V153E; A154E and V153S; A154E and V153G; A154E and R171 D; A154E and R171 E; A154E and R171 Q; A154E and R171 N; A154E and R171 S; A154E and R171T; A154E and R171 G; A154E and R171A; A154E and R171Y; A154E and Q227R; A154E and Q227K; A154E and Q227D; A154E and Q227Y; A154E and Q227H; A154E and Q227G; A154E and Q227S; A154E and Q227T; A154E and Q230S; A154E and Q230R; A154E and Q230N; A154E and Q230D; A154E and Q230E; A154E and Q230G; A154E and Q230S; A154E and Q230T; and A154E and Q230A.
In one embodiment, a 4-1 BBL ECD mutein provided herein comprises the amino acid sequence of SEQ ID NO: 49, wherein the 4-1 BBL ECD mutein amino acid sequence differs from the amino acid sequence of the wild type human 4-1 BBL ECD (SEQ ID NO: 37) at least at position 100, and wherein preferably the 4-1 BBL ECD mutein comprises a V100T or a V100Q substitution. In one embodiment, there is provided a 4-1 BBL ECD mutein comprising a V153Q substitution in combination with at least one, two, three, four or five amino acid substitutions selected from the group consisting of: V100T; L101 N; Y110Q; G1 14K; L115R; A116D; R171 D; Q227E; Q227R; Q230S; and Q230K. In one embodiment, there is provided a 4-1 BBL ECD mutein comprising a combination of substitutions selected from the group consisting of: V153Q and V100T; V153Q and L101 N; V153Q and Y110Q; V153Q and G114K; V153Q and L115R; V153Q and A116D; V153QV153Q and R171 D; V153Q and Q227E; V153Q and Q227R; V153Q and Q230S; and, V153Q and Q230K.
In one embodiment, a 4-1 BBL ECD mutein provided herein comprises the amino acid sequence of SEQ ID NO: 49, wherein the 4-1 BBL ECD mutein amino acid sequence differs from the amino acid sequence of the wild type human 4-1 BBL ECD (SEQ ID NO: 37) at least at position 100, and wherein preferably the 4-1 BBL ECD mutein comprises an L101 N substitution. In one embodiment, there is provided a 4-1 BBL ECD mutein comprising an L101 N substitution in combination with at least one, two, three, four or five amino acid substitutions selected from the group consisting of: Y110Q; G1 14K; L115R; A116D; R171 D; Q227E; Q227R; Q230S; and Q230K.
In one embodiment, there is provided a 4-1 BBL ECD mutein comprising a combination of substitutions selected from the group consisting of L101 N and Y110Q; L101 N and G114K; L101 N and L115R; L101 N and A116D; L101 N and R171 D; L101 N and Q227E; L101 N and Q227R; L101 N and Q230S; and, L101 N and Q230K.
In one embodiment, a 4-1 BBL ECD mutein provided herein comprises the amino acid sequence of SEQ ID NO: 49, wherein the 4-1 BBL ECD mutein amino acid sequence differs from the amino acid sequence of the wild type human 4-1 BBL ECD (SEQ ID NO: 37) at least at position 100, and wherein preferably the 4-1 BBL ECD mutein comprises a Y110Q substitution. In one embodiment, there is provided a 4-1 BBL ECD mutein comprising a Y110Q substitution in combination with at least one, two, three, four or five amino acid substitutions selected from the group consisting of: G114K; L115R; A116D; R171 D; Q227E; Q227R; Q230S; and Q230K. In one embodiment, there is provided a 4-1 BBL ECD mutein comprising a combination of substitutions selected from the group consisting of Y110Q and G1 14K; Y1 10Q and L1 15R; Y110Q and A1 16D; Y110Q and R171 D; Y110Q and Q227E; Y110Q and Q227R; Y110Q and Q230S; and, Y110Q and Q230K. In one embodiment, there is provided a 4-1 BBL ECD mutein comprising the combination of substitutions Y110Q, A154D and Q227E.
In one embodiment, a 4-1 BBL ECD mutein provided herein comprises the amino acid sequence of SEQ ID NO: 49, wherein the 4-1 BBL ECD mutein amino acid sequence differs from the amino acid sequence of the wild type human 4-1 BBL ECD (SEQ ID NO: 37) at least at position 100, and wherein preferably the 4-1 BBL ECD mutein comprises a G114K substitution. In one embodiment, there is provided a 4-1 BBL ECD mutein comprising a G114K substitution in combination with at least one, two, three, four or five amino acid substitutions selected from the group consisting of: L115R; A116D; R171 D; Q227E; Q227R; Q230S; and Q230K. In one embodiment, there is provided a 4-1 BBL ECD mutein comprising a combination of substitutions selected from the group consisting of G114K and G1 14K; G114K and L1 15R; G1 14K and A1 16D; G114K and R171 D; G114K and Q227E; G114K and Q227R; G114K and Q230S; and, G114K and Q230K.
In one embodiment, a 4-1 BBL ECD mutein provided herein comprises the amino acid sequence of SEQ ID NO: 49, wherein the 4-1 BBL ECD mutein amino acid sequence differs from the amino acid sequence of the wild type human 4-1 BBL ECD (SEQ ID NO: 37) at least at position 100, and wherein preferably the 4-1 BBL ECD mutein comprises an L115R substitution. In one embodiment, there is provided a 4-1 BBL ECD mutein comprising an L115R substitution in combination with at least one, two, three, four or five amino acid substitutions selected from the group consisting of: A116D; R171 D; Q227E; Q227R; Q230S; and Q230K. In one embodiment, there is provided a 4-1 BBL ECD mutein comprising a combination of substitutions selected from the group consisting of L115R and A116D; L115R and R171 D; L115R and Q227E; L115R and Q227R; L115R and Q230S; and, L115R and Q230K.
In one embodiment, a 4-1 BBL ECD mutein provided herein comprises the amino acid sequence of SEQ ID NO: 49, wherein the 4-1 BBL ECD mutein amino acid sequence differs from the amino acid sequence of the wild type human 4-1 BBL ECD (SEQ ID NO: 37) at least at position
100, and wherein preferably the 4-1 BBL ECD mutein comprises an A116D substitution. In one embodiment, there is provided a 4-1 BBL ECD mutein comprising an A116D substitution in combination with at least one, two, three or four amino acid substitutions selected from the group consisting of: R171 D; Q227E; Q227R; Q230S; and Q230K. In one embodiment, there is provided a 4-1 BBL ECD mutein comprising a combination of substitutions selected from the group consisting of: A116D and R171 D; A116D and Q227E; A116D and Q227R; A116D and Q230S; and, A116D and Q230K.
In one embodiment, a 4-1 BBL ECD mutein provided herein comprises the amino acid sequence of SEQ ID NO: 49, wherein the 4-1 BBL ECD mutein amino acid sequence differs from the amino acid sequence of the wild type human 4-1 BBL ECD (SEQ ID NO: 37) at least at position 100, and wherein preferably the 4-1 BBL ECD mutein comprises an R171 D substitution. In one embodiment, there is provided a 4-1 BBL ECD mutein comprising an R171 D substitution in combination with at least one or two amino acid substitutions selected from the group consisting of: Q227E; Q227R; Q230S; and Q230K. In one embodiment, there is provided a 4-1 BBL ECD mutein comprising a combination of substitutions selected from the group consisting of: R171 D and Q227E; R171 D and Q227R; R171 D and Q230S; and, R171 D and Q230K.
In one embodiment, a 4-1 BBL ECD mutein provided herein comprises the amino acid sequence of SEQ ID NO: 49, wherein the 4-1 BBL ECD mutein amino acid sequence differs from the amino acid sequence of the wild type human 4-1 BBL ECD (SEQ ID NO: 37) at least at position 100, and wherein preferably the 4-1 BBL ECD mutein comprises a Q227E or Q227R substitution. In one embodiment, there is provided a 4-1 BBL ECD mutein comprising a Q227E substitution in combination with at least one amino acid substitution selected from Q230S and Q230K. In one embodiment, there is provided a 4-1 BBL ECD mutein comprising a combination of substitutions selected from the group consisting of: Q227E and Q230S; and, Q227E and Q230K. In one embodiment, there is provided a 4-1 BBL ECD mutein comprising a Q227R substitution in combination with at least one amino acid substitution selected from Q230S and Q230K. In one embodiment, there is provided a 4-1 BBL ECD mutein comprising a combination of substitutions selected from the group consisting of: Q227R and Q230S; and, Q227R and Q230K.
In one embodiment, there is provided a 4-1 BBL ECD mutein comprising a combination of substitutions at positions in SEQ ID NO: 37, selected from the group consisting of: Y110Q, V153Q and Q227E; L101 N, Y110Q and V153Q; V100Q, Y110Q and V153Q; L101 N, V153Q and Q227E; Y110Q, A154D and Q227E; Y110Q and V153Q; V153Q and Q227E; Y110Q and Q227E; and, L101 N and Q227E.
Substitutions to aspartate, such A154D, when followed (in an N- to C-terminal direction) by a G-, A- or S-residue, such as G155, can potentially introduce an aspartate isomerization site, which can lead to the instability and/or increased degradation rate of a mutein comprising such isomerization site. In one embodiment therefore, a substitution to aspartate, when followed by a G- , A- or S-residue, the substitution to aspartate is combined with a substitution of the subsequent G- , A- or S-residue to any amino acid residue other than G, A, S or T. Preferably the subsequent G-, A- or S-residue substituted to Q, N, Y, L, V, or F. Hence, in one embodiment, there is provided a 4-
1 BBL ECD mutein comprising a combination of substitutions at positions in SEQ ID NO: 37, selected from the group consisting of: Y110D and S111X; L115D and A116X; A116D and G1 17X; V153D and A154X; A154 D and G155X; R171 D and S172X; and, Q230D andG231X, wherein X is any to any amino acid residue other than G, A, S or T, whereby preferably X is Q, E, N, D, H, K, R or Y. In a preferred embodiment, any 4-1 BBL ECD mutein comprising the A154D substitution is combined with a G155X substitution, wherein X is any to any amino acid residue other than G, A, S or T, whereby preferably X is Q, E, N, D, H, K, R or Y, of which Q is most preferred.
In one embodiment, there is provided a 4-1 BBL ECD mutein as structurally defined above, which 4-1 BBL ECD mutein binds to its cognate receptor 4-1 BB with a reduced affinity, relative to the affinity of wild-type 4-1 BBL ECD for the 4-1 BB. In one embodiment, there is provided a 4-1 BBL ECD mutein as structurally defined above, which 4-1 BBL ECD mutein binds to its cognate receptor human 4-1 BB with a reduced affinity, relative to the affinity of wild-type 4-1 BBL ECD for the human 4-1 BB, e.g. a human 4-1 BB having an amino acid sequence comprised in SEQ ID NO: 175.
It is understood herein that a 4-1 BBL ECD mutein with reduced affinity for its cognate receptor 4-1 BB, as compared to a wild type 4-1 BBL ECD mutein, will also have a reduced affinity for 4-1 BB when present in a homotrimeric fusion protein comprising three 4-1 BBL ECD mutein monomers connected through polypeptide linkers, e.g. (GGGGS)4. Generally, the affinity of a 4- 1 BBL ECD mutein for its cognate receptor 4-1 BB is herein defined as the affinity for 4-1 BB as determined when the 4-1 BBL ECD mutein is present in a homotrimeric fusion protein comprising three identical 4-1 BBL ECD mutein monomers connected through (GGGGS)4 polypeptide linkers, whereby the homotrimer can be present in a conjugate with an antibody (e.g. trastuzumab), which conjugate can further comprise IL-21 .
In one embodiment, there is provided a 4-1 BBL ECD mutein having a with a reduced affinity for 4-1 BB, relative to the affinity of wild-type 4-1 BBL ECD, wherein the 4-1 BBL ECD mutein comprises at least one substitution selected from the group consisting of: V100T; V100Q; L101 N; Y110Q; G1 14K; V153Q; R171 D; Q227E; Q227R; Q230S; Q230K; A116D; A154D; and A154E; or wherein the 4-1 BBL ECD mutein comprises a combination of substitutions selected from the group consisting of: Y110Q, V153Q and Q227E; L101 N, Y110Q and V153Q; V100Q, Y110Q and V153Q; L101 N, V153Q and Q227E; Y1 10Q, A154D and Q227E; A154D and G155Q; Y110Q and V153Q; V153Q and Q227E; Y1 10Q and Q227E; and, L101 N and Q227E.
The 4-1 BBL ECD muteins provided herein bind to 4-1 BB in a non-covalent and reversible manner. In one embodiment, the binding strength of a 4-1 BBL ECD mutein to 4-1 BB may be described in terms of its affinity, a measure of the strength of interaction between the binding site of the mutein and 4-1 BB. In one embodiment, a 4-1 BBL ECD mutein provided herein has a low- affinity for 4-1 BB and thus will bind a lesser amount of 4-1 BB than a wild type 4-1 BBL. In one embodiment, a 4-1 BBL ECD mutein provided herein has an equilibrium association constant, KA, which is, with decreasing preference, at least 103 M-1, at least 104 M-1, at least 105 M-1, at least 106 M’1, at least 107 M-1, at least 108 M-1, at least 109 M-1, or at least 101° M-1. As understood by the artisan of ordinary skill, KA can be influenced by factors including pH, temperature and buffer composition.
In one embodiment, the binding strength of a 4-1 BBL ECD mutein provided herein to 4-1 BB may be described in terms of its affinity, i.e. KD. KD is the equilibrium dissociation constant, a ratio of koff/kon, between the 4-1 BBL ECD mutein and 4-1 BB. KD and KA are inversely related. The KD value relates to the concentration of the mutein (the amount of mutein needed for a particular experiment or application) and so the lower the KD value (lower concentration needed) the higher the affinity of the mutein. In one embodiment, the binding strength of a 4-1 BBL ECD mutein provided herein to 4-1 BB may be described in terms of KD. In one embodiment, the KD of a 4-1 BBL ECD mutein provided herein is about 10-3 M, about 10-4 M, about 10-5 M, about 10-6 M, or less. In one embodiment, the KD of a 4-1 BBL ECD mutein provided herein is micromolar, nanomolar, or picomolar. In one embodiment, the KD of a 4-1 BBL ECD mutein provided herein is within a range of about 103 to 10-4 M, or about 104 to 10-5 M, or 105 to 10-6 M, or 107 to 10-8 M, 108 to 10-9 M. In one embodiment, a 4-1 BBL ECD mutein provided herein binds to the human 4-1 BB with a Ko that is greater than or is about 140 nM. In one embodiment, a 4-1 BBL ECD mutein provided herein binds to the human 4-1 BB with a KD of about 100 nM to about 4,000 nM, 200 nM to 4,000 nM, 500 nM to 4,000 nM, 1 ,000 nM to 4,000 nM, 120 nM to 3,000 nM, 200 nM to 2,000 nM, 500 nM to 2,000 nM, or 1 ,000 nM to 2,000 nM.
In one embodiment, a 4-1 BBL ECD mutein provided herein exhibits a reduction in binding affinity for human 4-1 BB. In one embodiment, the 4-1 BBL ECD mutein provided herein is a mutein that exhibits at least about a 2-fold, 5-fold, 10-fold, 20-fold, 50-fold, 100-fold, 200-fold, 500-fold, 1000-fold, 2000-fold, 5000-fold or 10.000-fold reduction in binding affinity for 4-1 BB, relative to, relative to the affinity of wild-type 4-1 BBL ECD for 4-1 BB.
In one embodiment, the binding affinity of a 4-1 BBL ECD mutein provided herein for 4-1 BB is determined by SPR, e.g. as described in the Examples herein. In one embodiment, the binding affinity of a 4-1 BBL ECD mutein provided herein for 4-1 BB, is thus determined when the 4-1 BBL ECD mutein is present in a homotrimeric fusion protein comprising three identical 4-1 BBL ECD mutein monomers connected through (GGGGS)4 polypeptide linkers, which homotrimer is present in a conjugate with a monoclonal antibody (e.g. trastuzumab), which conjugate further comprises IL-21 .
In one embodiment, a 4-1 BBL ECD mutein provided herein exhibits a binding affinity for human 4-1 BB, expressed as pKo, that is at least 0.4 lower than the pKo of a wild-type 4-1 BBL ECD for human 4-1 BB. pKo is understood herein to be -logio(Ko). In one embodiment, the 4-1 BBL ECD mutein having at least a 0.4 lower pKo for human 4-1 BB, relative to the pKo of a wild-type 4-1 BBL ECD for human 4-1 BB, is a 4-1 BBL ECD mutein comprising at least one substitution selected from the group consisting of: A154D; A154E; a combination of A154D and G155Q; V153Q; Q227E; L101 N; Y110Q; Q230K; V100Q; V100T; and A116D; or the 4-1 BBL ECD mutein comprises no other amino acid sequence modification than the at least one amino acid substitution selected from the group consisting of: A154D; A154E; a combination of A154D and G155Q; V153Q; Q227E; L101 N; Y110Q; Q230K; V100Q; V100T; and A1 16D.
In one embodiment, a 4-1 BBL ECD mutein provided herein exhibits a binding affinity for human 4-1 BB, expressed as pKo, that is at least 0.5 lower than the pKo of a wild-type 4-1 BBL ECD
for human 4-1 BB. In one embodiment, the 4-1 BBL ECD mutein having at least a 0.5 lower pKo for human 4-1 BB, relative to the pKo of a wild-type 4-1 BBL ECD for human 4-1 BB, is a 4-1 BBL ECD mutein comprising at least one substitution selected from the group consisting of: A154D; A154E; a combination of A154D and G155Q; V153Q; Q227E; L101 N; Y110Q; Q230K; V100Q; and V100T; or the 4-1 BBL ECD mutein comprises no other amino acid sequence modification than the at least one amino acid substitution selected from the group consisting of: A154D; A154E; a combination of A154D and G155Q; V153Q; Q227E; L101 N; Y1 10Q; Q230K; V100Q; and V100T.
In one embodiment, a 4-1 BBL ECD mutein provided herein exhibits a binding affinity for human 4-1 BB, expressed as pKo, that is at least 1 .0 lower than the pKo of a wild-type 4-1 BBL ECD for human 4-1 BB. In one embodiment, the 4-1 BBL ECD mutein having at least a 1 .0 lower pKo for human 4-1 BB, relative to the pKo of a wild-type 4-1 BBL ECD for human 4-1 BB, is a 4-1 BBL ECD mutein comprising at least one substitution selected from the group consisting of: A154D; A154E; a combination of A154D and G155Q; V153Q; Q227E; L101 N; Y110Q; Q230K; and V100Q; or the
4-1 BBL ECD mutein comprises no other amino acid sequence modification than the at least one amino acid substitution selected from the group consisting of: A154D; A154E; a combination of A154D and G155Q; V153Q; Q227E; L101 N; Y110Q; Q230K; and V100Q.
In one embodiment, a 4-1 BBL ECD mutein provided herein exhibits a reduction in activity as measured by a suitable assay for measuring changes in a 4-1 BB signaling pathway as described above, relative to the activity of wild-type 4-1 BBL ECD under corresponding conditions. In one embodiment, a 4-1 BBL ECD mutein provided herein exhibits at least about a 2-fold, 5-fold, 10-fold, 20-fold, 50-fold, 100-fold, 200-fold, 500-fold, 1000-fold, 2000-fold, 5000-fold or 10.000-fold reduction in activity as measured by a 4-1 BB signaling assay, relative to the activity of wild-type 4- 1 BBL ECD under corresponding conditions.
In one embodiment, a 4-1 BBL ECD mutein provided herein exhibits at least about a 2-fold,
5-fold, 10-fold, 20-fold, 50-fold, 100-fold, 200-fold, 500-fold, 1 ,000-fold, 2,000-fold, 5,000-fold, 10,000-fold reduction in activity as measured by a NK cell proliferation assay, relative to the activity of wild-type 4-1 BBL ECD under corresponding conditions. In one embodiment, the NK cell proliferation assay is a short-term proliferation assay, measuring proliferation over the course of less than one week, e.g. 3, 4, 5 or 6 days, e.g. as described in the Examples herein. In one embodiment, the NK cell proliferation assay is a long-term proliferation assay, measuring proliferation over the course of more than one week, e.g. at least 10, 12 or 14 days, e.g. as described in the Examples herein.
In one embodiment, a 4-1 BBL ECD mutein provided herein, when present in a homotrimeric fusion protein comprising three identical 4-1 BBL ECD mutein monomers connected through (GGGGS)4 polypeptide linkers, which homotrimer is present in a conjugate with a monoclonal antibody against a TAA (e.g. trastuzumab), which conjugate further comprises IL-21 , exhibits a pECso for induction of proliferation of NK cells in a 5-day NK cell proliferation assay in the presence of tumor cells expressing the TAA (e.g. SKOV-3 cells), that is not more than 0.25 log less than the pECso of a corresponding control conjugate comprising wild-type 4-1 BBL ECD in the same assay. Hence, in one embodiment, the 4-1 BBL ECD mutein comprises at least one amino acid substitution
selected from the group consisting of: A154D; A154E; a combination of A154D and G155Q; V153Q; Q227E; Q227R; L101 N; Y110Q; and V100Q; or the 4-1 BBL ECD mutein comprises no other amino acid sequence modification than the at least one amino acid substitution selected from the group consisting of: A154D; A154E; a combination of A154D and G155Q; V153Q; Q227E; Q227R; L101 N; Y110Q; and V100Q.
In one embodiment, a 4-1 BBL ECD mutein provided herein, when present in a homotrimeric fusion protein comprising three identical 4-1 BBL ECD mutein monomers connected through (GGGGS)4 polypeptide linkers, which homotrimer is present in a conjugate with trastuzumab, which conjugate further comprises IL-21 , exhibits a pECso for induction of proliferation of NK cells in a 5- day NK cell proliferation assay in the presence of SKOV3 tumor cells, that is not more than 0.10 log less than the pECso of a corresponding control conjugate comprising wild-type 4-1 BBL ECD in the same assay. Hence, in one embodiment, the 4-1 BBL ECD mutein comprises at least one amino acid substitution selected from the group consisting of: A154D; A154E; a combination of A154D and G155Q; V153Q; Q227E; L101 N; Y110Q; and V100Q; or the 4-1 BBL ECD mutein comprises no other amino acid sequence modification than the at least one amino acid substitution selected from the group consisting of: A154D; A154E; a combination of A154D and G155Q; V153Q; Q227E; L101 N; Y110Q; and V100Q.
In one embodiment, a 4-1 BBL ECD mutein provided herein, when present in a homotrimeric fusion protein comprising three identical 4-1 BBL ECD mutein monomers connected through (GGGGS)4 polypeptide linkers, which homotrimer is present in a conjugate with trastuzumab, which conjugate further comprises IL-21 , exhibits a pECso for induction of proliferation of NK cells in a 5- day NK cell proliferation assay in the presence of SKOV3 tumor cells, that is not more than 0.05 log less than the pECso of a corresponding control conjugate comprising wild-type 4-1 BBL ECD in the same assay. Hence, in one embodiment, the 4-1 BBL ECD mutein comprises at least one amino acid substitution selected from the group consisting of: A154D; A154E; and V100Q; or the 4-1 BBL ECD mutein comprises no other amino acid sequence modification than the at least one amino acid substitution selected from the group consisting of: A154D; A154E; a combination of A154D and G155Q; and V100Q.
In one embodiment, a 4-1 BBL ECD mutein provided herein, when present in a homotrimeric fusion protein comprising three identical 4-1 BBL ECD mutein monomers connected through (GGGGS)4 polypeptide linkers, which homotrimer is present in a conjugate with trastuzumab, which conjugate further comprises IL-21 , induces a maximal proliferation of NK cells at a saturating concentration of 25 nM of the conjugate in a normalized 5-day NK cell proliferation assay in the presence of SKOV3 tumor cells, which proliferation is at least 70%, 75%, 80%, 85%, 90% or 95% of the proliferation induced by a corresponding control conjugate comprising wild-type IL-21 and a trimer of wild type 4-1 BBL ECD in the same assay. Hence, in one embodiment, the 4-1 BBL ECD mutein comprises at least one amino acid substitution selected from the group consisting of: A154D; A154E; a combination of A154D and G155Q; V153Q; Q227E; Q227R; L101 N; Y110Q; Q230K; and V100Q; or the 4-1 BBL ECD mutein comprises no other amino acid sequence modification than the
at least one amino acid substitution selected from the group consisting of: A154D; A154E; a combination of A154D and G155Q; V153Q; Q227E; Q227R; L101 N; Y110Q; Q230K; and V100Q.
In one embodiment, a 4-1 BBL ECD mutein provided herein, when present in a homotrimeric fusion protein comprising three identical 4-1 BBL ECD mutein monomers connected through (GGGGS)4 polypeptide linkers, which homotrimer is present in a conjugate with trastuzumab, which conjugate further comprises IL-21 , induces a maximal proliferation of NK cells at a saturating concentration of 25 nM of the conjugate in a normalized 5-day NK cell proliferation assay in the presence of SKOV3 tumor cells, which proliferation is at least 75% of the proliferation induced by a corresponding control conjugate comprising wild-type IL-21 and a trimer of wild type 4-1 BBL ECD in the same assay. Hence, in one embodiment, the 4-1 BBL ECD mutein comprises at least one amino acid substitution selected from the group consisting of: A154D; A154E; V153Q; Q227E; L101 N; Y110Q; Q230K; and V100Q; or the 4-1 BBL ECD mutein comprises no other amino acid sequence modification than the at least one amino acid substitution selected from the group consisting of: A154D; A154E; a combination of A154D and G155Q; V153Q; Q227E; L101 N; Y110Q; Q230K; and V100Q.
In one embodiment, a 4-1 BBL ECD mutein provided herein, when present in a homotrimeric fusion protein comprising three identical 4-1 BBL ECD mutein monomers connected through (GGGGS)4 polypeptide linkers, which homotrimer is present in a conjugate with trastuzumab, which conjugate further comprises IL-21 , induces a maximal proliferation of NK cells at a saturating concentration of 25 nM of the conjugate in a normalized 5-day NK cell proliferation assay in the presence of SKOV3 tumor cells, which proliferation is at least 80% of the proliferation induced by a corresponding control conjugate comprising wild-type IL-21 and a trimer of wild type 4-1 BBL ECD in the same assay. Hence, in one embodiment, the 4-1 BBL ECD mutein comprises at least one amino acid substitution selected from the group consisting of: A154D; A154E; a combination of A154D and G155Q; V153Q; Q227E; L101 N; Y110Q; and Q230K; or the 4-1 BBL ECD mutein comprises no other amino acid sequence modification than the at least one amino acid substitution selected from the group consisting of: A154D; A154E; a combination of A154D and G155Q; V153Q; Q227E; L101 N; Y110Q; and Q230K.
