WO2025057225A1 - Engineered antibodies and uses thereof - Google Patents
Engineered antibodies and uses thereof Download PDFInfo
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- WO2025057225A1 WO2025057225A1 PCT/IN2024/051736 IN2024051736W WO2025057225A1 WO 2025057225 A1 WO2025057225 A1 WO 2025057225A1 IN 2024051736 W IN2024051736 W IN 2024051736W WO 2025057225 A1 WO2025057225 A1 WO 2025057225A1
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- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K16/00—Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies
- C07K16/18—Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies against material from animals or humans
- C07K16/28—Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies against material from animals or humans against receptors, cell surface antigens or cell surface determinants
- C07K16/2803—Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies against material from animals or humans against receptors, cell surface antigens or cell surface determinants against the immunoglobulin superfamily
- C07K16/2812—Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies against material from animals or humans against receptors, cell surface antigens or cell surface determinants against the immunoglobulin superfamily against CD4
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- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K16/00—Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies
- C07K16/18—Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies against material from animals or humans
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K16/00—Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies
- C07K16/18—Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies against material from animals or humans
- C07K16/28—Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies against material from animals or humans against receptors, cell surface antigens or cell surface determinants
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K16/00—Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies
- C07K16/18—Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies against material from animals or humans
- C07K16/28—Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies against material from animals or humans against receptors, cell surface antigens or cell surface determinants
- C07K16/2866—Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies against material from animals or humans against receptors, cell surface antigens or cell surface determinants against receptors for cytokines, lymphokines, interferons
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K16/00—Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies
- C07K16/40—Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies against enzymes
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- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K16/00—Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies
- C07K16/46—Hybrid immunoglobulins
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K2317/00—Immunoglobulins specific features
- C07K2317/50—Immunoglobulins specific features characterized by immunoglobulin fragments
- C07K2317/52—Constant or Fc region; Isotype
- C07K2317/524—CH2 domain
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- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K2317/00—Immunoglobulins specific features
- C07K2317/90—Immunoglobulins specific features characterized by (pharmaco)kinetic aspects or by stability of the immunoglobulin
- C07K2317/94—Stability, e.g. half-life, pH, temperature or enzyme-resistance
Definitions
- antibody sensitivity i.e., the strength of the signal produced in a particular immunoassay.
- a highly sensitive antibody has several advantages such as the detection of low abundance or rare targets and the ability to detect the target protein in difficult imaging assays.
- Antibody sensitivity can be increased by affinity maturation of the antibody clone, which involves mutation of the antigen binding site or paratope.
- affinity maturation has to be tailored for each antibody under consideration and is therefore not a scalable solution to address a large number of antibodies.
- introduction of mutations to the paratope changes the clone of the antibody and Attorney Docket No. TP385350WO1 essentially produces a new antibody.
- isolated polypeptides comprising the amino acid sequence of Formula I: Z-(X-Yn-Zr)p-X, wherein Z is a hinge region, X is a CH2 domain, Y is a linker, n is an integer of 1 or greater, p is an integer of 2 or greater, and r is an integer of 0 or 1.
- the isolated polypeptides have at least a 1.5-fold increase in signal enhancement or sensitivity.
- the isolated polypeptides have at least a 1.5-fold reduction in background signal.
- Disclosed herein are antibodies comprising a polypeptide comprising the amino acid sequence of Formula I: Z-(X-Y n -Z r ) p -X, wherein Z is a hinge region, X is a CH2 domain, Y is a linker, n is an integer of 1 or greater, p is an integer of 2 or greater, and r is an integer of 0 or 1 linked to a Fab domain.
- the antibodies have at least a 1.5-fold increase in signal enhancement or sensitivity compared to a corresponding wild type antibody.
- the antibodies have at least a 1.5-fold reduction in background signal compared to a corresponding wild type antibody.
- the antibodies comprise a heavy chain (HC) and a light chain (LC) that pair to form a binding domain comprising a heavy chain complementarity determining region 1 (HCDR1) comprising the amino acid sequence of SEQ ID NO: 4, a HCDR2 comprising the amino acid sequence of SEQ ID NO: 5, a HCDR3 comprising the amino acid sequence of SEQ ID NO: 6, a light chain complementarity determining region 1 (LCDR1) comprising the amino acid sequence of SEQ ID NO: 13, a LCDR2 comprising the amino acid sequence RAS, and a LCDR3 comprising the amino acid sequence of SEQ ID NO: 15, and wherein the heavy chain further comprises a first CH2 domain, a second CH2 domain, and a third CH2 domain, wherein the first CH2 domain and the second CH2 domain are connected by
- HCDR1 heavy chain complementarity determining region 1
- LCDR3 light chain complementarity determining region 1
- the heavy chain further comprises a first CH2 domain, a second CH2 domain, and a third CH2 domain, wherein the first CH2 domain and the second CH2 domain are connected by a first linker and an optional first hinge, and wherein the
- antibodies that immunospecifically bind to IDO1 wherein the antibodies comprise a heavy chain (HC) and a light chain (LC) that pair to form a binding domain comprising a heavy chain complementarity determining region 1 (HCDR1) comprising the amino acid sequence of SEQ ID NO: 66, a HCDR2 comprising the amino acid sequence of SEQ ID NO: 67, and a HCDR3 comprising the amino acid sequence of SEQ ID NO: 68, a light chain complementarity determining region 1 (LCDR1) comprising the amino acid sequence of SEQ ID NO: 72, a LCDR2 comprising the amino acid sequence of YAS, and a LCDR3 comprising the amino acid sequence of SEQ ID NO: 73, and wherein the heavy chain further comprises a first CH2 domain, a second CH2 domain, and a third CH2 domain, wherein the first CH2 domain and the second CH2 domain are connected by a first linker and an optional first hinge, and wherein the second CH2 domain
- antibodies that immunospecifically bind to FLAG-tag, wherein the antibodies comprise a heavy chain (HC) and a light chain (LC) that pair to form a binding domain comprising a heavy chain complementarity determining region 1 (HCDR1) comprising the amino acid sequence of SEQ ID NO: 163, a HCDR2 comprising the amino acid sequence of SEQ ID NO: 164, and a HCDR3 comprising the amino acid sequence of SEQ ID NO: 165, a light chain complementarity determining region 1 (LCDR1) comprising Attorney Docket No.
- TP385350WO1 the amino acid sequence of SEQ ID NO: 168, a LCDR2 comprising the amino acid sequence of YAS, and a LCDR3 comprising the amino acid sequence of SEQ ID NO: 169, and wherein the heavy chain further comprises a first CH2 domain, a second CH2 domain, and a third CH2 domain, wherein the first CH2 domain and the second CH2 domain are connected by a first linker and an optional first hinge, and wherein the second CH2 domain and the third CH2 domain are connected by a second linker and an optional second hinge, and wherein the heavy chain further comprises a CH3 domain.
- antibodies that immunospecifically bind to pERK1/2 wherein the antibodies comprise a heavy chain (HC) and a light chain (LC) that pair to form a binding domain comprising a heavy chain complementarity determining region 1 (HCDR1) comprising the amino acid sequence of SEQ ID NO: 85, a HCDR2 comprising the amino acid sequence of SEQ ID NO: 86, and a HCDR3 comprising the amino acid sequence of SEQ ID NO: 87, a light chain complementarity determining region 1 (LCDR1) comprising the amino acid sequence of SEQ ID NO: 91, a LCDR2 comprising the amino acid sequence of KVS, and a LCDR3 comprising the amino acid sequence of SEQ ID NO: 92, and wherein the heavy chain further comprises a first CH2 domain, a second CH2 domain, and a third CH2 domain, wherein the first CH2 domain and the second CH2 domain are connected by a first linker and an optional first hinge, and wherein the second CH
- TP385350WO1 domain are connected by a second linker and an optional second hinge, and wherein the heavy chain further comprises a CH3 domain.
- the antibodies comprise a heavy chain (HC) and a light chain (LC) that pair to form a binding domain comprising a heavy chain complementarity determining region 1 (HCDR1) comprising the amino acid sequence of SEQ ID NO: 111, a HCDR2 comprising the amino acid sequence of SEQ ID NO: 112, and a HCDR3 comprising the amino acid sequence of SEQ ID NO: 113, a light chain complementarity determining region 1 (LCDR1) comprising the amino acid sequence of SEQ ID NO: 116, a LCDR2 comprising the amino acid sequence of DTS, and a LCDR3 comprising the amino acid sequence of SEQ ID NO: 117, and wherein the heavy chain further comprises a first CH2 domain, a second CH2 domain, and a third CH2 domain
- antibodies that immunospecifically bind to TIGIT wherein the antibodies comprise a heavy chain (HC) and a light chain (LC) that pair to form a binding domain comprising a heavy chain complementarity determining region 1 (HCDR1) comprising the amino acid sequence of SEQ ID NO: 146, a HCDR2 comprising the amino acid sequence of SEQ ID NO: 147, and a HCDR3 comprising the amino acid sequence of SEQ ID NO: 148, a light chain complementarity determining region 1 (LCDR1) comprising the amino acid sequence of SEQ ID NO: 151, a LCDR2 comprising the amino acid sequence of SAS, and a LCDR3 comprising the amino acid sequence of SEQ ID NO: 152, and wherein the heavy chain further comprises a first CH2 domain, a second CH2 domain, and a third CH2 domain, wherein the first CH2 domain and the second CH2 domain are connected by a first linker and an optional first hinge, and wherein the second CH2 domain
- Disclosed herein are methods of detecting the presence of a target protein in a sample comprising applying the herein disclosed isolated polypeptides or the herein disclosed antibodies to a sample containing a target protein, incubating the isolated polypeptide or the antibody in the sample under conditions permitting the isolated Attorney Docket No. TP385350WO1 polypeptides or the polypeptide or the antibody to bind to the target protein and to form a bound isolated polypeptide or a bound polypeptide or the antibody, and determining the presence of the bound isolated polypeptide or the bound polypeptide or the antibody, thereby detecting the presence of the target protein.
- a polypeptide comprising the amino acid sequence of Formula I: Z-(X-Y n -Z r ) p -X, wherein Z is a hinge, X is a CH2 domain, Y is a linker, n is an integer of 1 or greater, p is an integer of 2 or greater, and r is an integer of 0 or 1, wherein the sensitivity of the antibody is increased at least 1.5-fold compared to a corresponding wild type antibody.
- the method further comprises introducing LFLEPS mutations into the amino acid sequence of X, wherein the LFLEPS mutations comprise L234F, L235E and P331S substitutions.
- LFLEPS mutations comprise L234F, L235E and P331S substitutions.
- Disclosed herein are methods of reducing the background signal of an antibody, comprising introducing into a heavy chain of the antibody a polypeptide comprising the amino acid sequence of Formula I: Z-(X-Yn-Zr)p-X, wherein Z is a hinge, X is a CH2 domain, Y is a linker, n is an integer of 1 or greater, p is an integer of 2 or greater, and r is an integer of 0 or 1, wherein the background signal of the antibody is reduced at least 1.5- fold compared to a corresponding wild type antibody.
- the method further comprises introducing LFLEPS mutations into the amino acid sequence of X, wherein the LFLEPS mutations comprise L234F, L235E and P331S substitutions.
- FIG.1A is a schematic diagram of Parent wild type antibody (WT IgG, ⁇ 150 kDa)
- FIG.1B is a schematic diagram of the 1TdFc design (IgG-2Fc, ⁇ 200 kDa). The 1TdFc design has one additional Fc domain connected by a linker and hinge.
- FIG.1C is a schematic diagram of the 2TdFc design (IgG-3Fc, ⁇ 250 kDa). The 2TdFc design has two additional Fc domains connected by a linker and hinge. Attorney Docket No.
- FIG.1D is a schematic diagram of the 2TdCH2 design ( ⁇ 200 kDa).
- the 2TdCH2 design has two additional CH2 domains connected by linker and optional hinge.
- FIG.1E is a schematic diagram of the 2TdCH2-LFLEPS design ( ⁇ 200 kDa).
- the 2TdCH2-LFLEPS design has two additional CH2 domains connected by a linker and optional hinge, and FcR mutations (stars) represented by the acronym “LFLEPS”.
- FIG.2A is a plasmid map showing that the polynucleotide sequence of the anti-OCT4 antibody heavy chain (HC) with the 2TdCH2-LFLEPS configuration was synthesized and cloned between XbaI-NotI restriction sites in pcDNA3.4 Vector. XbaI-KasI restriction enzyme can be used for subcloning of another target HC “Fab” region.
- FIG.2B is a plasmid map showing that the polynucleotide sequence of the anti-OCT4 antibody light chain (LC) was synthesized and cloned between XbaI-NotI restriction sites in pcDNA3.4 Vector.
- FIG.2C shows a restriction digestion analysis of the anti-OCT4 antibody HC with the 2TdCH2-LFLEPS configuration and anti-OCT4 antibody LC.
- Anti-OCT4 antibody HC 2TdCH2-LFLEPS shows a 2203 bp insert released upon XbaI-NotI digestion.
- Anti-OCT4 antibody LC shows a 746 bp insert released upon XbaI-NotI digestion.
- FIG.3A is a plasmid map showing that the polynucleotide sequence of the anti-Parkin antibody heavy chain (HC) with 2TdCH2-LFLEPS configuration was synthesized and cloned between XbaI-NotI restriction sites in pcDNA3.4 Vector. XbaI-KasI restriction enzyme can be used for subcloning of another target HC “Fab” region.
- FIG.3B is a plasmid map showing that the polynucleotide sequence of the anti-Parkin antibody light chain (LC) was synthesized and cloned between XbaI-NotI restriction sites in pcDNA3.4 Vector.
- FIG.3C shows a restriction digestion analysis of anti-Parkin antibody HC with the 2TdCH2-LFLEPS configuration and anti-Parkin antibody LC.
- Anti-Parkin antibody HC 2TdCH2-LFLEPS shows a 2218 bp insert released upon XbaI-NotI digestion.
- Anti- Parkin antibody LC shows a 743 bp insert released upon XbaI-NotI digestion.
- FIG.4A shows a representative HPLC profile of parent anti-Parkin wild type (WT) antibody having purity of 95% monomer. Attorney Docket No.
- FIG.4B shows a representative HPLC profile of anti-OCT41TdFc antibody having purity of 63% monomer.
- FIG.4C shows a representative HPLC profile of anti-Parkin 2TdFc antibody having purity of 33% monomer.
- FIG.4D shows a representative HPLC profile of anti-Parkin 2TdCH2- LFLEPS antibody having purity of 87% monomer.
- FIG.5A is a western blot (WB) analysis performed on whole cell extracts of rat brain tissue (left panel) and PC-12 cells (right panel).
- FIG.5B is a western blot (top panel) showing how antibody specificity was demonstrated by siRNA-mediated knockdown of the target protein.
- SH-SY5Y cells were transfected with Parkin siRNA and a decrease in signal intensity was observed in western blot application using anti-Parkin 2TdCH2-LFLEPS antibody.
- the bottom panel is a graphical representation of the western blot analysis.
- FIG.6A is a western blot analysis that was performed on whole cell extracts of NTERA-2 (left panel) and F9 cells (right panel). The blots were probed with wild type (WT) and engineered anti-OCT4 antibodies (1TdFC, 2TdFc, 2TdCH2). A ⁇ 38 kDa band corresponding to OCT4 was observed in the cell lysates tested.
- FIG.6B is a western blot analysis performed on whole cell extracts of NTERA-2 cells. The blots were probed with wild type (WT) and engineered anti-OCT4 antibodies (2TdCH2, 2TdCH2-LFLEPS).
- FIG.6C shows antibody specificity was demonstrated by relative expression (top panel) with BOI in NTERA-2, NCCIT and F9 cells.
- HEK293, A431 and HELA were Attorney Docket No. TP385350WO1 negative cell lines.
- NTERA-2 cells were transfected with OCT4 siRNA and a decrease in signal intensity was observed in western blot application using anti-OCT42TdCH2-LFLEPS antibody.
- FIG.8A is an immunofluorescent analysis of OCT4 performed using 70% confluent NTERA-2 cells. The cells were stained with different concentrations of anti-OCT4 wild type (WT) antibody (upper panel) or anti-OCT42TdCH2-LFLEPS antibody (1:1,000) (lower panel).
- FIG.8B shows a knockdown of OCT4 was achieved by transfecting NTERA-2 cells with specific validated siRNA (Silencer® select Product # s10871, s10873).
- FIG.9A is an immunohistochemical analysis of Parkin performed using formalin-fixed paraffin-embedded mouse kidney tissue sections. The sections were probed with anti-Parkin wild type (WT) (lower panel) or anti-Parkin 2TdCH2-LFLEPS (upper panel) (1:100 dilution) antibody.
- FIG.9B is an immunohistochemical analysis of Parkin performed using formalin-fixed paraffin-embedded mouse kidney tissue sections.
- FIG.10 is a flow cytometry analysis of Parkin performed in PC-12 cells. Cells were fixed and permeabilized using the Intracellular Fixation & Permeabilization Attorney Docket No. TP385350WO1 Buffer Set (Product # 88-8824-00) and then stained intracellularly with 2 ⁇ g of anti-Parkin wild type (WT) antibody or anti-Parkin 2TdCH2-LFLEPS antibody or positive control (PC) antibody (PA5-1339) antibody. Unstained samples were used as a control.
- FIG.11 is a graphical representation of an immunofluorescent analysis of IDO1 that was performed using 70% confluent CD64-GFP (Fc ⁇ R1) transfected HEK-293E cells demonstrating the amount of Fc ⁇ R1 binding by the antibodies.
- the cells were stained with 0.5 ⁇ g/ml and 2.5 ⁇ g/ml of IDO1 wild type (WT) ⁇ LFLEPS antibody or anti-IDO1 2TdCH2 ⁇ LFLEPS antibody followed by Goat anti-Rabbit Alexa FluorTM 647 secondary antibody (Product #A21244).