In one embodiment, a 4-1 BBL ECD mutein provided herein, when present in a homotrimeric fusion protein comprising three identical 4-1 BBL ECD mutein monomers connected through (GGGGS)4 polypeptide linkers, which homotrimer is present in a conjugate with trastuzumab, which conjugate further comprises IL-21 , induces a maximal proliferation of NK cells at a saturating concentration of 25 nM of the conjugate in a normalized 5-day NK cell proliferation assay in the presence of SKOV3 tumor cells, which proliferation is at least 85% of the proliferation induced by a corresponding control conjugate comprising wild-type IL-21 and a trimer of wild type 4-1 BBL ECD in the same assay. Hence, in one embodiment, the 4-1 BBL ECD mutein comprises at least one amino acid substitution selected from the group consisting of: A154D; A154E; a combination of A154D and G155Q; V153Q; and Q227E; or the 4-1 BBL ECD mutein comprises no other amino acid sequence modification than the at least one amino acid substitution selected from the group consisting of: A154D; A154E; a combination of A154D and G155Q; V153Q; and Q227E.
In one embodiment, a 4-1 BBL ECD mutein provided herein, when present in a homotrimeric fusion protein comprising three identical 4-1 BBL ECD mutein monomers connected through (GGGGS)4 polypeptide linkers, which homotrimer is present in a conjugate with trastuzumab, which conjugate further comprises IL-21 , induces a maximal proliferation of NK cells at a saturating concentration of 25 nM of the conjugate in a normalized 5-day NK cell proliferation assay in the presence of SKOV3 tumor cells, which proliferation is at least 95% of the proliferation induced by a corresponding control conjugate comprising wild-type IL-21 and a trimer of wild type 4-1 BBL ECD in the same assay. Hence, in one embodiment, the 4-1 BBL ECD mutein comprises at least one amino acid substitution selected from the group consisting of: A154D and A154E; a combination of A154D and G155Q; and the 4-1 BBL ECD mutein comprises no other amino acid sequence modification than the at least one amino acid substitution selected from the group consisting of: A154D; a combination of A154D and G155Q; and A154E.
In one embodiment, there is provided a 4-1 BBL ECD mutein as described herein, which, when present in a conjugate with an antigen-binding protein that specifically binds a (target) antigen, as a result of the reduced affinity of the 4-1 BBL ECD mutein for 4-1 BB, produces reduced (little or no) agonist activity at a 4-1 BB expressed at the surface of a cell, in the absence of the antigen or cells carrying the antigen. However, when the conjugate is bound to the antigen or to cells carrying the antigen, the 4-1 BBL ECD mutein in the conjugate shows significant agonist activity. This activity is the result of the 4-1 BBL ECD mutein being present in high local density on the surface of the target cells, which leads to an enhanced apparent affinity forthe 4-1 BB on local NK cells (see Figure 1), primarily through the mechanism of avidity. As such, a 4-1 BBL ECD mutein as described herein in a conjugate with an antigen-binding protein broadens the therapeutic window as compared to a corresponding conjugate comprising a wild type 4-1 BBL ECD. The term “therapeutic window” is herein understood as the ratio (or fold-difference) of the EC50 values obtained from a functional assay (e.g., a proliferation assay) comparing conditions in which cancer cells are absent to conditions in which they are present. A therapeutic window of 10 (or 1 log) would mean that the EC50 without cancer cells was 10 times higher ( a less potent effect) as compared to when the cancer cells were present. Upon systemic administration the conjugate comprising the 4-1 BBL ECD mutein will have little or no effect on cells in the periphery, including T-, B- or NK cells, while remaining effective in stimulating these immune cells, in particular NK cells, at a tumor site or a site of infection or inflammation. This is because the target antigen bound by the antigen-binding protein is present at high local concentrations only in these specific areas, enabling the effect of avidity.
Thus, in one embodiment, there is provided an 4-1 BBL ECD mutein as described herein, wherein the 4-1 BBL ECD mutein, when present in a conjugate with an antigen binding protein that specifically binds an antigen, wherein the conjugate optionally further comprises IL-21 , has an EC50 in an NK cell proliferation assay in the presence of the antigen or cells expressing the antigen that is, with increasing preference, at least a factor 2, 5, 10, 20, 50, 100, 200, 500, 1 ,000, 2,000, 5,000, 10,000, 20,000, 50,000 or 100,000 lower than the EC50 in a corresponding NK cell proliferation assay in the absence of the antigen or cells expressing the antigen.
In one embodiment, the difference in induction of NK cell proliferation between the presence and absence of the antigen is determined using a reference multispecific antigen binding protein, such as AVC1 and reference tumor cells such as SK-OV-3 cells expressing HER2. The AVC1 multispecific antigen binding protein consists of a first trastuzumab heavy chain fused to the 4-1 BB ligand extracellular domain (SEQ ID NO: 1 1), a second trastuzumab heavy chain fused to wild type IL-21 (SEQ ID NO: 12) and trastuzumab light chains (SEQ ID NO: 2), wherein the constant regions of the first and second heavy chains are distinguished using knob-in-hole technology (see WO2024/056862). The wild type 4-1 BBL ECD amino acid sequence in the first heavy chain amino acid sequence of SEQ ID NO: 11 can be replaced by an amino acid sequence of an 4-1 BBL ECD mutein to be assayed, e.g. for its ability to induce NK cell proliferation in the presence and absence of tumor cells expressing HER2, such as the SK-OV-3 cells.
In one embodiment, there is provided an 4-1 BBL ECD mutein as described herein, wherein the 4-1 BBL ECD mutein, when present in a multispecific antigen binding protein consisting of i) a first heavy chain comprising the amino acid sequence of SEQ ID NO: 1 1 , wherein the wild type 4- 1 BBL ECD amino acid sequence is replaced by the amino acid sequence of the 4-1 BBL ECD mutein; ii) a second heavy chain comprising the amino acid sequence of SEQ ID NO: 12; and iii) light chains comprising the amino acid sequence of SEQ ID NO: 2, has an EC50 in an NK cell proliferation assay in the presence of SK-OV-3 cells that is, with increasing preference, at least a factor 10, 25, 50, 100, 200, 500, 1 ,000, 2,000, 5,000, 10,000, 20,000, 50,000 or 100,000 lower than the EC50 in a corresponding NK cell proliferation assay in the absence of the SK-OV-3 cells.
In one embodiment, there is provided an 4-1 BBL ECD mutein as described herein, wherein the 4-1 BBL ECD mutein, when present in a multispecific antigen binding proteins consisting of i) a first heavy chain comprising the amino acid sequence of SEQ ID NO: 1 1 , wherein the wild type 4- 1 BBL ECD amino acid sequence is replaced by the amino acid sequence of the 4-1 BBL ECD mutein; ii) a second heavy chain comprising the amino acid sequence of SEQ ID NO: 12; and iii) light chains comprising the amino acid sequence of SEQ ID NO: 2, produces a fold-difference in EC50 in an NK cell proliferation assay in the presence vs absence of SK-OV-3 cells that is, with increasing preference, at least a factor 2, 5, 10, 20, 50, 100, 200, 500, 1 ,000, 2,000 or 5,000 higher than the difference in EC50 in an NK cell proliferation assay in the presence vs absence of SK-OV- 3 cells as produced by a reference multispecific antigen binding proteins consisting of i) a first heavy chain comprising the amino acid sequence of SEQ ID NO: 11 ; a second heavy chain comprising the amino acid sequence of SEQ ID NO: 12; and iii) light chains comprising the amino acid sequence of SEQ ID NO: 2.
In the above embodiments, the NK cell proliferation assays are preferably performed using NK cells isolated from healthy donors. In the above embodiments, the EC50 values in the NK cell proliferation assays are preferably determined on the basis of the average values using NK cells isolated from at least 5 different healthy donors. In the above embodiments, the NK cell proliferation assays are preferably performed essentially as described in the examples herein.
The reduced affinity of the 4-1 BBL ECD muteins described herein when present in a conjugate with an antigen binding protein increases the therapeutic window as compared to a
corresponding conjugate comprising a wild type 4-1 BBL ECD, while at the same time the ability of a conjugate with an 4-1 BBL ECD mutein to induce NK cell cytotoxicity against cells carrying the antigen that is bound by the antigen binding protein, preferably remains essentially unaffected.
Hence, in one embodiment, there is provided an 4-1 BBL ECD mutein as described herein, wherein the 4-1 BBL ECD mutein, when present in a multispecific antigen binding protein consisting of i) a first heavy chain comprising the amino acid sequence of SEQ ID NO: 11 , wherein the wild type 4-1 BBL ECD amino acid sequence is replaced by the amino acid sequence of the 4-1 BBL ECD mutein; ii) a second heavy chain comprising the amino acid sequence of SEQ ID NO: 12; and iii) light chains comprising the amino acid sequence of SEQ ID NO: 2, has an EC50 in an NK cell cytotoxicity assay in the presence of SK-OV-3 cells that is, with increasing preference, at least equal to, or at Ieast 2-fold, at least 5-fold or at least 10-fold higherthan the EC50 of a reference multispecific antigen binding protein consisting of i) a first heavy chain comprising the amino acid sequence of SEQ ID NO: 11 ; ii) a second heavy chain comprising the amino acid sequence of SEQ ID NO: 12; and iii) light chains comprising the amino acid sequence of SEQ ID NO: 2, in the same assay. The NK cell cytotoxicity assay in the presence of SK-OV-3 cells preferably performed using NK cells isolated from healthy donors. Preferably, the EC50 values in the NK cell cytotoxicity assays are determined on the basis of the average values using NK cells isolated from at least 5 different healthy donors. In the above embodiments, the NK cell cytotoxicity assays are preferably performed essentially as described in the examples herein.
Also the ability of a conjugate between an 4-1 BBL ECD mutein as described herein and an antigen binding protein to support long-term expansion of NK cells in the presence of cells carrying the antigen that is bound by the antigen binding protein, preferably remains essentially unaffected.
Hence, in one embodiment, there is provided an 4-1 BBL ECD mutein as described herein, wherein the 4-1 BBL ECD mutein, when present in a multispecific antigen binding protein consisting of i) a first heavy chain comprising the amino acid sequence of SEQ ID NO: 11 , wherein the wild type 4-1 BBL ECD amino acid sequence is replaced by the amino acid sequence of the 4-1 BBL ECD mutein; ii) a second heavy chain comprising the amino acid sequence of SEQ ID NO: 12; and iii) light chains comprising the amino acid sequence of SEQ ID NO: 2, induces a fold expansion of NK cells in the presence of SK-OV-3 cells in an NK cell expansion assay, that is, with increasing preference, at least equal to, or at least 2-fold, at least 5-fold or at least 10-fold higher than the fold expansion induced by a reference multispecific antigen binding protein consisting of i) a first heavy chain comprising the amino acid sequence of SEQ ID NO: 11 ; ii) a second heavy chain comprising the amino acid sequence of SEQ ID NO: 12; and iii) light chains comprising the amino acid sequence of SEQ ID NO: 2, in the same assay. The NK cell expansion assay in the presence of SK-OV-3 cells preferably performed using NK cells isolated from healthy donors. Preferably, the fold expansion of NK cells in the assays is determined on the basis of the average values using NK cells isolated from at least 5 different healthy donors. In the above embodiments, the NK cell expansion assays are preferably performed essentially as described in the examples herein.
A further advantage of the 4-1 BBL ECD muteins as described herein is that their reduced affinity for 4-1 BB the improves pharmaco-kinetics of therapeutics comprising the 4-1 BBL ECD
muteins. In the body many cells, including T-, B- or NK cells, are present that express 4-1 BB molecules at their surfaces. These 4-1 BB molecules act as a sink for therapeutics comprising a moiety with affinity for 4-1 BB such as a 4-1 BBL ECD mutein. Upon binding to a surface expressed 4-1 BB, the therapeutic comprising the 4-1 BBL-moiety will be internalized and will therefore no longer be available for exerting its therapeutic effect, e.g. in the tumor microenvironment. Hence, the reduced affinity for 4-1 BB of the 4-1 BBL ECD muteins as described herein reduces or prevents their disappearance in this sink and thereby improves pharmaco-kinetics of therapeutics comprising the 4-1 BBL ECD muteins.
In a further aspect, the present disclosure provides a trimeric fusion protein comprising three 4-1 BBL ECD monomers, wherein one, two, or three of the monomers are a 4-1 BBL ECD mutein as described herein above, fused together in a single polypeptide chain, as e.g. described in Fellermeier et al. (2016, supra). In one embodiment, the three 4-1 BBL ECD monomers are connected by polypeptide linkers. In one embodiment, the three 4-1 BBL ECD monomers are connected by polypeptide linkers selected from the group consisting of (GGGGS)i, (GGGGS)2, (GGGGS)3, (GGGGS)4, (GGGGS)5, GGGSGGG, GGSGGGGSGG and G, of which (GGGGS)4 is preferred. Other suitable flexible polypeptide linker(s) are described herein below. In one embodiment, two or three of the 4-1 BBL ECD mutein monomers in the trimeric fusion protein are identical muteins. In one embodiment, two or three monomers of the 4-1 BBL ECD mutein in the trimeric fusion protein are different muteins. In the trimeric fusion protein, the 4-1 BBL ECD monomer that is not a 4-1 BBL ECD mutein as described herein above, can be a wild type 4-1 BBL ECD monomer, or a 4-1 BBL ECD mutein that is not described herein.
In one embodiment, the present disclosure provides a trimeric fusion protein comprising three monomers of a 4-1 BBL ECD mutein as described herein above, fused together in a single polypeptide chain, as e.g. described in Fellermeier et al. (2016, supra). In one embodiment, the three 4-1 BBL ECD monomers are connected by polypeptide linkers. In one embodiment, the three 4-1 BBL ECD monomers are connected by polypeptide linkers selected from the group consisting of (GGGGS)i, (GGGGS)2, (GGGGS)3, (GGGGS)4, (GGGGS)S, GGGSGGG, GGSGGGGSGG and G, ofwhich (GGGGS)4 is preferred. Other suitable flexible polypeptide linker(s) are described herein below. In one embodiment, the three monomers of the 4-1 BBL ECD mutein in the trimeric fusion protein are identical muteins. In one embodiment, at least two of the three monomers of the 4-1 BBL ECD mutein in the trimeric fusion protein are different muteins.
In one embodiment, a fusion protein comprising three monomers of a 4-1 BBL ECD mutein, preferably a 4-1 BBL ECD mutein as described herein, fused together in a single polypeptide chain comprise three identical monomers of the 4-1 BBL ECD mutein. In another embodiment of the fusion protein at least one of the monomers differs from the other two, or all three monomers differ from each other.
It is to be understood herein that when reference is made to a 4-1 BBL ECD mutein as described herein this can also refer to a trimeric fusion protein comprising three monomers of such 4-1 BBL ECD muteins.
Conjugates comprising a 4-1 BBL ECD mutein
In a second aspect, the present disclosure provides a conjugate comprising one or more of the 4-1 BBL ECD muteins as described herein conjugated to a heterologous moiety. It is understood herein that the term “a conjugate comprising a 4-1 BBL ECD mutein as described herein” also includes a conjugate comprising a trimeric fusion protein comprising three 4-1 BBL ECD muteins as described herein. As used herein, the term "heterologous moiety" is synonymous with the term "conjugate moiety" and refers to any molecule (chemical or biochemical, naturally-occurring or noncoded) which is different from the 4-1 BBL ECD muteins described herein. Exemplary conjugate moieties that can be linked to any of the 4-1 BBL ECD muteins described herein include but are not limited to a heterologous peptide or polypeptide (including for example, an immunoglobulin or portion thereof (e.g., variable region, CDR, or Fc region)), a targeting agent, a diagnostic label such as a radioisotope, fluorophore or enzymatic label, a polymer including water soluble polymers, or other therapeutic or diagnostic agents. In some embodiments, a conjugate is provided comprising a 4-1 BBL ECD mutein of the present disclosure and an immunoglobulin. The conjugate in some embodiments comprises one or more of the 4-1 BBL ECD muteins described herein and one or more of: a peptide or polypeptide (which is distinct from the 4-1 BBL ECD muteins described herein), a nucleic acid molecule, an antibody or fragment thereof, a polymer, a quantum dot, a small molecule, a toxin, a diagnostic agent, a carbohydrate, an amino acid.
In one embodiment, there is provided a conjugate wherein the heterologous moiety is attached via non-covalent or covalent bonding to the 4-1 BBL ECD mutein as described herein. In exemplary embodiments, the linkage between the 4-1 BBL ECD mutein and the heterologous moiety is achieved via covalent chemical bonds, e.g., peptide bonds, disulfide bonds, and the like, or via physical forces, such as electrostatic, hydrogen, ionic, van der Waals, or hydrophobic or hydrophilic interactions. A variety of non-covalent coupling systems may be used, including, e.g., biotin-avidin, ligand/receptor, enzyme/substrate, nucleic acid/nucleic acid binding protein, lipid/lipid binding protein, cellular adhesion molecule partners; or any binding partners or fragments thereof which have affinity for each other.
In one embodiment, there is provided a conjugate wherein the 4-1 BBL ECD mutein as described herein is linked to a conjugate moiety via direct covalent linkage by reacting targeted amino acid residues of the 4-1 BBL ECD mutein with an organic derivatizing agent that is capable of reacting with selected side chains or the N- or C-terminal residues of these targeted amino acids. Reactive groups on the 4-1 BBL ECD mutein or conjugate moiety include, e.g., an aldehyde, amino, ester, thiol, a-haloacetyl, maleimido or hydrazino group. Derivatizing agents include, for example, maleimidobenzoyl sulfosuccinimide ester (conjugation through cysteine residues), N- hydroxysuccinimide (through lysine residues), glutaraldehyde, succinic anhydride or other agents known in the art. Alternatively, the conjugate moieties can be linked to the 4-1 BBL ECD mutein indirectly through intermediate carriers, such as polysaccharide or polypeptide carriers. Examples of polysaccharide carriers include aminodextran. Examples of suitable polypeptide carriers include polylysine, polyglutamic acid, polyaspartic acid, co-polymers thereof, and mixed polymers of these
amino acids and others, e.g., serines, to confer desirable solubility properties on the resultant loaded carrier.
Cysteinyl residues are most commonly reacted with a-haloacetates (and corresponding amines), such as chloroacetic acid, chloroacetamide to give carboxymethyl or carboxyamidomethyl derivatives. Cysteinyl residues also are derivatized by reaction with bromotrifluoroacetone, alphabromo- p-(5-imidozoyl)propionic acid, chloroacetyl phosphate, N-alkylmaleimides, 3-nitro-2-pyridyl disulfide, methyl 2-pyridyl disulfide, p-chloromercuribenzoate, 2-chloromercuri-4-nitrophenol, or chloro-7- nitrobenzo-2-oxa-l ,3-diazole.
Histidyl residues are derivatized by reaction with diethylpyrocarbonate at pH 5.5-7.0 because this agent is relatively specific for the histidyl side chain. Para-bromophenacyl bromide also is useful; the reaction is preferably performed in 0.1 M sodium cacodylate at pH 6.0.
Lysinyl and amino-terminal residues are reacted with succinic or other carboxylic acid anhydrides. Derivatization with these agents has the effect of reversing the charge of the lysinyl residues. Other suitable reagents for derivatizing alpha-amino-containing residues include imidoesters such as methyl picolinimidate, pyridoxal phosphate, pyridoxal, chloroborohydride, trinitrobenzenesulfonic acid, O-methylisourea, 2,4-pentanedione, and transaminase-catalyzed reaction with glyoxylate.
Arginyl residues are modified by reaction with one or several conventional reagents, among them phenylglyoxal, 2,3-butanedione, 1 ,2-cyclohexanedione, and ninhydrin. Derivatization of arginine residues requires that the reaction be performed in alkaline conditions because of the high pKa of the guanidine functional group. Furthermore, these reagents may react with the groups of lysine as well as the arginine epsilon-amino group.
The specific modification of tyrosyl residues may be made, with particular interest in introducing spectral labels into tyrosyl residues by reaction with aromatic diazonium compounds or tetranitromethane. Most commonly, N-acetylimidizole and tetranitromethane are used to form O- acetyl tyrosyl species and 3-nitro derivatives, respectively.
Carboxyl side groups (aspartyl or glutamyl) are selectively modified by reaction with carbodiimides (R-N=C=N-R'), where R and R are different alkyl groups, such as l-cyclohexyl-3-(2- morpholinyl-4-ethyl) carbodiimide or l-ethyl-3-(4-azonia-4,4-dimethylpentyl) carbodiimide.
Furthermore, aspartyl and glutamyl residues are converted to asparaginyl and glutaminyl residues by reaction with ammonium ions.
Other modifications include hydroxylation of proline and lysine, phosphorylation of hydroxyl groups of seryl or threonyl residues, methylation of the alpha-amino groups of lysine, arginine, and histidine side chains (T. E. Creighton, Proteins: Structure and Molecular Properties, W.H. Freeman & Co., San Francisco, pp. 79-86 (1983)), deamidation of asparagine or glutamine, acetylation of the N- terminal amine, and/or amidation or esterification of the C-terminal carboxylic acid group.
Another type of covalent modification involves chemically or enzymatically coupling glycosides to the 4-1 BBL ECD mutein. Sugar(s) may be attached to (a) arginine and histidine, (b) free carboxyl groups, (c) free sulfhydryl groups such as those of cysteine, (d) free hydroxyl groups such as those of serine, threonine, or hydroxyproline, (e) aromatic residues such as those of
tyrosine, or tryptophan, or (f) the amide group of glutamine. These methods are described in W087/05330 published 11 Sep. 1987, and in Aplin and Wriston, CRC Crit. Rev. Biochem., pp. 259- 306 (1981).
In one embodiment, the heterologous moiety is attached to the 4-1 BBL ECD mutein as described herein via a linker. In some aspects, the linker comprises a chain of atoms from 1 to about 60, or 1 to 30 atoms or longer, 2 to 5 atoms, 2 to 10 atoms, 5 to 10 atoms, or 10 to 20 atoms long. In some embodiments, the chain atoms are all carbon atoms. In some embodiments, the chain atoms in the backbone of the linker are selected from the group consisting of C, O, N, and S. Chain atoms and linkers may be selected according to their expected solubility (hydrophilicity) so as to provide a more soluble conjugate. In some embodiments, the linker provides a functional group that is subject to cleavage by an enzyme or other catalyst or hydrolytic conditions found in the target tissue or organ or cell. In some embodiments, the length of the linker is long enough to reduce the potential for steric hindrance. If the linker is a covalent bond or a peptidyl bond and the conjugate is a polypeptide, the entire conjugate can be a fusion protein. Such peptidyl linkers may be any length. Exemplary peptidyl linkers are from about 1 to 50 amino acids in length, 5 to 50, 3 to 5, 5 to 10, 5 to 15, or 10 to 30 amino acids in length, and are flexible or rigid. Flexible linkers are usually applied when the joined domains require a certain degree of movement or interaction. They are generally composed of small, non-polar (e.g. Gly) or polar (e.g. Ser or Thr) amino acids. The small size of these amino acids provides flexibility and allows for mobility of the connecting functional domains. The incorporation of Ser or Thr can maintain the stability of the linker in aqueous solutions by forming hydrogen bonds with the water molecules, and therefore reduces the unfavorable interaction between the linker and the protein moieties. Preferred flexible linkers have sequences consisting primarily of stretches of Gly and Ser residues (“GS” linker). An example of preferred (and widely used) flexible linker has the sequence of (GGGGS)n (SEQ ID NO: 30). By adjusting the copy number “n”, the length of this GS linker can be optimized to achieve appropriate separation of the functional domains, or to maintain necessary inter-domain interactions. The copy number “n” of this GS linker can e.g. be 1 , 2, 3, 4, 5, 6, 7, 8, 9 or 10. Specific examples of GS linkers include (GGGGS)4 (SEQ ID NO: 31), GGGSGGG (SEQ ID NO: 32), GGSGGGGSGG (SEQ ID NO: 33) and G. Besides the GS linkers, many other flexible linkers have been designed for recombinant fusion proteins. These flexible linkers are also rich in small or polar amino acids such as Gly and Ser, but can contain additional amino acids such as Thr and Ala to maintain flexibility, as well as polar amino acids such as Lys and Glu to improve solubility, such as e.g. the flexible linkers KESGSVSSEQLAQFRSLD (SEQ ID NO: 34) and EGKSSGSGSESKST (SEQ ID NO: 35), that have been applied for the construction of a bioactive scFvs.
In one embodiment, the conjugate is a conjugate that has a 4-1 BBL ECD mutein-valency that is higher than one that is higher than one, which understood to mean that the conjugate comprises more than one, e.g. two, three, four or five 4-1 BBL ECD mutein-moieties. Preferably, more than one 4-1 BBL ECD mutein-moieties are identical 4-1 BBL ECD mutein-moieties.
In one embodiment, the conjugate is a conjugate that has a valency of trimeric 4-1 BBL ECD mutein-fusion proteins that is higher than one that is higher than one, which understood to mean
that the conjugate comprises more than one, e.g. two, three, four or five of such trimeric 4-1 BBL ECD mutein-fusion proteins. Preferably, more than one trimeric 4-1 BBL ECD mutein-fusion proteins are identical trimeric fusion proteins.
Thus, in one embodiment, there is provided a conjugate wherein the heterologous moiety comprises a polypeptide. The polypeptide comprised in the heterologous moiety preferably is a polypeptide distinct from any of the 4-1 BBL ECD muteins described herein. In one embodiment, the conjugate is a fusion polypeptide, fusion protein, a chimeric protein or chimeric polypeptide comprising a 4-1 BBL ECD mutein or a trimeric 4-1 BBL ECD mutein-fusion protein as described herein and an heterologous moiety comprises a polypeptide fused in a single polypeptide chain. Additional descriptions of such conjugates as fusion proteins are provided hereinbelow.
In one embodiment, there is provided a conjugate wherein the heterologous moiety comprises a polypeptide that is an antigen-binding protein or a polypeptide chain of an antigenbinding protein.
In one embodiment, there is provided a conjugate wherein the heterologous moiety comprises an antigen-binding protein or a polypeptide chain of an antigen-binding protein, which antigen-binding protein comprises at least one of: a) at least one of: i) a first antigen-binding region that specifically binds a tumor associated antigen (TAA), that specifically binds an NK cell activating receptor, and ii) a second antigen-binding region that specifically binds a TAA, that specifically binds an NK cell activating receptor; and, b) a third antigen-binding region that has or can have affinity for a surface antigen expressed on natural killer (NK) cells.
An antigen-binding region as used in an antigen binding protein in a conjugate with a 4-1 BBL ECD mutein as described herein, can be derived from any of a variety of immunoglobulin or nonimmunoglobulin scaffolds, for example affibodies based on the Z-domain of staphylococcal protein A, engineered Kunitz domains, monobodies or adnectins based on the 10th extracellular domain of human fibronectin III, anticalins derived from lipocalins, DARPins (designed ankyrin repeat domains), Affilins, multimerized LDLR-A module, avimers or cysteine-rich knottin peptides. See, e.g., Gebauer and Skerra (2009) Current Opinion in Chemical Biology 13:245-255, the disclosure of which is incorporated herein by reference.
In a preferred embodiment, an antigen-binding region as used in an antigen binding protein in a conjugate with a 4-1 BBL ECD mutein as described herein comprises or consists of an immunoglobulin variable region. Such immunoglobulin variable regions can comprise or consist of variable domains that are commonly derived from antibodies (immunoglobulin chains), e.g. in the form of associated VL and VH domains found on two polypeptide chains, such as present in a Fab. Alternatively, immunoglobulin variable domains can comprise or consist of a single chain antigenbinding domain such as a scFv, a VH domain, a VL domain, or an immunoglobulin single variable domain (ISVD) such as a dAb, a V-NAR domain or a VHH domain. An immunoglobulin variable region to be used in an antigen binding protein in a conjugate with a 4-1 BBL ECD mutein as described herein can be a human or humanized immunoglobulin variable region or an immunoglobulin single variable domain as herein defined above.
Antigen-binding regions that specifically bind at least TROP2
Thus, in one embodiment, an antigen binding protein in a conjugate with a 4-1 BBL ECD mutein as described herein comprises at least one of i) a first antigen-binding region that specifically binds a TAA that is TROP2; and, ii) a second antigen-binding region that specifically binds TROP2 or another TAA. In one embodiment, the antigen-binding region that binds a TAA is an antigenbinding region derived from immunoglobulin or non-immunoglobulin scaffolds as defined above. Preferably, the antigen-binding region that specifically binds a TAA comprises or consists of at least one immunoglobulin variable domain. More preferably, the antigen-binding region that specifically binds a TAA comprises or consists of a Fab that specifically binds a TAA or an immunoglobulin single variable domain (ISVD) that specifically binds a TAA. In one embodiment, the antigen-binding region that specifically binds a TAA is an antigen-binding region that binds the TAA with a KD value of no more than 10-3 M or 10-4 M, as may be determined as herein described above.
In one embodiment, the antigen-binding region that specifically binds a TAA comprises or consists of a human or humanized immunoglobulin variable region or immunoglobulin single variable region as herein defined above.
In one embodiment, an antigen binding protein in a conjugate with a 4-1 BBL ECD mutein as described herein comprises two antigen-binding regions that specifically bind a TAA, i.e. a first and a second antigen-binding region. In an antigen binding protein that comprises two antigen-binding regions that specifically bind a TAA, the two antigen-binding regions can bind one and the same TAA, they can bind at least two different TAAs, or they can bind at least two different epitopes on the same TAA. In one embodiment of an antigen binding protein that comprises two antigen-binding regions that specifically bind a TAA, the two antigen-binding regions are identical. Thus, as regards the two antigen-binding regions that specifically bind a TAA, an antigen binding protein in a conjugate with a 4-1 BBL ECD mutein as described herein can be a homodimeric or a heterodimeric antigen binding protein.
As used herein, the term tumor-associated antigen (TAA) refers to an antigen that is differentially expressed by cancer/tumor cells as compared to normal, i.e. non-tumoral cells. Alternatively, a TAA can be an antigen that is expressed by non-tumoral cells (e.g. immune cells) having a pro-tumoral effect (e.g. an immunosuppressive effect), and can thereby be exploited in order to target cancer cells. A TAA can thus be any antigen that potentially stimulates apparently tumor-specific immune responses. Some of these antigens are encoded, although not necessarily expressed, or expressed at lower levels or less frequently, by normal cells. These antigens can be characterized as those which are normally silent (i.e., not expressed) in normal cells, those that are expressed only at certain stages of differentiation and those that are temporally expressed such as embryonic and fetal antigens. Other TAAs are encoded by mutant cellular genes, such as oncogenes (e.g., activated ras oncogene), suppressor genes (e.g., mutant p53), fusion proteins resulting from internal deletions or chromosomal translocations, including neo-antigens. Still other TAAs antigens can be encoded by viral genes such as those carried on RNA and DNA tumor viruses. Still other TAAs can be expressed on immune cells capable of contributing to or mediating
a pro-tumoral effect, e.g. cell that contributes to immune evasion, a monocyte or a macrophage, optionally a suppressor T cell, regulatory T cell, or myeloid-derived suppressor cell.
The TAAs are usually normal cell surface antigens which are either overexpressed or expressed at abnormal times or are expressed by a targeted population of cells. Ideally the target TAA is expressed only on proliferative cells (e.g., tumor cells) or pro-tumoral cells (e.g. immune cells having an immunosuppressive effect), however this is rarely observed in practice. As a result, target antigens are in many cases selected on the basis of differential expression between proliferative/disease tissue and healthy tissue.
In one embodiment, an antigen binding protein in a conjugate with a 4-1 BBL ECD mutein as described herein comprises at least one antigen-binding region that specifically binds the TAA: TROP2.
TROP2 is a transmembrane glycoprotein encoded by the human Tacstd2 gene. The 323 amino acid sequence of human TROP2 described in NCBI accession number NP_002344, the disclosure of which is incorporated herein by reference. The human TROP2 mRNA sequence is described in NCBI accession number NM_002353, the disclosure of which is incorporated herein by reference. TROP2 is an intracellular calcium signal transducer that is differentially expressed in many cancers. TROP2 plays a role in tumor progression by actively interacting with several key molecular signaling pathways traditionally associated with cancer development and progression. Aberrant overexpression of TROP2 has been described in several solid cancers. TROP2 causes cancer cell growth, proliferation, invasion, migration, and survival of cancer cells, which leads to TROP2 being associated with tumor aggressiveness and poor prognosis. These facts make TROP2 a possible prognostic biomarker to identify high-risk patients, as well as an attractive therapeutic target for late-stage diseases.
In one embodiment therefore, an antigen binding protein in a conjugate with a 4-1 BBL ECD mutein as described herein comprises at least one antigen-binding region that specifically binds TROP2, which antigen-binding region comprises a combination of complementarity-determining regions (CDRs) CDR-H1 , CDR-H2, CDR-H3, CDR-L1 , CDR-L2 and CDR-L3 selected from the group consisting of: a) the CDR-H1 , CDR-H2 and CDR-H3 sequences as comprised in SEQ ID NO: 93, and the CDR-L1 , CDR-L2 and CDR-L3 sequences as comprised in SEQ ID NO: 94 (sacituzumab); b) the CDR-H1 , CDR-H2 and CDR-H3 sequences as comprised in SEQ ID NO: 338, and the CDR-L1 , CDR-L2 and CDR-L3 sequences as comprised in SEQ ID NO: 339 (datopotamab); c) the CDR-H1 , CDR-H2 and CDR-H3 sequences as comprised in SEQ ID NO: 540, and the CDR-L1 , CDR-L2 and CDR-L3 sequences as comprised in SEQ ID NO: 541 (AR46A6); d) the CDR-H1 , CDR-H2 and CDR-H3 sequences as comprised in SEQ ID NO: 542, and the CDR-L1 , CDR-L2 and CDR-L3 sequences as comprised in SEQ ID NO: 543 (KM4097); and e) the CDR-H1 , CDR-H2 and CDR-H3 sequences as comprised in SEQ ID NO: 544, and the CDR-L1 , CDR-L2 and CDR-L3 sequences as comprised in SEQ ID NO: 545 (K5-70).
In one embodiment therefore, an antigen binding protein in a conjugate with a 4-1 BBL ECD mutein as described herein comprises at least one antigen-binding region that specifically binds TROP2, which antigen-binding region comprises a combination of complementarity-determining
regions (CDRs) CDR-H1 , CDR-H2, CDR-H3, CDR-L1 , CDR-L2 and CDR-L3 selected from the group consisting of: a) a CDR-H1 comprising the sequence of SEQ ID NO: 552, a CDR-H2 comprising the sequence of SEQ ID NO: 553, a CDR-H3 comprising the sequence of SEQ ID NO: 554, a CDR-L1 comprising the sequence of SEQ ID NO: 555, a CDR-L2 comprising the sequence of SEQ ID NO: 556, and a CDR-L3 comprising the sequence of SEQ ID NO: 557 (sacituzumab); b) a CDR-H1 comprising the sequence of SEQ ID NO: 558, a CDR-H2 comprising the sequence of SEQ ID NO: 559, a CDR-H3 comprising the sequence of SEQ ID NO: 560, a CDR-L1 comprising the sequence of SEQ ID NO: 561 , a CDR-L2 comprising the sequence of SEQ ID NO: 562, and a CDR-L3 comprising the sequence of SEQ ID NO: 563 (datopotamab); c) a CDR-H1 comprising the sequence of SEQ ID NO: 564, a CDR-H2 comprising the sequence of SEQ ID NO: 565, a CDR-H3 comprising the sequence of SEQ ID NO: 566, a CDR-L1 comprising the sequence of SEQ ID NO: 567, a CDR-L2 comprising the sequence of SEQ ID NO: 568, and a CDR-L3 comprising the sequence of SEQ ID NO: 569 (KM4097); d) a CDR-H1 comprising the sequence of SEQ ID NO: 570, a CDR-H2 comprising the sequence of SEQ ID NO: 571 , a CDR-H3 comprising the sequence of SEQ ID NO: 572, a CDR-L1 comprising the sequence of SEQ ID NO: 573, a CDR-L2 comprising the sequence of SEQ ID NO: 574, and a CDR-L3 comprising the sequence of SEQ ID NO: 575 (AR47A6.4.2); and, e) a CDR-H1 comprising the sequence of SEQ ID NO: 576, a CDR-H2 comprising the sequence of SEQ ID NO: 577, a CDR-H3 comprising the sequence of SEQ ID NO: 578, a CDR-L1 comprising the sequence of SEQ ID NO: 579, a CDR-L2 comprising the sequence of SEQ ID NO: 580, and a CDR-L3 comprising the sequence of SEQ ID NO: 581 (K5-70).
In one embodiment, an antigen binding protein in a conjugate with a 4-1 BBL ECD mutein as described herein comprises at least one antigen-binding region that specifically binds TROP2, which antigen-binding region comprises a combination of variable heavy (VH) and variable light (VL) domains selected from the group consisting of: a) the VH sequence as comprised in SEQ ID NO: 138 and the VL sequence as comprised in SEQ ID NO: 139 (sacituzumab); b) the VH sequence as comprised in SEQ ID NO: 338, and the VL sequence as comprised in SEQ ID NO: 339 (datopotamab); c) the VH sequence as comprised in SEQ ID NO: 540, and the VL sequence as comprised in SEQ ID NO: 541 (AR46A6); d) the VH sequence as comprised in SEQ ID NO: 542, and the VL sequence as comprised in SEQ ID NO: 543 (KM4097); and, e) the VH sequence as comprised in SEQ ID NO: 544, and the VL sequence as comprised in SEQ ID NO: 545 (K5-70).
In one embodiment, an antigen binding protein in a conjugate with a 4-1 BBL ECD mutein as described herein comprises two antigen-binding regions that specifically bind a TAA, i.e. a first and a second antigen-binding region, wherein the first antigen-binding region first is an antigen-binding region that specifically binds TROP2 as herein defined above, and wherein a second antigenbinding region binds a TAA selected from the group consisting of: 5T4, ADAM9, ADAM10, ADAM12, AFP, ALK, ALPP, ALPP2, ALPPL2, AXL, Angiopoietin-2, Apelin receptor, B7-H3, B7-H4, B7-H6, B7.1 , B7.2, BCMA, BTLA, CA125, CAIX, CCR4, CCR6, CCR7, CD123, CD133, CD138, CD142, CD147, CD166, CD171 , CD19, CD2, CD20, CD205, CD22, CD228, CD24, CD25, CD27, CD276, CD3, CD30, CD317, CD33, CD38, CD3E, CD4, CD40, CD44v6, CD45, CD46, CD47, CD52, CD56, CD70, CD71 , CD73, CD74, CD79, CD79B, CD80, CD80/CD86, CDCP1 , CDH3, CDK4, CEA,
CEACAM5, CLDN18, CLEC14A, CLEC4, CSF1 R, CSPG4, CT-7, CTLA4, Cadherin 17, Cadherin 6, CanAg, Claudin 18.2, Claudin 6, cMet, Connexin 37, Cripto-1 , Crypto, DC3, DLK1 , DLL3, DLL4, DR5, E-cadherin, E-selectin, EBV-encoded nuclear antigen (EBNA)-I, EDA, EDB, EDNRB, EGF, EGFR, EGFRvlll, EPCAM, EPHA4, EphAIO, EphA2, EphA3, EphB2, EphB4, ExtradomainB (EDB) fibronectin, F3, FAP, FGFR2, FGFR2b, FGFR4, FOLH1 , FOLR1 , FRa, FSHR, FcRL5/FcRH5, Fibronectin extra-domain B, Flt3, GFRa4, GM3, GPCR5D, GPRC5D, GRP78, GUCY2C, Glycoprotein NMB, Glypican 1 , Glypican 2, Glypican 3, GnT-V, HAVCR2, HER-2/ERBB2, HER- 3/ERBB3, HER-4/ERBB4, HER2, HER3, HER4, HLA-G, HSP70, ICAM-1 , IFNG, IGF-1 R, IL-1 accessory protein, IL-6 receptor, IL-8 receptor, IL13Ra2, IL3RA, Ig-idiotype, Integrin beta 6, KAAG- 1 , KDR, KLK2, KLRC1 , Killer Ig-Like Receptor, Killer Ig-Like Receptor 3DL2 (KIR3DL2), L1-CAM, L1 CAM, LAG3, LAGE-1 , LGR5, LIV-1 , Lewis-Y, MART-1 /Melan-A, MET, MIC-A/B, MICB, MISIIR, MMP2, MS4A1 , MSLN, MUC1 , MUC1-C, MUC16, MUM-1 , Melanotransferrin, Mesothelin, Mud 6, NAG, NKG2D, NT5E, NTRKR1 (EC 2.7.10.1), NaPi2b, Nectin-4, OLR1 , 0X40, P-cadherin, P1A, PD-L1 , PD1 , PDGF, PDGF alpha receptor, PDGF beta receptor, PDGFR, PDGFRA, PLAUR, PRAME, PSCA, PSMA, PTK7, PTPRC, PVRL4, Plexin-A1 , RAGE, ROBO1 , ROR1 , ROR2, SCP- 1 , SEZ6, SLAMF7, SLC3A2, SSTR2, SSX-1 , SSX-2 (HOM-MEL-40), SSX-4, SSX-5, STEAP1 , STEAP2, T-cell receptor/CD3-zeta chain, TACSTD2, TGF-alpha, TIGIT, Tissue factor/TF, TM4SF1 , TMEFF2, TNFRSF10B, TNFRSF17, TNFRSF4, TNFRSF8, TRAILR1 , TRAILR2, TROP2, TSHR, TYRP1 , VEGF, VEGFA, VEGFR1 , VEGFR2, VH1/VL1 , VH2A/L2, VH3A/L3, a GAGE-tumor antigen, a GD2 ganglioside, a GM2 ganglioside, a RAET1 protein, a UL16-binding protein (ULBP), a heterodimeric receptor comprised of at least one HER subunit, a human papillomavirus protein, avp1 integrins, avp3 integrins, avp6 integrins, adenomatous polyposis coli protein (APC), adenosine deaminase-binding protein (ADAbp), anti-Mullerian hormone Type II receptor, brain glycogen phosphorylase, c-erbB-2,, colorectal associated antigen (CRC)-C017-1A/GA733, gastrin releasing peptide receptor antigen, gp100, gp75, gpA33, hCG, human papillomavirus protein, integrin receptors, mmp9, muc17, p15, prostate specific antigen (PSA), protein tyrosine kinase 7(PTK7), receptor protein tyrosine kinase 3 (TYRO-3), sVE-cadherin, scatter factor receptor kinase, a-catenin, a-fetoprotein, allbp3-integrins, p-catenin, and y-catenin, although this is not intended to be exhaustive.
An antigen-binding region with affinity for a surface antigen expressed on NK cells
In one embodiment, an antigen binding protein in a conjugate with a 4-1 BBL ECD mutein as described herein, can further comprise a third antigen-binding region, which is an antigen-binding region that has or can have affinity for a surface antigen expressed on NK cells.
In one embodiment of the an antigen binding protein in a conjugate with a 4-1 BBL ECD mutein as described herein, the third antigen-binding region that has or can have affinity for a surface antigen expressed on NK cells comprises or consists of an immunoglobulin Fc region, or at least a portion thereof that binds the type III Fey receptor (FcyRllla) as expressed on (human) NK cells, also referred to herein as CD16A. CD16A is an immunoglobulin gamma Fc region receptor (FcyRllla) that is expressed on NK cells and through which NK cells recognize IgG that is bound to
the surface of a pathogen-infected or TAA-expressing target cell. Any naturally occurring isoform, allele, ortholog or variant is encompassed by the term CD16A polypeptide (e.g., an CD16A polypeptide that is at least 90%, at least 95%, at least 98%, at least 99% or 100% identical to SEQ ID NO: 55, or a contiguous sequence of at least 20, at least 30, at least 50, at least 100 or at least 200 amino acid residues thereof). The 254 amino acid residue sequence of human CD16A is shown in SEQ ID NO: 55, which corresponds to UniProt accession no. P08637, the disclosure of which is incorporated herein by reference.
In one embodiment, the immunoglobulin Fc region at least comprises at least one of a CH2 and CH3 domain. In one embodiment, the immunoglobulin Fc region at least comprises at least one of a CH2 and CH3 domain and a hinge region. In one embodiment, the immunoglobulin Fc region comprises or consists of a hinge region and a CH2 and CH3 domain. In one embodiment, the immunoglobulin Fc region is a dimeric Fc region or at least a portion thereof that binds CD16A.
In one embodiment, an Fc region or portion thereof that binds CD16A be a wild-type region or portion thereof.
In one embodiment, an Fc region or portion thereof that binds CD16A can be modified to enhance or reduce its binding affinity to CD16A. Within the Fc region, CD16A binding is mediated by the hinge region and the CH2 domain. For example, within human lgG1 , the interaction with CD16 is primarily focused on amino acid residues D265 - E269, N297 - T299, A327 - I332, L 234 - S239, and carbohydrate residue N-acetyl-D-glucosamine in the CH2 domain (see, Sondermann et al., 2000 Nature, 406(6793):267-273). Based on the known domains, mutations can be selected to enhance or reduce the binding affinity to CD16A, such as by using phage-displayed libraries or yeast surface-displayed cDNA libraries or can be designed based on the known three-dimensional structure of the interaction. In one embodiment, the Fc region or portion is lgG2.
Thus, in one embodiment, where the antigen binding protein is intended to have increased affinity for CD16A, an Fc region or portion thereof that binds CD16A, can comprise a modification to increase affinity for CD16A. Thus, an Fc region or portion thereof that binds CD16A, can comprise one or more amino acid modifications (e.g. amino acid substitutions, deletions, insertions) which increase binding to (human) CD16A and optionally another receptor such as FcRn. Typical modifications include modified human lgG1 -derived constant regions comprising at least one amino acid modification (e.g. substitution, deletions, insertions), and/or altered types of glycosylation, e.g., hypofucosylation. A modification can, for example, increase binding of an Fc region to FcyRllla (CD16A) on NK cells. Examples of modifications are provided in US 10,577,419, the disclosure of which is incorporated herein by reference. Specific mutations (in lgG1 Fc regions) which enhance FcyRllla (CD16A) binding, include E333A, S239D/I332E and S239D/A330L/I332E.
In one embodiment, the antigen binding protein in a conjugate with a 4-1 BBL ECD mutein as described herein comprises an Fc region or portion thereof that binds CD16A comprising at least one amino acid modification (for example, 1 , 2, 3, 4, 5, 6, 7, 8, 9, or more amino acid modifications) relative to a wild-type Fc region, such that the molecule has enhanced binding affinity for (human) CD16A relative to a molecule comprising a wild-type Fc region, optionally wherein the variant Fc region comprises a substitution at any one or more of positions 239, 298, 330, 332, 333 and/or 334
(e.g. S239D, S298A, A330L, I332E, E333A and/or K334A substitutions), optionally wherein the variant Fc region comprises a substitution at residues S239 and I332, e.g. a S239D and I332E substitution (Kabat EU numbering).
In one embodiment, the antigen binding protein in a conjugate with a 4-1 BBL ECD mutein as described herein comprises an Fc region or portion thereof that binds CD16A comprising altered glycosylation patterns that increase binding affinity for (human) CD16A. Such carbohydrate modifications can be accomplished by, for example, by expressing a nucleic acid encoding the antigen binding protein in a host cell with altered glycosylation machinery. Cells with altered glycosylation machinery are known in the art and can be used as host cells in which to express recombinant antibodies to thereby produce an antibody with altered glycosylation. See, for example. Shields, R.L. et al. (2002) J. Biol. Chem. 277:26733-26740; Umana et al. (1999) Nat. Biotech. 17:176-1 , as well as, European Patent No: EP 1 ,176,195; WO 06/133148; WO 03/035835; WO 99/54342, each of which is incorporated herein by reference in its entirety. In one embodiment, the antigen binding protein comprises one or more hypofucosylated constant regions. Such an antigen binding protein can comprise an amino acid alteration or cannot comprise an amino acid alteration and/or may be expressed or synthesized or treated under conditions that result in hypofucosylation. In one embodiment, in a composition comprising the antigen binding protein in a conjugate with a 4-1 BBL ECD mutein as described herein, at least 20, at least 30, at least 40, at least 50, at least 60, at least 75, at least 85, at least 90, at least 95% or substantially all of the antigen binding proteins have a constant region comprising a core carbohydrate structure (e.g. complex, hybrid and high mannose structures) which lacks fucose. In one embodiment, there is provided an antigen binding protein which is free of N-linked glycans comprising a core carbohydrate structure having fucose. The core carbohydrate will preferably be a sugar chain at Asn297.
In one embodiment, the antigen binding protein in a conjugate with a 4-1 BBL ECD mutein as described herein comprises an Fc region or portion thereof that binds CD16A that is modified to have increased binding affinity for CD16A, has a binding affinity for human CD16A that is at least 1 , 2 or 3 log greater than that of a conventional or wild-type human IgG 1 antibody, e.g., as assessed by surface plasmon resonance.
In another embodiment, where an antigen binding protein is intended to have reduced affinity for CD16A, a CH2 and/or CH3 domain, an Fc region or portion thereof that binds CD16A, can comprise a modification to decrease affinity for CD16A. For example, CH2 mutations in a dimeric Fc region protein at reside N297 (Kabat numbering) can eliminate CD16A binding. Other modifications in the Fc region that reduce or eliminate binding to CD16A include the L234A/L235A modification (also known as “LALA”), the L235A/G237A modification (also known as “LAGA” and described in Liu et al., Antibodies. 2020;9(4):64; Szapacs et al., Bioanalysis. 2023;15(16):955-6), and the L234A/L235A/P329G modification (also known as LALAPG) and which more completely abrogates CD16 binding compared to the LALA modification. In embodiments wherein an antigen binding protein in a conjugate with an 4-1 BBL ECD mutein as described herein comprises an antigen-binding region that specifically binds an epitope of a y6 TCR, it is preferred that the antigen binding protein comprises an Fc region that is modified to reduce or eliminate binding to CD16A.
Modification of the Fc region that reduce or eliminate its binding to CD16A can be useful to prevent or at least reduce the “sink effect”, wherein at least a fraction of the administered amount of multispecific antigen binding protein is lost by binding to NK cells or monocytes. Modification of the Fc region that reduce or eliminate its binding to CD16A can also be useful in an antigen binding protein to further attenuate apparent affinity to NK cells reducing activity in absence of target cells. Modification of the Fc region that reduce or eliminate its binding to CD16A can also be useful in an antigen binding protein to reduce or avoid NK cell fratricide. The lack of NK cell fratricide can be an advantageous feature for the antigen binding protein described herein. NK cell cross-linking with NK cells or other immune cells is expected to reduce therapeutic efficacy of NK cell-engagement. Most importantly, cross-linking of a NK cell with one or more NK cells or other immune cells through bivalent or multivalent interactions with FcRy or in combination with a second immune cell antigen (e.g. NKp46, NKG2D, NKp30, SLAMF7 or CD38) can cause immune cell activation. This might lead to induction of target cell-driven fratricide or immune cell killing (e.g. NK-NK cell lysis), ultimately resulting in efficient NK cell depletion in vivo, as previously described for a CD16-directed murine IgG antibody (3G8), the CD38-directed antibody daratumumab and other approaches (Choi et al 2008 Immunology 124 (2) 215-22; DOI: 10.111 l/j.l365-2567.2007.02757.x; Yoshida 2010 Front. Microbiol 1 : 128 DOI: 10.3389/fmicb.2010.00128; Wang et al 2018 Clin Cancer Res, 24(16): 4006- 4017; DOI: 10.1158/1078-0432. CCR-17-3117; His et al 2008; Nakamura 2013 PNAS; 110(23) 9421-9426; DOI: 10.1073/pnas.1300140110; Breman et al 2018 Front Immunol, 12(9)2940; DOI: 10.3389/fimmu.2018.02940).
The person of skill in the art will appreciate that other configurations for modification of Fc regions can be implemented. For example, substitutions into human lgG1 or lgG2 residues at positions 233-236 and lgG4 residues at positions 327, 330 and 331 were shown to greatly reduce binding to Fey receptors and thus ADCC and CDC. Furthermore, Idusogie et al. (2000) J. Immunol. 164(8):4178-84 demonstrated that alanine substitution at different positions, including K322, significantly reduced complement activation.
In one embodiment, the antigen binding protein in a conjugate with a 4-1 BBL ECD mutein as described herein comprises an Fc region or portion thereof that binds CD16A that is modified to have reduced binding affinity for CD16A, has a binding affinity for human CD16A that is at least 1 , 2 or 3 log less than that of a conventional or wild-type human lgG1 antibody, e.g., as assessed by surface plasmon resonance.
In one embodiment, the antigen binding protein in a conjugate with a 4-1 BBL ECD mutein as described herein comprises an Fc region that has an amino acid sequence having at least 85, at least 90, at least 91 , at least 92, at least 93, at least 94, at least 95, at least 96, at least 97, at least 98, at least 99 or 100% amino acid identity with an Fc region in at least one of SEQ ID NOs: 1 , 3, 5, 7, 9, 11 - 19 and 23, and preferably having one or more of the above structural and/or functional features.
In one embodiment, in an antigen binding protein in a conjugate with a 4-1 BBL ECD mutein as described herein, third antigen-binding region can be an antigen-binding region that specifically binds an NK cell activating receptor, such as described above for the second antigen-binding
region. In one embodiment, at least one of the second or third antigen-binding region activates the NK cell activating receptor.
Additional agonists for activation of NK cells
In one embodiment, an antigen binding protein in a conjugate with a 4-1 BBL ECD mutein as described herein, comprises at least one further agonist, which further agonist can be at least one further NK cell-activating cytokine, in addition to the 4-1 BBL ECD mutein.