- FIG.12A is a flow cytometry analysis of IDO1 that was performed using 70% confluent CD64-GFP (Fc ⁇ R1) transfected HEK-293E cells. The cells were stained with 0.5 ⁇ g/ml (lower panel) and 2.5 ⁇ g/ml (upper panel) with anti-IDO1 wild type ⁇ LFLEPS (WT) antibody or anti-IDO12TdCH2 ⁇ LFLEPS antibody followed by Goat anti-Rabbit Alexa FluorTM 647 secondary antibody (Product #A21244) Viable cells were used for analysis and data was acquired using AttuneTM NxT Flow Cytometer (Product # A29004).
- WT anti-IDO1 wild type ⁇ LFLEPS
- WTdCH2 anti-IDO12TdCH2 ⁇ LFLEPS antibody
- Goat anti-Rabbit Alexa FluorTM 647 secondary antibody Goat anti-Rabbit Alexa FluorTM 647 secondary antibody
- FIG.12B is a graphical representation of the flow cytometry analysis shown in FIG.12A demonstrating the amount of Fc ⁇ R1 binding by the antibodies.
- the asterisk (*) indicates statistical significance as determined by p ⁇ 0.05 using 2-tailed Student’s T test.
- FIG.13A is a graphical representation of an immunofluorescent analysis of IDO1 that was performed using 70% confluent CD64-GFP (Fc ⁇ R1) transfected HEK-293E cells with/without treatment of Interferon-gamma (INF ⁇ ).
- FIG.13B is a graphical representation of an immunofluorescent analysis of IDO1 that was performed using 70% confluent CD64-GFP (Fc ⁇ R1) transfected HEK-293E cells with/without treatment of INF ⁇ . The cells were stained with 0.5 ⁇ g/ml of anti-IDO1 Attorney Docket No.
- FIG.14A is a flow cytometry analysis demonstrating that the 2TdCH2- LFLEPS design in a mouse-rabbit chimeric antibody (Fab-Fc Chimera) enhances TIGIT signal detection in human PBMCs compared to wild type design.
- FIG.14B is a graphical representation of the flow cytometry analysis shown in FIG.14A showing the staining index of the various antibodies.
- FIG.15 is a graphical representation of an immunofluorescent analysis of the effect of the 2TdCH2 LFLEPS design on a rabbit anti-mouse (RAM) IgG secondary antibody and showing the staining index of the various antibodies. The analysis was performed using 70% confluent CD64-GFP (Fc ⁇ R1) transfected HEK-293E cells.
- the cells were stained with 0.5 ⁇ g/ml and 2.5 ⁇ g/ml of a RAM wild type (WT) antibody ⁇ LFLEPS or a RAM 2TdCH2-LFLEPS ⁇ LFLEPS antibody followed by Donkey anti-Rabbit Alexa FluorTM 647 secondary antibody d(A32795) to detect the RAM antibody.
- WT RAM wild type
- RAM 2TdCH2-LFLEPS RAM 2TdCH2-LFLEPS ⁇ LFLEPS antibody
- Donkey anti-Rabbit Alexa FluorTM 647 secondary antibody d(A32795) to detect the RAM antibody.
- Increased staining with the RAM WT antibody and the RAM 2TdCH2 antibody (without LFLEPS) indicates the non-specific binding of the secondary antibody as there is no primary antibody present in the sample.
- the asterisk (*) indicates statistical significance as determined by p ⁇ 0.05 using 2- tailed Student’s T test.
- FIG.16A shows a western blot (left panel) that was performed using 0.5 ⁇ g/ml of anti-pERK1/2 WT antibody and anti-pERK1/22TdCH2 recombinant mouse monoclonal antibody followed by Goat anti-Mouse IgG (H+L) Horseradish Peroxidase (HRP) SuperclonalTM secondary antibody (Product # A28177) by loading whole cell extracts of Jurkat cells with and without PMA treatment (200 ng/ml).
- the right panel shows a graphical representation of the western blot analysis.
- FIG.16B is an immunofluorescent analysis was performed using 2.5 ⁇ g/ml of anti-pERK1/2 WT antibody and anti-pERK1/22TdCH2 recombinant mouse monoclonal antibody followed by Goat anti-Mouse IgG (H+L) Alexa FluorTM Plus 488 secondary antibody in serum starved A431 cells with EGF treatment (200 ng/ml).
- the left panel shows the immunofluorescence images and the right panel shows a graphical representation of the immunofluorescent analysis.
- FIG.17 shows a western blot that was performed using 4.0 to 0.5 ⁇ g/ml of anti-PSD-95 WT antibody and anti-PSD-952TdCH2 antibody followed by Goat anti-Mouse IgG (H+L) HRP SuperclonalTM Secondary antibody (Product # A28177) by loading whole cell extracts of Neuro2A cells.
- FIG.18A is an immunofluorescent analysis that was performed using 1 ⁇ g/ml of wild type or 2TdCH2 LFLEPS anti-OCT4-Alexa FluorTM Plus 555 antibody conjugate in NTERA2 cells.
- FIG.18B is a graphical representation of the immunofluorescent analysis shown in FIG.18A.
- FIG.19A is an immunofluorescent analysis that was performed using 1 ⁇ g/ml of wild type or 2TdCH2 LFLEPS anti-OCT4-Alexa FluorTM Plus 647 conjugate in NTERA2 cells.
- FIG.19B is a graphical representation of the immunofluorescent analysis shown in FIG.19A.
- the asterisk (*) indicates statistical significance as determined by p ⁇ 0.05 using 2-tailed Student’s T test.
- FIG.20A is western blot analysis that was performed using 1 ⁇ g/ml of wild type or 2TdCH2 LFLEPS anti-Parkin HRP conjugate at 4 and 8 molar ratio in PC-12 cell whole cell lysate (WCL).
- FIG.20B is western blot analysis that was performed using 1 ⁇ g/ml of wild type or 2TdCH2 LFLEPS anti-FLAG-tag HRP conjugate at 4 and 8 molar ratio in EXPI293 cell transfected with FLAG-Histone H4 construct.
- FIG.20C is western blot analysis that was performed using 1 ⁇ g/ml of wild type or 2TdCH2 LFLEPS anti-FLAG-tag Biotin conjugate at 25 and 50 molar ratio in EXPI293 cell transfected with FLAG-Histone H4 construct.
- Attorney Docket No. TP385350WO1 [0067]
- FIG.21A indicates degree of labeling (DOL) from SiteClickTM conjugation of Alexa FluorTM 488 dyes with anti-Parkin WT, 2TdCH2 and 2TdCH2 LFLEPS antibodies.
- the asterisk (*) indicates statistical significance as determined by p ⁇ 0.05 and asterisk (**) indicates statistical significance as determined by p ⁇ 0.01 using 2-tailed Student’s T test.
- FIG.21B indicates degree of labeling (DOL) from SiteClickTM conjugation of Alexa FluorTM 488 dyes with anti-OCT4 WT, 2TdCH2 and 2TdCH2 LFLEPS antibodies.
- the asterisk (*) indicates statistical significance as determined by p ⁇ 0.05 using 2- tailed Student’s T test.
- DETAILED DESCRIPTION [0069] Various publications, articles and patents are cited or described in the background and throughout the specification; each of these references is herein incorporated by reference in its entirety. Discussion of documents, acts, materials, devices, articles or the like which has been included in the present specification is for the purpose of providing context for the invention.
- any description as to a possible mechanism or mode of action or reason for improvement is meant to be illustrative only, and the disclosed polypeptides, antibodies, and methods are not to be constrained by the correctness or incorrectness of any such suggested mechanism or mode of action or reason for improvement.
- the descriptions refer to polypeptides, antibodies, and methods of producing the polypeptides and antibodies. Where the disclosure describes or claims a feature or embodiment associated with polypeptides or antibodies, such a feature or embodiment is equally applicable to the methods of producing the polypeptides or antibodies.
- Antibody as used herein means an antibody of classes IgG, IgM, IgA, IgD, or IgE, or fragments, or derivatives thereof, derived from any animal including, but not limited to, sheep, rabbits, goats, mice, camelids, and egg yolk.
- Antibodies include but are not limited to monoclonal or polyclonal antibodies, bispecific antibodies, bifunctional antibodies, fragments of antibodies, humanized antibodies, chimeric antibodies, engineered antibodies, antibody constructs, and altered antibody-like structures.
- Engineered antibodies or antibody constructs include antibody-like structures having the herein described polypeptides comprising the amino acid sequence of Attorney Docket No.
- TP385350WO1 Formula I Z-(X-Yn-Zr)p-X, wherein Z is a hinge comprising an amino acid sequence at least 90% identical to SEQ ID NO: 18, SEQ ID NO: 48, or SEQ ID NO: 102, X is a CH2 domain comprising an amino acid sequence at least 90% identical to SEQ ID NO: 19, SEQ ID NO: 49, or SEQ ID NO: 104, Y is a linker, n is an integer of 1 or greater, p is an integer of 2 or greater, and r is an integer of 0 or 1. Antibodies may be produced or modified by recombinant DNA or other synthetic techniques.
- the antibody can be an antibody isolated from the serum sample of a mammal, an affinity purified antibody, or any mixture thereof which exhibits sufficient binding specificity to a desired epitope or a sequence derived therefrom. Also included are functional derivatives or “equivalents” of antibodies, e.g., single chain antibodies, CDR-grafted antibodies, etc. Also included are VHH antibodies that may be monovalent or bivalent.
- Biotin as used herein means biotin or any biotin derivative, including without limitation, substituted and unsubstituted biotin, and analogs and derivatives thereof, as well as substituted and unsubstituted derivatives of caproylamidobiotin, biocytin, desthiobiotin, desthiobiocytin, iminobiotin, and biotin sulfone.
- “Coding sequence” or “polynucleotide encoding” as used herein means RNA or DNA molecules that comprise a nucleotide sequence which encodes a protein.
- the coding sequence can further include initiation and termination signals operably linked to regulatory elements including a promoter and polyadenylation signal capable of directing expression in the cells of a subject or mammal to which the nucleic acid molecule is administered.
- initiation and termination signals operably linked to regulatory elements including a promoter and polyadenylation signal capable of directing expression in the cells of a subject or mammal to which the nucleic acid molecule is administered.
- the percentage can be calculated by optimally aligning the two sequences, comparing the two sequences over the specified region, determining the number of positions at which the identical residue occurs in both sequences to yield the number of matched positions, dividing the number of matched positions by the total number of positions in the specified region, and multiplying the result by 100 to yield the percentage of sequence identity.
- the residues of single sequence are included in the denominator but not the numerator of the calculation.
- Fluorophore as used herein means a chemical compound that, when excited by exposure to a particular wavelength of light, emits light (fluoresces), for example at a different wavelength than that to which it was exposed. Fluorophores may contain substituents that alter the solubility, spectral properties or physical properties of the fluorophore.
- Exemplary fluorophores include, but are not limited to, xanthene, fluorescein, rhodamine, silicon rhodamine, rhodol, roseamine, carbopyranone, indole, indacene, borapolyazaindacene, furan, benzofuran, cyanine, benzocyanine, benzopyrilium, pyrene, coumarin, styryl, squarine, resorufin, anthraquinone, acridine, benzophenoxazine, quinoline, quinazolinone, oligonucleotide-based fluorescent dyes, conjugated polymer dyes, and tandem dyes.
- fluorophores suitable for use with the disclosed assays include, but are not limited to, 6-carboxyfluorescein (FAM), tetrachlorofluorescein (TET), tetramethylrhodamine (TMR), hexachlorofluorescein (HEX), JOE, 6-carboxy-X-rhodamine (ROX), CAL Fluor TM , Pulsar TM , Quasar TM , Texas Red TM , Texas Red-X, Cy TM 3, Cy TM 5, BODIPY TM (boron-dipyrromethene), Alexa Fluor TM dyes (such as Alexa Fluor TM 488), Alexa Fluor Plus dyes (such as Alexa FluorTM Plus 488), DyLightTM dyes (such as DyLightTM 488), Oregon Green TM , and NovaFluorTM dyes (such as NovaFluorTM Red 710), as well as other fluorophores described in
- Label as used herein means an agent capable of detection, for example by ELISA, spectrophotometry, flow cytometry, or microscopy.
- a label can be attached (e.g., covalently linked or conjugated) to a nucleic acid molecule or protein (such as an antibody or antigen binding fragment thereof), thereby permitting detection of the nucleic acid molecule or protein.
- labels include, but are not limited to, radioactive isotopes, enzyme substrates, co-factors, ligands, chemiluminescent agents, fluorophores, Attorney Docket No. TP385350WO1 haptens, enzymes, and combinations thereof.
- Specific non-limiting examples of labels include fluorescent and fluorogenic moieties (e.g., fluorophores).
- Illustrative labels include labels that can be directly observed or measured or indirectly observed or measured.
- Such labels include, but are not limited to, radiolabels that can be measured with radiation-counting devices; pigments, dyes or other chromogens that can be visually observed or measured with a spectrophotometer; spin labels that can be measured with a spin label analyzer; and fluorescent moieties, where the output signal is generated by the excitation of a suitable molecular adduct and that can be visualized by excitation with light that is absorbed by the dye or can be measured with standard fluorometers or imaging systems, for example.
- the label can be a luminescent substance such as a phosphor or fluorogen; a bioluminescent substance; a chemiluminescent substance, where the output signal is generated by chemical modification of the signal compound; a metal-containing substance; or an enzyme, where there occurs an enzyme-dependent secondary generation of signal, such as the formation of a colored product from a colorless substrate.
- the label may also take the form of a chemical or biochemical, or an inert particle, including but not limited to colloidal gold, microspheres, quantum dots, or inorganic crystals such as nanocrystals or phosphors (see, e.g., Beverloo, et al., Anal. Biochem.203, 326-34 (1992)).
- the term label can also refer to a “tag” or hapten that can bind selectively to a labeled molecule such that the labeled molecule, when added subsequently, is used to generate a detectable signal.
- a tag or hapten that can bind selectively to a labeled molecule such that the labeled molecule, when added subsequently, is used to generate a detectable signal.
- HRP horseradish peroxidase
- a chromogenic substrate e.g., tetramethylbenzidine
- a fluorogenic substrate such as AmplexTM Red or AmplexTM Gold (Thermo Fisher Scientific, Waltham, MA)
- the tag can be a hapten or antigen (e.g., digoxigenin), and an enzymatically, fluorescently, or radioactively labeled antibody can be used to bind to the tag.
- hapten or antigen e.g., digoxigenin
- an enzymatically, fluorescently, or radioactively labeled antibody can be used to bind to the tag.
- Numerous labels are known by those of skill in the art and include, but are not limited to, particles, fluorescent dyes, haptens, enzymes and their chromogenic, fluorogenic, and chemiluminescent substrates, and other labels that are described in Johnson, I. and Spence, M.T.Z, (Eds.). (2010) The Molecular Probes Handbook: A Guide to Fluorescent Probes and Labeling Technologies, 11 th edition. Attorney Docket No.
- nucleic acid molecule means at least two nucleotides covalently linked together.
- the depiction of a single strand also defines the sequence of the complementary strand.
- a nucleic acid molecule also encompasses the complementary strand of a depicted single strand.
- Many variants of a nucleic acid molecule can be used for the same purpose as a given nucleic acid molecule.
- a nucleic acid molecule also encompasses substantially identical nucleic acid molecules and complements thereof.
- Nucleic acid molecules can be single stranded or double stranded, or can contain portions of double stranded and single stranded sequence.
- the nucleic acid molecule can be DNA (both genomic and cDNA), RNA, or a hybrid, where the nucleic acid molecule can contain combinations of deoxyribo- and ribo-nucleotides, and combinations of bases including uracil, adenine, thymine, cytosine, guanine, inosine, xanthine hypoxanthine, isocytosine and isoguanine.
- Nucleic acid molecules can have post-transcriptional chemical modifications. Nucleic acid molecules can be obtained by chemical synthesis methods or by recombinant methods.
- “Oligonucleotide-based fluorescent dye” as used herein means a nucleic acid nanostructure composed of a DNA-based scaffold that precisely arranges fluorophores in order to engineer their interactions and the overall fluorescent properties of the structure. Examples of oligonucleotide-based fluorescent dyes are described in International Patent Application Publication No. WO 2018/231805 and include, but are not limited to, NovaFluorTM dyes (Thermo Fisher Scientific, Waltham, MA). [0095] A “peptide,” “protein,” or “polypeptide” as used herein can mean a linked sequence of amino acids and can be natural, synthetic, or a modification or combination of natural and synthetic.
- a peptide, protein, or polypeptide can have post-translational modifications.
- “Vector” as used herein means a polynucleotide sequence containing an origin of replication.
- a vector can be a viral vector, bacteriophage, bacterial artificial chromosome, or yeast artificial chromosome.
- a vector can be a DNA or RNA vector.
- a vector can be a self-replicating extrachromosomal vector, and preferably, is a DNA plasmid.
- the vector can contain or include one or more heterologous polynucleotide sequences.
- Engineered Antibodies Attorney Docket No. TP385350WO1
- Antibody sensitivity is influenced both by increased signal and decreased background.
- Antibody sensitivity can be increased by affinity maturation of the antibody clone, which involves mutations of the antigen binding site or paratope.
- affinity maturation has to be tailored for each antibody and therefore is not a scalable solution to address a large number of antibodies.
- mutations to the paratope change the clone of the antibody and essentially produces a new antibody.
- the instant disclosure provides an approach for increasing antibody sensitivity by rational modification of the antibody Fc region. Amplification or expansion of the entire Fc domain or portions of the Fc domain provides additional binding sites for secondary antibodies, resulting in an enhanced signal. Prior studies have utilized Fc amplification for other purposes such as increased antibody effects in a therapeutic application by enhanced binding to Fc receptors, in the case of a humanized antibody. It was found that antibody modification by adding one additional Fc domain (1TdFc) or two additional Fc domains (2TdFc) to the antibody resulted in poor expression resulting in a low yield and have aggregation and purity challenges.
- the instant disclosure provides a rational design to circumvent the disadvantages of the prior studies by selectively adding additional CH2 domains (2TdCH2) instead of the entire Fc region.
- the 2TdCH2 design of the instant polypeptides and antibodies provided herein overcame the above challenges and it was unexpectedly found that the 2TdCH2 engineered antibodies provided herein had comparable yields, monomer purity, and stability to wildtype antibodies.
- the two additional CH2 domains, joined by a hinge and a linker, offer additional epitopes for secondary antibody binding and additional lysine residues for conjugation.