In one embodiment of the conjugate, the further agonist is the heterologous moiety. In another embodiment of the conjugate, the further agonist is directly attached to the heterologous moiety, or the further agonist is attached to the heterologous moiety via a linker, preferably a (flexible) peptidyl linker as described above, e.g. (GGGGS)n, wherein the copy number “n” can be 1 , 2, 3, 4, 5, 6, 7, 8, 9 or 10.
In one embodiment of the conjugate, the further NK cell-activating cytokines can be selected from the group consisting of: an IL-21 receptor agonist, an IL-15 receptor agonist, an IL-2 receptor agonist, a type I interferon (IFN-1) receptor agonist, an IL-12 receptor agonist and an IL-18 receptor agonist, as further detailed below.
In one embodiment, the conjugate with a 4-1 BBL ECD mutein as described herein thus at least comprises an IL-21 receptor (IL-21 R) agonist.
Interleukin 21 (IL-21) is a protein that in humans is encoded by the IL-21 gene (Entrez Gene ID: 59067). IL-21 is a cytokine that has potent regulatory effects on cells of the immune system, including natural killer (NK) cells, and which induces cell division/proliferation in its target cells. Amino acid sequences for human IL-21 precursor (including its signal sequence) are described in NCBI accession numbers NP_001193935 and NP_068575, the disclosures of which are incorporated herein by reference. IL-21 (mature/processed) comprises amino acids 30 - 153 of NP_001193935 or amino acids 30 - 162 of NP_068575 (i.e. SEQ ID NO: 38). IL-21 exerts its effects on target cells through the IL-21 receptor (IL-21 R) is expressed on the surface of T, B and NK cells. IL-21 R is similar in structure to the receptors for other type I cytokines like IL-2R or IL-15 and requires dimerization with the common gamma chain (yc) in order to bind IL-21. IL-21 R is encoded in humans by the IL-21 R gene (Entrez Gene ID: 50615). Amino acid sequences for human IL-21 R are described in NCBI accession numbers NP_068570, NP_851564 and NP_851565, the disclosures of which are incorporated herein by reference.
As used herein, an “IL-21 R agonist” is an agent that has “agonist” activity at the IL-21 receptor, which means that the agent that can cause or increase "IL-21 R signaling". “IL-21 R signaling” refers to an ability of IL-21 R, e.g. when expressed on the surface of T, B and NK cells and triggered by its natural ligand IL-21 , to activate or transduce an intracellular signaling pathway. The “natural ligand IL-21 ” is herein understood as a human wild type IL-21 comprising or consisting of an amino acid sequence as indicated above. When bound to IL-21 , the IL-21 receptor acts through the Jak/STAT pathway, utilizing Jak1 and Jak3 and a STAT3 homodimer to activate its target genes. IL-21 R agonist activity, i.e. changes in IL-21 R signaling activity, can be measured, for example, by assays designed to measure changes in the IL-21 R signaling pathways, e.g. by
monitoring phosphorylation of signal transduction components, assays to measure the association of certain signal transduction components with other proteins or intracellular structures, or in the biochemical activity of components such as kinases, or assays designed to measure expression of reporter genes under control of IL-21 R-sensitive promoters and enhancers, or indirectly by a downstream effect mediated by IL-21 R (e.g. activation of specific cytolytic machinery in NK cells or y6 T cell). A suitable cell-based assay for biological activity of an IL-21 R agonist, is e.g. described in Maurer et al. (mAbs. 2012; 4(1): 69-83.), wherein a murine pre-B-cell line is transfected with both the human IL-21 R and a STAT-responsive luciferase reporter gene. IL-21 R agonist activity can be determined using this cell line by measuring the level of STAT3 phosphorylation using anti-pSTAT3 antibody-conjugated beads and/or by detecting luciferase luminescence, upon contacting the cell line with an IL-21 R agonist. The natural ligand IL-21 can serve as a positive control in an assay for IL-21 R agonist activity and can also be used as a reference for the amount of IL-21 R agonist activity of a given non-natural IL-21 R agonist, such as a conjugate as described herein comprising an IL- 21 R agonist.
In one embodiment, a conjugate as described herein comprises an IL-21 R agonist that has reduced IL-21 R agonist activity as compared to human wild type IL-21 . In one embodiment, the IL- 21 R agonist has an IL-21 R agonist activity that is a factor 2, 5, 10, 20, 50, 100, 200, 500, 1000, 10000, or 100000 less than that of human wild type IL-21 .
In one embodiment, a conjugate as described herein comprises an IL-21 R agonist that has enhanced IL-21 R agonist activity as compared to human wild type IL-21. In one embodiment, the IL-21 R agonist has an IL-21 R agonist activity that is a factor 2, 5, 10, 20, 50, 100, 200, 500, 1000, 10000, or 100000 higher than that of human wild type IL-21 .
In one embodiment, a conjugate as described herein comprises an IL-21 R agonist that is an IL-21 polypeptide comprising an amino acid sequence with at least 50, at least 55, at least 60, at least 65, at least 70, at least 75, at least 80, at least 85, at least 90, at least 95, at least 96, at least 97, at least 98, at least 99, or 100% sequence identity to SEQ ID NO: 38, and preferably having an IL-21 R agonist activity as defined above, and/or preferably having an affinity for the IL-21 R as defined below.
In one embodiment, a conjugate as described herein comprises an IL-21 R agonist of which the affinity for the IL-21 R is reduced or enhanced as compared to human wild type IL-21 . The affinity of an IL-21 R agonist of the affinity for the IL-21 R can be assayed using methods generally known in the art, such as surface plasmon resonance.
In one embodiment, a conjugate as described herein comprises an IL-21 R agonist that has reduced affinity for IL-21 R as compared to human wild type IL-21 . In one embodiment, the affinity of the IL-21 R agonist for IL-21 R is a factor 2, 5, 10, 20, 50, 100, 200, 500 or 1000 less than that of human wild type IL-21 .
In one embodiment, a conjugate as described herein comprises an IL-21 R agonist that has enhanced affinity for IL-21 R as compared to human wild type IL-21 . In one embodiment, the affinity of the IL-21 R agonist for IL-21 R is a factor 2, 5, 10, 20, 50, 100, 200, 500 or 1000 higher than that of human wild type IL-21 .
In one embodiment, a conjugate as described herein comprises an IL-21 R agonist that is IL-
21 or a fragment thereof that has IL-21 R agonist activity. Preferably, the IL-21 R agonist is human IL-21 or a fragment thereof that has IL-21 R agonist activity. In one embodiment, the IL-21 R agonist is an IL-21 mutein with reduced affinity for IL-21 R as compared to human wild type IL-21. IL-21 muteins with reduced affinity for IL-21 R as compared to human wild type IL-21 are described in one of Shen et al. (Front Immunol. 2020; 11 : 832), WO2019/028316, W02006/1 11524, W02008/049920 and the co-pending application by the same applicant with reference no. P62009936EP. Thus, in one embodiment, the IL-21 R agonist is an IL-21 mutein with a mutation (i.e. amino acid substitution, deletion or insertion) of one or more amino acids selected from the group consisting of D4, R5, I8, R9, R1 1 , Q12, L13, 114, D15, 116, D18 Q19, L20, K21 , Y23, R65, I66, I67, N68, V69, S70, K72, K73, L74, K75, R76, K77, P78, P79, S80, E100, E109, R1 10, K112, S113, Q116, K117, 1119, H120, and L123 (amino acid positions referring to position in SEQ ID NO: 38 or a corresponding position in an IL-21 allelic variant).
In one embodiment, the IL-21 R agonist is an IL-21 mutein comprising at least one amino acid substitution, deletion or insertion selected from the group consisting of: (N82- A83- G84- R85- R86- Q87- K88-), L20W, L74D, L20N, I67N, L20S, L13E, I8H, (N63-, E64-, R65- and I66-), L74F, I8V, I8Q, I8F, I8W, I8Y, I8L, D4H, D4R, D4K, D4Q, D4N, R11 E, R11 Q, R11 N, R11Y, Q12K, Q12R, L13S, L13V, L13T, L13G, Q19S, Q19E, Q19K, Q19R, Q19H, Q19G, Q19T, L20D, L20E, L20R, L20K, L20Q, L20H, L20G, K21 H, K21 N, K21 Q, K21 E, K21 D, I67T, I67D, I67E, I67K, I67R, I67Q, I67S, I67G, L74G, L74E, L74K, L74R, L74N, L74Q, L74S, L74P, K75E, K75Q, K75N, K75S, K75-, K76-, K112H, K112N, K112Q, K112E, K112D, N59-, T60-, G61-, N62-, N63-, E64-, R65-, I66-, (N59-, T60-, G61-, N62-, N63-, E64-, R65- and I66-), (K75- and R76-), (K75-, R76- and R77-), G84 insGGGG, and, K75 insX (wherein X is one, two or three amino acids selected from the group consisting of G, S and D). In one embodiment, the IL-21 mutein comprises no other amino acid sequence modification than the at least one amino acid substitution, deletion or insertion selected from the group consisting of: (N82- A83- G84- R85- R86- Q87- K88-), L20W, L74D, L20N, I67N, L20S, L13E, I8H, (N63-, E64-, R65- and I66-), L74F, I8V, I8Q, I8F, I8W, I8Y, I8L, D4H, D4R, D4K, D4Q, D4N, R11 E, R11 Q, R11 N, R11Y, Q12K, Q12R, L13S, L13V, L13T, L13G, Q19S, Q19E, Q19K, Q19R, Q19H, Q19G, Q19T, L20D, L20E, L20R, L20K, L20Q, L20H, L20G, K21 H, K21 N, K21 Q, K21 E, K21 D, I67T, I67D, I67E, I67K, I67R, I67Q, I67S, I67G, L74G, L74E, L74K, L74R, L74N, L74Q, L74S, L74P, K75E, K75Q, K75N, K75S, K75-, K76-, K112H, K112N, K112Q, K112E, K112D, N59-, T60-, G61-, N62-, N63-, E64-, R65-, I66-, (N59-, T60-, G61-, N62-, N63-, E64-, R65- and I66-), (K75- and R76-), (K75-, R76- and R77-), G84 insGGGG, and, K75 insX (wherein X is one, two or three amino acids selected from the group consisting of G, S and D).
In one embodiment, the IL-21 R agonist is an IL-21 mutein with a deletion of at least one, two, three, four, five, six, seven or eight amino acids in the region of N59 to I66, or with a deletion of at least one, two, three, four, five, six, seven or eight amino acids in the region of N82 to R90. In one embodiment, the IL-21 R agonist is an IL-21 mutein with the deletions (N59-, T60-, G61 -, N62-, N63- , E64-, R65- and I66-), (N63-, E64-, R65- and I66-), (N82-, A83-, G84-, R85-, R86-, Q87- and K88- ) and (N82-, A83-, G84-, R85-, R86-, Q87-, K88-, H89- and R90-).
In one embodiment, the IL-21 R agonist is an IL-21 mutein with an insertion of at least two, three or four amino acids immediately C-terminal to G84. In one embodiment, the IL-21 mutein comprises an insertion of, with increasing preference, at least one, two, three or four glycine(s) immediately C-terminal to G84. In one embodiment, the IL-21 R agonist is an IL-21 mutein comprising at least one amino acid substitution, deletion or insertion selected from the substitutions, deletions and insertions listed in Table C.
Table C. Additional substitutions, deletions and insertions for IL-21 muteins.
In one embodiment, the IL-21 mutein binds to a human IL-21 receptor with a reduced affinity, relative to the affinity of wild-type IL-21 for the human IL-21 receptor, wherein preferably the IL-21 mutein binds with reduced affinity to a human IL-21 receptor having an amino acid sequence of SEQ ID NO: 173 or the IL-21 mutein binds with reduced affinity to an IL-21 receptor gamma chain having an amino acid sequence of SEQ ID NO: 174. Hence, in one embodiment, the IL-21 mutein
comprises at least one amino acid substitution or deletion selected from the group consisting of: (N82- A83- G84- R85- R86- Q87- K88-); L20W; L74D; L20N; I67N; L20S; L13E; I8H; (N63- E64- R65- I66-); and L74F. In one embodiment, the IL-21 mutein comprises no other modification than the at least one amino acid substitution or deletion selected from the group consisting of: (N82- A83- G84- R85- R86- Q87- K88-), L20W; L74D; L20N; I67N; L20S; L13E; I8H; (N63- E64- R65- I66-); and L74F.
In one embodiment, an IL-21 mutein provided herein exhibits a binding affinity for the human IL-21 R, expressed as pKo, that is at least 0.5 lower than the pKo of wild-type IL-21 for the IL-21 R. In one embodiment, the IL-21 mutein having at least a 0.5 lower pKo for the human IL-21 R relative to the pKo of wild-type IL-21 for the IL-21 R, is an IL-21 mutein comprising at least one amino acid substitution or deletion selected from the group consisting of: (N82- A83- G84- R85- R86- Q87- K88-); L20W; R5H; I8V; I8Q; Q12K; K73Y; L13E; D4H; I8H; I67N; L74D; L20S; and L20N. In one embodiment, the IL-21 mutein comprises no other amino acid sequence modification than the at least one amino acid substitution or deletion selected from the group consisting of: (N82- A83- G84- R85- R86- Q87- K88-); L20W; R5H; I8V; I8Q; Q12K; K73Y; L13E; D4H; I8H; I67N; L74D; L20S; and L20N.
In one embodiment, an IL-21 mutein provided herein exhibits a binding affinity for the human IL-21 R, expressed as pKo, that is at least 1.0 lower than the pKo of wild-type IL-21 for the IL-21 R, In one embodiment, the IL-21 mutein having at least a 1 .0 lower pKo for the human IL-21 R relative to the pKo of wild-type IL-21 for the IL-21 R, is an IL-21 mutein comprising at least one amino acid substitution or deletion selected from the group consisting of: (N82- A83- G84- R85- R86- Q87- K88-); L20W; R5H; I8Q; Q12K; K73Y; L13E; I67N; L74D; L20S; and L20N. In one embodiment, the IL-21 mutein comprises no other amino acid sequence modification than the at least one amino acid substitution or deletion selected from the group consisting of: (N82- A83- G84- R85- R86- Q87- K88-); L20W; R5H; I8Q; Q12K; K73Y; L13E; I67N; L74D; L20S; and L20N.
In one embodiment, an IL-21 mutein provided herein exhibits a binding affinity for the human IL-21 R, expressed as pKo, that is at least 1.6 lower than the pKo of wild-type IL-21 for the IL-21 R, In one embodiment, the IL-21 mutein having at least a 1 .6 lower pKo for the human IL-21 R relative to the pKo of wild-type IL-21 for the IL-21 R, is an IL-21 mutein comprising at least one amino acid substitution or deletion selected from the group consisting of: (N82- A83- G84- R85- R86- Q87- K88-); L20W; R5H; Q12K; I67N; L74D; L20S; and L20N. In one embodiment, the IL-21 mutein comprises no other amino acid sequence modification than the at least one amino acid substitution or deletion selected from the group consisting of: (N82- A83- G84- R85- R86- Q87- K88-); L20W; R5H; Q12K; I67N; L74D; L20S; and L20N.
In one embodiment, there is provided an antigen binding protein in a conjugate as described herein comprising a combination of a 4-1 BBL ECD mutein as described herein and an IL-21 mutein as described herein, as shown in Table D.
Table D. Combinations of 4-1 BBL muteins and IL-21 muteins conjugated to an antigen binding protein.
In one embodiment, a conjugate as described herein comprises a combination of a 4-1 BBL ECD mutein and an IL-21 mutein, wherein the 4-1 BBL ECD mutein is selected from the group consisting of: 4-1 BBL mutein A154D; 4-1 BBL mutein A154E; 4-1 BBL mutein V153Q; 4-1 BBL mutein Q227E; 4-1 BBL mutein Q227R; 4-1 BBL mutein L101 N; 4-1 BBL mutein Y110Q; 4-1 BBL mutein Q230K; and 4-1 BBL mutein V100Q; and wherein the IL-21 mutein is selected from the group consisting of: IL-21 mutein (N82- A83- G84- R85- R86- Q87- K88-); IL-21 mutein L20W; IL-21 mutein L74D; IL-21 mutein L20N; IL-21 mutein I67N; IL-21 mutein L20S; IL-21 mutein L13E; IL-21 mutein I8H; IL-21 mutein (N63- E64- R65- I66-); and IL-21 mutein L74F. The 4-1 BBL and IL-21 mutein are hereby understood to at least comprise the indicated substitution or deletion, or to comprise no other amino acid sequence modification than the indicated substitution or deletion. In one embodiment of the conjugate, the 4-1 BBL ECD mutein and the IL-21 mutein are each conjugated to an antigen binding protein, whereby preferably, the 4-1 BBL ECD mutein is present as a hetero- or homotrimer of 4-1 BBL ECDs connected through polypeptide linkers.
In specific embodiments the conjugate comprises a combination of a 4-1 BBL ECD mutein and an IL-21 mutein selected from the group consisting of: 4-1 BBL mutein A154D and IL-21 mutein (N82- A83- G84- R85- R86- Q87- K88-); 4-1 BBL mutein A154D and IL-21 mutein L20W; 4-1 BBL mutein A154D and IL-21 mutein L74D; 4-1 BBL mutein A154D and IL-21 mutein L20N; 4-1 BBL mutein A154D and IL-21 mutein I67N; 4-1 BBL mutein A154D and IL-21 mutein L20S; 4-1 BBL mutein A154D and IL-21 mutein L13E; 4-1 BBL mutein A154D and IL-21 mutein I8H; 4-1 BBL mutein A154D and IL-21 mutein (N63- E64- R65- I66-); 4-1 BBL mutein A154D and IL-21 mutein L74F; 4- 1 BBL mutein A154E and IL-21 mutein (N82- A83- G84- R85- R86- Q87- K88-); 4-1 BBL mutein A154E and IL-21 mutein L20W; 4-1 BBL mutein A154E and IL-21 mutein L74D; 4-1 BBL mutein A154E and IL-21 mutein L20N; 4-1 BBL mutein A154E and IL-21 mutein I67N; 4-1 BBL mutein
A154E and IL-21 mutein L20S; 4-1 BBL mutein A154E and IL-21 mutein L13E; 4-1 BBL mutein A154E and IL-21 mutein I8H; 4-1 BBL mutein A154E and IL-21 mutein (N63- E64- R65- I66-); 4- 1 BBL mutein A154E and IL-21 mutein L74F; 4-1 BBL mutein V153Q and IL-21 mutein (N82- A83- G84- R85- R86- Q87- K88-); 4-1 BBL mutein V153Q and IL-21 mutein L20W; 4-1 BBL mutein V153Q and IL-21 mutein L74D; 4-1 BBL mutein V153Q and IL-21 mutein L20N; 4-1 BBL mutein V153Q and IL-21 mutein I67N; 4-1 BBL mutein V153Q and IL-21 mutein L20S; 4-1 BBL mutein V153Q and IL- 21 mutein L13E; 4-1 BBL mutein V153Q and IL-21 mutein I8H; 4-1 BBL mutein V153Q and IL-21 mutein (N63- E64- R65- I66-); 4-1 BBL mutein V153Q and IL-21 mutein L74F; 4-1 BBL mutein Q227E and IL-21 mutein (N82- A83- G84- R85- R86- Q87- K88-); 4-1 BBL mutein Q227E and IL- 21 mutein L20W; 4-1 BBL mutein Q227E and IL-21 mutein L74D; 4-1 BBL mutein Q227E and IL-21 mutein L20N; 4-1 BBL mutein Q227E and IL-21 mutein I67N; 4-1 BBL mutein Q227E and IL-21 mutein L20S; 4-1 BBL mutein Q227E and IL-21 mutein L13E; 4-1 BBL mutein Q227E and IL-21 mutein I8H; 4-1 BBL mutein Q227E and IL-21 mutein (N63- E64- R65- 166-); 4-1 BBL mutein Q227E and IL-21 mutein L74F; 4-1 BBL mutein Q227R and IL-21 mutein (N82- A83- G84- R85- R86- Q87- K88-); 4-1 BBL mutein Q227R and IL-21 mutein L20W; 4-1 BBL mutein Q227R and IL-21 mutein
L74D; 4-1 BBL mutein Q227R and IL-21 mutein L20N; 4-1 BBL mutein Q227R and IL-21 mutein
I67N; 4-1 BBL mutein Q227R and IL-21 mutein L20S; 4-1 BBL mutein Q227R and IL-21 mutein
L13E; 4-1 BBL mutein Q227R and IL-21 mutein I8H; 4-1 BBL mutein Q227R and IL-21 mutein (N63-
E64- R65- I66-); 4-1 BBL mutein Q227R and IL-21 mutein L74F; 4-1 BBL mutein L101 N and IL-21 mutein (N82- A83- G84- R85- R86- Q87- K88-); 4-1 BBL mutein L101 N and IL-21 mutein L20W; 4- 1 BBL mutein L101 N and IL-21 mutein L74D; 4-1 BBL mutein L101 N and IL-21 mutein L20N; 4-1 BBL mutein L101 N and IL-21 mutein I67N; 4-1 BBL mutein L101 N and IL-21 mutein L20S; 4-1 BBL mutein L101 N and IL-21 mutein L13E; 4-1 BBL mutein L101 N and IL-21 mutein I8H; 4-1 BBL mutein L101 N and IL-21 mutein (N63- E64- R65- I66-); 4-1 BBL mutein L101 N and IL-21 mutein L74F; 4- 1 BBL mutein Y110Q and IL-21 mutein (N82- A83- G84- R85- R86- Q87- K88-); 4-1 BBL mutein
Y110Q and IL-21 mutein L20W; 4-1 BBL mutein Y110Q and IL-21 mutein L74D; 4-1 BBL mutein
Y110Q and IL-21 mutein L20N; 4-1 BBL mutein Y110Q and IL-21 mutein I67N; 4-1 BBL mutein
Y110Q and IL-21 mutein L20S; 4-1 BBL mutein Y110Q and IL-21 mutein L13E; 4-1 BBL mutein
Y110Q and IL-21 mutein I8H; 4-1 BBL mutein Y110Q and IL-21 mutein (N63- E64- R65- I66-); 4- 1 BBL mutein Y1 10Q and IL-21 mutein L74F; 4-1 BBL mutein Q230K and IL-21 mutein (N82- A83- G84- R85- R86- Q87- K88-); 4-1 BBL mutein Q230K and IL-21 mutein L20W; 4-1 BBL mutein Q230K and IL-21 mutein L74D; 4-1 BBL mutein Q230K and IL-21 mutein L20N; 4-1 BBL mutein Q230K and IL-21 mutein I67N; 4-1 BBL mutein Q230K and IL-21 mutein L20S; 4-1 BBL mutein Q230K and IL- 21 mutein L13E; 4-1 BBL mutein Q230K and IL-21 mutein I8H; 4-1 BBL mutein Q230K and IL-21 mutein (N63- E64- R65- I66-); 4-1 BBL mutein Q230K and IL-21 mutein L74F; 4-1 BBL mutein V100Q and IL-21 mutein (N82- A83- G84- R85- R86- Q87- K88-); 4-1 BBL mutein V100Q and IL- 21 mutein L20W; 4-1 BBL mutein V100Q and IL-21 mutein L74D; 4-1 BBL mutein V100Q and IL-21 mutein L20N; 4-1 BBL mutein V100Q and IL-21 mutein I67N; 4-1 BBL mutein V100Q and IL-21 mutein L20S; 4-1 BBL mutein V100Q and IL-21 mutein L13E; 4-1 BBL mutein V100Q and IL-21
mutein I8H; 4-1 BBL mutein V100Q and IL-21 mutein (N63- E64- R65- I66-); and, 4-1 BBL mutein V100Q and IL-21 mutein L74F.
In one embodiment, a conjugate comprising a combination of a 4-1 BBL ECD mutein and an IL-21 mutein, is a conjugate, which when consisting of trastuzumab to which the IL-21 mutein and the 4-1 BBL ECD mutein are conjugated, whereby the 4-1 BBL ECD mutein is present as a homotrimer wherein the ECD monomers are connected through (GGGGS)4-linkers, induces a maximal proliferation of NK cells at a saturating concentration of 25 nM of the conjugate in a normalized 5-day NK cell proliferation assay in the presence of SKOV3 tumor cells, which proliferation is at least 60% of the proliferation induced by a corresponding control conjugate comprising wild-type IL-21 and wild type 4-1 BBL in the same assay. Hence, in one embodiment, the conjugate comprises a combination of a 4-1 BBL ECD mutein and an IL-21 mutein selected from the group consisting of: 4-1 BBL mutein A154D and IL-21 mutein (N82- A83- G84- R85- R86- Q87- K88-); 4-1 BBL mutein A154D and IL-21 mutein L20W; 4-1 BBL mutein A154D and IL-21 mutein L20S; 4-1 BBL mutein A154E and IL-21 mutein (N82- A83- G84- R85- R86- Q87- K88-); 4-1 BBL mutein A154E and IL-21 mutein L20W; and 4-1 BBL mutein A154E and IL-21 mutein L20S.
In one embodiment, a conjugate comprising a combination of a 4-1 BBL ECD mutein and an IL-21 mutein, is a conjugate, which when consisting of trastuzumab to which the IL-21 mutein and the 4-1 BBL ECD mutein are conjugated, whereby the 4-1 BBL ECD mutein is present as a homotrimer wherein the ECD monomers are connected through (GGGGS)4-linkers, induces a maximal proliferation of NK cells at a saturating concentration of 25 nM of the conjugate in a normalized 5-day NK cell proliferation assay in the presence of SKOV3 tumor cells, which proliferation is at least 89% of the proliferation induced by a corresponding control conjugate comprising wild-type IL-21 and wild type 4-1 BBL in the same assay. Hence, in one embodiment, the conjugate comprises a combination of a 4-1 BBL ECD mutein and an IL-21 mutein selected from the group consisting of: 4-1 BBL mutein A154D and IL-21 mutein (N82- A83- G84- R85- R86- Q87- K88-); 4-1 BBL mutein A154D and IL-21 mutein L20W; 4-1 BBL mutein A154E and IL-21 mutein (N82- A83- G84- R85- R86- Q87- K88-); and 4-1 BBL mutein A154E and IL-21 mutein L20W.
In one embodiment, a conjugate comprising a combination of a 4-1 BBL ECD mutein and an IL-21 mutein, is a conjugate, which when consisting of trastuzumab to which the IL-21 mutein and the 4-1 BBL ECD mutein are conjugated, whereby the 4-1 BBL ECD mutein is present as a homotrimer wherein the ECD monomers are connected through (GGGGS)4-linkers, induces a maximal proliferation of NK cells at a saturating concentration of 25 nM of the conjugate in a normalized 5-day NK cell proliferation assay in the presence of SKOV3 tumor cells, which proliferation is at least 105% of the proliferation induced by a corresponding control conjugate comprising wild-type IL-21 and wild type 4-1 BBL in the same assay. Hence, in one embodiment, the conjugate comprises a combination of: 4-1 BBL mutein A154D and IL-21 mutein (N82- A83- G84- R85- R86- Q87- K88-).
In one embodiment, a conjugate as described herein comprises an IL-21 R agonist that is an antigen-binding region that specifically binds IL-21 R and that has IL-21 R agonist activity. The antigen-binding region can be an antigen-binding region as described herein above.
In one embodiment, a conjugate as described herein comprises more than one IL-21 R agonist as described above. Thus, in one embodiment, the conjugate has an IL-21 R agonistvalency that is higher than one. The IL-21 R agonist-valency of a conjugate can for example be 2, 3, 4, 5, 6, 7, 8, 9, 10, 11 , 12, 13, 14, 15 or more.
Structure of a conjugate comprising a 4-1 BBL ECD mutein and an antigen binding protein
In one embodiment, in a conjugate comprising a 4-1 BBL ECD mutein and an antigen binding protein as described herein, the at least one of the first and second antigen-binding regions (that specifically bind a TAA, or an NK cell activating receptor) is conjugated to the third antigen-binding region that has or can have affinity for a surface antigen expressed on NK cells. Preferably, the at least one of the first and second antigen-binding regions that specifically binds a TAA, or an NK cell activating receptor is conjugated to at least one polypeptide chain of the third antigen-binding region. The conjugation of the two domains/regions is understood to mean that they are covalently linked to each other. The two domains/regions can be chemically cross-linked to each other, using a cross-linker for linking two proteinaceous molecules, as are well-known in the art. There are a number of commercially available crosslinking reagents for preparing protein or peptide bioconjugates. Many of these crosslinkers allow dimeric homo- or heteroconjugation of biological molecules through free amine or sulfhydryl groups in protein side chains. Other crosslinking methods involve coupling through carbohydrate groups with hydrazide moieties. For cross-linking the first and/or second binding regions to the third binding region it is preferred that cross-linkers with heterofunctional specificity are used. In one embodiment, the cross-linker comprises a flexible spacer, to provide flexibility or freedom of motion of the two regions with respect to each other.
In one embodiment, however, the at least one of the first and second antigen-binding regions is conjugated to the third antigen-binding region by being comprised in a single polypeptide chain. As an antigen-binding region can comprise two polypeptide chains, such as a VH and a VL chain, in one embodiment, at least one polypeptide chain in an antigen-binding region that specifically binds a TAA, or an NK cell activating receptor forms a single polypeptide chain with at least one polypeptide chain of the second antigen-binding region. Likewise, as also the third antigen-binding region that has or can have affinity for a surface antigen expressed on NK cells can comprise two polypeptide chains, such as a dimeric Fc region of an antibody, in one embodiment, at least one polypeptide chain of the third antigen-binding region forms a single polypeptide chain with the at least one polypeptide chain in at least one of the first and second antigen-binding region.
Thus, in one embodiment, a conjugate comprising a 4-1 BBL ECD mutein and an antigen binding protein as described herein comprises a single polypeptide chain that comprises in an N- to C-terminal order: i) at least one polypeptide chain in the at least one of the first and second antigen-binding region; ii) optionally a flexible linker; and iii) (at least one polypeptide chain of) the third antigen-binding region. The flexible linker can be an immunoglobulin hinge region or can be linker as described herein below.
In one embodiment, the third antigen-binding region, i.e. the domain that has or can have affinity for a surface antigen expressed on NK cells, is a dimeric immunoglobulin Fc region, wherein
each of the two polypeptide chains of the Fc region is linked to a CH1 domain, each of which CH1 domains is linked to an immunoglobulin variable region of the at least one of the first and second antigen-binding region (that specifically binds a TAA, or an NK cell activating receptor). The dimeric immunoglobulin Fc region preferably is a dimer of an Fc region as herein described above. The immunoglobulin variable region can be an scFv, a VH domain, a VL domain, or an immunoglobulin single variable domain (ISVD) such as a dAb, a V-NAR domain or a VHH domain. In one embodiment, the immunoglobulin variable region that is linked to the CH1 domain is a VH domain that is paired with a VL domain linked to a CK or CA domain. In this embodiment, preferably, the VH and VL domains together specifically bind the TAA or the NK cell activating receptor.
In one embodiment, the two immunoglobulin variable regions bind the same TAA. In another embodiment, the two immunoglobulin variable regions each bind a different TAA. In one embodiment, the first immunoglobulin variable region binds a TAA and the second immunoglobulin variable region binds an NK cell activating receptor. In one embodiment, the first and the second immunoglobulin variable regions both bind an NK cell activating receptor. The two immunoglobulin variable regions can each bind a different NK cell activating receptor or they can both bind the same NK cell activating receptor.
With respect to its specificity, a conjugate comprising a 4-1 BBL ECD mutein and an antigen binding protein as described herein can thus be homodimeric, with two identical immunoglobulin variable regions that both bind the same TAA. Alternatively, a conjugate comprising a 4-1 BBL ECD mutein and an antigen binding protein as described herein can thus be heterodimeric with respect to the specificity for TAAs and/or NK cell activating receptor , wherein each of the two immunoglobulin variable regions each bind a different TAA, or a TAA and an NK cell activating receptor. In embodiments, wherein the antigen binding protein is bispecific, it is preferred that one of the two immunoglobulin variable regions is an immunoglobulin single variable domain, while the other immunoglobulin variable region is not. Next, the assembly of heterodimeric antibody heavy chains can be accomplished by expressing two different antibody heavy chain sequences in the same cell, which may lead the assembly of homodimers of each antibody heavy chain as well as assembly of heterodimers. Promoting the preferential assembly of heterodimers can be accomplished by incorporating different mutations in the CH3 domain of each antibody heavy chain constant region as shown in US13/494,870, US16/028850, US11/533,709, US12/875,015, US13/289,934, US14/773,418, US12/81 1 ,207, US13/866,756, US14/647,480, US 14/830,336 and WO2019/195409. For example, mutations can be made in the CH3 domain based on human Ig G 1 and incorporating distinct pairs of amino acid substitutions within a first polypeptide and a second polypeptide that allow these two chains to selectively heterodimerize with each other. For example, CH3 domains which comprise amino acid substitutions, wherein the CH3 domain interface of the antibody Fc region is mutated to create altered charge polarity across the Fc dimer interface such that co-expression of electrostatically matched Fc chains supports favorable attractive interactions thereby promoting desired Fc heterodimer formation, whereas unfavorable repulsive charge interactions suppress unwanted Fc homodimer formation.
In one embodiment, a “knob-into-holes” approach is used in which the CH3 domain interface of the antibody Fc region is mutated so that the antibodies preferentially form heterodimers (further including the attached light chains). These mutations create altered charge polarity across the Fc dimer interface such that coexpression of electrostatically matched Fc chains support favorable attractive interactions thereby promoting desired Fc heterodimer formation, whereas unfavorable repulsive charge interactions suppress unwanted Fc homodimer formation. For example, one heavy chain comprises a T366W substitution and the second heavy chain comprises a T366S, L368A and Y407V substitution, see, e.g. Ridgway et al (1996) Protein Eng., 9, pp. 617-621 ; Atwell (1997) J. Mol. Biol., 270, pp. 26-35; and W02009/089004, the disclosures of which are incorporated herein by reference. In another approach, one heavy chain comprises a F405L substitution, and the second heavy chain comprises a K409R substitution, see, e.g., Labrijn et al. (2013) Proc. Natl. Acad. Sci. U.S.A., 110, pp. 5145-5150. In another approach, one heavy chain comprises T350V, L351Y, F405A, and Y407V substitutions and the second heavy chain comprises T350V, T366S, K392L, and T394W substitutions, see, e.g. Von Kreudenstein et al., (2013) mAbs 5:646-654. In another approach, one heavy chain comprises both K409D and K392D substitutions and the second heavy chain comprises both D399K and E356K substitutions, see, e.g. Gunasekaran et al., (2010) J. Biol. Chem. 285:19637-19646. In another approach, one heavy chain comprises D221 E, P228E and L368E substitutions and the second heavy chain comprises D221 R, P228R, and K409R substitutions, see, e.g. Strop et al., (2012) J. Mol. Biol. 420: 204-219. In another approach, one heavy chain comprises S364H and F405A substitutions and the second heavy chain comprises Y349Tand, T394F substitutions, see, e.g. Moore et al., (2011) mAbs 3: 546-557. In another approach, one heavy chain comprises a H435R substitution, and the second heavy chain optionally may or may not comprise a substitution, see, e.g. US Patent no. 8,586,713. When such heteromultimeric antibodies have Fc regions derived from a human lgG2 or lgG4, the Fc regions of these antibodies can be engineered to contain amino acid modifications that permit CD16 binding or that avoid CD16 binding. In some embodiments, the antibody may comprise mammalian antibody-type N-linked glycosylation at residue N297 (Kabat EU numbering).
In one preferred embodiment, a conjugate comprising a 4-1 BBL ECD mutein and an antigen binding protein as described herein comprises a dimeric immunoglobulin Fc region that is a (homo or hetero) dimer of at least one Fc region as herein described above, wherein each of the two Fc polypeptide chains is operably linked to a Fab that specifically binds a TAA, or an NK cell activating receptor. Apart from the presence of the 4-1 BBL ECD mutein (and optional further agonists), the antigen binding protein in a conjugate comprising such a dimeric Fc linked to two Fabs can thus form an immunoglobulin structure, such as a conventional IgG immunoglobulin.
In one embodiment, in a conjugate comprising a 4-1 BBL ECD mutein and an antigen binding protein as described herein, at least one of the 4-1 BBL ECD mutein and the further agonists , is conjugated to the at least one of the first and second antigen-binding region that specifically binds a TAA, or an NK cell activating receptor, or to the third antigen-binding region. As indicated above conjugation of two proteinaceous entities is understood to mean that they are covalently linked to each other, which can be done by chemical cross-linking, using cross-linkers for linking two
proteinaceous molecules, as are well-known in the art, which cross-linker can comprise a flexible spacer.
In one embodiment, however, the at least one of the 4-1 BBL ECD mutein and the further agonist forms a single polypeptide chain with at least one of: i) at least one polypeptide chain in the at least one of the first and a second antigen-binding regions that specifically binds a TAA, or NK cell-activating receptor; and, ii) (at least one polypeptide chain in) the second antigen-binding region that has or can have affinity for a surface antigen expressed on NK cells. In one embodiment, a flexible linker (as described below) is present between the agonist and the region defined in i) or ii).
In one embodiment, the at least one of the 4-1 BBL ECD mutein and the further agonist forms a single polypeptide chain with at least one of: i) a light chain in at least one of the two Fabs that specifically bind a TAA, or an NK cell activating receptor; and, ii) at least one of the two Fc chains in the dimeric immunoglobulin Fc region. In one embodiment, a flexible linker (as described below) is present between the at least one of the 4-1 BBL ECD mutein and the further agonist and the light chain defined in i) or the Fc chain defined in ii).
In one embodiment, the at least one of the 4-1 BBL ECD mutein and the further agonist is fused to at least one of: i) the N-terminus of the light chain in at least one of the two Fabs that specifically bind a TAA, or an NK cell activating receptor, optionally through a flexible linker; ii) the C-terminus of the light chain in at least one of the two Fabs that specifically bind a TAA, or an NK cell activating receptor, optionally through a flexible linker; iii) the N-terminus of the heavy chain in at least one of the two Fabs that specifically bind a TAA, or an NK cell activating receptor; and, iv) the C-terminus ofthe heavy chain in at least one of the two Fc chains in the dimeric immunoglobulin Fc region, optionally through a flexible linker, whereby the flexible linker can be as described below.
In one embodiment, wherein the conjugate comprises a (homo- or hetero) dimeric antigen binding protein as described above, the dimer can comprise at least one of the 4-1 BBL ECD mutein and the further agonist on only one of the two monomers in the dimer, or the dimer can comprise at least one of the 4-1 BBL ECD mutein and the further agonist on each (i.e. both) of the two monomers in the dimer. Thus, in one embodiment, wherein the conjugate comprises an immunoglobulin structure, at least one of the 4-1 BBL ECD mutein and the further agonist can be present on at least one or on both sides of the immunoglobulin structure. In embodiments wherein at least one of the 4-1 BBL ECD mutein and the further agonist is present on each of the two monomers in the dimer or immunoglobulin structure, the antigen binding protein in the conjugate can for example comprises a 4-1 BBL ECD mutein on both monomers, a further agonist (e.g. an IL- 21 R agonist) on both monomers or, a 4-1 BBL ECD mutein on a first monomer and a further agonist (e.g. an IL-21 R agonist) on a second monomer. It is understood that when the antigen binding protein in the conjugate comprises heterodimeric heavy chains, the "knob-into-hole" technology as described above can be applied, wherein the CH3 domain of the first chain is modified to have a "protuberance" ("knob") and the second chain is modified to have a corresponding "cavity" ("hole").
Thus, in one embodiment, a conjugate comprising antigen binding protein as described herein is heterodimeric with respect to at least one of: i) the first and second antigen-binding regions; and ii) at least one of the fused 4-1 BBL ECD mutein and the fused further agonist, and the dimeric
Fc region comprises different first and a second polypeptide chains comprising knob-into-hole modifications promoting association of the first and the second polypeptide chains of the Fc region.
Amino acid sequences of suitable peptidyl linkers for linking the various functional domains and regions in a conjugate comprising a 4-1 BBL ECD mutein and an antigen binding protein as described herein are known in the art as described herein above.
In one embodiment, a conjugate comprising a 4-1 BBL ECD mutein and an antigen binding protein as described herein is a conjugate as exemplified herein, such as e.g. AVC323, AVC421 , AVC245 or AVC267 (see Table 1 .1 .10.2) or a derivative of AVC72 - AVC107, AVC176, AVC187 - AVC190, AVC285 or AVC287, wherein the trastuzumab variable heavy (VH) and variable light (VL) domains are replaced by variable heavy (VH) and variable light (VL) domains from a monoclonal antibody against TROP2, such as sacituzumab, datopotamab, AR46A6, KM4097 or K5-70, as described above.
In one embodiment, the the conjugate comprises a TROP2 targeting antigen-binding protein comprising: a) a first heavy chain comprising an amino acid sequence with at least 95, 96, 97, 98, 99 or 100% sequence identity to any one of SEQ ID NO.’s: 585, 591 and 588; b) a second heavy chain comprising an amino acid sequence with at least 95, 96, 97, 98, 99 or 100% sequence identity to any one of SEQ ID NO.’s: 586, 674, 592 and 589; and c) a light chain comprising an amino acid sequence with at least 95, 96, 97, 98, 99 or 100% sequence identity to any one of SEQ ID NO.’s: 584, 593 and 590.
In a preferred embodiment, the conjugate comprises: a) a first heavy chain comprising an amino acid sequence with at least 95, 96, 97, 98, 99 or 100% sequence identity to SEQ ID NO: 585; b) a second heavy chain comprising an amino acid sequence with at least 95, 96, 97, 98, 99 or 100% sequence identity to SEQ ID NO.’s: 586 or 674; and c) a light chain comprising an amino acid sequence with at least 95, 96, 97, 98, 99 or 100% sequence identity to SEQ ID NO: 584. In a more preferred embodiment, the conjugate comprises: a) a first heavy chain comprising an amino acid sequence with at least 95, 96, 97, 98, 99 or 100% sequence identity to SEQ ID NO: 585; b) a second heavy chain comprising an amino acid sequence with at least 95, 96, 97, 98, 99 or 100% sequence identity to SEQ ID NO.’s: 586; and c) a light chain comprising an amino acid sequence with at least 95, 96, 97, 98, 99 or 100% sequence identity to SEQ ID NO: 584.
Biological activities of conjugates comprising a 4-1 BBL ECD mutein and an antigen binding protein
A conjugate comprising a 4-1 BBL ECD mutein or an antigen binding protein as described herein can have a one or more biological activities, including e.g. antigen (TAA, preferably TROP2) binding, binding to an NK cell, the ability to direct an NK cell to a target cell expressing the TAA, activating an NK cell, including inducing hyper-functionality of the NK cell, and/or the ability to elicit lysis of target cell by the (activated/hyper-functional) NK cell.
In one embodiment, a conjugate comprising a 4-1 BBL ECD mutein or an antigen binding protein as described herein causes an increase in at least one NK cell activity selected from CD107a degranulation, CD69 expression, IFNy production, NK cell proliferation and NK cell cytotoxicity, whereby preferably, the increase is at least a factor 1 .0, 1 .1 , 1 .2, 1 .5, 2.0, 5.0, 10, 20 50 100, 110,
120, 150, 200, 210, 220, 250 or 300 higher as compared to the increase achieved with the same effector : target cell ratio, with the same NK cells and target cells that are not brought into contact with the conjugate comprising a 4-1 BBL ECD mutein or the antigen binding protein.
In one embodiment, a conjugate comprising a 4-1 BBL ECD mutein or an antigen binding protein as described herein cause an increase in at least one NK cell activity selected from CD107a degranulation, CD69 expression, IFNy production, NK cell proliferation and NK cell cytotoxicity, whereby preferably, the increase is at least a factor 1 .0, 1 .1 , 1 .2, 1 .5, 2.0, 5.0, 10, 20, 50, 100, 110, 120, 150, 200, 210, 220, 250 or 300 higher as compared to the increase achieved with the same effector : target cell ratio, with the same NK cells and target cells that are brought into contact (under otherwise identical conditions) with a reference antigen binding protein.
In one embodiment, the reference antigen binding protein is a conventional human lgG1 monoclonal antibody that binds to the same TAA, preferably, that binds to the same epitope, more preferably that has same TAA-specific antigen-binding region(s) as the conjugate comprising a 4- 1 BBL ECD mutein and an antigen binding protein. For example, compared to the monoclonal antibody sacituzumab, a conjugate comprising a 4-1 BBL ECD mutein and an antigen binding protein having a TROP2-binding region (preferably having the sacituzumab variable domains), is superior in causing an increase in NK cell activities.
In one embodiment, the reference antigen binding protein is a (multispecific) antigen binding protein comprising at least one antigen-binding region that binds to the same TAA, preferably, that binds to the same epitope, more preferably that has same TAA-specific antigen-binding region(s) as the conjugate comprising a 4-1 BBL ECD mutein or the antigen binding protein, and comprising at least one antigen-binding region that specifically binds an NK cell activating receptor such as NKp46, NKp44, NKp30, NKG2D, DNAM1 and CD16A. In one embodiment, the reference antigen binding protein is a (multispecific) antigen binding protein comprising at least one antigen-binding region that binds to the same TAA, preferably, that binds to the same epitope, more preferably that has same TAA-specific antigen-binding region(s) as the conjugate comprising a 4-1 BBL ECD mutein or the antigen binding protein, and comprising at least one NK cell-activating cytokine other than a 4-1 BBL ECD mutein. The NK cell-activating cytokine other than a 4-1 BBL ECD mutein can be an NK cell activating cytokine is selected from the group consisting of an IL-21 R agonist, an IL- 15 receptor agonist, a type I interferon (IFN-1) agonist, an IL-2 receptor agonist, an IL-12 receptor agonist and an IL-18 receptor agonist, as described above. For example, an IL21 mutein as described above, or an IL-15 receptor agonist, such as IL15, a human modified IL-15 cross-linker as described in US2018282386 and Vallera et al. (2016, Clin Cancer Res.; 22(14): 3440-3450).
In one embodiment, the reference antigen binding protein is an NK cell engager, such as e.g. described in WO2016/207278, WO 2018/148445, WO2018/152518, WO2019195409 US2018282386, Vallera et al. (2016, supra) and Demaria et al. (2021 , supra). One example of a (multispecific) reference antigen binding protein is for example AVC-006 as described in WO2024/056862, comprising one HER2-binding region and one NKG2D-binding region.
Assays which detect the expression of an NK activation marker or which detects NK cell cytotoxicity, or for detecting NK cell activation and cytotoxicity assays (e.g. short and long term
cytotoxicity assays) are described in the Examples herein, as well as for example, in Pessino et al, J. Exp. Med, 1998, 188 (5): 953-960; Sivori et al, Eur J Immunol, 1999. 29:1656-1666; Brando et al, (2005) J. Leukoc. Biol. 78:359-371 ; El-Sherbiny et al, (2007) Cancer Research 67(18):8444-9; Nolte-'t Hoen et al, (2007) Blood 109:670-673); WO 2016/207278 and WO 2018/148445.
In one embodiment, a conjugate comprising a 4-1 BBL ECD mutein or an antigen binding protein as described herein has the ability to induce hyper-functionality (or a hyper-functional phenotype) in an NK cell or in a population of NK cells. A hyper-functional NK cell phenotype is herein understood as a phenotype that has one or more of the features of the phenotype that is obtained by expanding NK cells obtained from donors ex vivo by co-culturing them with irradiated K562 feeder cells modified to express membrane bound IL-21 (mblL-21) and 4-1 BB ligand (FC21 feeder cells) as described by Denman et al. (2012, supra). Thus, in one embodiment, ex vivo expansion of donor NK cells by co-culturing (e.g. for 7, 14 or 21 days), with a conjugate comprising a 4-1 BBL ECD mutein or an antigen binding protein as described herein, produces a population of NK cells having one or more (or preferably all) of the features selected from the group: a) the fold expansion of the expanded NK cells is at least 0.5, 1 .0, 2.0 or 5.0 fold of the fold expansion of expanded NK cells obtained by ex vivo expansion by co-culturing with irradiated FC21 feeder cells; b) the telomere length of the expanded NK cells is increased by at least 10, 15, 20, 25, 30, 35, 40, 45, 50 or 55% as compared to the telomere length of fresh NK cells, preferably, the percentage telomere length increase of the expanded NK cells as compared to the telomere length of fresh NK cells, is at least 0.5, 1 .0, 2.0 or 5.0 fold of the percentage telomere length increase of expanded NK cells obtained by ex vivo expansion by co-culturing with irradiated FC21 feeder cells; c) the expression level of at least one NK cell activating receptor selected from NKG2D, NKp30, NKp44, NKp46 and CD16 on the expanded NK cells is at least 0.5, 1.0, 2.0 or 5.0 fold of the expression level on NK cells obtained upon ex vivo expansion in the presence of FC21 feeder cells; d) the secretion of at least one cytokine of TNF-a, IFN-y and IL-6 by the expanded NK cells is at least 0.5, 1.0, 2.0 or 5.0 fold of the secretion of the cytokine by NK cells obtained upon ex vivo expansion in the presence of FC21 feeder cells; and, e) the cytotoxicity of the expanded NK cells is at least 0.5, 1 .0, 2.0 or 5.0 fold of the cytotoxicity of NK cells obtained upon ex vivo expansion in the presence of FC21 feeder cells. In a preferred embodiment, the ex vivo expansion of donor NK cells further comprises that the NK cells are co-cultured with tumor cells expressing a TAA specifically bound by the conjugate comprising a 4-1 BBL ECD mutein or the antigen binding protein. Protocols for ex vivo expansion of donor NK cells and assays for determining fold expansion, telomere length increase, expression level of NK cell activating receptors, cytokine secretion and cytotoxicity (e.g. short term or long term cytotoxicity assays) are described in Denman et al. (2012, supra) and in the Examples herein.
Pharmaceutical compositions
In a further aspect, the invention relates to a pharmaceutical composition comprising a 4- 1 BBL ECD mutein as described herein or a conjugate comprising a 4-1 BBL ECD mutein and an antigen binding protein as described herein, and a pharmaceutically acceptable carrier (excipient).
The pharmaceutically acceptable carrier such as an adjuvant, or vehicle, is for administration of the protein to a subject. Said pharmaceutical composition can be used in the methods of treatment described herein below by administration of an effective amount of the composition to a subject in need thereof. The term "subject", as used herein, refers to all animals classified as mammals and includes, but is not restricted to, primates and humans. The subject is preferably a male or female human of any age or race.
The term "pharmaceutically acceptable carrier", as used herein, is intended to include any and all solvents, dispersion media, coatings, antibacterial and antifungal agents, isotonic and absorption delaying agents, and the like, compatible with pharmaceutical administration (see e.g. “Handbook of Pharmaceutical Excipients”, Rowe et al eds. 7th edition, 2012, www.pharmpress.com). The use of such media and agents for pharmaceutically active substances is well known in the art. Except insofar as any conventional media or agent is incompatible with the active compound, use thereof in the compositions is contemplated. Acceptable carriers, excipients, or stabilizers are nontoxic to recipients at the dosages and concentrations employed, and include buffers such as phosphate, citrate, and other organic acids; antioxidants including ascorbic acid and methionine; preservatives (such as octadecyldimethylbenzyl ammonium chloride; hexamethonium chloride; benzalkonium chloride, benzethonium chloride; phenol, butyl or benzyl alcohol; alkyl parabens such as methyl or propyl paraben; catechol; resorcinol; cyclohexanol; 3- pentanol; and m-cresol); low molecular weight (less than about 10 residues) proteins; proteins, such as serum albumin, gelatin, or immunoglobulins; hydrophilic polymers such as polyvinylpyrrolidone; amino acids such as glycine, glutamine, asparagine, histidine, arginine, or lysine; monosaccharides, disaccharides, and other carbohydrates including glucose, mannose, or dextrins; chelating agents such as EDTA; sugars such as sucrose, mannitol, trehalose or sorbitol; salt-forming counter ions such as sodium; metal complexes (e.g. Zn2+ protein complexes); and/or non-ionic surfactants such as TWEEN™, PLURONICS™ or polyethylene glycol (PEG).
Supplementary active compounds can also be incorporated into the pharmaceutical composition of the invention. Thus, in a particular embodiment, the pharmaceutical composition of the invention may also contain more than one active compound as necessary for the particular indication being treated, preferably those with complementary activities that do not adversely affect each other. For example, it may be desirable to further provide a chemotherapeutic agent, a cytokine, an analgesic agent, a thrombolytic or an immunomodulating agent, e.g. an immunosuppressive agent or an immunostimulating agent. The effective amount of such other active agents depends, among other things, on the amount of the protein of the invention present in the pharmaceutical composition, the type of disease or disorder or treatment, etc.
In one embodiment, the protein of the invention is prepared with carriers that will protect said compound against rapid elimination from the body, such as a controlled release formulation, including implants and microencapsulated delivery systems, e.g. liposomes. Biodegradable, biocompatible polymers can be used, such as ethylene vinyl acetate, polyanhydrides, polyglycolic acid, collagen, polyorthoesters, and polylactic acid. Methods for preparation of such formulations will be apparent to those skilled in the art. Liposomal suspensions, including targeted liposomes
can also be used as pharmaceutically acceptable carriers. These can be prepared according to methods known to those skilled in the art, for example, as described in US 4,522,811 or WO2010/095940.