- 2TdCH2 engineered antibodies of the present disclosure provide a significant increase in sensitivity in multiple applications such as western blotting and immunocytochemistry and allow for broader applicability of the antibodies.
- 2TdCH2 engineering also provides additional binding sites for different conjugation chemistries. It was also unexpectedly found that Attorney Docket No. TP385350WO1 introduction of specific mutations, L234F, L235E and P331S, herein described as “LFLEPS mutations”, into the engineered backbone reduced background binding of the antibody to Fc gamma receptors present on selected cells.
- the advantages of the engineered antibodies of the present disclosure include: i) increased sensitivity of at least 1.5-fold; ii) reduced background by at least 1.5-fold; ii) detection of low abundance targets that are otherwise difficult to detect with standard antibodies; iii) increased application coverage through the use of multiplexing; iv) increased conjugation sites for primary conjugates; and v) addresses design challenges of expression, purity and stability found with other recombinant antibodies.
- isolated polypeptides comprising, consisting essentially of, or consisting of the amino acid sequence of Formula I: Z-(X-Yn-Zr)p-X, wherein: Z is a hinge region, X is a CH2 domain, Y is a linker, n is an integer of 1 or greater, p is an integer of 2 or greater, and r is an integer of 0 or 1.
- Z is a hinge region
- X is a CH2 domain
- Y is a linker
- n is an integer of 1 or greater
- p is an integer of 2 or greater
- r is an integer of 0 or 1.
- the hinge (Z) region can comprise the amino acid sequence of SEQ ID NO: 18.
- the hinge (Z) can comprise an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 18.
- the hinge (Z) can comprise an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 18.
- the hinge (Z) can comprise the amino acid sequence of SEQ ID NO: 48.
- the hinge (Z) can comprise an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 48.
- the hinge (Z) can comprise an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 48.
- the hinge (Z) can comprise the amino acid sequence of SEQ ID NO: 102.
- the hinge (Z) can comprise an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 102.
- the hinge (Z) can comprise an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 102.
- the CH2 domain (X) can comprise the amino acid sequence of SEQ ID NO: 19.
- the CH2 domain (X) can comprise an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 19.
- the CH2 domain (X) can comprise an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 19.
- the CH2 domain (X) can comprise the amino acid sequence of SEQ ID NO: 49.
- the CH2 domain (X) can comprise an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 49.
- the CH2 domain (X) can comprise an amino acid sequence with at least 95% sequence identity to SEQ Attorney Docket No. TP385350WO1 ID NO: 49.
- the CH2 domain (X) can comprise the amino acid sequence of SEQ ID NO: 104.
- the CH2 domain (X) can comprise an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 104.
- the CH2 domain (X) can comprise an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 104.
- the isolated polypeptide can comprise one or more linkers (Y) comprising the amino acid sequence of GS, GGS, SEQ ID NO: 14, SEQ ID NO: 38, SEQ ID NO: 43, or SEQ ID NO: 44.
- the one or more linkers (Y) can comprise GS.
- the one or more linkers (Y) can comprise GGS.
- the one or more linkers (Y) can comprise SEQ ID NO: 14.
- the one or more linkers (Y) can comprise SEQ ID NO: 38.
- the one or more linkers can comprise SEQ ID NO: 43.
- the one or more linkers (Y) can comprise a sequence with at least 90% sequence identity to SEQ ID NO: 43.
- the one or more linkers (Y) can comprise SEQ ID NO: 44.
- the one or more linkers (Y) can comprise a sequence with at least 90% sequence identity to SEQ ID NO: 44.
- the isolated polypeptide can comprise one linker (Y), such that n is 1.
- the isolated polypeptide can comprise two linkers (Y), such that n is 2.
- the isolated polypeptide can comprise three linkers (Y), such that n is 3.
- the isolated polypeptide can comprise four linkers (Y), such that n is 4.
- the isolated polypeptide can comprise five linkers (Y), such that n is 5.
- the isolated polypeptide can comprise two or more regions comprising a CH2-linker region ((X-Y n ) p ), such that p is 2 or greater.
- the isolated polypeptide can comprise two CH2-linker regions ((X-Yn)p), such that p is 2.
- the isolated polypeptide can comprise three CH2-linker regions ((X-Yn)p), such that p is 3.
- the isolated polypeptide can comprise four CH2-linker regions ((X-Y n ) p ), such that p is 4.
- the isolated polypeptide can comprise five CH2-linker regions ((X-Y n ) p ), such that p is 5.
- the isolated polypeptide can comprise two or more regions comprising a CH2-linker-hinge region ((X-Yn-Zr)p), such that p is 2 or greater.
- the isolated polypeptide can comprise two CH2-linker-hinge regions ((X-Y n -Z r ) p ), such that p is 2.
- the isolated polypeptide can comprise three CH2-linker-hinge regions ((X-Yn-Zr)p), such that p is 3.
- the isolated polypeptide can comprise four CH2-linker-hinge regions ((X-Yn-Zr)p), such that p is 4.
- the isolated polypeptide can comprise five CH2-linker-hinge regions ((X-Y n -Z r ) p ), such that p is 5.
- Attorney Docket No. TP385350WO1 [00106]
- the isolated polypeptide comprises, consists essentially of, or consists of (X-Yn-Zr)p, wherein Z (hinge) comprises the amino acid sequence of SEQ ID NO: 18, X (CH2 domain) comprises the amino acid sequence of SEQ ID NO: 19, Y (linker) comprises the amino acid sequence of SEQ ID NO: 44, wherein n is 1, r is 0 or 1, and p is 2.
- the isolated polypeptide comprises, consists essentially of, or consists of (X-Y n -Z r ) p , wherein Z (hinge) comprises the amino acid sequence of SEQ ID NO: 48, X (CH2 domain) comprises the amino acid sequence of SEQ ID NO: 49, Y (linker) comprises the amino acid sequence of SEQ ID NO: 44, wherein n is 1, r is 0 or 1, and p is 2.
- the isolated polypeptide comprises, consists essentially of, or consists of (X-Yn-Zr)p, wherein Z (hinge) comprises the amino acid sequence of SEQ ID NO: 102, X (CH2 domain) comprises the amino acid sequence of SEQ ID NO: 104, Y (linker) comprises the amino acid sequence of SEQ ID NO: 44, wherein n is 1, r is 0 or 1, and p is 2.
- the isolated polypeptide comprises, consists essentially of, or consists of (X-Y n -Z r ) p , wherein Z (hinge) comprises the amino acid sequence of SEQ ID NO: 102, X (CH2 domain) comprises the amino acid sequence of SEQ ID NO: 104, Y (linker) comprises the amino acid sequence of SEQ ID NO: 45, wherein n is 1, r is 0 or 1, and p is 2. [00110] In some embodiments, the isolated polypeptide comprises two additional CH2 domains N-terminal to the Fc domain connected via a hinge and optionally, one or more linkers.
- the isolated polypeptide comprising two additional CH2 domains N-terminal to the Fc domain connected via a hinge and optionally one or more linkers can comprise the amino acid sequence of SEQ ID NO: 52 or SEQ ID NO: 54.
- the isolated polypeptide comprising a CH3 domain comprises SEQ ID NO: 52.
- the isolated polypeptide comprising two additional CH2 domains N-terminal to the Fc domain connected via a hinge and optionally one or more linkers can comprise an amino acid sequence with at least 90% identity to SEQ ID NO: 52.
- the isolated polypeptide comprising two additional CH2 domains N-terminal to the Fc domain connected via a hinge and optionally one or more linkers can comprise an amino acid sequence with at least 95% identity to SEQ ID NO: 52.
- the isolated polypeptide comprises two additional CH2 domains N-terminal to the Fc domain connected via a hinge and optionally one or more linkers and comprises “LFLEPS” mutations within the lower hinge and CH2 domains.
- the “LFLEPS” mutations can comprise the following amino acid substitutions: L234F, L235E and P331S.
- the isolated polypeptide comprising two additional CH2 domains N-terminal to the Fc domain connected via a hinge and optionally one or more linkers and comprises “LFLEPS” mutations within the lower hinge and CH2 domains comprises SEQ ID NO: 54.
- the isolated polypeptide comprising two additional CH2 domains N-terminal to the Fc domain connected via a hinge and optionally one or more linkers and comprises “LFLEPS” mutations within the lower hinge and CH2 domains can comprise an amino acid sequence with at least 90% identity to SEQ ID NO: 54.
- the isolated polypeptide comprising two additional CH2 domains N-terminal to the Fc domain connected via a hinge and optionally one or more linkers and comprises “LFLEPS” mutations within the lower hinge and CH2 domains can comprise an amino acid sequence with at least 95% identity to SEQ ID NO: 54.
- Any isolated polypeptide disclosed herein can be linked to a second polypeptide by one or more disulfide bonds, wherein the isolated polypeptide and the second polypeptide share the same amino acid sequence.
- the one or more disulfide bonds can occur between a hinge of the isolated polypeptide and a hinge of the second polypeptide.
- Any isolated polypeptide disclosed herein can further comprise a CH3 domain.
- isolated polypeptides disclosed herein further comprises no more than one CH3 domain.
- the CH3 domain comprises the amino acid sequence of SEQ ID NO: 20.
- the CH3 domain can comprise an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 20.
- the CH1 domain can comprise the amino acid sequence of SEQ ID NO: 100.
- the CH1 domain can comprise an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 100.
- the CH1 domain can comprise an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 100.
- the Fab can comprise a Fab heavy chain and a Fab light chain that pair to form a binding domain. [00118] In some embodiments, the Fab can comprise a CH1 domain.
- the CH1 domain can comprise the amino acid sequence of SEQ ID NO: 160.
- the CH1 domain can comprise an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 160.
- the CH1 domain can comprise an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 160.
- the Fab can comprise a Fab heavy chain and a Fab light chain that pair to form a binding domain.
- the antibodies comprising any isolated peptide disclosed herein linked to a Fab domain have a reduction of background signal of at least 1.5- fold, compared to a corresponding wildtype antibody.
- the reduction of background signal is at least 1.5-fold, at least 2-fold, at least 2.5-fold, at least 3-fold, at least 3.5-fold, at least 4-fold, at least 4.5-fold or at least 5-fold compared to a corresponding wild type antibody.
- the antibodies comprising any isolated peptide disclosed herein linked to a Fab domain have an increase in sensitivity of at least 1.5-fold compared to a corresponding wild type antibody.
- the increase in sensitivity is at least 1.5-fold, at least 2-fold, at least 2.5-fold, at least 3-fold, at least 3.5-fold, at least 4-fold, at least 4.5-fold, at least 5-fold, at least 5.5-fold, at least 6-fold, at least 6.5- Attorney Docket No.
- the antibodies comprising any isolated peptide disclosed herein linked to a Fab domain has an increase in signal enhancement of at least 1.5- fold compared to a corresponding wild type antibody.
- the increase in signal enhancement is at least 1.5-fold, at least 2-fold, at least 2.5-fold, at least 3-fold, at least 3.5-fold, at least 4-fold, at least 4.5-fold, at least 5-fold, at least 5.5-fold, at least 6-fold, at least 6.5-fold, at least 7-fold, at least 7.5-fold, at least 8-fold, at least 8.5-fold, at least 9-fold, at least 9.5-fold, or at least 10-fold compared to a corresponding wild type antibody.
- the Fab of the antibody can immunospecifically bind to one or more target molecules.
- the Fab can immunospecifically bind to Parkin, OCT4, IDO1, FLAG-tag, pERK1/2, PSD-95, or TIGIT, or the Fab can be a rabbit anti-mouse (RAM) IgG secondary antibody.
- the Fab immunospecifically binds to Parkin.
- the Fab that immunospecifically binds to Parkin can comprise a Fab heavy chain comprising a heavy chain complementarity determining region 1 (HCDR1) comprising the amino acid sequence of SEQ ID NO: 4, a HCDR2 comprising the amino acid sequence of SEQ ID NO: 5, and a HCDR3 comprising the amino acid sequence of SEQ ID NO: 6.
- the CDRs are defined according to the IMGT system.
- the Fab that immunospecifically binds to Parkin can comprise a Fab heavy chain comprising a variable region comprising the amino acid sequence of SEQ ID NO: 7.
- the Fab that immunospecifically binds to Parkin can comprise a Fab heavy chain comprising a variable region comprising an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 7.
- the Fab that immunospecifically binds to Parkin can comprise a Fab heavy chain comprising a variable region comprising an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 7.
- the Fab that immunospecifically binds to Parkin can comprise a Fab heavy chain comprising a variable region comprising the amino acid sequence of SEQ ID NO: 9.
- the Fab that immunospecifically binds to Parkin can comprise a Fab heavy chain comprising a variable region comprising an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 9.
- the Fab that immunospecifically binds to Parkin can comprise a Fab heavy Attorney Docket No. TP385350WO1 chain comprising a variable region comprising an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 9.
- the Fab that immunospecifically binds to Parkin can comprise a Fab light chain comprising a light chain complementarity determining region 1 (LCDR1) comprising the amino acid sequence of SEQ ID NO: 13, a LCDR2 comprising the amino acid sequence RAS, and a LCDR3 comprising the amino acid sequence of SEQ ID NO: 15.
- the Fab that immunospecifically binds to Parkin can comprise a Fab light chain comprising a variable region comprising the amino acid sequence of SEQ ID NO: 16.
- the Fab that immunospecifically binds to Parkin can comprise a Fab light chain comprising a variable region comprising an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 16.
- the Fab that immunospecifically binds to Parkin can comprise a Fab light chain comprising a variable region comprising an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 16.
- the Fab that immunospecifically binds to Parkin can comprise a Fab light chain comprising a variable region comprising the amino acid sequence of SEQ ID NO: 12.
- the Fab that immunospecifically binds to Parkin can comprise a Fab light chain comprising a variable region comprising an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 12.
- the Fab that immunospecifically binds to Parkin can comprise a Fab light chain comprising a variable region comprising an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 12.
- the Fab that immunospecifically binds to Parkin can comprise a Fab heavy chain comprising a heavy chain complementarity determining region 1 (HCDR1) comprising the amino acid sequence of SEQ ID NO: 4, a HCDR2 comprising the amino acid sequence of SEQ ID NO: 5, and a HCDR3 comprising the amino acid sequence of SEQ ID NO: 6, and a Fab light chain comprising a light chain complementarity determining region 1 (LCDR1) comprising the amino acid sequence of SEQ ID NO: 13, a LCDR2 comprising the amino acid sequence RAS, and a LCDR3 comprising the amino acid sequence of SEQ ID NO: 15.
- HCDR1 heavy chain complementarity determining region 1
- LCDR3 light chain comprising a light chain complementarity determining region 1
- the Fab that immunospecifically binds to Parkin can comprise a Fab heavy chain comprising a variable region comprising the amino acid sequence of SEQ ID NO: 7 and a Fab light chain comprising a variable region comprising the amino acid sequence of SEQ ID NO: 16.
- the Fab that immunospecifically binds to Parkin can comprise a Fab heavy chain comprising a variable region comprising an amino acid sequence with at least 90% Attorney Docket No. TP385350WO1 sequence identity to SEQ ID NO: 7 and a Fab light chain comprising a variable region comprising an amino acid sequence with at least 90% sequence identity to the amino acid sequence of SEQ ID NO: 16.
- the Fab that immunospecifically binds to Parkin can comprise a Fab heavy chain comprising a variable region comprising an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 7 and a Fab light chain comprising a variable region comprising an amino acid sequence with at least 95% sequence identity to the amino acid sequence of SEQ ID NO: 16.
- the Fab that immunospecifically binds to Parkin can comprise a Fab heavy chain comprising a variable region comprising the amino acid sequence of SEQ ID NO: 9 and a Fab light chain comprising a variable region comprising the amino acid sequence of SEQ ID NO: 12.
- the Fab that immunospecifically binds to Parkin can comprise a Fab heavy chain comprising a variable region comprising an amino acid sequence with at least 90% sequence identity to the amino acid sequence of SEQ ID NO: 9 and a Fab light chain comprising a variable region comprising an amino acid sequence with at least 90% sequence identity to the amino acid sequence of SEQ ID NO: 12.
- the Fab that immunospecifically binds to Parkin can comprise a Fab heavy chain comprising a variable region comprising an amino acid sequence with at least 95% sequence identity to the amino acid sequence of SEQ ID NO: 9 and a Fab light chain comprising a variable region comprising an amino acid sequence with at least 95% sequence identity to the amino acid sequence of SEQ ID NO: 12.
- the antibody comprising a Fab that immunospecifically binds to Parkin comprises the amino acid sequence of SEQ ID NO: 3.
- the antibody comprising a Fab that immunospecifically binds to Parkin can comprise an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 3.
- the antibody comprising a Fab that immunospecifically binds to Parkin can comprise an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 3.
- the Fab that immunospecifically binds to OCT4 can comprise a heavy chain complementarity determining region 1 (HCDR1) comprising the amino acid sequence of SEQ ID NO: 29, a HCDR2 comprising the amino acid sequence of SEQ ID NO: 30, and a HCDR3 comprising the amino acid sequence of SEQ ID NO: 31.
- the Fab that immunospecifically binds to OCT4 can comprise a Fab heavy chain comprising a variable region comprising the amino acid sequence of SEQ ID NO: 32.
- the Fab that immunospecifically binds to OCT4 can comprise a Fab heavy chain comprising a variable region comprising an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 32.
- the Fab that immunospecifically binds to OCT4 can comprise a Fab heavy chain comprising a variable region comprising an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 32.
- the Fab that immunospecifically binds to OCT4 can comprise a Fab heavy chain comprising a variable region comprising the amino acid sequence of SEQ ID NO: 34.
- the Fab that immunospecifically binds to OCT4 can comprise a Fab heavy chain comprising a variable region comprising an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 34.
- the Fab that immunospecifically binds to OCT4 can comprise a Fab heavy chain comprising a variable region comprising an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 34.
- the Fab that immunospecifically binds OCT4 can comprise a Fab light chain comprising a light chain complementarity determining region 1 (LCDR1) comprising the amino acid sequence of SEQ ID NO: 37, a LCDR2 comprising the amino acid sequence GAS, and a LCDR3 comprising the amino acid sequence of SEQ ID NO: 39.
- the Fab that immunospecifically binds OCT4 can comprise a Fab light chain comprising a variable region comprising the amino acid sequence of SEQ ID NO: 40.
- the Fab that immunospecifically binds OCT4 can comprise a Fab light chain comprising a variable region comprising an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 40.
- the Fab that immunospecifically binds OCT4 can comprise a Fab light chain comprising a variable region comprising an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 40.
- the Fab that immunospecifically binds to OCT4 can comprise a Fab light chain comprising a variable region comprising the amino acid sequence of SEQ ID NO: 36.
- the Fab that immunospecifically binds OCT4 can comprise a Fab light chain comprising a variable region comprising an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 36.
- the Fab that immunospecifically binds OCT4 can comprise a Fab light chain comprising a variable region comprising an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 36.
- the Fab that immunospecifically binds to OCT4 can comprise a Fab heavy chain comprising a heavy chain complementarity determining region 1 (HCDR1) comprising Attorney Docket No. TP385350WO1 the amino acid sequence of SEQ ID NO: 29, a HCDR2 comprising the amino acid sequence of SEQ ID NO: 30, and a HCDR3 comprising the amino acid sequence of SEQ ID NO: 31, and a Fab light chain comprising a light chain complementarity determining region 1 (LCDR1) comprising the amino acid sequence of SEQ ID NO: 37, a LCDR2 comprising the amino acid sequence GAS, and a LCDR3 comprising the amino acid sequence of SEQ ID NO: 39.
- HCDR1 heavy chain complementarity determining region 1
- LCDR3 light chain complementarity determining region 1
- the Fab that immunospecifically binds to OCT4 can comprise a Fab heavy chain comprising a variable region comprising the amino acid sequence of SEQ ID NO: 32 and a Fab light chain comprising a variable region comprising the amino acid sequence of SEQ ID NO: 40.
- the Fab that immunospecifically binds to OCT4 can comprise a Fab heavy chain comprising a variable region comprising an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 32 and a Fab light chain comprising a variable region comprising an amino acid sequence with at least 90% sequence identity to the amino acid sequence of SEQ ID NO: 40.
- the Fab that immunospecifically binds to OCT4 can comprise a Fab heavy chain comprising a variable region comprising an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 32 and a Fab light chain comprising a variable region comprising an amino acid sequence with at least 95% sequence identity to the amino acid sequence of SEQ ID NO: 40.
- the Fab that immunospecifically binds to OCT4 can comprise a Fab heavy chain comprising a variable region comprising the amino acid sequence of SEQ ID NO: 34 and a Fab light chain comprising a variable region comprising the amino acid sequence of SEQ ID NO: 36.
- the Fab that immunospecifically binds to OCT4 can comprise a Fab heavy chain comprising a variable region comprising an amino acid sequence with at least 90% sequence identity to the amino acid sequence of SEQ ID NO: 34 and a Fab light chain comprising a variable region comprising an amino acid sequence with at least 90% sequence identity to the amino acid sequence of SEQ ID NO: 36.
- the Fab that immunospecifically binds to OCT4 can comprise a Fab heavy chain comprising a variable region comprising an amino acid sequence with at least 95% sequence identity to the amino acid sequence of SEQ ID NO: 34 and a Fab light chain comprising a variable region comprising an amino acid sequence with at least 95% sequence identity to the amino acid sequence of SEQ ID NO: 36.
- the antibody comprising a Fab that immunospecifically binds to OCT4 comprises the amino acid sequence of SEQ ID NO: 28.
- Attorney Docket No. TP385350WO1 The isolated polypeptide comprising a Fab that immunospecifically binds to OCT4 can comprise an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 28.
- the isolated polypeptide comprising a Fab that immunospecifically binds to OCT4 can comprise an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 28.
- the Fab that immunospecifically binds to IDO1 can comprise a heavy chain complementarity determining region 1 (HCDR1) comprising the amino acid sequence of SEQ ID NO: 66, a HCDR2 comprising the amino acid sequence of SEQ ID NO: 67, and a HCDR3 comprising the amino acid sequence of SEQ ID NO: 68.
- the Fab that immunospecifically binds to IDO1 can comprise a Fab heavy chain comprising a variable region comprising the amino acid sequence of SEQ ID NO: 65.
- the Fab that immunospecifically binds to IDO1 can comprise a Fab heavy chain comprising a variable region comprising an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 65.
- the Fab that immunospecifically binds to IDO1 can comprise a Fab heavy chain comprising a variable region comprising an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 65.
- the Fab that immunospecifically binds IDO1 can comprise a Fab light chain comprising a light chain complementarity determining region 1 (LCDR1) comprising the amino acid sequence of SEQ ID NO: 72, a LCDR2 comprising the amino acid sequence of YAS, and a LCDR3 comprising the amino acid sequence of SEQ ID NO: 73.
- the Fab that immunospecifically binds IDO1 can comprise a Fab light chain comprising a variable region comprising the amino acid sequence of SEQ ID NO: 71.
- the Fab that immunospecifically binds IDO1 can comprise a Fab light chain comprising a variable region comprising an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 71.
- the Fab that immunospecifically binds IDO1 can comprise a Fab light chain comprising a variable domain comprising an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 71.
- the Fab that immunospecifically binds to IDO1 can comprise a Fab heavy chain comprising a heavy chain complementarity determining region 1 (HCDR1) comprising the amino acid sequence of SEQ ID NO: 66, a HCDR2 comprising the amino acid sequence of SEQ ID NO: 67, and a HCDR3 comprising the amino acid sequence of SEQ ID NO: 68, and a Fab light chain comprising a light chain complementarity determining region 1
- LCDR1 comprising the amino acid sequence of SEQ ID NO: 72
- LCDR2 comprising the amino acid sequence of YAS
- LCDR3 comprising the amino acid sequence of SEQ ID NO: 73.
- the Fab that immunospecifically binds to IDO1 can comprise a Fab heavy chain comprising a variable region comprising the amino acid sequence of SEQ ID NO: 65 and a Fab light chain comprising a variable region comprising the amino acid sequence of SEQ ID NO: 71.
- the Fab that immunospecifically binds to IDO1 can comprise a Fab heavy chain comprising a variable region comprising an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 65 and a Fab light chain comprising a variable region comprising an amino acid sequence with at least 90% sequence identity to the amino acid sequence of SEQ ID NO: 71.
- the Fab that immunospecifically binds to IDO1 can comprise a Fab heavy chain comprising a variable region comprising an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 65 and a Fab light chain comprising a variable region comprising an amino acid sequence with at least 95% sequence identity to the amino acid sequence of SEQ ID NO: 71.
- the antibody comprising a Fab that immunospecifically binds to IDO1 comprises the amino acid sequence of SEQ ID NO: 79.
- the isolated polypeptide comprising a Fab that immunospecifically binds to IDO1 can comprise an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 79.
- the isolated polypeptide comprising a Fab that immunospecifically binds to IDO1 can comprise an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 79.
- the Fab that immunospecifically binds to FLAG-tag can comprise a heavy chain complementarity determining region 1 (HCDR1) comprising the amino acid sequence of SEQ ID NO: 163, a HCDR2 comprising the amino acid sequence of SEQ ID NO: 164, and a HCDR3 comprising the amino acid sequence of SEQ ID NO: 165.
- HCDR1 heavy chain complementarity determining region 1
- the Fab that immunospecifically binds to FLAG-tag can comprise a Fab heavy chain comprising a variable region comprising the amino acid sequence of SEQ ID NO: 162.
- the Fab that immunospecifically binds to FLAG-tag can comprise a Fab heavy chain comprising a variable region comprising an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 162.
- the Fab that immunospecifically binds to FLAG-tag Attorney Docket No. TP385350WO1 can comprise a Fab heavy chain comprising a variable region comprising an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 162.
- the Fab that immunospecifically binds FLAG-tag can comprise a Fab light chain comprising a light chain complementarity determining region 1 (LCDR1) comprising the amino acid sequence of SEQ ID NO: 168, a LCDR2 comprising the amino acid sequence of YAS, and a LCDR3 comprising the amino acid sequence of SEQ ID NO: 169.
- the Fab that immunospecifically binds FLAG-tag can comprise a Fab light chain comprising a variable region comprising the amino acid sequence of SEQ ID NO: 167.
- the Fab that immunospecifically binds FLAG-tag can comprise a Fab light chain comprising a variable region comprising an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 167.
- the Fab that immunospecifically binds FLAG-tag can comprise a Fab light chain comprising a variable domain comprising an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 167.
- the Fab that immunospecifically binds to FLAG-tag can comprise a Fab heavy chain comprising a heavy chain complementarity determining region 1 (HCDR1) comprising the amino acid sequence of SEQ ID NO: 163, a HCDR2 comprising the amino acid sequence of SEQ ID NO: 164, and a HCDR3 comprising the amino acid sequence of SEQ ID NO: 165, and a Fab light chain comprising a light chain complementarity determining region 1 (LCDR1) comprising the amino acid sequence of SEQ ID NO: 168, a LCDR2 comprising the amino acid sequence of YAS, and a LCDR3 comprising the amino acid sequence of SEQ ID NO: 169.
- HCDR1 heavy chain complementarity determining region 1
- LCDR1 light chain complementarity determining region
- the Fab that immunospecifically binds to FLAG-tag can comprise a Fab heavy chain comprising a variable region comprising the amino acid sequence of SEQ ID NO: 162 and a Fab light chain comprising a variable region comprising the amino acid sequence of SEQ ID NO: 167.
- the Fab that immunospecifically binds to FLAG-tag can comprise a Fab heavy chain comprising a variable region comprising an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 162 and a Fab light chain comprising a variable region comprising an amino acid sequence with at least 90% sequence identity to the amino acid sequence of SEQ ID NO: 167.
- the Fab that immunospecifically binds to FLAG- tag can comprise a Fab heavy chain comprising a variable region comprising an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 162 and a Fab light chain Attorney Docket No. TP385350WO1 comprising a variable region comprising an amino acid sequence with at least 95% sequence identity to the amino acid sequence of SEQ ID NO: 167.
- the antibody comprising a Fab that immunospecifically binds to FLAG-tag comprises the amino acid sequence of SEQ ID NO: 175.
- the isolated polypeptide comprising a Fab that immunospecifically binds to FLAG-tag can comprise an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 175.
- the isolated polypeptide comprising a Fab that immunospecifically binds to FLAG-tag can comprise an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 175.
- the Fab is a rabbit anti-mouse IgG secondary antibody (also referred to herein as “rabbit anti-mouse IgG antibody,” “rabbit anti-mouse IgG,” or “RAM”).
- the Fab that is a RAM can comprise a heavy chain complementarity determining region 1 (HCDR1) comprising the amino acid sequence of SEQ ID NO: 127, a HCDR2 comprising the amino acid sequence of SEQ ID NO: 128, and a HCDR3 comprising the amino acid sequence of SEQ ID NO: 129.
- the Fab that is a RAM can comprise a Fab heavy chain comprising a variable region comprising the amino acid sequence of SEQ ID NO: 126.
- the Fab that is a RAM can comprise a Fab heavy chain comprising a variable region comprising an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 126.
- the Fab that is a RAM can comprise a Fab heavy chain comprising a variable region comprising an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 126.
- the Fab that is a RAM can comprise a Fab light chain comprising a light chain complementarity determining region 1 (LCDR1) comprising the amino acid sequence of SEQ ID NO: 132, a LCDR2 comprising the amino acid sequence of GAS, and a LCDR3 comprising the amino acid sequence of SEQ ID NO: 133.
- the Fab that is a RAM can comprise a Fab light chain comprising a variable region comprising the amino acid sequence of SEQ ID NO: 131.
- the Fab that is a RAM can comprise a Fab light chain comprising a variable region comprising an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 131.
- the Fab that is a RAM can comprise a Fab light chain comprising a variable region comprising an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 131.
- the Fab that is a RAM can comprise a Fab heavy chain comprising a heavy chain complementarity determining region 1 (HCDR1) comprising the amino acid sequence of SEQ ID NO: 127, a HCDR2 comprising the amino acid sequence of SEQ ID NO: 128, and a HCDR3 comprising the amino acid sequence of SEQ ID NO: 129, and a Fab light chain comprising a light chain complementarity determining region 1 (LCDR1) comprising the amino acid sequence of SEQ ID NO: 132, a LCDR2 comprising the amino acid sequence of GAS, and a LCDR3 comprising the amino acid sequence of SEQ ID NO: 133.
- HCDR1 heavy chain complementarity determining region 1
- LCDR1 light chain complementar
- the Fab that is a RAM can comprise a Fab heavy chain comprising a variable region comprising the amino acid sequence of SEQ ID NO: 126 and a Fab light chain comprising a variable region comprising the amino acid sequence of SEQ ID NO: 131.
- the Fab that is a RAM can comprise a Fab heavy chain comprising a variable region comprising an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 126 and a Fab light chain comprising a variable region comprising an amino acid sequence with at least 90% sequence identity to the amino acid sequence of SEQ ID NO: 131.
- the Fab that is a RAM can comprise a Fab heavy chain comprising a variable region comprising an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 126 and a Fab light chain comprising a variable region comprising an amino acid sequence with at least 95% sequence identity to the amino acid sequence of SEQ ID NO: 131.
- the antibody comprising a Fab that is a RAM comprises the amino acid sequence of SEQ ID NO: 139.
- the isolated polypeptide comprising a RAM can comprise an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 139.
- the isolated polypeptide comprising a RAM can comprise an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 139.
- the Fab that immunospecifically binds to pERK1/2 can comprise a heavy chain complementarity determining region 1 (HCDR1) comprising the amino acid sequence of SEQ ID NO: 85, a HCDR2 comprising the amino acid sequence of SEQ ID NO: 86, and a HCDR3 comprising the amino acid sequence of SEQ ID NO: 87.
- the Fab that immunospecifically binds to pERK1/2 can comprise a Fab heavy chain comprising a variable region comprising the amino acid sequence of SEQ ID NO: 84.
- the Fab that immunospecifically binds to pERK1/2 can comprise a Fab heavy chain comprising a variable region comprising an amino acid sequence with at least 90% sequence Attorney Docket No. TP385350WO1 identity to SEQ ID NO: 84.
- the Fab that immunospecifically binds to pERK1/2 can comprise a Fab heavy chain comprising a variable region comprising an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 84.
- the Fab that immunospecifically binds pERK1/2 can comprise a Fab light chain comprising a light chain complementarity determining region 1 (LCDR1) comprising the amino acid sequence of SEQ ID NO: 91, a LCDR2 comprising the amino acid sequence of KVS, and a LCDR3 comprising the amino acid sequence of SEQ ID NO: 92.
- the Fab that immunospecifically binds pERK1/2 can comprise a Fab light chain comprising a variable region comprising the amino acid sequence of SEQ ID NO: 90.
- the Fab that immunospecifically binds pERK1/2 can comprise a Fab light chain comprising a variable region comprising an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 90.
- the Fab that immunospecifically binds pERK1/2 can comprise a Fab light chain comprising a variable region comprising an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 90.
- the Fab that immunospecifically binds to pERK1/2 can comprise a Fab heavy chain comprising a heavy chain complementarity determining region 1 (HCDR1) comprising the amino acid sequence of SEQ ID NO: 85, a HCDR2 comprising the amino acid sequence of SEQ ID NO: 86, and a HCDR3 comprising the amino acid sequence of SEQ ID NO: 87, and a Fab light chain comprising a light chain complementarity determining region 1 (LCDR1) comprising the amino acid sequence of SEQ ID NO: 91, a LCDR2 comprising the amino acid sequence of KVS, and a LCDR3 comprising the amino acid sequence of SEQ ID NO: 92.
- HCDR1 heavy chain complementarity determining region 1
- LCDR1 light chain complementarity determining region
- the Fab that immunospecifically binds to pERK1/2 can comprise a Fab heavy chain comprising a variable region comprising the amino acid sequence of SEQ ID NO: 84 and a Fab light chain comprising a variable region comprising the amino acid sequence of SEQ ID NO: 90.
- the Fab that immunospecifically binds to pERK1/2 can comprise a Fab heavy chain comprising a variable region comprising an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 84 and a Fab light chain comprising a variable region comprising an amino acid sequence with at least 90% sequence identity to the amino acid sequence of SEQ ID NO: 90.
- the Fab that immunospecifically binds to pERK1/2 can comprise a Fab heavy chain comprising a variable region comprising an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 84 and a Fab light chain Attorney Docket No. TP385350WO1 comprising a variable region comprising an amino acid sequence with at least 95% sequence identity to the amino acid sequence of SEQ ID NO: 90.
- the antibody comprising a Fab that immunospecifically binds to pERK1/2 comprises the amino acid sequence of SEQ ID NO: 98.
- the isolated polypeptide comprising a Fab that immunospecifically binds to pERK1/2 can comprise an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 98.
- the isolated polypeptide comprising a Fab that immunospecifically binds to pERK1/2 can comprise an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 98.
- the Fab that immunospecifically binds to PSD-95 can comprise a heavy chain complementarity determining region 1 (HCDR1) comprising the amino acid sequence of SEQ ID NO: 111, a HCDR2 comprising the amino acid sequence of SEQ ID NO: 112, and a HCDR3 comprising the amino acid sequence of SEQ ID NO: 113.
- HCDR1 heavy chain complementarity determining region 1
- the Fab that immunospecifically binds to PSD-95 can comprise a Fab heavy chain comprising a variable region comprising the amino acid sequence of SEQ ID NO: 110.
- the Fab that immunospecifically binds to PSD-95 can comprise a Fab heavy chain comprising a variable region comprising an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 110.
- the Fab that immunospecifically binds to PSD-95 can comprise a Fab heavy chain comprising a variable region comprising an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 110.
- the Fab that immunospecifically binds PSD-95 can comprise a Fab light chain comprising a light chain complementarity determining region 1 (LCDR1) comprising the amino acid sequence of SEQ ID NO: 116, a LCDR2 comprising the amino acid sequence of DTS, and a LCDR3 comprising the amino acid sequence of SEQ ID NO: 117.
- the Fab that immunospecifically binds PSD-95 can comprise a Fab light chain comprising a variable region comprising the amino acid sequence of SEQ ID NO: 115.