The administration route of the protein of the invention can be parenteral. The term "parenteral" as used herein includes intravenous, intra-arterial, intralymphatic, intraperitoneal, intramuscular or subcutaneous. The intravenous or intramuscular forms of parenteral administration are preferred. By "systemic administration" is meant intravenous, intraperitoneal and intramuscular administration. The amount of the protein required for therapeutic or prophylactic effect will, of course, vary with the protein chosen, the nature and severity of the condition being treated and the patient. In addition, the protein may suitably be administered by pulse infusion, e.g., with declining doses of the protein. Preferably the dosing is given by injections, most preferably intravenous, intramuscular or subcutaneous injections, depending in part on whether the administration is brief or chronic.
Thus, in a particular embodiment, the pharmaceutical composition of the invention may be in a form suitable for parenteral administration, such as sterile solutions, suspensions or lyophilized products in the appropriate unit dosage form. Pharmaceutical compositions suitable for injectable use include sterile aqueous solutions (where water soluble) or dispersions and sterile powders for the extemporaneous preparation of sterile injectable solutions or dispersions. For intravenous administration, suitable carriers include physiological saline, bacteriostatic water, CremophorEM (BASF, Parsippany, N.J.) or phosphate buffered saline (PBS). In all cases, the composition must be sterile and should be fluid to the extent that easy syringability exists. It must be stable under the conditions of manufacture and storage and must be preserved against the contaminating action of microorganisms such as bacteria and fungi. The carrier can be a solvent or dispersion medium containing, for example, water, ethanol, a pharmaceutically acceptable polyol like glycerol, propylene glycol, liquid polyethylene glycol, and suitable mixtures thereof. The proper fluidity can be maintained, for example, by the use of a coating such as lecithin, by the maintenance of the required particle size in the case of dispersion and by the use of surfactants. Prevention of the action of microorganisms can be achieved by various antibacterial and antifungal agents, for example, parabens, chlorobutanol, phenol, ascorbic acid, thimerosal, and the like. In many cases, it will be preferable to include isotonic agents, for example, sugars, polyalcohols such as mannitol, sorbitol or sodium chloride in the composition.
Prolonged absorption of the injectable compositions can be brought about by including in the composition an agent which delays absorption, for example, aluminium monostearate and gelatin.
Sterile injectable solutions can be prepared by incorporating the active compound (e.g a protein of the invention) in the required amount in an appropriate solvent with one or a combination of ingredients enumerated above, as required, followed by filtered sterilization. Generally, dispersions are prepared by incorporating the active compound into a sterile vehicle which contains a basic dispersion medium and the required other ingredients from those enumerated above. In the case of sterile powders for the preparation of sterile injectable solutions, the preferred methods of
preparation are vacuum drying and freeze-drying which yields a powder of the active ingredient plus any additional desired ingredient from a previously sterile-filtered solution thereof.
In a particular embodiment, said pharmaceutical composition is administered via intravenous (IV), intramuscular (IM) or subcutaneous (SC) route. Adequate excipients can be used, such as bulking agents, buffering agents or surfactants. The mentioned formulations will be prepared using standard methods for preparing parenterally administrable compositions as are well known in the art and described in more detail in various sources, including, for example, “Remington: The Science and Practice of Pharmacy” (Ed. Allen, L. V. 22nd edition, 2012, www.pharmpress.com).
It is especially advantageous to formulate the pharmaceutical compositions, namely parenteral compositions, in dosage unit form for ease administration and uniformity of dosage. Dosage unit form as used herein refers to physically discrete units suited as unitary dosages for the subject to be treated; each unit containing a predetermined quantity of active compound (protein of the invention) calculated to produce the desired therapeutic effect in association with the required pharmaceutical carrier. The specification for the dosage unit forms of the invention is dictated by and directly dependent on the unique characteristics of the active compound and the particular therapeutic effect to be achieved, and the limitations inherent in the art of compounding such an active compound for the treatment of individuals.
Generally, for the prevention and/or treatment of the diseases and disorders mentioned herein and depending on the specific disease or condition to be treated and its severity, the potency of the specific protein of the invention to be used, the specific route of administration and the specific pharmaceutical formulation or composition used, the protein of the invention will generally be administered in the range of from 0.001 to 1 ,000 mg/kg body weight/day, preferably about 0.01 to about 100 mg/kg body weight/day, most preferably from about 0.05 to 10 mg/kg body weight/day, such as about 1 , 10, 100 or 1000 microgram per kg body weight per day, either continuously (e.g. by infusion), as a single daily dose or as multiple divided doses during the day. The clinician will generally be able to determine a suitable daily dose, depending on the factors mentioned herein. It will also be clear that in specific cases, the clinician may choose to deviate from these amounts, for example on the basis of the factors cited above and his expert judgment. The pharmaceutical compositions can be included in a container, pack, or dispenser together with instructions for administration.
Therapeutic use
In another aspect there is provided a 4-1 BBL ECD mutein as described herein or a conjugate comprising a 4-1 BBL ECD mutein and an antigen binding protein as described herein for use as a medicament. In one embodiment, the 4-1 BBL ECD mutein as described herein or the conjugate as described herein is used as an active ingredient, component or substance in a medicament.
In one aspect, the invention pertains to a use of a 4-1 BBL ECD mutein as described herein or a conjugate comprising a 4-1 BBL ECD mutein and an antigen binding protein as described herein for the manufacture of a medicament, e.g. a pharmaceutical preparation comprising the 4-1 BBL
ECD mutein, the fusion protein or the conjugate as an active ingredient, for the treatment, prevention or diagnosis of a disease in a subject in need thereof.
In one aspect, the invention pertains to a 4-1 BBL ECD mutein as described herein or a conjugate comprising a 4-1 BBL ECD mutein and an antigen binding protein as described herein, or a pharmaceutical preparation comprising the 4-1 BBL ECD mutein, the fusion protein or the conjugate as an active ingredient, for use in the treatment, prevention or diagnosis of a disease in a subject in need thereof.
In one aspect, the invention pertains to a method for the treatment of a disease in a subject in need thereof, wherein the method comprises the step of administering to the subject (an effective amount of) a 4-1 BBL ECD mutein as described herein or a conjugate comprising a 4-1 BBL ECD mutein and an antigen binding protein as described herein, or a pharmaceutical preparation comprising the 4-1 BBL ECD mutein, the fusion protein or the conjugate as an active ingredient.
The disease to be treated, prevented or diagnosed using the 4-1 BBL ECD mutein, the fusion protein or the conjugate can be a cancer, an infectious disease, an inflammatory disease or an autoimmune disease.
In one embodiment, the disease to be treated, prevented or diagnosed using the 4-1 BBL ECD mutein, the fusion protein or the conjugate is a cancer, e.g. a cancer as described below. The cancer preferably is a cancer expressing a TAA as described herein above, more preferably the cancer is expressing a TAA that is bound by the antigen binding protein in the conjugate. In a preferred embodiment, the TAA is TROP2.
In one embodiment, the treatment can comprise the steps of a) identifying a TAA expressed by (tumor) cells in the cancer; b) selection of conjugate comprising an antigen binding protein as described herein that specifically binds the TAA; c) using the conjugate selected in b) in the treatment of the cancer. The cancer can be a cancer as described below. In a preferred embodiment, the TAA is TROP2.
In one embodiment, the invention pertains to a method for enhancing anti-tumor activity of an NK cell in a subject, the method comprising the step of administering to the subject a 4-1 BBL ECD mutein, a fusion protein or a conjugate as described herein, or a pharmaceutical preparation comprising the 4-1 BBL ECD mutein, the fusion protein or the conjugate as an active ingredient. In one embodiment, the subject has cancer, e.g. a cancer as described below. Preferably, the cancer comprises tumor cells expressing a TAA, more preferably the tumor cells express a TAA that is bound by the antigen binding protein in the conjugate. In a preferred embodiment, the TAA is TROP2.
In one embodiment, the invention pertains to a method for expanding and/or inducing hyperfunctionality NK cells a in a subject, the method comprising the step of administering to the subject a 4-1 BBL ECD mutein, a fusion protein or a conjugate as described herein, or a pharmaceutical preparation comprising the 4-1 BBL ECD mutein, the fusion protein or the conjugate as an active ingredient. The fold expansion and the hyper-functionality preferably is as herein described above. In one embodiment, the subject has cancer, preferably a cancer comprising tumor cells expressing
the TAA, more preferably the tumor cells express a TAA that is bound by the antigen binding protein in the conjugate. In a preferred embodiment, the TAA is TROP2.
Subjects having cancer, often present with lower numbers of NK cells and/or with exhausted NK cells. The 4-1 BBL ECD muteins or the conjugates of the invention can thus be advantageously used to expand the numbers of NK cells and/or to induce hyper-functionality of the NK cells in a subject suffering from cancer. A further advantage of the hyper-functionality of NK cells as induced by the 4-1 BBL ECD mutein, the fusion protein or the conjugate of the invention, includes their increased secretion of cytokines such as TNF-a, IFN-y and IL-6, which help shape adaptive immune response involving DCs and T cells. Indeed, NK cells have been reported to promote the recruitment to the tumor micro environment of a DC subset specializing in the cross-presentation of tumor antigens to CD8+ T cells, suggesting a crucial role for NK cells in the potentiation of antitumor CD8+ T cell responses (Bottcher et al., Cell, 2018. 172: 1022-1037; and Barry et al., Nat. Med. 2018. 24: 1178-1191). The contribution of NK cells to the orchestration of antitumor T-cell responses has also been confirmed experimentally in mice, demonstrating that, in addition to their direct effector functions, NK cell can promote T-cell responses and long-lasting immune control of tumors (Bonavita et al., Immunity 2020. 53: 1215-1229).
In various embodiment, there is provided the use of a 4-1 BBL ECD mutein, a fusion protein or a conjugate as described herein for the manufacture of a medicament, for example for the administration to a subject, wherein the subject has cancer, an infectious disease or an inflammatory disease.
In one embodiment, the TAA is a TAA as defined herein above and/or an antigen expressed on the surface of a malignant cell of a type of cancer as described below. In one embodiment, the TAA is a TROP2 as defined herein above and/or a TROP2 antigen expressed on the surface of a malignant cell of a type of cancer as described below. A subject to be treated in accordance with the methods described herein can have a cancer selected from the group consisting of: acute lymphoblastic, acute myeloid leukemia, adrenocortical carcinoma, appendix cancer, basal cell carcinoma, bile duct cancer, bladder cancer, bone cancer, osteosarcoma and malignant fibrous histiocytoma, brain stem glioma, brain tumor, brain tumor, brain stem glioma, central nervous system atypical teratoid/rhabdoid tumor, central nervous system embryonal tumors, cerebellar astrocytoma, cerebral astrocytoma/malignant glioma, craniopharyngioma, ependymoblastoma, ependymoma, medulloblastoma, medulloepithelioma, pineal parenchymal tumors of intermediate differentiation, supratentorial primitive neuroectodermal tumors and pineoblastoma, visual pathway and hypothalamic glioma, brain and spinal cord tumors, breast cancer, bronchial tumors, Burkitt lymphoma, carcinoid tumor, gastrointestinal carcinoid tumor, central nervous system atypical teratoid/rhabdoid tumor, central nervous system embryonal tumors, central nervous system lymphoma, cerebellar astrocytoma cerebral astrocytoma/malignant glioma, cervical cancer, chordoma, chronic lymphocytic leukemia, chronic myelogenous leukemia, chronic myeloproliferative disorders, colon cancer, colorectal cancer, craniopharyngioma, cutaneous T-cell lymphoma, esophageal cancer, Ewing family of tumors, extragonadal germ cell tumor, extrahepatic bile duct cancer, intraocular melanoma, retinoblastoma, gallbladder cancer, gastric (stomach)
cancer, gastrointestinal carcinoid tumor, gastrointestinal stromal tumor (gist), germ cell tumor, gestational trophoblastic tumor, glioma, glioma brain stem, glioma cerebral astrocytoma, glioma visual pathway and hypothalamic, hairy cell leukemia, head and neck cancer, hepatocellular (liver) cancer, Langerhans cell histiocytosis, Hodgkin lymphoma, hypopharyngeal cancer, hypothalamic and visual pathway glioma, intraocular melanoma, islet cell tumors, kidney (renal cell) cancer, Langerhans cell histiocytosis, laryngeal cancer, acute lymphoblastic leukemia, acute myeloid leukemia, chronic lymphocytic leukemia, chronic myelogenous leukemia, hairy cell leukemia, lip and oral cavity cancer, liver cancer, non- small cell lung cancer, small cell lung cancer, aids-related lymphoma, Burkitt lymphoma, cutaneous T-cell lymphoma, non-Hodgkin lymphoma, primary central nervous system lymphoma, Waldenstrom macroglobulinemia, malignant fibrous histiocytoma of bone and osteosarcoma, medulloblastoma, melanoma, Merkel cell carcinoma, mesothelioma, metastatic squamous neck cancer with occult primary, mouth cancer, multiple endocrine neoplasia syndrome, multiple myeloma/plasma cell neoplasm, mycosis, fungoides, myelodysplastic syndromes, myelodysplastic/myeloproliferative diseases, myelogenous leukemia, myeloid leukemia, myeloid leukemia acute, multiple myeloma, myeloproliferative disorders, nasal cavity and paranasal sinus cancer, nasopharyngeal cancer, neuroblastoma, non-small cell lung cancer, oral cancer, oral cavity cancer, oropharyngeal cancer, osteosarcoma and malignant fibrous histiocytoma of bone, ovarian cancer, ovarian epithelial cancer, ovarian germ cell tumor, ovarian low malignant potential tumor, pancreatic cancer, pancreatic cancer, papillomatosis, parathyroid cancer, penile cancer, pharyngeal cancer, pheochromocytoma, pineal parenchymal tumors of intermediate differentiation, pineoblastoma and supratentorial primitive neuroectodermal tumors, pituitary tumor, plasma celt neoplasm/multiple myeloma, pleuropulmonary blastoma, primary central nervous system lymphoma, prostate cancer, rectal cancer, renal cell (kidney) cancer, renal pelvis and ureter, respiratory tract carcinoma involving the nut gene on chromosome 15, retinoblastoma, rhabdomyosarcoma, salivary gland cancer, sarcoma, Ewing family of tumors, Kaposi sarcoma, soft tissue sarcoma, uterine sarcoma, Sezary syndrome, skin cancer (nonmelanoma), skin cancer (melanoma), Merkel cell skin carcinoma, small cell lung cancer, small intestine cancer, soft tissue sarcoma, squamous cell carcinoma, squamous neck cancer, stomach (gastric) cancer, supratentorial primitive neuroectodermal tumors, T-cell lymphoma, testicular cancer, throat cancer, thymoma and thymic carcinoma, thyroid cancer, transitional cell cancer of the renal pelvis and ureter, gestational trophoblastic tumor, urethral cancer, uterine cancer, uterine sarcoma, vaginal cancer, vulvar cancer, Waldenstrom macroglobulinemia, and Wilms tumor. In various embodiments, the cancer that can be treated by the disclosed methods and compositions is treated while healthy cells are spared.
In one embodiment, a 4-1 BBL ECD mutein, a fusion protein or a conjugate as described herein can be used as a monotherapy (i.e. without other therapeutic agents). In another embodiment, a 4-1 BBL ECD mutein, a fusion protein or a conjugate as described herein can be used in combined treatments.
In one embodiment, a 4-1 BBL ECD mutein, a fusion protein or a conjugate as described herein is used in combination with another immunotherapy, e.g. a cellular immunotherapy. The 4-
1 BBL ECD mutein, the fusion protein or the conjugate can thus be used in combination with the adoptive transfer of immune cells, including the adoptive transfer of T cells, e.g. CAR T cells, or NK cells. The NK cells can e.g. be enriched or expanded by methods known in the art or can be ex vivo expanded NK cells as herein described below.
In one embodiment, a 4-1 BBL ECD mutein, a fusion protein or a conjugate as described herein can be used in combined treatments with one or more other therapeutic agents. The additional therapeutic agent or agents normally utilized for the particular therapeutic purpose for which an antibody against a TAA (e.g. TROP2) is being administered. The additional therapeutic agent or agents will normally be administered in amounts and treatment regimens typically used for that agent in a monotherapy for the particular disease or condition being treated. Such therapeutic agents when used in the treatment of cancer, include, but are not limited to anti-cancer agents and chemotherapeutic agents. Exemplary therapeutic agents that may be used as part of a combination therapy in treating cancer, include, for example, radiation, mitomycin, tretinoin, ribomustin, gemcitabine, vincristine, etoposide, cladribine, mitobronitol, methotrexate, doxorubicin, carboquone, pentostatin, nitracrine, zinostatin, cetrorelix, letrozole, raltitrexed, daunorubicin, fadrozole, fotemustine, thymalfasin, sobuzoxane, nedaplatin, cytarabine, bicalutamide, vinorelbine, vesnarinone, aminoglutethimide, amsacrine, proglumide, elliptinium acetate, ketanserin, doxifluridine, etretinate, isotretinoin, streptozocin, nimustine, vindesine flutamide, drogenil, butocin, carmofur, razoxane, sizofilan, carboplatin, mitolactol, tegafur, ifosfamide, prednimustine, picibanil, levamisole, teniposide, improsulfan, enocitabine, lisuride, oxymethoIone, tamoxifen, progesterone, mepitiostane, epitiostanol, formestane, interferon-alpha, interferon-2 alpha, interferon-beta, interferon-gamma, colony stimulating factor-1 , colony stimulating factor-2, denileukin diftitox, interleukin-2, and luteinizing hormone releasing factor.
An additional class of agents that may be used as part of a combination therapy (including the use of a 4-1 BBL ECD mutein, a fusion protein or a conjugate as described herein) in treating cancer is immune checkpoint inhibitors. Exemplary immune checkpoint inhibitors include agents that inhibit one or more of (i) cytotoxic T-lymphocyte-associated antigen 4 (CTLA4), (ii) programmed cell death protein 1 (PD1), (iii) PD-L1 , (iv) LAG3, (v) B7-H3, (vi) B7-H4, and (vii) TIM3. Yet other agents that may be used as part of a combination therapy in treating cancer are monoclonal antibodies against TAA as described herein above. In a preferred embodiment, the TAA is TROP2.
In some embodiments the administration of a 4-1 BBL ECD mutein, a fusion protein or a conjugate as described herein and the other therapeutic agent can elicit an additive or synergistic effect on immunity and/or on therapeutic efficacy.
In one embodiment, a 4-1 BBL ECD mutein, a fusion protein or a conjugate as described herein is used as at least one of an neoadjuvant therapy and an adjuvant therapy, in addition to a primary therapy comprising e.g. surgery, chemo and/or radiation therapy. As a neoadjuvant therapy, the 4-1 BBL ECD mutein, the fusion protein or the conjugate is administered before the primary treatment, e.g. to help reduce the size of a tumor (such that less extensive surgery and/or radiation therapy is required), kill cancer cells that have spread (e.g. micrometastatic disease) and/or reduce the risk of tumor cells spreading post-surgery. As an adjuvant therapy, the 4-1 BBL ECD mutein, the
fusion protein or the conjugate is administered after the primary treatment, e.g. to treat minimal residual disease (destroy remaining cancer cells). The 4-1 BBL ECD mutein, the fusion protein or the conjugate can also be administered as a maintenance therapy, which is a long-term adjuvant therapy, e.g. administered repeatedly over the course of at least one month or one year. The use of the 4-1 BBL ECD mutein or a the conjugate as an neoadjuvant therapy and/or an adjuvant therapy lowers relapse rates. In the neoadjuvant therapy and/or adjuvant therapy, the 4-1 BBL ECD mutein, the fusion protein or the conjugate can be used as monotherapy or in in combined treatments as described above.
Ex vivo methods
In a further aspect, the invention relates to methods wherein a 4-1 BBL ECD mutein, a fusion protein or a conjugate as described herein is used for ex vivo (in vitro) treatment of an NK cell or a population of NK cells. The method can be a method for at least one of expanding, pre-activating, activating, enhancing cytotoxicity and/or cytokine production, and inducing a hyper-functional phenotype as defined above. The methods at least comprise the step of contacting an NK cell or a population thereof, with a 4-1 BBL ECD mutein, a fusion protein or a conjugate as described herein or with a composition comprising the 4-1 BBL ECD mutein, a fusion protein or the conjugate. In a preferred embodiment, the method comprises the further step of co-culturing the NK cells with tumor cells expressing a TAA specifically bound by the antigen binding protein in the conjugate. Preferably, the NK cells are co-cultured with the tumor cells expressing the TAA specifically bound by the antigen binding protein in the conjugate, in the presence of the conjugate. In a preferred embodiment, the TAA is TROP2.
An NK cell or a population of NK cells for ex vivo treatment can be enriched from peripheral blood mononuclear cells (PBMCs). Methods for enrichment and ex vivo treatment of NK cells from PBMCs are e.g. described in Denman et al. (pLoS One. 2012;7(1):e30264) and in US2020/0061115. For example, NK cells enriched from PBMCs can be seeded at 0.1 x 106 NK cells/mL in SCGM (CellGenix, Portsmouth, N.H.), supplemented with 10% FBS, 2 mM Glutamax, 100 U/mL IL-2 (Peprotech, Rocky Hill, N.J.) and 1 , 2, 5, 10, 20, 50, 100, 200, 500, 1000 pg/mL of one or more of the 4-1 BBL ECD muteins or a conjugates as described herein. Media with supplements can be refreshed every 2-3 days.
It is understood that the duration of the contact between the NK cells and a 4-1 BBL ECD mutein, a fusion protein or a conjugate as described herein (i.e. the duration of the pre-activation or activation (i.e., the duration of expanding, pre-activating, activating, enhancing cytotoxicity and/or cytokine production and inducing a hyper-functional phenotype) can be for any length of time necessary to achieve the desired phenotype of the NK cells. For example, the contact can be as little as 1 minute or as much as 7 days (for example, culturing the NK cells in the presence of a 4- 1 BBL ECD mutein, a fusion protein or a conjugate as described herein for 7 days). In one embodiment of the method, the NK cells are contacted with the 4-1 BBL ECD mutein, the fusion protein or the conjugate for 5, 6, 7, 8, 9, 10, 11 , 12, 13, 14, 15, 16, 17, 18, 19, 20, 21 , 22, 23, 24, 36, or 48 hours. In one embodiment of the method, the NK cells are contacted with the 4-1 BBL ECD
mutein, the fusion protein or the conjugate for 5, 6, 7, 8, 9, 10, 11 , 12, 13, 14, 15, 16, 17, 18, 19, 20, 21 , 22, 23, 24, 25, 26, 27, 28, 29, 30, 31 , 32, 33, 34, 35, 36, 37, 38, 39, 40, 41 , 42, 43, 44, 45, 46, 47, 48, 49, 50, 51 , 52, 53, 54, 55, 56, 57, 58, 59, 60, 61 , 62, 63, 64, 65, 66, 67, 68, 69, 70, 71 , or 72 days.
In one embodiment, the ex vivo treated (expanded) NK cells have one or more features selected from: a) the fold expansion of the expanded NK cells is at least 0.5, 1 .0, 2.0 or 5.0 fold of the fold expansion of expanded NK cells obtained by ex vivo expansion by co-culturing with irradiated FC21 feeder cells; b) the telomere length of the expanded NK cells is increased by at least 10, 15, 20, 25, 30, 35, 40, 45, 50 or 55% as compared to the telomere length of fresh NK cells, preferably, the percentage telomere length increase of the expanded NK cells as compared to the telomere length of fresh NK cells, is at least 0.5, 1 .0, 2.0 or 5.0 fold of the percentage telomere length increase of expanded NK cells obtained by ex vivo expansion by co-culturing with irradiated FC21 feeder cells; c) the expression level of at least one NK cell activating receptor selected from NKG2D, NKp30, NKp44, NKp46 and CD16 on the expanded NK cells is at least 0.5, 1 .0, 2.0 or 5.0 fold of the expression level on NK cells obtained upon ex vivo expansion in the presence of FC21 feeder cells; d) the secretion of at least one cytokine of TNF-a, IFN-y and IL-6 by the expanded NK cells is at least 0.5, 1.0, 2.0 or 5.0 fold of the secretion of the cytokine by NK cells obtained upon ex vivo expansion in the presence of FC21 feeder cells; and, e) the cytotoxicity of the expanded NK cells is at least 0.5, 1 .0, 2.0 or 5.0 fold of the cytotoxicity of NK cells obtained upon ex vivo expansion in the presence of FC21 feeder cells.
In yet a further aspect, the invention pertains to a method for the treatment of a disease in a subject in need thereof, wherein the method comprises the step of administering to the subject (an effective amount of) NK cells obtained in the above method for ex vivo treatment of an NK cell or a population of NK cells. Once a sufficient number of NK cells with the desired (hyper-functional) phenotype has been expanded by the ex vivo treatment, the NK cells can be administered to a subject in need thereof.
In one embodiment, the method for the treatment comprises the administration of the ex vivo treated NK cells in combination with a 4-1 BBL ECD mutein, a fusion protein or a conjugate as described herein, or a pharmaceutical preparation comprising the 4-1 BBL ECD mutein, the fusion protein or the conjugate as an active ingredient.
In one embodiment, the method for the treatment comprises the administration of the ex vivo treated NK cells in combination with another NK cell engager, such as e.g. described in WO2016/207278, WO 2018/148445, WO2018/152518, WO2019195409 US2018282386, Vallera et al. (2016, supra) and Demaria et al. (2021 , supra), or with a multispecific antigen binding protein as described in the co-pending applications by the same applicant WO2024/056862 and WO2024/056861 . One example of another NK cell engager is for example AVC-006 as described in WO2024/056862, comprising one HER2-binding region and one NKG2D-binding region. In a further embodiment, the ex vivo treated NK cells can be used in combination with the other engager and with a 4-1 BBL ECD mutein, a fusion protein or a conjugate as described herein.
The disease to be treated can be a cancer, an infectious disease, an inflammatory disease or an autoimmune disease, as described above. Preferably, the disease to be treated is a cancer, as described above. The cancer preferably is a cancer expressing a TAA that is specifically bound by the antigen binding protein in the conjugate that is administered in combination with the ex vivo treated NK cells. The administration of the ex vivo treated NK cells in combination with the conjugate will facilitate targeting of the administered ex vivo treated NK cells to tumor cells expressing the TAA that is specifically bound by the antigen binding protein in the conjugate.
In one embodiment, the ex vivo treated NK are autologous to the subject. In another embodiment, the ex vivo treated NK are allogeneic, e.g. derived from donor PBMCs.
Nucleic acids, host cells and methods for producing a 4-1 BBL ECD mutein, a fusion protein or a conjugate comprising such mutein
In one aspect, the invention relates to a nucleic acid molecule comprising one or more nucleotide sequences encoding a polypeptide chain of a 4-1 BBL ECD mutein, a fusion protein or a conjugate as described herein. The nucleotide sequence encoding such a polypeptide chain preferably encodes a signal peptide operably linked to the polypeptide chain. A nucleic acid molecule comprising one or more of the nucleotide sequences encoding a polypeptide chain, further preferably comprises regulatory elements for (or conducive to) the expression of the polypeptide chain in an appropriate host cell, which regulatory elements are operably linked to the nucleotide sequence.