- the Fab that immunospecifically binds PSD-95 can comprise a Fab light chain comprising a variable region comprising an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 115.
- the Fab that immunospecifically binds PSD-95 can comprise a Fab light chain comprising a variable region comprising an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 115.
- the Fab that immunospecifically binds to PSD-95 can comprise a Fab heavy chain comprising a heavy chain complementarity determining region 1 (HCDR1) comprising the amino acid sequence of SEQ ID NO: 111, a HCDR2 comprising the amino acid sequence of SEQ ID NO: 112, and a HCDR3 comprising the amino acid sequence of SEQ ID NO: 113, and a Fab light chain comprising a light chain complementarity determining region 1 (LCDR1) comprising the amino acid sequence of SEQ ID NO: 116, a LCDR2 comprising the amino acid sequence of DTS, and a LCDR3 comprising the amino acid sequence of SEQ ID NO: 117.
- HCDR1 heavy chain complementarity determining region 1
- LCDR1 light chain complementarity determining region 1
- the Fab that immunospecifically binds to PSD-95 can comprise a Fab heavy chain comprising a variable region comprising the amino acid sequence of SEQ ID NO: 110 and a Fab light chain comprising a variable region comprising the amino acid sequence of SEQ ID NO: 115.
- the Fab that immunospecifically binds to PSD-95 can comprise a Fab heavy chain comprising a variable region comprising an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 110 and a Fab light chain comprising a variable region comprising an amino acid sequence with at least 90% sequence identity to the amino acid sequence of SEQ ID NO: 115.
- the Fab that immunospecifically binds to PSD-95 can comprise a Fab heavy chain comprising a variable region comprising an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 110 and a Fab light chain comprising a variable region comprising an amino acid sequence with at least 95% sequence identity to the amino acid sequence of SEQ ID NO: 115.
- the antibody comprising a Fab that immunospecifically binds to PSD-95 comprises the amino acid sequence of SEQ ID NO: 123.
- the isolated polypeptide comprising a Fab that immunospecifically binds to PSD-95 can comprise an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 123.
- the isolated polypeptide comprising a Fab that immunospecifically binds to PSD-95 can comprise an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 123.
- the Fab that immunospecifically binds to TIGIT can comprise a heavy chain complementarity determining region 1 (HCDR1) comprising the amino acid sequence of SEQ ID NO: 146, a HCDR2 comprising the amino acid sequence of SEQ ID NO: 147, and a HCDR3 comprising the amino acid sequence of SEQ ID NO: 148.
- the Fab that immunospecifically binds to TIGIT can comprise a Fab heavy chain comprising a variable region comprising the amino acid sequence of SEQ ID NO: 145.
- the Fab that immunospecifically binds to TIGIT can comprise a Fab heavy chain comprising a variable region comprising an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 145.
- the Fab that immunospecifically binds to TIGIT can comprise a Fab heavy chain comprising a variable region comprising an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 145.
- the Fab that immunospecifically binds to TIGIT can comprise a Fab light chain comprising a light chain complementarity determining region 1 (LCDR1) comprising the amino acid sequence of SEQ ID NO: 151, a LCDR2 comprising the amino acid sequence of SAS, and a LCDR3 comprising the amino acid sequence of SEQ ID NO: 152.
- the Fab that immunospecifically binds to TIGIT can comprise a Fab light chain comprising a variable region comprising the amino acid sequence of SEQ ID NO: 150.
- the Fab that immunospecifically binds to TIGIT can comprise a Fab light chain comprising a variable region comprising an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 150.
- the Fab that immunospecifically binds to TIGIT can comprise a Fab light chain comprising a variable region comprising an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 150.
- the Fab that immunospecifically binds to TIGIT can comprise a Fab heavy chain comprising a heavy chain complementarity determining region 1 (HCDR1) comprising the amino acid sequence of SEQ ID NO: 146, a HCDR2 comprising the amino acid sequence of SEQ ID NO: 147, and a HCDR3 comprising the amino acid sequence of SEQ ID NO: 148, and a Fab light chain comprising a light chain complementarity determining region 1 (LCDR1) comprising the amino acid sequence of SEQ ID NO: 151, a LCDR2 comprising the amino acid sequence of SAS, and a LCDR3 comprising the amino acid sequence of SEQ ID NO: 152.
- HCDR1 heavy chain complementarity determining region 1
- LCDR1 light chain complementarity determining region 1
- the Fab that immunospecifically binds to TIGIT can comprise a Fab heavy chain comprising a variable region comprising the amino acid sequence of SEQ ID NO: 145 and a Fab light chain comprising a variable region comprising the amino acid sequence of SEQ ID NO: 150.
- the Fab that immunospecifically binds to TIGIT can comprise a Fab heavy chain comprising a variable region comprising an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 145 and a Fab light chain comprising a variable region Attorney Docket No. TP385350WO1 comprising an amino acid sequence with at least 90% sequence identity to the amino acid sequence of SEQ ID NO: 150.
- the Fab that immunospecifically binds to TIGIT can comprise a Fab heavy chain comprising a variable region comprising an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 145 and a Fab light chain comprising a variable region comprising an amino acid sequence with at least 95% sequence identity to the amino acid sequence of SEQ ID NO: 150.
- the Fab that immunospecifically binds to TIGIT comprises the amino acid sequence of SEQ ID NO: 157.
- the isolated polypeptide comprising a Fab that immunospecifically binds to TIGIT can comprise an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 157.
- the isolated polypeptide comprising a Fab that immunospecifically binds to TIGIT can comprise an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 157.
- Any antibody disclosed herein can be an antibody with the isotype IgG.
- the isolated polypeptide or the antibody further comprises a label.
- nucleic acid molecules comprising, consisting essentially of, or consisting of polynucleotides encoding isolated polypeptides comprising, consisting essentially of, or consisting of the amino acid sequence of Formula I: Z-(X-Yn- Zr)p-X, wherein Z is a hinge, X is a CH2 domain, Y is a linker, n is an integer of 1 or greater, p is an integer of 2 or greater, and r is an integer of 0 or 1.
- the nucleic acid molecules can comprise polynucleotides that encode a hinge (Z) comprising the amino acid sequence of SEQ ID NO: 18.
- the polynucleotides can encode a hinge (Z) comprising an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 18.
- the polynucleotides can encode a hinge (Z) comprising an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 18.
- the polynucleotides encoding the hinge (Z) comprise SEQ ID NO: 22.
- the nucleic acid molecules can comprise polynucleotides that encode a polypeptide that comprises, consists essentially of, or consists of (X -Yn-Zr)p, wherein the hinge (Z) comprises the amino acid sequence of SEQ ID NO: 48.
- the polynucleotides can encode a hinge (Z) comprising an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 48.
- the polynucleotides can encode a hinge (Z) comprising an amino acid Attorney Docket No. TP385350WO1 sequence with at least 95% sequence identity to SEQ ID NO: 48.
- the polynucleotides encoding the hinge (Z) comprise SEQ ID NO: 51.
- the nucleic acid molecules can comprise polynucleotides that encode a polypeptide that comprises, consists essentially of, or consists of (X-Yn-Zr), wherein the hinge (Z) comprises the amino acid sequence of SEQ ID NO: 102.
- the polynucleotides can encode a hinge (Z) comprising an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 102.
- the polynucleotides can encode a hinge (Z) comprising an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 102.
- the polynucleotides encoding the hinge (Z) comprise SEQ ID NO: 101.
- the polynucleotides encoding a polypeptide comprising, consisting essentially of, or consisting of (X-Yn-Zr)p can encode a CH2 domain (X) comprising the amino acid sequence of SEQ ID NO: 19.
- the polynucleotides can encode a CH2 domain (X) comprising an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 19.
- the polynucleotides can encode a CH2 domain (X) comprising an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 19.
- the polynucleotides encoding the CH2 domain (X) comprise SEQ ID NO: 23 or SEQ ID NO: 178.
- the nucleic acid molecules encoding a polypeptide comprising, consisting essentially of, or consisting of (X-Yn-Zr)p can comprise polynucleotides that encode a CH2 domain (X) comprising the amino acid sequence of SEQ ID NO: 49.
- the polynucleotides can encode a CH2 domain (X) comprising an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 49.
- the polynucleotides can encode a CH2 domain (X) comprising an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 49.
- the polynucleotides encoding the CH2 domain (X) comprise SEQ ID NO: 62. [00193]
- the polynucleotides encoding a polypeptide comprising, consisting essentially of, or consisting of (X-Yn-Zr)p can encode a CH2 domain (X) comprising the amino acid sequence of SEQ ID NO: 102.
- the polynucleotides can encode a CH2 domain (X) comprising an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 102.
- the polynucleotides can encode a CH2 domain (X) comprising an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 102.
- the polynucleotides encoding the CH2 domain (X) comprise SEQ ID NO: 101.
- the nucleic acid molecules encoding a polypeptide comprising, consisting essentially of, or consisting of (X-Yn-Zr)p can comprise polynucleotides that encode an Attorney Docket No.
- TP385350WO1 isolated polypeptide comprising one or more linkers (Y) comprising the amino acid sequence of GS, GGS, SEQ ID NO: 14, SEQ ID NO: 38, SEQ ID NO: 43, or SEQ ID NO: 44.
- the polynucleotide can encode one or more linkers (Y) comprising GS.
- the polynucleotide can encode one or more linkers (Y) comprising GGS.
- the polynucleotide can encode one or more linkers (Y) comprising SEQ ID NO: 14.
- the polynucleotide can encode one or more linkers (Y) comprising SEQ ID NO: 38.
- the polynucleotide can encode one or more linkers (Y) comprising SEQ ID NO: 43.
- the polynucleotide can encode one or more linkers (Y) comprising an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 43.
- the polynucleotide can encode one or more linkers (Y) comprising SEQ ID NO: 44.
- the polynucleotide can encode one or more linkers (Y) comprising an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 44.
- the polynucleotide encoding the one or more linkers (Y) comprise SEQ ID NO: 46.
- the polynucleotide can encode an isolated polypeptide comprising one linker (Y), such that n is 1.
- the polynucleotide can encode an isolated polypeptide comprising two linkers (Y), such that n is 2.
- the polynucleotide can encode an isolated polypeptide comprising three linkers (Y), such that n is 3.
- the polynucleotide can encode an isolated polypeptide comprising four linkers (Y), such that n is 4.
- the polynucleotide can encode an isolated polypeptide comprising five linkers (Y), such that n is 5.
- the polynucleotide can encode an isolated polypeptide comprising two or more regions comprising a CH2-linker region ((X-Y n ) p ), such that p is 2 or greater.
- the polynucleotide can encode an isolated polypeptide comprising two CH2-linker regions ((X- Yn)p), such that p is 2.
- the polynucleotide can encode an isolated polypeptide comprising three CH2-linker regions ((X-Y n ) p ), such that p is 3.
- the polynucleotide can encode an isolated polypeptide comprising four CH2-linker regions ((X-Y n ) p ), such that p is 4.
- the polynucleotide can encode an isolated polypeptide comprising five CH2-linker regions ((X- Yn)p), such that p is 5.
- the polynucleotide can encode an isolated polypeptide comprising two or more regions comprising a CH2-linker-hinge region ((X-Yn-Zr)p), such that p is 2 or greater.
- the polynucleotide can encode an isolated polypeptide comprising two CH2-linker-hinge regions ((X-Y n -Z r ) p ), such that p is 2.
- the polynucleotide can encode an isolated polypeptide comprising three CH2-linker-hinge regions ((X-Y n -Z r ) p ), such that p is 3.
- the polynucleotide can encode an isolated polypeptide comprising four CH2-linker-hinge regions ((X-Yn-Zr)p), Attorney Docket No. TP385350WO1 such that p is 4.
- the polynucleotide can encode an isolated polypeptide comprising five CH2- linker-hinge regions ((X-Yn-Zr)p), such that p is 5.
- the nucleic acid molecule comprises a polynucleotide encoding an isolated polypeptide comprising, consisting essentially of, or consisting of: Z (hinge) comprising the amino acid sequence of SEQ ID NO: 18, X (CH2 domain) comprising the amino acid sequence of SEQ ID NO: 19, Y (linker) comprising the amino acid sequence of SEQ ID NO: 44, wherein n is 1, and p is 2.
- the polynucleotide encoding the hinge (X) comprises SEQ ID NO: 22 and the polynucleotide encoding the CH2 domain (X) comprises SEQ ID NO: 23 or SEQ ID NO: 178.
- the nucleic acid molecule comprises a polynucleotide encoding an isolated polypeptide comprising, consisting essentially of, or consisting of: Z (hinge) comprising the amino acid sequence of SEQ ID NO: 48, X (CH2 domain) comprising the amino acid sequence of SEQ ID NO: 49, Y (linker) comprising the amino acid sequence of SEQ ID NO: 44, wherein n is 1, and p is 2.
- the polynucleotide encoding the hinge (X) comprises SEQ ID NO: 51 and the polynucleotide encoding the CH2 domain (X) comprises SEQ ID NO: 62.
- the nucleic acid molecule comprises a polynucleotide encoding an isolated polypeptide comprising, consisting essentially of, or consisting of: Z (hinge) comprising the amino acid sequence of SEQ ID NO: 102, X (CH2 domain) comprising the amino acid sequence of SEQ ID NO: 104, Y (linker) comprising the amino acid sequence of SEQ ID NO: 44 wherein n is 1, r is 0 or 1, and p is 2.
- the polynucleotide encoding the hinge (X) comprises SEQ ID NO: 101 and the polynucleotide encoding the CH2 domain (X) comprises SEQ ID NO: 103.
- the polynucleotide can encode an isolated polypeptide comprising two additional CH2 domains N-terminal to the Fc domain connected via a hinge and optionally one or more linkers, wherein the isolated polypeptide comprises the amino acid sequence of SEQ ID NO: 52.
- the polynucleotide encodes an isolated polypeptide comprising two additional CH2 domains N-terminal to the Fc domain connected via a hinge and optionally one or more linkers, the isolated polypeptide comprising SEQ ID NO: 52.
- the polynucleotide can encode an isolated polypeptide comprising two additional CH2 domains N-terminal to the Fc domain connected via a hinge and optionally one or more linkers, the isolated polypeptide comprising an amino acid sequence with at least 90% identity to SEQ ID Attorney Docket No. TP385350WO1 NO: 52.
- the polynucleotide can encode an isolated polypeptide comprising two additional CH2 domains N-terminal to the Fc domain connected via a hinge and optionally one or more linkers, the isolated polypeptide comprising an amino acid sequence with at least 95% identity to SEQ ID NO: 52.
- the polynucleotide encoding an isolated polypeptide comprising two additional CH2 domains N-terminal to the Fc domain connected via a hinge and optionally one or more linkers comprises SEQ ID NO: 53.
- the polynucleotide encodes an isolated polypeptide comprising two additional CH2 domains N-terminal to the Fc domain connected via a hinge and optionally one or more linkers and comprises “LFLEPS” mutations within the lower hinge and CH2 domains.
- the “LFLEPS” mutations can comprise the following amino acid substitutions: L234F, L235E and P331S.
- the polynucleotide encodes an isolated polypeptide comprising two additional CH2 domains N- terminal to the Fc domain connected via a hinge and optionally one or more linkers and comprises “LFLEPS” mutations within the lower hinge and CH2 domains, the isolated polypeptide comprising SEQ ID NO: 54.
- the polynucleotide can encode an isolated polypeptide comprising two additional CH2 domains N-terminal to the Fc domain connected via a hinge and optionally one or more linkers and comprises “LFLEPS” mutations within the lower hinge and CH2 domains, the isolated polypeptide comprising an amino acid sequence with at least 90% identity to SEQ ID NO: 54.
- the polynucleotide can encode an isolated polypeptide comprising two additional CH2 domains N-terminal to the Fc domain connected via a hinge and optionally one or more linkers and comprises “LFLEPS” mutations within the lower hinge and CH2 domains, the isolated polypeptide comprising an amino acid sequence with at least 95% identity to SEQ ID NO: 54.
- the polynucleotide encoding an isolated polypeptide comprising two additional CH2 domains N-terminal to the Fc domain connected via a hinge and optionally one or more linkers and comprises “LFLEPS” mutations within the lower hinge and CH2 domains comprises SEQ ID NO: 55.
- the polynucleotide can encode any isolated polypeptide disclosed herein and can further encode a second polypeptide, wherein the isolated polypeptide and the second polypeptide share the same amino acid sequence.
- the polynucleotide can encode any isolated polypeptide disclosed herein that further comprises a CH3 domain. In some embodiments the polynucleotide encodes a CH3 domain comprising the amino acid sequence of SEQ ID NO: 20.
- the polynucleotide can Attorney Docket No. TP385350WO1 encode a CH3 domain comprising an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 20.
- the polynucleotide can encode a CH3 domain comprising an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 20.
- the polynucleotide encoding the CH3 domain comprises SEQ ID NO: 24 or SEQ ID NO: 179.
- the polynucleotide encodes an isolated polypeptide comprising a CH3 domain, the isolated polypeptide comprising SEQ ID NO: 106.
- the polynucleotide can encode an isolated polypeptide comprising a CH3 domain, the isolated polypeptide comprising an amino acid sequence with at least 90% identity to SEQ ID NO: 106.
- the polynucleotide can encode an isolated polypeptide comprising a CH3 domain, the isolated polypeptide comprising an amino acid sequence with at least 95% identity to SEQ ID NO: 106.
- in the polynucleotide encoding an isolated polypeptide comprising a CH3 domain comprises SEQ ID NO: 105.
- the polynucleotide encodes an isolated polypeptide comprising a CH3 domain, the isolated polypeptide comprising SEQ ID NO: 141.
- the polynucleotide can encode an isolated polypeptide comprising a CH3 domain, the isolated polypeptide comprising an amino acid sequence with at least 90% identity to SEQ ID NO: 141.
- the polynucleotide can encode an isolated polypeptide comprising a CH3 domain, the isolated polypeptide comprising an amino acid sequence with at least 95% identity to SEQ ID NO: 141.
- in the polynucleotide encoding an isolated polypeptide comprising a CH3 domain comprises SEQ ID NO: 140.
- the polynucleotide can encode any antibody comprising any isolated polypeptide disclosed herein that further comprises a Fab.
- the polynucleotide can encode a Fab comprising a CH1 domain.
- the polynucleotide can encode a CH1 domain comprising the amino acid sequence of SEQ ID NO: 17.
- the polynucleotide can encode a CH1 domain comprising an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 17.
- the polynucleotide can encode a CH1 domain comprising amino acid sequence with at least 95% sequence identity to SEQ ID NO: 17.
- the polynucleotide encoding a CH1 domain can comprise SEQ ID NO: 21, SEQ ID NO: 176, or SEQ ID NO: 177.
- the polynucleotide can encode a Fab comprising a Fab heavy chain and a Fab light chain that pair to form a binding domain.
- the polynucleotide can encode any antibody comprising any isolated polypeptide disclosed herein that further comprises a Fab.
- the polynucleotide can encode a Fab comprising a CH1 domain.
- the polynucleotide can encode a CH1 domain comprising the amino acid sequence of SEQ ID NO: 100.
- the polynucleotide can encode a CH1 domain comprising an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 100.
- the polynucleotide can encode a CH1 domain comprising amino acid sequence with at least 95% sequence identity to SEQ ID NO: 100.
- the polynucleotide encoding a CH1 domain can comprise SEQ ID NO: 99.
- the polynucleotide can encode a Fab comprising a Fab heavy chain and a Fab light chain that pair to form a binding domain.
- the polynucleotide can encode any antibody comprising any isolated polypeptide disclosed herein that further comprises a Fab.
- the polynucleotide can encode a Fab comprising a CH1 domain.
- the polynucleotide can encode a CH1 domain comprising the amino acid sequence of SEQ ID NO: 160.
- the polynucleotide can encode a CH1 domain comprising an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 160.
- the polynucleotide can encode a CH1 domain comprising amino acid sequence with at least 95% sequence identity to SEQ ID NO: 160.
- the polynucleotide encoding a CH1 domain can comprise SEQ ID NO: 159.
- the polynucleotide can encode a Fab comprising a Fab heavy chain and a Fab light chain that pair to form a binding domain. [00210]
- the polynucleotide can encode a Fab that immunospecifically binds to one or more target molecules.
- the polynucleotide can encode a Fab that immunospecifically binds to Parkin, OCT4, IDO1, FLAG-tag, pERK1/2, PSD-95, or TIGIT, or the Fab can be a rabbit anti-mouse (RAM) IgG secondary antibody.
- the polynucleotide can encode a Fab that immunospecifically binds to Parkin.
- the polynucleotide can encode a Fab that immunospecifically binds to Parkin, the Fab comprising a Fab heavy chain comprising a heavy chain complementarity determining region 1 (HCDR1) comprising the amino acid sequence of SEQ ID NO: 4, a HCDR2 comprising the amino acid sequence of SEQ ID NO: 5, and a HCDR3 comprising the amino acid sequence of SEQ ID NO: 6.
- HCDR1 heavy chain complementarity determining region 1
- the polynucleotide can encode a Fab that immunospecifically binds to Parkin, the Fab comprising a Fab heavy chain comprising a variable region comprising the amino acid sequence of SEQ ID NO: 7.
- the polynucleotide can encode a Fab heavy chain comprising a variable region comprising an amino acid sequence with at least 90% sequence Attorney Docket No. TP385350WO1 identity to SEQ ID NO: 7.
- the polynucleotide can encode a Fab heavy chain comprising a variable region comprising an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 7.
- the polynucleotide can encode a Fab that immunospecifically binds to Parkin, the Fab comprising a Fab heavy chain comprising a variable region comprising the amino acid sequence of SEQ ID NO: 9.
- the polynucleotide can encode a Fab heavy chain comprising a variable region comprising an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 9.
- the polynucleotide can encode a Fab heavy chain comprising a variable region comprising an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 9.
- the polynucleotide comprises SEQ ID NO: 8.
- the polynucleotide can encode a Fab that immunospecifically binds to Parkin, the Fab comprising a Fab light chain comprising a light chain complementarity determining region 1 (LCDR1) comprising the amino acid sequence of SEQ ID NO: 13, a LCDR2 comprising the amino acid sequence RAS, and a LCDR3 comprising the amino acid sequence of SEQ ID NO: 15.
- LCDR1 light chain complementarity determining region 1
- the polynucleotide can encode a Fab that immunospecifically binds to Parkin, the Fab comprising a Fab light chain comprising a variable region comprising the amino acid sequence of SEQ ID NO: 16.
- the polynucleotide can encode a Fab light chain comprising a variable region comprising an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 16.
- the polynucleotide can encode a Fab light chain comprising a variable region comprising an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 16.
- the polynucleotide can encode a Fab that immunospecifically binds to Parkin, the Fab comprising a Fab light chain comprising a variable region comprising the amino acid sequence of SEQ ID NO: 12.
- the polynucleotide can encode a Fab light chain comprising a variable region comprising an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 12.
- the polynucleotide can encode a Fab light chain comprising a variable region comprising an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 12.
- the polynucleotide in the polynucleotide encoding a Fab that immunospecifically binds to Parkin, the polynucleotide comprises SEQ ID NO: 11. Attorney Docket No.
- the polynucleotide can encode a Fab that immunospecifically binds to Parkin, the Fab comprising a Fab heavy chain comprising a heavy chain complementarity determining region 1 (HCDR1) comprising the amino acid sequence of SEQ ID NO: 4, a HCDR2 comprising the amino acid sequence of SEQ ID NO: 5, and a HCDR3 comprising the amino acid sequence of SEQ ID NO: 6, and a Fab light chain comprising a light chain complementarity determining region 1 (LCDR1) comprising the amino acid sequence of SEQ ID NO: 13, a LCDR2 comprising the amino acid sequence RAS, and a LCDR3 comprising the amino acid sequence of SEQ ID NO: 15.
- HCDR1 heavy chain complementarity determining region 1
- LCDR1 light chain complementarity determining region 1
- LCDR2 comprising the amino acid sequence RAS
- LCDR3 comprising the amino acid sequence of SEQ ID NO: 15.
- the polynucleotide can encode a Fab that immunospecifically binds to Parkin, the Fab comprising a Fab heavy chain comprising a variable region comprising the amino acid sequence of SEQ ID NO: 7 and Fab light chain comprising a variable region comprising the amino acid sequence of SEQ ID NO: 16.
- the polynucleotide can encode a Fab heavy chain comprising a variable region comprising an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 7 and a Fab light chain comprising a variable region comprising an amino acid sequence with at least 90% sequence identity to the amino acid sequence of SEQ ID NO: 16.
- the polynucleotide can encode a Fab heavy chain comprising a variable region comprising an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 7 and a Fab light chain comprising a variable region comprising an amino acid sequence with at least 95% sequence identity to the amino acid sequence of SEQ ID NO: 16.
- the polynucleotide can encode a Fab that immunospecifically binds to Parkin, the Fab comprising a Fab heavy chain comprising a variable region comprising the amino acid sequence of SEQ ID NO: 9 and a Fab light chain comprising a variable region comprising the amino acid sequence of SEQ ID NO: 12.
- the polynucleotide can encode a Fab heavy chain comprising a variable region comprising an amino acid sequence with at least 90% sequence identity to the amino acid sequence of SEQ ID NO: 9 and Fab light chain comprising a variable region comprising an amino acid sequence with at least 90% sequence identity to the amino acid sequence of SEQ ID NO: 12.
- the polynucleotide can encode a Fab heavy chain comprising a variable region comprising an amino acid sequence with at least 95% sequence identity to the amino acid sequence of SEQ ID NO: 9 and Fab light chain comprising a variable region comprising an amino acid sequence with at least 95% sequence identity to the amino acid sequence of SEQ ID NO: 12.
- the polynucleotide encoding a Fab that immunospecifically binds to Parkin, the polynucleotide comprises SEQ ID NO: 8 and SEQ ID NO: 11.
- the polynucleotide can encode an antibody comprising a Fab that immunospecifically binds to Parkin, the Fab comprising the amino acid sequence of SEQ ID NO: 3.
- the polynucleotide can encode a Fab comprising an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 3.
- the polynucleotide can encode a Fab comprising an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 3.
- the polynucleotide in the polynucleotide encoding a Fab that immunospecifically binds to Parkin, the polynucleotide comprises SEQ ID NO: 2.
- the polynucleotide can encode a Fab that immunospecifically binds to OCT4.
- the polynucleotide can encode a Fab that immunospecifically binds to OCT4, the Fab comprising a heavy chain complementarity determining region 1 (HCDR1) comprising the amino acid sequence of SEQ ID NO: 29, a HCDR2 comprising the amino acid sequence of SEQ ID NO: 30, and a HCDR3 comprising the amino acid sequence of SEQ ID NO: 31.
- HCDR1 heavy chain complementarity determining region 1
- the polynucleotide can encode a Fab that immunospecifically binds to OCT4, the Fab comprising a Fab heavy chain comprising a variable region comprising the amino acid sequence of SEQ ID NO: 32.
- the polynucleotide can encode a Fab heavy chain comprising a variable region comprising an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 32.
- the polynucleotide can encode a Fab heavy chain comprising a variable region comprising an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 32.
- the polynucleotide can encode a Fab that immunospecifically binds to OCT4, the Fab comprising a Fab heavy chain comprising a variable region comprising the amino acid sequence of SEQ ID NO: 34.
- the polynucleotide can encode a Fab heavy chain comprising a variable region comprising an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 34.
- the polynucleotide can encode a Fab heavy chain comprising a variable region comprising an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 34.
- the polynucleotide in the polynucleotide encoding a Fab that immunospecifically binds to OCT4, the polynucleotide comprises SEQ ID NO: 33.
- the polynucleotide can encode a Fab that immunospecifically binds to OCT4, the Fab comprising a Fab light chain comprising a light chain complementarity Attorney Docket No. TP385350WO1 determining region 1 (LCDR1) comprising the amino acid sequence of SEQ ID NO: 37, a LCDR2 comprising the amino acid sequence GAS, and a LCDR3 comprising the amino acid sequence of SEQ ID NO: 39.
- LCDR1 determining region 1
- the polynucleotide can encode a Fab that immunospecifically binds to OCT4, the Fab comprising a Fab light chain comprising a variable region comprising the amino acid sequence of SEQ ID NO: 40.
- the polynucleotide can encode a Fab light chain comprising a variable region comprising an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 40.
- the polynucleotide can encode a Fab light chain comprising a variable region comprising an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 40.
- the polynucleotide can encode a Fab that immunospecifically binds to OCT4, the Fab comprising a Fab light chain comprising the amino acid sequence of SEQ ID NO: 36.
- the polynucleotide can encode a Fab light chain comprising a variable region comprising an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 36.
- the polynucleotide can encode a Fab light chain comprising a variable region comprising an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 36.
- the polynucleotide comprises SEQ ID NO: 35.
- the polynucleotide can encode a Fab that immunospecifically binds to OCT4, the Fab comprising a Fab heavy chain comprising a heavy chain complementarity determining region 1 (HCDR1) comprising the amino acid sequence of SEQ ID NO: 29, a HCDR2 comprising the amino acid sequence of SEQ ID NO: 30, and a HCDR3 comprising the amino acid sequence of SEQ ID NO: 31, and a Fab light chain comprising a light chain complementarity determining region 1 (LCDR1) comprising the amino acid sequence of SEQ ID NO: 37, a LCDR2 comprising the amino acid sequence GAS, and a LCDR3 comprising the amino acid sequence of SEQ ID NO: 39.
- HCDR1 heavy chain complementarity determining region 1
- LCDR3 light chain complementarity determining region 1
- the polynucleotide can encode a Fab that immunospecifically binds to OCT4, the Fab comprising a Fab heavy chain comprising a variable region comprising the amino acid sequence of SEQ ID NO: 32 and Fab light chain comprising a variable region comprising the amino acid sequence of SEQ ID NO: 40.
- the polynucleotide can encode a Fab heavy chain comprising a variable region comprising an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 32 and a Fab light chain comprising a variable Attorney Docket No. TP385350WO1 region comprising an amino acid sequence with at least 90% sequence identity to the amino acid sequence of SEQ ID NO: 40.
- the polynucleotide can encode a Fab heavy chain comprising a variable region comprising an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 32 and a Fab light chain comprising a variable region comprising an amino acid sequence with at least 95% sequence identity to the amino acid sequence of SEQ ID NO: 40.
- the polynucleotide can encode a Fab that immunospecifically binds to OCT4, the Fab comprising a Fab heavy chain comprising a variable region comprising the amino acid sequence of SEQ ID NO: 34 and a Fab light chain comprising a variable region comprising the amino acid sequence of SEQ ID NO: 36.
- the polynucleotide can encode a Fab heavy chain comprising a variable region comprising an amino acid sequence with at least 90% sequence identity to the amino acid sequence of SEQ ID NO: 34 and Fab light chain comprising a variable region comprising an amino acid sequence with at least 90% sequence identity to the amino acid sequence of SEQ ID NO: 36.
- the polynucleotide can encode a Fab heavy chain comprising a variable region comprising an amino acid sequence with at least 95% sequence identity to the amino acid sequence of SEQ ID NO: 34 and Fab light chain comprising a variable region comprising an amino acid sequence with at least 95% sequence identity to the amino acid sequence of SEQ ID NO: 36.
- the polynucleotide in the polynucleotide encoding a Fab that immunospecifically binds to OCT4, the polynucleotide comprises SEQ ID NO: 33 and SEQ ID NO: 35.
- the polynucleotide can encode an antibody comprising a Fab that immunospecifically binds to OCT4, the Fab comprising the amino acid sequence of SEQ ID NO: 28.
- the polynucleotide can encode a Fab comprising an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 28.
- the polynucleotide can encode a Fab comprising an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 28.
- the polynucleotide in the polynucleotide encoding a Fab that immunospecifically binds to OCT4, the polynucleotide comprises SEQ ID NO: 27. [00231] In some embodiments, the polynucleotide can encode a Fab that immunospecifically binds to IDO1. The polynucleotide can encode a Fab that immunospecifically binds to IDO1, the Fab comprising a Fab heavy chain comprising a heavy chain complementarity determining region 1 (HCDR1) comprising the amino acid Attorney Docket No.
- HCDR1 heavy chain complementarity determining region 1
- the polynucleotide can encode a Fab that immunospecifically binds to IDO1, the Fab comprising a Fab heavy chain comprising a variable region comprising the amino acid sequence of SEQ ID NO: 64.
- the polynucleotide can encode a Fab heavy chain comprising a variable region comprising an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 64.
- the polynucleotide can encode a Fab heavy chain comprising a variable region comprising an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 64.
- the polynucleotide can encode a Fab that immunospecifically binds IDO1, the Fab comprising a Fab light chain comprising a light chain complementarity determining region 1 (LCDR1) comprising the amino acid sequence of SEQ ID NO: 72, a LCDR2 comprising the amino acid sequence of YAS, and a LCDR3 comprising the amino acid sequence of SEQ ID NO: 73.
- LCDR1 light chain complementarity determining region 1
- the polynucleotide can encode a Fab that immunospecifically binds IDO1, the Fab comprising a Fab light chain comprising a variable region comprising the amino acid sequence of SEQ ID NO: 71.
- the polynucleotide can encode a Fab light chain comprising a variable region comprising an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 71.
- the polynucleotide can encode a Fab light chain comprising a variable region comprising an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 71.
- the polynucleotide can encode a Fab that immunospecifically binds to IDO1, the Fab comprising a Fab heavy chain comprising a heavy chain complementarity determining region 1 (HCDR1) comprising the amino acid sequence of SEQ ID NO: 66, a HCDR2 comprising the amino acid sequence of SEQ ID NO: 67, and a HCDR3 comprising the amino acid sequence of SEQ ID NO: 68, and a Fab light chain comprising a light chain complementarity determining region 1 (LCDR1) comprising the amino acid sequence of SEQ ID NO: 72, a LCDR2 comprising the amino acid sequence of YAS, and a LCDR3 comprising the amino acid sequence of SEQ ID NO: 73.
- HCDR1 heavy chain complementarity determining region 1
- LCDR1 light chain complementarity determining region 1
- the polynucleotide can encode a Fab that immunospecifically binds to IDO1, the Fab comprising a Fab heavy chain comprising a variable region comprising the amino acid sequence of SEQ ID NO: 65 and a Fab light chain comprising a variable region Attorney Docket No. TP385350WO1 comprising the amino acid sequence of SEQ ID NO: 71.
- the polynucleotide can encode a Fab heavy chain comprising a variable region comprising an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 65 and a Fab light chain comprising a variable region comprising an amino acid sequence with at least 90% sequence identity to the amino acid sequence of SEQ ID NO: 71.
- the polynucleotide can encode a Fab heavy chain comprising a variable region comprising an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 65 and a Fab light chain comprising a variable region comprising an amino acid sequence with at least 95% sequence identity to the amino acid sequence of SEQ ID NO: 71.
- the polynucleotide in the polynucleotide encoding a Fab that immunospecifically binds to IDO1, the polynucleotide comprises SEQ ID NO: 64 and SEQ ID NO: 70.
- the polynucleotide can encode an antibody comprising a Fab that immunospecifically binds to IDO1, the Fab comprising the amino acid sequence of SEQ ID NO: 79.
- the polynucleotide can encode a Fab comprising an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 79.
- the polynucleotide can encode a Fab comprising an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 79.
- the polynucleotide comprises SEQ ID NO: 78.
- the polynucleotide can encode a Fab that immunospecifically binds to FLAG-tag, the Fab comprising a Fab heavy chain comprising a variable region comprising the amino acid sequence of SEQ ID NO: 162.
- the polynucleotide can encode a Fab heavy chain comprising a variable region comprising an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 162.
- the polynucleotide can encode a Fab heavy chain comprising a variable region comprising an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 162.
- the polynucleotide can encode a Fab that immunospecifically binds FLAG-tag, the Fab comprising a Fab light chain comprising a light chain complementarity determining region 1 (LCDR1) comprising the amino acid sequence of SEQ ID NO: 168, a LCDR2 comprising the amino acid sequence of YAS, and a LCDR3 comprising the amino acid sequence of SEQ ID NO: 169.