In one aspect, the invention relates to a host cell comprising the nucleic acid molecule comprising one or more nucleotide sequences encoding a polypeptide chain of a 4-1 BBL ECD mutein, a fusion protein or a conjugate as described herein. In one embodiment, the host cell is an isolated cell or a cultured cell. Among the host cells that may be employed are prokaryotes, yeast or higher eukaryotic cells. Prokaryotes include gram-negative or gram-positive organisms, for example Escherichia coll or bacilli. Suitable yeast cells include Saccharomyces cerevisiae and Pichia pastoris. Higher eukaryotic cells include insect cells and established cell lines of mammalian origin. Examples of suitable mammalian host cell lines include the COS-1 , COS-7 line of monkey kidney cells (Gluzman et al., 1981 , Cell 23:175), L cells, HEK 293 cells (e.g. Expi293, HEK293-F and HEK293-E cells), C127 cells, 3T3 cells, Chinese hamster ovary (CHO) cells (e.g. ExpiCHO cells), HeLa cells, BHK cell lines, e.g. BHK21 , BSC-1 , Hep G2, 653, SP2/0, and the CVI/EBNA cell line derived from the African green monkey kidney cell line CVI as described by McMahan et al. (1991 , EMBO J. 10: 2821). The host cell may be any suitable species or organism capable of producing N-linked glycosylated polypeptides, e.g. a mammalian host cell capable of producing human or rodent IgG type N-linked glycosylation. Appropriate cloning and expression vectors for use with bacterial, fungal, yeast, and mammalian cellular hosts are described by Pouwels et al. (Cloning Vectors: A Laboratory Manual, Elsevier, N.Y., 1985). Host cells comprising the nucleic acid molecule of the invention can be cultured under conditions that promote expression of the polypeptide.
Thus, another aspect the invention relates to a method for producing a 4-1 BBL ECD mutein, a fusion protein or a conjugate as described herein. The method preferably comprises culturing a host cell as described above such that one or more nucleotide sequences are expressed and the 4-1 BBL ECD mutein, the fusion protein or the conjugate is produced. The method preferably comprises the step of cultivating a host cell comprising one or more of the nucleotide sequences encoding a polypeptide chain of the 4-1 BBL ECD mutein, the fusion protein or the conjugate. The host cell is preferably cultured under conditions conducive to expression of the one or more polypeptide chains. The method can further comprise the step of recovering the 4-1 BBL ECD mutein, the fusion protein or the conjugate. The 4-1 BBL ECD mutein, the fusion protein or the conjugate can be recovered by conventional protein purification procedures, including e.g. protein A-Sepharose, hydroxylapatite chromatography, gel electrophoresis, dialysis, size exclusion chromatograpy or affinity chromatography, using e.g. streptavidin/biotin (see e.g. Low et al., 2007, J. Chromatography B, 848:48-63; Shukla et al., 2007, J. Chromatography B, 848:28-39).
In a further aspect, the invention relates to a method for producing a pharmaceutical composition comprising a 4-1 BBL ECD mutein, a fusion protein or a conjugate as described herein, the method comprising the steps of a) producing the 4-1 BBL ECD mutein, the fusion protein or the conjugate in a method as defined above; and b) formulating the 4-1 BBL ECD mutein, the fusion protein or the conjugate with a pharmaceutically acceptable carrier as defined above, to obtain a pharmaceutical composition.
The present invention has been described above with reference to a number of exemplary embodiments as shown in the drawings. Modifications and alternative implementations of some parts or elements are possible, and are included in the scope of protection as defined in the appended claims.
Description of the figures
Figure 1 . NK boosters comprising IL-21 or 4-1 BBL ECD muteins show impaired capacity to induce proliferation only in the absence of tumor cells. NK booster AVC37 (a conjugate of trastuzumab and the I8H IL-21 mutein and wild type 4-1 BBL ECD) and NK booster AVC52 (a conjugate of trastuzumab and wild type IL-21 and the V153Q 4-1 BBL ECD mutein) show strongly impaired capacity to induce proliferation of NK cells but only in the absence of SKOV3 tumor cells expressing HER2. In the presence of SKOV3 tumor cells the ability of NK boosters AVC37 and AVC52 is comparable to that of control NK booster AVC1 (a conjugate of trastuzumab and wild type IL-21 and wild type 4-1 BBL ECD mutein). NK cells were cultured for 5 days with (dashed lines) or without (solid lines) tumor cells and indicated NK boosters in concentrations as indicated. Data shown is from measurements taken at the end of the co-culture. The darker and lighter grey areas indicate historical averages and the standard deviation obtained with AVC1 , with and without tumor cells present, respectively.
Figure 2. Also NK booster AVC54 (a conjugate of trastuzumab and wild type IL-21 and the Q227E 4-1 BBL ECD mutein) show strongly impaired capacity to induce proliferation of NK cells but only in the absence of SKOV3 tumor cells expressing HER2. In the presence of SKOV3 tumor cells the ability of NK boosters AVC37 and AVC52 is comparable to that of control NK booster AVC1 (a conjugate of trastuzumab and wild type IL-21 and wild type 4-1 BBL ECD mutein). NK cells were cultured for 5 days with (dashed lines) or without (solid lines) tumor cells and indicated NK boosters in concentrations as indicated. Data shown is from measurements taken at the end of the co-culture.
Figure 3. NK boosters comprising various 4-1 BBL ECD as indicated show impaired capacity to induce proliferation as compared to a corresponding control NK booster AVC1 comprising wild type 4-1 BBL ECD. NK cells were cultured for 5 days without tumor cells and indicated NK boosters, data shown is from measurements taken at the end of the co-culture. data shown is from measurements taken at the end of the co-culture.
Figure 4. NK cell cytotoxicity against SKOV3 tumor cells, as induced by NK boosters comprising IL- 21 or 4-1 BBL ECD muteins, is unaffected by IL-21 or 4-1 BBL mutations. NK cells were co-cultured for 5 days with tumor cells in the presence of NK booster AVC37 (a conjugate of trastuzumab and the I8H IL-21 mutein and wild type 4-1 BBL ECD), NK booster AVC52 (a conjugate of trastuzumab and wild type IL-21 and the V153Q 4-1 BBL ECD mutein) or control NK booster AVC1 (a conjugate of trastuzumab and wild type IL-21 and wild type 4-1 BBL ECD mutein), respectively, in concentrations as indicated. Data shown is from measurements taken at the end of the co-culture.
Figure 5. The ability of NK boosters comprising IL-21 or 4-1 BBL ECD muteins to induce and support long-term NK cell expansion is unaffected. NK cells were expanded for 14 days with SKOV3 tumor cells that were opsonized with indicated NK boosters. Fold expansion of NK cells after 14 days is indicated.
Figure 6. Left hand panels show dose-response curves of NK boosters with 4-1 BBL ECD muteins in a 4-1 BB reporter cell assay, compared with control booster AVC1 with wild type 4-1 BBL. Righthand panels show the responses fitted at 100 nM booster and EC50 values in nM are given on the far-right. A) compares boosters AVC50, AVC51 , AVC52, AVC53 and AVC54 to control booster AVC1 ; B) compares boosters AVC55, AVC56, AVC57, AVC58 and AVC59 to control booster AVC1 ; and C) compares boosters AVC46, AVC47, AVC48 and AVC49 to control booster AVC1 .
Figure 7. pECso values a 4-1 BB reporter cell assay (x-axis) of the NK boosters with 4-1 BBL ECD muteins as indicated and of control booster AVC1 with wild type 4-1 BBL are plotted against the affinities of the boosters for 4-1 BB as determined by surface plasmon resonance (y-axis).
Figure 8. Induction of NK cell expansion by the NK boosters with 4-1 BBL ECD muteins as indicated compared to that of control booster AVC1 with wild type 4-1 BBL.
Figure 9. Long-term cytotoxicity against SKOV-3 tumor cells by NK cells stimulated with NK booster AVC59 with the 4-1 BBL ECD A154D mutein or the wild type control booster AVC1 upon repeated co-culture with SKOV-3 tumor cells. After each 3-day cycle, NK cells were were harvested and used to set up a new cycle of co-culture with fresh target cells at a 1 :1 E:T ratio. The boosters AVC1 or AVC59 or a control protein (a trastuzumab analog) were added at the start of each 3-day cycle to expose NK cells to new booster proteins at the beginning of every cycle. Control wells contained only NK cells and SKOV-3 target cells (NK + SKOV3), or only SKOV-3 target cells (SKOV3 only).
Figure 10. Long-term NK cell cytotoxicity induced by the multispecific antigen binding proteins AVC- 001 and AVC-016, against tumor cell lines expressing the respective tumor-associated antigens: (A) AVC-001 (AVC1) with SKOV-3 tumor cells expressing HER2; (B) AVC-016 (AVC16) with BxPC3 tumor cells expressing TROP2. NK cell cytotoxicity induced by the multispecific antigen binding proteins against tumor cells that express the respective antigens (open sguares) is followed over time (hours) and compared to the cytotoxicity of NK cells only (solid circles).
Figure 11. Interferon-gamma levels after co-culture with tumor cells that express the respective antigen. Data is shown as fold change over vehicle (NK cells + tumor cells). (A) AVC-001 (AVC1) with SKOV-3 tumor cells expressing HER2; (B) AVC-016 (AVC16) with BxPC3 tumor cells expressing TROP2.
Figure 12. Long-term cytotoxicity against (TROP2-expressing) BxPC3 tumor cells by NK cells stimulated with NK boosters AVC16 (based of Sacituzumab), AVC221 (based of AR47A6.4.2, described in US2008131428A1) and AVC227 (based of KM4097, described in US20120237518A1) upon repeated co-culture with BxPC3 tumor cells. After each 3-day cycle, NK cells were were harvested and used to set up a new cycle of co-culture with fresh target cells at a 1 :1 E:T ratio. The NK boosters were added at the start of each 3-day cycle to expose NK cells to new booster protein at the beginning of every cycle. Control wells contained only NK cells and BxPC3 target cells (NK + BxPC3), or only BxPC3 target cells (BxPC3 only).
Figure 13. Long-term cytotoxicity against (TROP2-expressing) BxPC3 tumor cells by NK cells stimulated with NK boosters AVC16 (based of Fab-fragments from sacituzumab and comprising wild type IL-21 and a trimer of wild type 4-1 BBL ECD), AVC267 (based of Fab-fragments from sacituzumab and comprising the IL-21 L20W mutein and a trimer of wild type 4-1 BBL ECD) and control protein AVC 137 (a sacituzumab analogue without IL-21 or 4-1 BBL cytokines) upon repeated co-culture with BxPC3 tumor cells. After each 3-day cycle, NK cells were were harvested and used to set up a new cycle of co-culture with fresh target cells at a 1 :1 E:T ratio. The NK boosters were added at the start of each 3-day cycle to expose NK cells to new booster protein at the beginning of every cycle. Control wells contained only NK cells and BxPC3 target cells (NK + BxPC3), or only BxPC3 target cells (BxPC3 only).
Figure 14. Long-term cytotoxicity against (TROP2-expressing) BxPC3 tumor cells by NK cells stimulated with NK boosters AVC16 (based of Fab-fragments from sacituzumab and comprising wild type IL-21 and a trimer of wild type 4-1 BBL ECD), AVC245 (based of Fab-fragments from sacituzumab and comprising the IL-21 DEL7 (N82- A83- G84- R85- R86- Q87- K88-) mutein and a trimer of 4-1 BBL ECD A154D mutein) and control protein AVC 137 (a sacituzumab analogue without IL-21 or 4-1 BBL cytokines) upon repeated co-culture with BxPC3 tumor cells. After each 4- 5 day cycle, NK cells were were harvested and used to set up a new cycle of co-culture with fresh target cells at a 1 :1 E:T ratio. The NK boosters were added at the start of each cycle to expose NK cells to new booster protein at the beginning of every cycle. Control wells contained only NK cells and BxPC3 target cells (NK + BxPC3), NK cells with BxPC3 target cells and PBS (Vehicle), or only BxPC3 target cells (BxPC3 only).
Figure 15. In vivo pharmakinetics for NK boosters AVC16 and AVC245 compared to control antibodies AVC137 and trastuzumab. Mice were injected i.v. with 1 mg/kg body weight of the boosters or antibodies. Blood sample for analysis were drawn at indicated times after injection and levels of boosters and control antibodies in mouse serum was determined by ELISA.
Figure 16. In vivo efficacy of the AVC245 booster in reducing tumor burden in a mouse xenograft model is significantly greater than that of controls of tumor-only, NK cells + tumor or the control antibody AVC137 without the 4-1 BBL and IL-21 muteins.
Figure 17. In vivo efficacy of the AVC245 booster in inducing expansion of donor NK cells in a mouse xenograft model is significantly greater than that of controls of tumor-only, NK cells + tumor or the control antibody AVC137 without the 4-1 BBL and IL-21 muteins.
Examples
Example 1
1.1 Methods and materials
1.1.1 Reagents NK cell expansion
SK-OV-3 cell line medium
Effector cells (NK) complete media
1 .1 .2 Maintenance of SKOV3 WT cell line SK-OV-3
Split sub-confluent cultures (70-80%)
1 . Remove and discard culture medium.
2. Briefly rinse the cell layer with 0.25% (w/v) Trypsin- 0.53 mM EDTA solution to remove all traces of serum that contains trypsin inhibitor.
3. Add 2 to 3 mL of Trypsin-EDTA solution to flask and observe cells under an inverted microscope until cell layer is dispersed (usually within 5 to 15 minutes).
Note: To avoid clumping do not agitate the cells by hitting or shaking the flask while waiting for the cells to detach. Cells that are difficult to detach may be placed at 37°C to facilitate dispersal.
4. Add 6 to 8 mL of complete growth medium and aspirate cells by gently pipetting.
5. Add appropriate aliquots of the cell suspension to new culture vessels.
6. Incubate cultures at 37°C.
Sub cultivation Ratio: A sub cultivation ratio of 1 :2 to 1 :3 is recommended i.e., seeding at 3-6x10,000 cells/cm2
Medium Renewal: Every 2 to 3 days
1.1.3 Media
Growth and Test medium
McCoy’s 5a medium modified + 2mM glutamine + 15% FBS + 1 % Penicillin Streptomycin
Freezing medium
FCS + 10% DMSO
1 .1 .4 PBMC sort and NK isolation
Human peripheral blood mononuclear cells (PBMC) were isolated from healthy donors using a density gradient centrifugation method. Briefly, the buffy coat fraction was overlaid onto Histopaque in a falcon tube for density centrifugation. After centrifugation at 500g for 30 min at RT the mononuclear cell fraction was harvest from the interface into a new falcon tube. Cells underwent several washes steps and lysis to remove red blood cell contamination. Subsequently, CD56+ cells were obtained by magnetic cells sorting using the system from Miltenyi Biotec according to the manufacturer's instructions (Miltenyi- 130-097-042). Following separation and an aliquot of sorted NK cells was taken for post-sort purity check.
1 .1 .5 Irradiation of SK-OV-3
E:T ratio= 1 :2 (NK: SK-OV-3)
• 8x106 cells per flask x (X conditions) x (Y Donors)
1. Irradiate extra cells to account for possible cell loss following irradiation. Maintain enough cells to expand for Day 7 restimulation.
2. Resuspend required number of cells @ 5 x 106 cells/mL
3. Perform irradiation at 100Gy.
4. Count cells post-irradiation and adjust to 5 x 106 cells/mL.
1 .1 .6 Opsonisation of SK-OV-3 cells
1 . Prepare test compounds.
2. Spike in required stock volume to irradiated SK-OV-3 to the required concentration (25 nM) and leave to opsonise for 30 minutes in a flask in 37°C incubator.
3. Wash cells by spinning at 300 x g for 5 mins.
4. Count cells and adjust density to 3.2 x 106/mL.
1.1.7 Seeding NK cells for 14-day expansion
1 . Adjust NK cells to required density - 1 .6 x 106/mL in NK media containing IL-2 (50 lU/mL)
2. Seed 2.5 mL of NK cells per flask (4 x 106 total cells per flask).
3. Seed 2.5 mL of 3.2 x 106/mL compound or vehicle opsonised SK-OV-3 cells according to appropriate flask maps.
4. To all flasks, add 17.5 mL of 2 x IL-2 complete media and 17.5 mL of complete media without IL-
2. This is to bring the IL-2 activity to 50 ILI/mL.
5. Total final volume per T75 flask will be 40 mL.
1 .1 .8 Cytotoxicity measurements
NK cells and NucLight-Red (NLR) transduced SKOV3 tumor cells were co-cultured in a 2:1 ratio for 5 days with NK boosters present in different concentrations, using a 7-step 4-fold dilution series starting at 25 nM thus covering a range from 25 nM to 0.01 nM. The number of NLR-positive cells was quantified by an Incucyte automated microscope every 4 hours throughout the duration of culture and compared to the control condition where NK cells were co-cultured with NLR SKOV3 cells in the absence of NK boosters. Cytotoxicity was calculated as follows:
% target cell lysis = 100
1.1.9 Proliferation measurements
NK cells were labeled with a amine-reactive cell proliferation dye (CPD), for example CellTrace Violet (Thermo Scientific, cat# C34557). Subsequently, labeled NK cells were used either in a coculture with SKOV3 cells or cultured by themselves with NK boosters present in different concentrations. In the case of a co-culture with SKOV3 cells a 7-step 4-fold dilution series starting at 25 nM thus covering a range from 25 nM to 0.01 nM was used. When only NK cells were cultured
an 8-step 3-fold dilution series which covers a range from 100 nM to 0.01 nM was used instead. After a 5 day (co-)culture, NK cells were analyzed by flow cytometry for cell proliferation dye content, and the percentage of CPD-low cells was used as a read-out for proliferation. 1.1.10 Production of NK boosters
NK cell boosters (also referred to conjugates herein) as listed in Tables 1.1.10.1 and 1.1.10.2, having amino acid sequences as shown in the sequence listing, were prepared, purified and characterized essentially as described in WO2024/056862. Table 1 .1 .10.1 . Overview of the HER2-targeting NK cell boosters with 4-1 BBL and/or IL-21 muteins as indicated and their corresponding amino acid sequences in the sequence listing. AVC1 is the control NK cell booster with wild type 4-1 BBL and IL-21 .
Table 1 .1 .10.2. Overview of the TROP2-targeting NK cell boosters with 4-1 BBL and/or IL-21 muteins and control protein AVC137 (without 4-1 BBL and IL-21) as indicated and their corresponding amino acid sequences in the sequence listing.
1.1.11 Affinity of NK boosters for 4-1 BB or IL-21 R
Affinity of the boosters for 4-1 BB or IL-21 R was analyzed using a Biacore T200 instrument at 25 °C and a flow rate of 50 pl/min. A C1 sensor chip was functionalized for a reversible biotin capture assay in all flow cells (fc1-fc4). The analysis buffer consisted of 10 mM HEPES (pH 7.4), 150 mM NaCI, 0.05% Tween 20, and 3 mM EDTA. Each assay cycle proceeded as follows: the biotin capture reagent was introduced over all surfaces (fc1-fc4), 4-1 BB or IL-21 R was captured specifically on flow cell 2 (fc2), and the boosters were injected in five serial dilutions (starting at different concentrations) for a 60-second association phase and a 600/1200s dissociation phase (the longer dissociation was applied after the highest concentration). A standard regeneration protocol was then applied to completely remove the ligand-receptor complex from all surfaces, restoring the chip to baseline before the next cycle.
1.1.12 4-1 BB reporter assay
NK boosters were incubated for 6 hours with 4-1 BB Effector cells (Promega, cat# JA2351), followed by addition of Bio-Gio reagent and measurement of luciferase activity on a luminometer.
1.1.13 Long-term repeated NK cell cytotoxicity assay
A repeated co-culture system was set up, similar to the set-up used by Thakur et al. (J Cancer Res Clin Oncol. 2020 Aug; 146(8): 2007-2016.) to study repeated cytotoxicity of CAR-Ts with a HER2- EGFR bi-specific binder. Since for these longer term measurements an idea of general cell culture state is desirable, an Incucyte ® Live-Cell Analysis System was used. SKOV-3 target cells and NK cells (purified via negative selection using RosetteSep from normal donor buffy coats as above) were used in an E:T ratio of 1 :1 . The SKOV-3 target cells were lentivirally transduced with Nuclight Red (Sartorius Cat# 4625) to allow read-out of fluorescently labeled target cell counts. Assays were performed in triplicate.
A fixed amount of 10,000 fluorescently labeled target cells in 200 pl medium per well was used to ensure a sufficient amount of nutrients for at least 3 days of culture. Co-culture was performed in the presence of 50 lU/mL IL-2. After 3 days, NK cells were harvested and used to setup a new round of co-culture with fresh target cells in a 1 :1 E:T ratio. 25 nM of the NK boosters were added at the start of each 3 day round to expose NK cells to new booster proteins at the beginning of every round. Control wells contained only NK cells and SKOV-3 target cells, or only SKOV-3 target cells. Cells were monitored and fluorescently labeled target cells were counted every 3 hours. The experiment was continued for 6 co-culture rounds, i.e., for 18 days.
1.1.14 In vivo pharmakinetics data
Male C57BI16/J mice (n = 3) were injected i.v. with 1 mg test article per kg body weight. Test articled were NK boosters AVC16 and AVC245 and control antibodies AVC137 and trastuzumab. Blood
sample for analysis were drawn 15 minutes, 2 hours and 1 , 3 and 7 days after injection. Detection and quantification of booster and control antibodies in the mouse serum was done by sandwich ELISA using TROP2, or in the case of trastuzumab HER2 coated plates. Serum levels were converted from absorbance to ng/mL using the corresponding standard curves of each test article and plotted against elapsed time.
1.1.15 In vivo efficacy data of NK cell booster
Efficacy of AVC245 in in vivo induction of expansion of NK cells and reducing tumor burden was assessed in SKOV-3 xenograft mice relative to IgG TROP2-targeting control. Age-matched female NRG mice receive non-lethal low dose total body irradiation at Day -1 with 230 cGy. On Day 0, 1 x 106 human donor NK cells in 400 pL per mouse were injected i.p. At Day 7 the mice were engrafted with 5x105 Luciferase-expressing SKOV-3 cells (SKOV-3-Luc) via i.p. injection. For treatments with AVC137 and AVC245, groups of 10 mice were used, and for the tumor-only and NK +tumor controls, groups of 5 mice were used. Beginning on Day 0, AVC137 (5.09 mg/kg), or equimolar AVC245 (8 mg/kg), or vehicle was injected i.p. 3x per week (i.e., Monday, Wednesday, and Friday) for the first week and 2x/week (i.e., Monday and Friday) subsequent weeks. Beginning on Day 0, 5000 lU/mouse of recombinant human IL-2 will be injected i.p. 3x per week (i.e., Monday, Wednesday, and Friday).
At Days 7 and 18, 100 uL of peripheral blood was collected from each mouse and used for staining to determine absolute NK cell numbers per mL of blood via flow cytometry. Blood was collected prior to any treatments scheduled for the day.
Tumor burden was quantified on the first day of each week (Day 7, 14, 21 , etc.) via bioluminescent imaging (BLI) using auto exposure. With the exception that the first BLI was conducted on Day -1 in lieu of Day 0 and the final BLI on the day prior to experiment endpoint. BLI was done prior to any injections (i.e., NK cells, AVC, IL-2) that day.
1.2 Results
Figures 1 and 2 show that NK boosters comprising IL-21 and 4-1 BBL ECD muteins show impaired capacity to induce proliferation, but only in the absence of tumor cells. Figure 1 shows doseresponse curves for NK booster AVC37, NK booster AVC52 and control NK booster AVC1. Figure 2 shows dose-response curves for NK booster AVC54 and control NK booster AVC1. NK boosters AVC37, AVC52 and AVC54 show strongly impaired capacity to induce proliferation of NK cells but only in the absence of SKOV3 tumor cells that express HER2. In the presence of SKOV3 tumor cells the ability of NK boosters AVC37, AVC52 and AVC54 to induce NK cell proliferation is comparable to that of control NK booster AVC1 .
Figure 3 shows dose-response curves for various further NK boosters comprising different 4-1 BBL ECD muteins as indicated on their ability to induce NK cell proliferation in the absence of tumor cells. As can be seen, the various NK boosters with different 4-1 BBL ECD muteins have reduced
abilities to different degrees for inducing NK cell proliferation in the absence of tumor cells, as compared to a corresponding control NK booster AVC1 comprising wild type 4-1 BBL ECD.
Figure 4 shows that NK cell cytotoxicity against SKOV3 tumor cells, as induced by NK boosters comprising IL-21 and 4-1 BBL ECD muteins, is unaffected by the IL-21 or 4-1 BBL ECD mutations in AVC37 and AVC54, respectively. The dose-response curves of AVC37 and AVC54 for inducing NK cell cytotoxicity against SKOV3 tumor cells does not significant differ from that of the corresponding control NK booster AVC1 comprising wild types of IL-21 and 4-1 BBL ECD.
Figure 5 shows that the ability of NK boosters AVC37 or AVC52, comprising IL-21 or 4-1 BBL ECD muteins respectively, to induce and support long-term NK cell expansion is hardly affected.
Table 1 .2.1 presents the reduced binding affinities for 4-BB of NK booster comprising 4-1 BBL ECD muteins as indicated, as compared to a corresponding control NK booster AVC1 , comprising wild type 4-1 BBL ECD.
Figure 6A, B and C show that NK boosters with 4-1 BBL ECD muteins with reduced affinity for 4- 1 BB, also have a reduced potency in a 4-1 BB reporter cell assay. In fact, Figure 7 shows there is a strong correlation between affinity as measured by SPR and functionality in the 4-1 BB reporter assay.
Table 1 .2.1 . Overview of the reduced binding affinities for 4-1 BB of the boosters, and of their ability to induce of proliferation of NK cells in the presence of SKOV3 tumor cells at saturating concentration (25 nM) of boosters comprising trimers of 4-1 BBL ECD muteins combined with wild type IL-21 as indicated, expressed as percentage of control booster AVC1 (with a trimer ofwild type 4-1 BBL ECD and wild type IL-21).
Table 1 .2.1 presents the reduced binding affinities for 4-1 BB of NK boosters comprising trimers of 4-1 BBL ECD muteins as indicated, as compared to a corresponding control NK booster AVC1 , comprising a trimer of wild type 4-1 BBL ECD. Table 1 .2.1 further presents the ability of the boosters to induce of proliferation of NK cells in the presence of SKOV3 tumor cells at saturating concentration (25 nM) of the boosters, expressed as percentage of control booster AVC1. As can be seen in Table 1.2.1 , the affinity for 4-1 BB of many of the NK boosters with 4-1 BBL muteins is reduced by at least one order of magnitude compared the AVC1 booster with wild type 4-1 BBL. Surprisingly however, in view of the above-mentioned strong correlation between affinity and functionality, despite their reduced affinity for 4-1 BB, a subset of these boosters retained much of their ability to induce proliferation of NK cells in the presence of SKOV3 tumor cells to a similar degree as the control booster AVC1 with wild type IL-21 , as their ability to induce proliferation is reduced less than 30%, up to even less than 3%, of the control booster.