- the polynucleotide can encode a Fab that immunospecifically binds FLAG-tag, the Fab comprising a Fab light chain comprising a variable region comprising the Attorney Docket No. TP385350WO1 amino acid sequence of SEQ ID NO: 167.
- the polynucleotide can encode a Fab light chain comprising a variable region comprising an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 167.
- the polynucleotide can encode a Fab light chain comprising a variable region comprising an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 167.
- the polynucleotide can encode a Fab that immunospecifically binds to FLAG-tag, the Fab comprising a Fab heavy chain comprising a heavy chain complementarity determining region 1 (HCDR1) comprising the amino acid sequence of SEQ ID NO: 163, a HCDR2 comprising the amino acid sequence of SEQ ID NO: 164, and a HCDR3 comprising the amino acid sequence of SEQ ID NO: 165, and a Fab light chain comprising a light chain complementarity determining region 1 (LCDR1) comprising the amino acid sequence of SEQ ID NO: 168, a LCDR2 comprising the amino acid sequence of YAS, and a LCDR3 comprising the amino acid sequence of SEQ ID NO: 169.
- HCDR1 heavy chain complementarity determining region 1
- LCDR1 light chain complementarity determining region 1
- the polynucleotide can encode a Fab that immunospecifically binds to FLAG-tag, the Fab comprising a Fab heavy chain comprising a variable region comprising the amino acid sequence of SEQ ID NO: 162 and a Fab light chain comprising a variable region comprising the amino acid sequence of SEQ ID NO: 167.
- the polynucleotide can encode a Fab heavy chain comprising a variable region comprising an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 162 and a Fab light chain comprising a variable region comprising an amino acid sequence with at least 90% sequence identity to the amino acid sequence of SEQ ID NO: 167.
- the polynucleotide can encode a Fab heavy chain comprising a variable region comprising an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 162 and a Fab light chain comprising a variable region comprising an amino acid sequence with at least 95% sequence identity to the amino acid sequence of SEQ ID NO: 167.
- the polynucleotide in the polynucleotide encoding a Fab that immunospecifically binds to FLAG-tag, the polynucleotide comprises SEQ ID NO: 181 and SEQ ID NO: 166.
- the polynucleotide can encode an antibody comprising a Fab that immunospecifically binds to FLAG-tag, the Fab comprising the amino acid sequence of SEQ ID NO: 175.
- the polynucleotide can encode a Fab comprising an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 175.
- the polynucleotide can encode a Fab comprising an amino acid sequence with at least 95% Attorney Docket No. TP385350WO1 sequence identity to SEQ ID NO: 175.
- the polynucleotide comprises SEQ ID NO: 174.
- the polynucleotide can encode a Fab that is a rabbit anti-mouse IgG secondary antibody (RAM).
- the polynucleotide can encode a Fab that is a RAM, the Fab comprising a Fab heavy chain comprising a heavy chain complementarity determining region 1 (HCDR1) comprising the amino acid sequence of SEQ ID NO: 127, a HCDR2 comprising the amino acid sequence of SEQ ID NO: 128, and a HCDR3 comprising the amino acid sequence of SEQ ID NO: 129.
- HCDR1 heavy chain complementarity determining region 1
- the polynucleotide can encode a Fab that is a RAM, the Fab comprising a Fab heavy chain comprising a variable region comprising the amino acid sequence of SEQ ID NO: 126.
- the polynucleotide can encode a Fab heavy chain comprising a variable region comprising an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 126.
- the polynucleotide can encode a Fab heavy chain comprising a variable region comprising an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 126.
- the polynucleotide can encode a Fab that is a RAM, the Fab comprising a Fab light chain comprising a light chain complementarity determining region 1 (LCDR1) comprising the amino acid sequence of SEQ ID NO: 132, a LCDR2 comprising the amino acid sequence of GAS, and a LCDR3 comprising the amino acid sequence of SEQ ID NO: 133.
- LCDR1 light chain complementarity determining region 1
- the polynucleotide can encode a Fab that is a RAM, the Fab comprising a Fab light chain comprising a variable region comprising the amino acid sequence of SEQ ID NO: 131.
- the polynucleotide can encode a Fab light chain comprising a variable region comprising an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 131.
- the polynucleotide can encode a Fab light chain comprising a variable region comprising an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 131.
- the polynucleotide can encode a Fab that is a RAM, the Fab comprising a Fab heavy chain comprising a heavy chain complementarity determining region 1 (HCDR1) comprising the amino acid sequence of SEQ ID NO: 127, a HCDR2 comprising the amino acid sequence of SEQ ID NO: 128, and a HCDR3 comprising the amino acid sequence of SEQ ID NO: 129, and a Fab light chain comprising a light chain complementarity determining region 1 (LCDR1) comprising the amino acid sequence of SEQ ID NO: 132, a Attorney Docket No.
- HCDR1 heavy chain complementarity determining region 1
- LCDR1 light chain complementarity determining region 1
- the polynucleotide can encode a Fab that is a RAM, the Fab comprising a Fab heavy chain comprising a variable region comprising the amino acid sequence of SEQ ID NO: 126 and a Fab light chain comprising a variable region comprising the amino acid sequence of SEQ ID NO: 131.
- the polynucleotide can encode a Fab heavy chain comprising a variable region comprising an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 126 and a Fab light chain comprising a variable region comprising an amino acid sequence with at least 90% sequence identity to the amino acid sequence of SEQ ID NO: 131.
- the polynucleotide can encode a Fab heavy chain comprising a variable region comprising an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 126 and a Fab light chain comprising a variable region comprising an amino acid sequence with at least 95% sequence identity to the amino acid sequence of SEQ ID NO: 131.
- the polynucleotide encoding a Fab that immunospecifically binds is a RAM
- the polynucleotide comprises SEQ ID NO: 125 and SEQ ID NO: 130.
- the polynucleotide can encode an antibody comprising a Fab that is a RAM, the Fab comprising the amino acid sequence of SEQ ID NO: 139.
- the polynucleotide can encode a Fab comprising an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 139.
- the polynucleotide can encode a Fab comprising an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 139.
- the polynucleotide in the polynucleotide encoding a Fab that is a RAM, the polynucleotide comprises SEQ ID NO: 138. [00251] In some embodiments, the polynucleotide can encode a Fab that immunospecifically binds to pERK1/2.
- the polynucleotide can encode a Fab that immunospecifically binds to pERK1/2, the Fab comprising a Fab heavy chain comprising a heavy chain complementarity determining region 1 (HCDR1) comprising the amino acid sequence of SEQ ID NO: 85, a HCDR2 comprising the amino acid sequence of SEQ ID NO: 86, and a HCDR3 comprising the amino acid sequence of SEQ ID NO: 87.
- the polynucleotide can encode a Fab that immunospecifically binds to pERK1/2, the Fab comprising a Fab heavy chain comprising a variable region comprising the amino acid sequence of SEQ ID NO: 84.
- the polynucleotide can encode a Fab heavy chain comprising a variable region comprising an amino acid sequence with at least 90% sequence Attorney Docket No. TP385350WO1 identity to SEQ ID NO: 84.
- the polynucleotide can encode a Fab heavy chain comprising a variable region comprising an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 84.
- the polynucleotide can encode a Fab that immunospecifically binds pERK1/2, the Fab comprising a Fab light chain comprising a light chain complementarity determining region 1 (LCDR1) comprising the amino acid sequence of SEQ ID NO: 91, a LCDR2 comprising the amino acid sequence of KVS, and a LCDR3 comprising the amino acid sequence of SEQ ID NO: 92.
- the polynucleotide can encode a Fab that immunospecifically binds pERK1/2, the Fab comprising a Fab light chain comprising a variable region comprising the amino acid sequence of SEQ ID NO: 90.
- the polynucleotide can encode a Fab light chain comprising a variable region comprising an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 90.
- the polynucleotide can encode a Fab light chain comprising a variable region comprising an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 90.
- the polynucleotide can encode a Fab that immunospecifically binds to pERK1/2, the Fab comprising a Fab heavy chain comprising a heavy chain complementarity determining region 1 (HCDR1) comprising the amino acid sequence of SEQ ID NO: 85, a HCDR2 comprising the amino acid sequence of SEQ ID NO: 86, and a HCDR3 comprising the amino acid sequence of SEQ ID NO: 87, and a Fab light chain comprising a light chain complementarity determining region 1 (LCDR1) comprising the amino acid sequence of SEQ ID NO: 91, a LCDR2 comprising the amino acid sequence of KVS, and a LCDR3 comprising the amino acid sequence of SEQ ID NO: 92.
- HCDR1 heavy chain complementarity determining region 1
- LCDR1 light chain complementarity determining region 1
- the polynucleotide can encode a Fab that immunospecifically binds to pERK1/2, the Fab comprising a Fab heavy chain comprising a variable region comprising the amino acid sequence of SEQ ID NO: 84 and a Fab light chain comprising a variable region comprising the amino acid sequence of SEQ ID NO: 90.
- the polynucleotide can encode a Fab heavy chain comprising a variable region comprising an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 84 and a Fab light chain comprising a variable region comprising an amino acid sequence with at least 90% sequence identity to the amino acid sequence of SEQ ID NO: 90.
- the polynucleotide can encode a Fab heavy chain comprising a variable region comprising an amino acid sequence with at least 95% sequence Attorney Docket No. TP385350WO1 identity to SEQ ID NO: 84 and a Fab light chain comprising a variable region comprising an amino acid sequence with at least 95% sequence identity to the amino acid sequence of SEQ ID NO: 90.
- the polynucleotide in the polynucleotide encoding a Fab that immunospecifically binds to pERK1/2, the polynucleotide comprises SEQ ID NO: 83 and SEQ ID NO: 89.
- the polynucleotide can encode an antibody comprising a Fab that immunospecifically binds to pERK1/2, the Fab comprising the amino acid sequence of SEQ ID NO: 98.
- the polynucleotide can encode a Fab comprising an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 98.
- the polynucleotide can encode a Fab comprising an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 98.
- the polynucleotide comprises SEQ ID NO: 97.
- the polynucleotide can encode a Fab that immunospecifically binds to PSD-95.
- the polynucleotide can encode a Fab that immunospecifically binds to PSD-95, the Fab comprising a Fab heavy chain comprising a heavy chain complementarity determining region 1 (HCDR1) comprising the amino acid sequence of SEQ ID NO: 111, a HCDR2 comprising the amino acid sequence of SEQ ID NO: 112, and a HCDR3 comprising the amino acid sequence of SEQ ID NO: 113.
- HCDR1 heavy chain complementarity determining region 1
- the polynucleotide can encode a Fab that immunospecifically binds to PSD-95, the Fab comprising a Fab heavy chain comprising a variable region comprising the amino acid sequence of SEQ ID NO: 110.
- the polynucleotide can encode a Fab heavy chain comprising a variable region comprising an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 110.
- the polynucleotide can encode a Fab heavy chain comprising a variable region comprising an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 110.
- the polynucleotide can encode a Fab that immunospecifically binds PSD- 95, the Fab comprising a Fab light chain comprising a light chain complementarity determining region 1 (LCDR1) comprising the amino acid sequence of SEQ ID NO: 116, a LCDR2 comprising the amino acid sequence of DTS, and a LCDR3 comprising the amino acid sequence of SEQ ID NO: 117.
- the polynucleotide can encode a Fab that immunospecifically binds PSD- 95, the Fab comprising a Fab light chain comprising a variable region comprising the amino Attorney Docket No. TP385350WO1 acid sequence of SEQ ID NO: 115.
- the polynucleotide can encode a Fab light chain comprising a variable region comprising an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 115.
- the polynucleotide can encode a Fab light chain comprising a variable region comprising an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 115.
- the polynucleotide can encode a Fab that immunospecifically binds to PSD-95, the Fab comprising a Fab heavy chain comprising a heavy chain complementarity determining region 1 (HCDR1) comprising the amino acid sequence of SEQ ID NO: 111, a HCDR2 comprising the amino acid sequence of SEQ ID NO: 112, and a HCDR3 comprising the amino acid sequence of SEQ ID NO: 113, and a Fab light chain comprising a light chain complementarity determining region 1 (LCDR1) comprising the amino acid sequence of SEQ ID NO: 116, a LCDR2 comprising the amino acid sequence of DTS, and a LCDR3 comprising the amino acid sequence of SEQ ID NO: 117.
- HCDR1 heavy chain complementarity determining region 1
- LCDR1 light chain complementarity determining region 1
- the polynucleotide can encode a Fab that immunospecifically binds to PSD-95, the Fab comprising a Fab heavy chain comprising a variable region comprising the amino acid sequence of SEQ ID NO: 110 and a Fab light chain comprising a variable region comprising the amino acid sequence of SEQ ID NO: 115.
- the polynucleotide can encode a Fab heavy chain comprising a variable region comprising an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 110 and a Fab light chain comprising a variable region comprising an amino acid sequence with at least 90% sequence identity to the amino acid sequence of SEQ ID NO: 115.
- the polynucleotide can encode a Fab heavy chain comprising a variable region comprising an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 110 and a Fab light chain comprising a variable region comprising an amino acid sequence with at least 95% sequence identity to the amino acid sequence of SEQ ID NO: 115.
- the polynucleotide in the polynucleotide encoding a Fab that immunospecifically binds to PSD-95, the polynucleotide comprises SEQ ID NO: 125 and SEQ ID NO: 130.
- the polynucleotide can encode an antibody comprising a Fab that immunospecifically binds to PSD-95, the Fab comprising the amino acid sequence of SEQ ID NO: 123.
- the polynucleotide can encode a Fab comprising an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 123.
- the polynucleotide can encode a Fab comprising an amino acid sequence with at least 95% Attorney Docket No. TP385350WO1 sequence identity to SEQ ID NO: 123.
- the polynucleotide comprises SEQ ID NO: 122.
- the polynucleotide can encode a Fab that immunospecifically binds to TIGIT.
- the polynucleotide can encode a Fab that immunospecifically binds to TIGIT, the Fab comprising a heavy chain complementarity determining region 1 (HCDR1) comprising the amino acid sequence of SEQ ID NO: 146, a HCDR2 comprising the amino acid sequence of SEQ ID NO: 147, and a HCDR3 comprising the amino acid sequence of SEQ ID NO: 148 [00266]
- the polynucleotide can encode a Fab that immunospecifically binds to TIGIT, the Fab comprising a Fab heavy chain comprising a variable region comprising the amino acid sequence of SEQ ID NO: 145.
- the polynucleotide can encode a Fab heavy chain comprising a variable region comprising an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 145.
- the polynucleotide can encode a Fab heavy chain comprising a variable region comprising an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 145.
- the polynucleotide can encode a Fab that immunospecifically binds to TIGIT, the Fab comprising a Fab light chain comprising a light chain complementarity determining region 1 (LCDR1) comprising the amino acid sequence of SEQ ID NO: 151, a LCDR2 comprising the amino acid sequence of SAS, and a LCDR3 comprising the amino acid sequence of SEQ ID NO: 152.
- LCDR1 light chain complementarity determining region 1
- the polynucleotide can encode a Fab that immunospecifically binds to TIGIT, the Fab comprising a Fab light chain comprising a variable region comprising the amino acid sequence of SEQ ID NO: 150.
- the polynucleotide can encode a Fab light chain comprising a variable region comprising an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 150.
- the polynucleotide can encode a Fab light chain comprising a variable region comprising an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 150.
- the polynucleotide can encode a Fab that immunospecifically binds to TIGIT, the Fab comprising a Fab heavy chain comprising a heavy chain complementarity determining region 1 (HCDR1) comprising the amino acid sequence of SEQ ID NO: 146, a HCDR2 comprising the amino acid sequence of SEQ ID NO: 147, and a HCDR3 comprising Attorney Docket No.
- HCDR1 heavy chain complementarity determining region 1
- HCDR2 comprising the amino acid sequence of SEQ ID NO: 147
- HCDR3 comprising Attorney Docket No.
- the polynucleotide can encode a Fab that immunospecifically binds to TIGIT, the Fab comprising a Fab heavy chain comprising a variable region comprising the amino acid sequence of SEQ ID NO: 145 and a Fab light chain comprising a variable region comprising the amino acid sequence of SEQ ID NO: 150.
- the polynucleotide can encode a Fab heavy chain comprising a variable region comprising an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 145 and a Fab light chain comprising a variable region comprising an amino acid sequence with at least 90% sequence identity to the amino acid sequence of SEQ ID NO: 150.
- the polynucleotide can encode a Fab heavy chain comprising a variable region comprising an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 145 and a Fab light chain comprising a variable region comprising an amino acid sequence with at least 95% sequence identity to the amino acid sequence of SEQ ID NO: 150.
- the polynucleotide in the polynucleotide encoding a Fab that immunospecifically binds to TIGIT, the polynucleotide comprises SEQ ID NO: 144 and SEQ ID NO: 149. [00271] In some embodiments, the polynucleotide can encode a Fab that immunospecifically binds to TIGIT, the Fab comprising the amino acid sequence of SEQ ID NO: 158. The polynucleotide can encode a Fab comprising an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 158. The polynucleotide can encode a Fab comprising an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 158.
- the polynucleotide in the polynucleotide encoding a Fab that immunospecifically binds to TIGIT, the polynucleotide comprises SEQ ID NO: 157.
- the polynucleotide can encode any antibody disclosed herein wherein the antibody has the isotype IgG.
- vectors comprising any of the herein described nucleic acid molecules that comprise polynucleotides encoding isolated polypeptides or antibodies.
- host cells comprising any of the herein disclosed vectors. Suitable host cells include eukaryotic cells and prokaryotic cells. Attorney Docket No.
- TP385350WO1 Disclosed herein are methods of producing an isolated polypeptide or antibody, the methods comprising culturing a host cell comprising any of the herein disclosed vectors under conditions suitable for expression of the isolated polypeptide or antibody and purifying the isolated polypeptide or antibody.
- antibodies comprising the isolated polypeptide comprising the amino acid sequence of Formula I: Z-(X-Y n -Z r ) p -X, wherein Z is a hinge region, X is a CH2 domain, Y is a linker, n is an integer of 1 or greater, p is an integer of 2 or greater, and r is an integer of 0 or 1 linked to a Fab domain.