Most of the NK boosters with 4-1 BBL muteins retain their potency to induce NK cell expansion compared to the AVC1 control booster with wild type 4-1 BBL (Figure 8). NK cells were seeded in the presence of booster or vehicle (opsonised SK-OV-3 cells) and expansion of NK cells was followed over the course over 14 days as described in Example 1.1.7. As shown in Figure 8, the reduced affinity of the boosters for 4-1 BB does not significantly impact expansion compared to AVC1 , except for AVC55 which shows lower expansion compared to AVC1 and the other boosters. Figure 9 shows the results the long-term repeated NK cell cytotoxicity assay as described in Example 1.1.13. NK booster AVC59 comprising the A154D 4-1 BBL ECD mutein was compared to control booster AVC1 comprising wild type 4-1 BBL ECD. Further controls contained vehicle, only NK cells and SKOV-3 target cells, or only SKOV-3 target cells. As can be seen in Figure 9, the AVC59 booster shows similar efficacy in a long-term cytotoxicity assay as the wild type booster AVC1.
Table 1 .2.2. Overview of the reduced binding affinities for IL-21 R of selected boosters comprising IL-21 muteins and a trimer of wild type 4-1 BBL ECD as compared to control booster AVC1 (with a trimer of wild type 4-1 BBL ECD and wild type IL-21).
In Table 1.2.3, the boosters’ ability to induce maximal proliferation of NK cells in the presence of SKOV3 tumor cells is determined at a saturating concentration of 25 nM booster. The boosters’ ability to induce maximal NK cell proliferation is determined for boosters comprising IL-21 muteins combined with either wild type 4-1 BBL ECD or the 4-1 BBL A154D mutein with reduced affinity for its cognate receptor 4-1 BB and compared with control booster AVC1 . Also presented in Table 1 .2.3 for each of the boosters are their pECso values for the induction of proliferation of NK cells in the presence of SKOV3 tumor cells. Table 1 .2.3. Overview of the ability of induction of proliferation of NK cells in the presence of SKOV3 tumor cells at saturating concentration (25 nM) of boosters comprising IL-21 muteins combined with trimers of wild type 4-1 BBL ECD or the 4-1 BBL A154D mutein as indicated, expressed as percentage of control booster AVC1 (with a trimer of wild type 4-1 BBL ECD and wild type IL-21). pECso values of the boosters for the induction of proliferation of NK cells in the presence of SKOV3 tumor cells are also shown.
As can be seen in Table 1.2.3, the ability to induce proliferation of NK cells in the presence of SKOV3 tumor cells of NK cell boosters comprising a wild type 4-1 BBL ECD and a number of selected IL-21 muteins with reduced affinity for IL-21 R is hardly affected compared to the corresponding booster with wild type IL-21 . The pECso values are not reduced by no more than log 0.5 compared to the control booster and the maximum induced proliferation at saturating booster concentrations is not reduced by more than 10% compared to the control booster.
However, when the wild type 4-1 BBL ECD in these boosters is substituted for the reduced affinity- 4-1 BBL ECD A154D mutein, the pECso values are still not reduced by no more than log 0.5 compared to the control booster but the maximum induced proliferation at saturating booster concentration is significantly reduced up to more than 50% compared to control for at least two of the IL-21 muteins. In contrast, the IL-21 muteins L20W retains most of its ability to maximally induce NK cell proliferation in combination with the 4-1 BBL mutein, with no more than about 10% reduction in maximally induced proliferation as compared to the corresponding wild type control booster AVC1. And the AVC190 booster, comprising the combination of the 4-1 BBL ECD mutein A154D and the IL-21 mutein DEL7 (N82- A83- G84- R85- R86- Q87- K88-) even outperforms the wild type control booster AVC1 in terms of maximum induced proliferation at saturating booster concentration.
Similar results as those obtained above with boosters targeting the HER2 as TAA are also obtained with boosters targeting TROP2 as TAA. The ability to induce NK cell cytotoxicity was compared for boosters AVC1 and AVC16, targeting HER2 and TROP2, respectively. Long-term NK cell cytotoxicity induced by the conjugates AVC1 and AVC16 was determined essentially as described in Example 1.1.13, except that only a single round co-culture of NK cells and target cells was performed and followed for 96 hours. Briefly, NK cell cytotoxicity was determined against tumor cell lines expressing a TAA specifically bound by the conjugates AVC1 and AVC16 as indicated in Table 1 .2.4. A single round of co-culture of NK cells and target cells, in a E:T ratio of 2:1 (20,000 NK cells : 10,000 tumor cells) was followed for 96 hours, in the absence or presence of the multispecific antigen binding proteins at 25 nM. Control wells thus contained only NK cells and the respective target tumor cells. Assays were performed in triplicate. Interferon-gamma levels were determined in the supernatant using the MACSplex cytotoxic IFN-y kit (cat #130-125-800).
Table 1.2.4 Target tumor cell lines used for determination of NK cell cytotoxicity induced by the multispecific antigen binding proteins AVC1 and AVC16.
The results for A VC 1 and AVC16 are shown in Figures 10A and 10B, respectively. Each of the multispecific antigen binding proteins AVC1 and AVC16 significantly induce increased cytotoxicity against tumor cells that express the respective antigens compared to NK cells only. Similarly, Figures 11A and 11 B show that the same set of multispecific antigen binding proteins induce increase interferon-gamma production in response to co-culture with tumor cells that express the respective antigens. Hence, similar stimulatory effects of the multispecific antigen binding proteins, in terms of inducing TAA-targeted NK cell cytotoxicity or induction of interferon-gamma production, are achieved when targeting either HER2 or TROP2 as tumor-associated antigen.
Figure 12 shows a comparison of NK boosters AVC16 (based of Fab-fragments from sacituzumab), AVC221 (based of Fab-fragments from AR47A6.4.2, described in US20120237518A1) and AVC227 (based of Fab-fragments from AR47A6.4.2, described in US2008131428A1) in the longterm repeated NK cell cytotoxicity assay as described in Example 1 .1 .13. Further controls only NK cells and BxPC3 target cells (i.e. without Booster) or only BxPC3 target cells. As can be seen in Figure 12, NK boosters AVC16, AVC221 and AVC227, each based of different TROP2-antigen binding proteins, have equal efficacies in inducing NK cell-cytotoxicity against TROP2-expressing BxPC3 tumor cells.
Figure 13 shows a comparison of NK boosters AVC16 (based of Fab-fragments from sacituzumab and comprising wild type IL-21 and a trimer of wild type 4-1 BBL ECD), AVC267 (based of Fab- fragments from sacituzumab and comprising the IL-21 L20W mutein and a trimer of wild type 4- 1 BBL ECD) and control protein AVC 137 (a sacituzumab analogue without IL-21 or 4-1 BBL cytokines) in the long-term repeated NK cell cytotoxicity assay as described in Example 1.1.13. Further controls only NK cells and BxPC3 target cells (i.e. without Booster) or only BxPC3 target cells. As can be seen in Figure 13, the NK booster AVC267 comprising the IL-21 mutein L20W shows a similar long-term in vitro tumor control as the AVC16 booster with wild type IL-21 .
Figure 14 shows a comparison of NK boosters AVC16 (based of Fab-fragments from sacituzumab and comprising wild type IL-21 and a trimer of wild type 4-1 BBL ECD), AVC245 (based of Fab- fragments from sacituzumab and comprising the IL-21 DEL7 (N82- A83- G84- R85- R86- Q87- K88-
) mutein and a trimer of 4-1 BBL ECD A154D mutein) and control protein AVC 137 (a sacituzumab analogue without IL-21 or 4-1 BBL cytokines) in the long-term repeated NK cell cytotoxicity assay as described in Example 1 .1.13. Further controls only NK cells and BxPC3 target cells (i.e. without Booster) or only BxPC3 target cells. As can be seen in Figure 14, the NK booster AVC245 comprising both IL-21- and 4-1 BBL ECD-muteins shows a long-term in vitro tumor control that is even better than the AVC16 booster with wild type IL-21 and 4-1 BBL.
Figure 15 shows in vivo pharmakinetics for NK boosters AVC16 and AVC245 compared to control antibodies AVC137 and trastuzumab. Mice were injected i.v. with 1 mg/kg body weight of the boosters or antibodies. Blood sample for analysis were drawn 15 minutes, 2 hours and 1 , 3 and 7 days after injection and levels of boosters and control antibodies in mouse serum was determined by ELISA. As can be seen in Figure 15, after an initial drop in the first 15 minutes serum levels stabilize for the remainder of the 7-day test period. There is no significant difference between any of the tested boosters and antibodies in this time-frame.
Figure 16 shows that the in vivo efficacy of the AVC245 booster in reducing tumor burden in a mouse xenograft model (see Example 1.1.15) is significantly greater than that of control antibody AVC137 lacking the 4-1 BBL and IL-21 muteins. Table 1.2.5 confirms the statistical significance of the AVC245’s efficacy in reducing tumor burden over the control antibody AVC137, as well as the tumor-only and NK cells + tumor controls.
Table 1 .2.5. 2-way ANOVA + Tukey’s multiple comparisons test.
Figure 17 shows that the in vivo efficacy of the AVC245 booster in inducing expansion of donor NK cells in a mouse xenograft model (see Example 1 .1.15) is significantly greater than that of control antibody AVC137 lacking the 4-1 BBL and IL-21 muteins. Hence, Figures 16 and 17 convincingly demonstrate the therapeutic efficacy of conjugates comprising an antigen-binding protein against a TAA and a combination of 4-1 BBL and IL-21 muteins as described herein, in treating a tumor expressing the TAA.
Claims
1 . A conjugate comprising: a) an antigen-binding protein comprising at least one antigen-binding region that specifically binds TROP2; b) a mutein of a 4-1 BB ligand (4-1 BBL) extracellular domain (ECD), wherein the 4-1 BBL ECD mutein exhibits a binding affinity for human 4-1 BB, expressed as pKo, that is at least 1 .0 lower than the pKo of a wild-type 4-1 BBL ECD for human 4-1 BB, wherein the 4-1 BBL ECD mutein, when present as part of a homotrimer of the 4-1 BBL ECD mutein in a conjugate with an antibody that specifically binds a tumor-associated antigen (TAA), which conjugate further comprises a human IL-21 , induces a maximal proliferation of NK cells at a saturating concentration of 25 nM of the conjugate in a normalized 5-day NK cell proliferation assay in the presence of tumor cells expressing the TAA, which proliferation is not less than 50% of the proliferation induced by a corresponding control conjugate comprising a trimer of wild type 4-1 BBL ECD in the same assay; and, c) an IL-21 mutein that binds to a human IL-21 receptor (IL-21 R) with a reduced affinity, relative to the affinity of wild-type IL-21 for the human IL-21 R, wherein the IL-21 mutein, when present in a conjugate with an antibody that specifically binds a tumor-associated antigen (TAA), which conjugate further comprises a trimer of the wild type 4-1 BB ligand extracellular domain (4-1 BBL ECD), has an EC50 for induction of proliferation of NK cells in a normalized 5-day NK cell proliferation assay in the presence of tumor cells expressing the TAA, that is not is more than a factor 5 higher than the EC50 of a corresponding control conjugate comprising wild-type IL-21 in the same assay.
2. A conjugate according to claim 1 , wherein the antigen-binding region that specifically binds TROP2, comprises a combination of complementarity-determining regions (CDRs) CDR-H1 , CDR-H2, CDR-H3, CDR-L1 , CDR-L2 and CDR-L3 selected from the group consisting of: a) a CDR-H1 comprising the sequence of SEQ ID NO: 552, a CDR-H2 comprising the sequence of SEQ ID NO: 553, a CDR-H3 comprising the sequence of SEQ ID NO: 554, a CDR-L1 comprising the sequence of SEQ ID NO: 555, a CDR-L2 comprising the sequence of SEQ ID NO: 556, and a CDR-L3 comprising the sequence of SEQ ID NO: 557 (sacituzumab); b) a CDR-H1 comprising the sequence of SEQ ID NO: 558, a CDR-H2 comprising the sequence of SEQ ID NO: 559, a CDR-H3 comprising the sequence of SEQ ID NO: 560, a CDR-L1 comprising the sequence of SEQ ID NO: 561 , a CDR-L2 comprising the sequence of SEQ ID NO: 562, and a CDR-L3 comprising the sequence of SEQ ID NO: 563 (datopotamab); c) a CDR-H1 comprising the sequence of SEQ ID NO: 564, a CDR-H2 comprising the sequence of SEQ ID NO: 565, a CDR-H3 comprising the sequence of SEQ ID NO: 566, a CDR-L1 comprising the sequence of SEQ ID NO: 567, a CDR-L2 comprising the
sequence of SEQ ID NO: 568, and a CDR-L3 comprising the sequence of SEQ ID NO: 569 (KM4097); d) a CDR-H1 comprising the sequence of SEQ ID NO: 570, a CDR-H2 comprising the sequence of SEQ ID NO: 571 , a CDR-H3 comprising the sequence of SEQ ID NO: 572, a CDR-L1 comprising the sequence of SEQ ID NO: 573, a CDR-L2 comprising the sequence of SEQ ID NO: 574, and a CDR-L3 comprising the sequence of SEQ ID NO: 575 (AR47A6.4.2); and, e) a CDR-H1 comprising the sequence of SEQ ID NO: 576, a CDR-H2 comprising the sequence of SEQ ID NO: 577, a CDR-H3 comprising the sequence of SEQ ID NO: 578, a CDR-L1 comprising the sequence of SEQ ID NO: 579, a CDR-L2 comprising the sequence of SEQ ID NO: 580, and a CDR-L3 comprising the sequence of SEQ ID NO: 581 (K5-70).
3. A conjugate according to claim 1 or 2, wherein the antigen-binding region that specifically binds TROP2, comprises a combination of variable heavy (VH) and variable light (VL) domains selected from the group consisting of: a) the VH sequence as comprised in SEQ ID NO: 138 and the VL sequence as comprised in SEQ ID NO: 139 (sacituzumab); b) the VH sequence as comprised in SEQ ID NO: 338, and the VL sequence as comprised in SEQ ID NO: 339 (datopotamab); c) the VH sequence as comprised in SEQ ID NO: 540, and the VL sequence as comprised in SEQ ID NO: 541 (AR46A6); d) the VH sequence as comprised in SEQ ID NO: 542, and the VL sequence as comprised in SEQ ID NO: 543 (KM4097); and, e) the VH sequence as comprised in SEQ ID NO: 544, and the VL sequence as comprised in SEQ ID NO: 545 (K5-70).
4. A conjugate according to any one of the preceding claims, wherein at least one of: a) the amino acid sequence of the 4-1 BBL ECD mutein differs from a wild type human 4- 1 BBL ECD amino acid sequence of SEQ ID NO: 37 in that the 4-1 BBL ECD mutein comprises at least one substitution selected from the group consisting of: A154D, A154E, a combination of A154D and G155Q, V153Q, Q227E, L101 N, Y110Q, Q230K, and V100Q; and, b) the amino acid sequence of the IL-21 muteins differs from a wild type human IL-21 amino acid sequence of SEQ ID NO: 38 in that the IL-21 mutein comprises at least one amino acid substitution or deletion selected from the group consisting of: (N82- A83- G84- R85- R86- Q87- K88-), L20W; L74D; L20N; I67N; L20S; L13E; I8H; (N63- E64- R65- I66- ); and L74F.
5. A conjugate according to any one of the preceding claims, wherein the 4-1 BBL ECD mutein is present as part of a fusion protein comprising three 4-1 BBL ECD monomers, wherein one, two or three of the monomers is a 4-1 BBL ECD mutein according to claim 1 or 4, wherein the three 4-1 BBL ECD monomers are fused together in a single polypeptide chain, and wherein, optionally, the three 4-1 BBL ECD monomers are connected by polypeptide linkers.
6. A conjugate according to claim 5, wherein the fusion protein comprises three identical 4- 1 BBL ECD monomers according to claim 1 or 4, and wherein preferably, the three 4-1 BBL ECD monomers are connected by (GGGGS)4 polypeptide linkers.
7. A conjugate according to any one of the preceding claims, wherein the conjugate comprises a combination of a 4-1 BBL ECD mutein and an IL-21 mutein selected from the group consisting of: 4-1 BBL mutein A154D and IL-21 mutein (N82- A83- G84- R85- R86- Q87- K88- ); 4-1 BBL mutein A154D and IL-21 mutein L20W; 4-1 BBL mutein A154D and IL-21 mutein L74D; 4-1 BBL mutein A154D and IL-21 mutein L20N; 4-1 BBL mutein A154D and IL-21 mutein I67N; 4-1 BBL mutein A154D and IL-21 mutein L20S; 4-1 BBL mutein A154D and IL- 21 mutein L13E; 4-1 BBL mutein A154D and IL-21 mutein I8H; 4-1 BBL mutein A154D and IL- 21 mutein (N63- E64- R65- I66-); 4-1 BBL mutein A154D and IL-21 mutein L74F; 4-1 BBL mutein A154E and IL-21 mutein (N82- A83- G84- R85- R86- Q87- K88-); 4-1 BBL mutein A154E and IL-21 mutein L20W; 4-1 BBL mutein A154E and IL-21 mutein L74D; 4-1 BBL mutein A154E and IL-21 mutein L20N; 4-1 BBL mutein A154E and IL-21 mutein I67N; 4-1 BBL mutein A154E and IL-21 mutein L20S; 4-1 BBL mutein A154E and IL-21 mutein L13E; 4- 1 BBL mutein A154E and IL-21 mutein I8H; 4-1 BBL mutein A154E and IL-21 mutein (N63- E64- R65- I66-); 4-1 BBL mutein A154E and IL-21 mutein L74F; 4-1 BBL mutein A154D + G155Q and IL-21 mutein (N82- A83- G84- R85- R86- Q87- K88-); 4-1 BBL mutein A154D + G155Q and IL-21 mutein L20W; 4-1 BBL mutein A154D + G155Q and IL-21 mutein L74D; 4- 1 BBL mutein A154D + G155Q and IL-21 mutein L20N; 4-1 BBL mutein A154D + G155Q and IL-21 mutein I67N; 4-1 BBL mutein A154D + G155Q and IL-21 mutein L20S; 4-1 BBL mutein A154D + G155Q and IL-21 mutein L13E; 4-1 BBL mutein A154D + G155Q and IL-21 mutein I8H; 4-1 BBL mutein A154D + G155Q and IL-21 mutein (N63- E64- R65- 166-); 4-1 BBL mutein A154D + G155Q and IL-21 mutein L74F; 4-1 BBL mutein V153Q and IL-21 mutein (N82- A83- G84- R85- R86- Q87- K88-); 4-1 BBL mutein V153Q and IL-21 mutein L20W; 4-1 BBL mutein V153Q and IL-21 mutein L74D; 4-1 BBL mutein V153Q and IL-21 mutein L20N; 4-1 BBL mutein V153Q and IL-21 mutein I67N; 4-1 BBL mutein V153Q and IL-21 mutein L20S; 4- 1 BBL mutein V153Q and IL-21 mutein L13E; 4-1 BBL mutein V153Q and IL-21 mutein I8H; 4-1 BBL mutein V153Q and IL-21 mutein (N63- E64- R65- I66-); 4-1 BBL mutein V153Q and IL-21 mutein L74F; 4-1 BBL mutein Q227E and IL-21 mutein (N82- A83- G84- R85- R86- Q87- K88-); 4-1 BBL mutein Q227E and IL-21 mutein L20W; 4-1 BBL mutein Q227E and IL- 21 mutein L74D; 4-1 BBL mutein Q227E and IL-21 mutein L20N; 4-1 BBL mutein Q227E and IL-21 mutein I67N; 4-1 BBL mutein Q227E and IL-21 mutein L20S; 4-1 BBL mutein Q227E
and IL-21 mutein L13E; 4-1 BBL mutein Q227E and IL-21 mutein I8H; 4-1 BBL mutein Q227E and IL-21 mutein (N63- E64- R65- I66-); 4-1 BBL mutein Q227E and IL-21 mutein L74F; 4- 1 BBL mutein L101 N and IL-21 mutein (N82- A83- G84- R85- R86- Q87- K88-); 4-1 BBL mutein L101 N and IL-21 mutein L20W; 4-1 BBL mutein L101 N and IL-21 mutein L74D; 4- 1 BBL mutein L101 N and IL-21 mutein L20N; 4-1 BBL mutein L101 N and IL-21 mutein I67N; 4-1 BBL mutein L101 N and IL-21 mutein L20S; 4-1 BBL mutein L101 N and IL-21 mutein L13E; 4-1 BBL mutein L101 N and IL-21 mutein I8H; 4-1 BBL mutein L101 N and IL-21 mutein (N63- E64- R65- I66-); 4-1 BBL mutein L101 N and IL-21 mutein L74F; 4-1 BBL mutein Y1 10Q and IL-21 mutein (N82- A83- G84- R85- R86- Q87- K88-); 4-1 BBL mutein Y110Q and IL-21 mutein L20W; 4-1 BBL mutein Y110Q and IL-21 mutein L74D; 4-1 BBL mutein Y110Q and IL- 21 mutein L20N; 4-1 BBL mutein Y110Q and IL-21 mutein I67N; 4-1 BBL mutein Y110Q and IL-21 mutein L20S; 4-1 BBL mutein Y110Q and IL-21 mutein L13E; 4-1 BBL mutein Y110Q and IL-21 mutein I8H; 4-1 BBL mutein Y110Q and IL-21 mutein (N63- E64- R65- I66-); 4- 1 BBL mutein Y110Q and IL-21 mutein L74F; 4-1 BBL mutein Q230K and IL-21 mutein (N82- A83- G84- R85- R86- Q87- K88-); 4-1 BBL mutein Q230K and IL-21 mutein L20W; 4-1 BBL mutein Q230K and IL-21 mutein L74D; 4-1 BBL mutein Q230K and IL-21 mutein L20N; 4- 1 BBL mutein Q230K and IL-21 mutein I67N; 4-1 BBL mutein Q230K and IL-21 mutein L20S; 4-1 BBL mutein Q230K and IL-21 mutein L13E; 4-1 BBL mutein Q230K and IL-21 mutein I8H; 4-1 BBL mutein Q230K and IL-21 mutein (N63- E64- R65- I66-); 4-1 BBL mutein Q230K and IL-21 mutein L74F; 4-1 BBL mutein V100Q and IL-21 mutein (N82- A83- G84- R85- R86- Q87- K88-); 4-1 BBL mutein V100Q and IL-21 mutein L20W; 4-1 BBL mutein V100Q and IL- 21 mutein L74D; 4-1 BBL mutein V100Q and IL-21 mutein L20N; 4-1 BBL mutein V100Q and IL-21 mutein I67N; 4-1 BBL mutein V100Q and IL-21 mutein L20S; 4-1 BBL mutein V100Q and IL-21 mutein L13E; 4-1 BBL mutein V100Q and IL-21 mutein I8H; 4-1 BBL mutein V100Q and IL-21 mutein (N63- E64- R65- 166-); and, 4-1 BBL mutein V100Q and IL-21 mutein L74F.
8. A conjugate according to claim 7, wherein the conjugate comprises a combination of the 4- 1 BBL mutein A154D and the IL-21 mutein (N82- A83- G84- R85- R86- Q87- K88-); or the 4- 1 BBL mutein A154D and the IL-21 mutein L20W.
9. A conjugate according to any one of the preceding claims, wherein the conjugate comprises a) an antigen-binding protein comprising at least one antigen-binding region that specifically binds TROP2, wherein the antigen-binding region comprises a CDR-H1 comprising the sequence of SEQ ID NO: 552, a CDR-H2 comprising the sequence of SEQ ID NO: 553, a CDR-H3 comprising the sequence of SEQ ID NO: 554, a CDR-L1 comprising the sequence of SEQ ID NO: 555, a CDR-L2 comprising the sequence of SEQ ID NO: 556, and a CDR-L3 comprising the sequence of SEQ ID NO: 557 (sacituzumab); b) a 4-1 BBL ECD mutein, the amino acid sequence of which differs from a wild type human 4-1 BBL ECD amino acid sequence of SEQ ID NO: 37 in that the 4-1 BBL ECD mutein comprises the substitution A154D; and,
c) an IL-21 mutein, the amino acid sequence of the which differs from a wild type human IL-21 amino acid sequence of SEQ ID NO: 38 in that the IL-21 mutein comprises the deletion (N82- A83- G84- R85- R86- Q87- K88-).
10. A conjugate according to any one of the preceding claims, wherein the conjugate comprises a dimeric Fc region that binds to CD16A.
11. A conjugate according to any one of claims 1 - 10, wherein the at least one antigen-binding region that specifically binds TROP2 forms a dimeric immunoglobulin structure with the dimeric Fc region, and wherein at least one of the 4-1 BBL ECD mutein and the IL-21 mutein, is present on at least one or on both sides of the dimeric immunoglobulin structure.
12. A pharmaceutical composition comprising a conjugate according to any one of claims 1 - 11 , and a pharmaceutically acceptable carrier.
13. A conjugate according to any one of claims 1 - 11 , or a composition according to claim 12, for use in the treatment of a cancer, , wherein optionally, the conjugate or the composition is used in combination with an adoptive transfer of immune cells, wherein preferably the immune cells are selected from T cells and NK cells.
14. A conjugate according to any one of claims 1 - 11 , or a composition according to claim 12, for a use according to claim 13, wherein the cancer is a cancer comprising tumor cells expressing TROP2.
15. A conjugate according to any one of claims 1 - 11 or a composition according to claim 12, for a use according to claim 13 or 14, wherein at least one of: a) the conjugate or the composition is administered as a neoadjuvant therapy before a primary therapy comprising at least one of surgery and radiation therapy of the cancer; and, b) the conjugate or the composition is administered as an adjuvant therapy after a primary therapy comprising at least one of surgery and radiation therapy of the cancer.
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| EP24163866.7 | 2024-03-15 | ||
| EP24163866 | 2024-03-15 |
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| Publication Number | Publication Date |
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| WO2025191137A1 true WO2025191137A1 (en) | 2025-09-18 |
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| PCT/EP2025/057036 Pending WO2025191137A1 (en) | 2024-03-15 | 2025-03-14 | Conjugates of trop2-specific antigen binding proteins and cytokines |
| PCT/EP2025/057039 Pending WO2025191139A1 (en) | 2024-03-15 | 2025-03-14 | Conjugates of her2-specific antigen binding proteins and cytokines |
| PCT/EP2025/057051 Pending WO2025191144A1 (en) | 2024-03-15 | 2025-03-14 | Conjugates of egfr-specific antigen binding proteins and cytokines |
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| PCT/EP2025/057051 Pending WO2025191144A1 (en) | 2024-03-15 | 2025-03-14 | Conjugates of egfr-specific antigen binding proteins and cytokines |
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