- the hinge (Z) region can comprise the amino acid sequence of SEQ ID NO: 18.
- the hinge (Z) can comprise an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 18.
- the hinge (Z) can comprise an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 18.
- the hinge (Z) can comprise the amino acid sequence of SEQ ID NO: 48.
- the hinge (Z) can comprise an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 48.
- the hinge (Z) can comprise an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 48.
- the hinge (Z) can comprise the amino acid sequence of SEQ ID NO: 102.
- the hinge (Z) can comprise an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 102.
- the hinge (Z) can comprise an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 102.
- the CH2 domain (X) can comprise the amino acid sequence of SEQ ID NO: 19.
- the CH2 domain (X) can comprise an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 19.
- the CH2 domain (X) can comprise an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 19.
- the CH2 domain (X) can comprise the amino acid sequence of SEQ ID NO: 49.
- the CH2 domain (X) can comprise an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 49.
- the CH2 domain (X) can comprise an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 49.
- the CH2 domain (X) can comprise the amino acid sequence of SEQ ID NO: 104.
- the CH2 domain (X) can comprise an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 104.
- the CH2 domain (X) can comprise an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 104.
- the antibody comprising the isolated polypeptide can comprise one or more linkers (Y) comprising the amino acid sequence of GS, GGS, SEQ ID NO: 14, SEQ ID NO: 38, SEQ ID NO: 43, or SEQ ID NO: 44.
- the one or more linkers Attorney Docket No. TP385350WO1 (Y) can comprise GS.
- the one or more linkers (Y) can comprise GGS.
- the one or more linkers (Y) can comprise SEQ ID NO: 14.
- the one or more linkers (Y) can comprise SEQ ID NO: 38.
- the one or more linkers can comprise SEQ ID NO: 43.
- the one or more linkers (Y) can comprise a sequence with at least 90% sequence identity to SEQ ID NO: 43.
- the one or more linkers (Y) can comprise SEQ ID NO: 44.
- the one or more linkers (Y) can comprise a sequence with at least 90% sequence identity to SEQ ID NO: 44.
- the isolated polypeptide can comprise one linker (Y), such that n is 1.
- the isolated polypeptide can comprise two linkers (Y), such that n is 2.
- the isolated polypeptide can comprise three linkers (Y), such that n is 3.
- the isolated polypeptide can comprise four linkers (Y), such that n is 4.
- the isolated polypeptide can comprise five linkers (Y), such that n is 5.
- the antibody comprising the isolated polypeptide can comprise two or more regions comprising a CH2-linker region ((X-Y n ) p ), such that p is 2 or greater.
- the isolated polypeptide can comprise two CH2-linker regions ((X-Y n ) p ), such that p is 2.
- the isolated polypeptide can comprise three CH2-linker regions ((X-Yn)p), such that p is 3.
- the isolated polypeptide can comprise four CH2-linker regions ((X-Y n ) p ), such that p is 4.
- the isolated polypeptide can comprise five CH2-linker regions ((X-Y n ) p ), such that p is 5.
- the antibody comprising the isolated polypeptide can comprise two or more regions comprising a CH2-linker-hinge region ((X-Y n -Z r ) p ), such that p is 2 or greater.
- the isolated polypeptide can comprise two CH2-linker-hinge regions ((X-Yn-Zr)p), such that p is 2.
- the isolated polypeptide can comprise three CH2-linker-hinge regions ((X-Y n -Z r ) p ), such that p is 3.
- the isolated polypeptide can comprise four CH2- linker-hinge regions ((X-Y n -Z r ) p ), such that p is 4.
- the isolated polypeptide can comprise five CH2-linker-hinge regions ((X-Yn-Zr)p), such that p is 5.
- the antibody comprising the isolated polypeptide comprises, consists essentially of, or consists of (X-Y n -Z r ) p , wherein Z (hinge) comprises the amino acid sequence of SEQ ID NO: 18, X (CH2 domain) comprises the amino acid sequence of SEQ ID NO: 19, Y (linker) comprises the amino acid sequence of SEQ ID NO: 44, wherein n is 1, r is 0 or 1, and p is 2. [00283] In some embodiments, the antibody comprising the isolated polypeptide comprises, consists essentially of, or consists of (X-Yn-Zr)p, wherein Z (hinge) comprises the Attorney Docket No.
- TP385350WO1 amino acid sequence of SEQ ID NO: 48 X (CH2 domain) comprises the amino acid sequence of SEQ ID NO: 49, Y (linker) comprises the amino acid sequence of SEQ ID NO: 44, wherein n is 1, r is 0 or 1, and p is 2.
- the antibody comprising the isolated polypeptide comprises, consists essentially of, or consists of (X-Yn-Zr)p, wherein Z (hinge) comprises the amino acid sequence of SEQ ID NO: 102, X (CH2 domain) comprises the amino acid sequence of SEQ ID NO: 104, Y (linker) comprises the amino acid sequence of SEQ ID NO: 44, wherein n is 1, r is 0 or 1, and p is 2.
- the antibody comprising the isolated polypeptide comprises, consists essentially of, or consists of (X-Y n -Z r ) p , wherein Z (hinge) comprises the amino acid sequence of SEQ ID NO: 102, X (CH2 domain) comprises the amino acid sequence of SEQ ID NO: 104, Y (linker) comprises the amino acid sequence of SEQ ID NO: 45, wherein n is 1, r is 0 or 1, and p is 2. [00286] In some embodiments, the antibody comprising the isolated polypeptide comprises two additional CH2 domains N-terminal to the Fc domain connected via a hinge and optionally, one or more linkers.
- the isolated polypeptide comprising two additional CH2 domains N-terminal to the Fc domain connected via a hinge and optionally one or more linkers can comprise the amino acid sequence of SEQ ID NO: 52 or SEQ ID NO: 54.
- the isolated polypeptide comprising a CH3 domain comprises SEQ ID NO: 52.
- the isolated polypeptide comprising two additional CH2 domains N-terminal to the Fc domain connected via a hinge and optionally one or more linkers can comprise an amino acid sequence with at least 90% identity to SEQ ID NO: 52.
- the isolated polypeptide comprising two additional CH2 domains N-terminal to the Fc domain connected via a hinge and optionally one or more linkers can comprise an amino acid sequence with at least 95% identity to SEQ ID NO: 52.
- the antibody comprising the isolated polypeptide comprises two additional CH2 domains N-terminal to the Fc domain connected via a hinge and optionally one or more linkers and comprises “LFLEPS” mutations within the lower hinge and CH2 domains.
- the “LFLEPS” mutations can comprise the following amino acid substitutions: L234F, L235E and P331S.
- the isolated polypeptide comprising two additional CH2 domains N-terminal to the Fc domain connected via a hinge and optionally one or more linkers and comprises “LFLEPS” mutations within the lower hinge and CH2 Attorney Docket No. TP385350WO1 domains comprises SEQ ID NO: 54.
- the isolated polypeptide comprising two additional CH2 domains N-terminal to the Fc domain connected via a hinge and optionally one or more linkers and comprises “LFLEPS” mutations within the lower hinge and CH2 domains can comprise an amino acid sequence with at least 90% identity to SEQ ID NO: 54.
- the isolated polypeptide comprising two additional CH2 domains N-terminal to the Fc domain connected via a hinge and optionally one or more linkers and comprises “LFLEPS” mutations within the lower hinge and CH2 domains can comprise an amino acid sequence with at least 95% identity to SEQ ID NO: 54.
- the antibodies comprising the isolated peptide disclosed herein have a reduction of background signal of at least 1.5-fold, compared to a corresponding wild type antibody.
- the reduction of background signal is at least 1.5-fold, at least 2-fold, at least 2.5-fold, at least 3-fold, at least 3.5-fold, at least 4- fold, at least 4.5-fold or at least 5-fold compared to a corresponding wild type antibody.
- the antibodies comprising any isolated peptide disclosed herein have an increase in sensitivity or signal enhancement of at least 1.5-fold compared to a corresponding wild type antibody.
- the increase in sensitivity is at least 1.5-fold, at least 2-fold, at least 2.5-fold, at least 3-fold, at least 3.5-fold, at least 4-fold, at least 4.5-fold, at least 5-fold, at least 5.5-fold, at least 6-fold, at least 6.5- fold, at least 7-fold, at least 7.5-fold, at least 8-fold, at least 8.5-fold, at least 9-fold, at least 9.5-fold, or at least 10-fold compared to a corresponding wild type antibody.
- the antibodies comprise, consist essentially of, or consist of a heavy chain (HC) and a light chain (LC) that pair to form a binding domain comprising a heavy chain complementarity determining region 1 (HCDR1) comprising the amino acid sequence of SEQ ID NO: 4, a HCDR2 comprising the amino acid sequence of SEQ ID NO: 5, a HCDR3 comprising the amino acid sequence of SEQ ID NO: 6, a light chain complementarity determining region 1 (LCDR1) comprising the amino acid sequence of SEQ ID NO: 13, a LCDR2 comprising the amino acid sequence RAS, and a LCDR3 comprising the amino acid sequence of SEQ ID NO: 15, and wherein the heavy chain further comprises a first CH2 domain, a second CH2 domain, and a third CH2 domain, wherein the first CH2 domain and the second CH2 domain are connected by a first linker and an optional first hinge, and wherein the second CH2 domain and the third
- the antibodies that immunospecifically bind to Parkin further comprise a CH3 domain linked to the C-terminus of the third CH2 domain.
- the first CH2 domain, the second CH2 domain, and the third CH2 domain can each comprise the amino acid sequence of SEQ ID NO: 19 or SEQ ID NO: 50.
- the first CH2 domain, the second CH2 domain, and the third CH2 domain each comprise the amino acid sequence of SEQ ID NO: 19.
- the first CH2 domain, the second CH2 domain, and the third CH2 domain can each comprise an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 19.
- the first CH2 domain, the second CH2 domain, and the third CH2 domain can each comprise an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 19.
- the first CH2 domain, the second CH2 domain, and the third CH2 domain can each comprise the amino acid sequence of SEQ ID NO: 49.
- the first CH2 domain, the second CH2 domain, and the third CH2 domain can each comprise an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 49.
- the first CH2 domain, the second CH2 domain, and the third CH2 domain can each comprise an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 49.
- the first hinge and the second hinge can each comprise the amino acid sequence of SEQ ID NO: 18 or SEQ ID NO: 48. In some embodiments, the first hinge and the second hinge can each comprise the amino acid sequence of SEQ ID NO: 18. The first hinge and the second hinge can each comprise an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 18. The first hinge and the second hinge can each comprise an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 18. [00294] In some embodiments, the first hinge and the second hinge can each comprise the amino acid sequence of SEQ ID NO: 48. The first hinge and the second hinge can each comprise an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 48.
- the first hinge and the second hinge can each comprise an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 48.
- the first linker and the second linker can each comprise the amino acid sequence of GS, GGS, SEQ ID NO: 14, SEQ ID NO: 38, SEQ ID NO: 43, or SEQ ID NO: 44.
- the first and the second linkers can comprise GS.
- the first and the second linkers can comprise GGS.
- the first and the second linkers can comprise SEQ ID NO: 14.
- the first and Attorney Docket No. TP385350WO1 the second linkers can comprise SEQ ID NO: 38.
- the first and the second linkers can comprise SEQ ID NO: 43.
- the first and the second linkers can comprise a sequence with at least 90% sequence identity to SEQ ID NO: 43.
- the first and the second linkers can comprise SEQ ID NO: 44.
- the first and the second linkers can comprise a sequence with at least 90% sequence identity to SEQ ID NO: 44.
- the antibody comprises a CH3 domain comprising the amino acid sequence of SEQ ID NO: 20.
- the antibody can comprise a CH3 domain having an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 20.
- the antibody can comprise a CH3 domain having an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 20.
- the antibody comprises a heavy chain variable region having the polypeptide sequence of SEQ ID NO: 7 and a light chain variable region having the polypeptide sequence of SEQ ID NO: 16.
- the antibody can comprise a heavy chain variable region having an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 7 and a light chain variable region having an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 16.
- the antibody can comprise a heavy chain variable region having an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 7 and a light chain variable region having an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 16.
- the antibody comprises a heavy chain having a polypeptide sequence of SEQ ID NO: 3 and a light chain having the polypeptide sequence of SEQ ID NO: 12.
- the antibody can comprise a heavy chain having an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 3 and a light chain having an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 12.
- the antibody can comprise a heavy chain having an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 3 and a light chain having an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 12.
- the antibody comprises a heavy chain that is encoded by a polynucleotide sequence of SEQ ID NO: 2 and a light chain that is encoded by a polynucleotide sequence of SEQ ID NO: 11.
- the antibodies Disclosed herein are antibodies that immunospecifically bind to OCT4, wherein the antibodies comprise, consist essentially of, or consist a heavy chain (HC) and a Attorney Docket No.
- TP385350WO1 light chain that pair to form a binding domain comprising a heavy chain complementarity determining region 1 (HCDR1) comprising the amino acid sequence of SEQ ID NO: 29, a HCDR2 comprising the amino acid sequence of SEQ ID NO: 30, and a HCDR3 comprising the amino acid sequence of SEQ ID NO: 31, a light chain complementarity determining region 1 (LCDR1) comprising the amino acid sequence of SEQ ID NO: 37, a LCDR2 comprising the amino acid sequence GAS, and a LCDR3 comprising the amino acid sequence of SEQ ID NO: 39, and wherein the heavy chain further comprises a first CH2 domain, a second CH2 domain, and a third CH2 domain, wherein the first CH2 domain and the second CH2 domain are connected by a first linker and an optional first hinge, and wherein the second CH2 domain and the third CH2 domain are connected by a second linker and an optional second hinge.
- HCDR1 heavy chain complementarity determining region 1
- the antibodies that immunospecifically bind to OCT4 further comprise a CH3 domain linked to the C-terminus of the third CH2 domain.
- the first CH2 domain, the second CH2 domain, and the third CH2 domain can each comprise the amino acid sequence of SEQ ID NO: 19 or SEQ ID NO: 50.
- the first CH2 domain, the second CH2 domain, and the third CH2 domain can each comprise the amino acid sequence of SEQ ID NO: 19.
- the first CH2 domain, the second CH2 domain, and the third CH2 domain can each comprise an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 19.
- the first CH2 domain, the second CH2 domain, and the third CH2 domain can each comprise an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 19.
- the first CH2 domain, the second CH2 domain, and the third CH2 domain can each comprise the amino acid sequence of SEQ ID NO: 49.
- the first CH2 domain, the second CH2 domain, and the third CH2 domain can each comprise an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 49.
- the first CH2 domain, the second CH2 domain, and the third CH2 domain can each comprise an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 49.
- the first hinge and the second hinge can each comprise the amino acid sequence of SEQ ID NO: 18 or SEQ ID NO: 48. In some embodiments, the first hinge and the second hinge each comprise the amino acid sequence of SEQ ID NO: 18. The first hinge and the second hinge can each comprise an amino acid sequence with at least 90% sequence Attorney Docket No. TP385350WO1 identity to SEQ ID NO: 18. The first hinge and the second hinge can each comprise an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 18. [00304] In some embodiments, the first hinge and the second hinge can each comprise the amino acid sequence of SEQ ID NO: 48. The first hinge and the second hinge can each comprise an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 48.
- the first hinge and the second hinge can each comprise an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 48.
- the first linker and the second linker can each comprise the amino acid sequence of GS, GGS, SEQ ID NO: 14, SEQ ID NO: 38, SEQ ID NO: 43, or SEQ ID NO: 44.
- the first and the second linkers can comprise GS.
- the first and the second linkers can comprise GGS.
- the first and the second linkers can comprise SEQ ID NO: 14.
- the first and the second linkers can comprise SEQ ID NO: 38.
- the first and the second linkers can comprise SEQ ID NO: 43.
- the first and the second linkers can comprise a sequence with at least 90% sequence identity to SEQ ID NO: 43.
- the first and the second linkers can comprise SEQ ID NO: 44.
- the first and the second linkers can comprise a sequence with at least 90% sequence identity to SEQ ID NO: 44.
- the antibody comprises a CH3 domain comprising the amino acid sequence of SEQ ID NO: 20.
- the antibody can comprise a CH3 domain having an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 20.
- the antibody can comprise a CH3 domain having an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 20.
- the antibody comprises a heavy chain variable region having the polypeptide sequence of SEQ ID NO: 32 and a light chain variable region having the polypeptide sequence of SEQ ID NO: 40.
- the antibody can comprise a heavy chain variable region having an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 32 and a light chain variable region having an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 40.
- the antibody can comprise a heavy chain variable region having an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 32 and a light chain variable region having an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 40.
- the antibody comprises a heavy chain having a polypeptide sequence of SEQ ID NO: 28 and a light chain having the polypeptide sequence Attorney Docket No. TP385350WO1 of SEQ ID NO: 36.
- the antibody can comprise a heavy chain having an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 28 and a light chain having an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 36.
- the antibody can comprise a heavy chain having an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 28 and a light chain having an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 36.
- the antibody comprises a heavy chain that is encoded by a polynucleotide sequence of SEQ ID NO: 27 and a light chain that is encoded by a polynucleotide sequence of SEQ ID NO: 35.
- antibodies that immunospecifically bind to IDO1 wherein the antibodies comprise, consist essentially of, or consist of a heavy chain (HC) and a light chain (LC) that pair to form a binding domain comprising a heavy chain complementarity determining region 1 (HCDR1) comprising the amino acid sequence of SEQ ID NO: 66, a HCDR2 comprising the amino acid sequence of SEQ ID NO: 67, a HCDR3 comprising the amino acid sequence of SEQ ID NO: 68, a light chain complementarity determining region 1 (LCDR1) comprising the amino acid sequence of SEQ ID NO: 72, a LCDR2 comprising the amino acid sequence of YAS, and a LCDR3 comprising the amino acid sequence of SEQ ID NO: 73, and wherein the heavy chain further comprises a first CH2 domain, a second CH2 domain, and a third CH2 domain, wherein the first CH2 domain and the second CH2 domain are connected by a first linker and an optional first hinge,
- HCDR1 heavy chain complement
- the antibodies that immunospecifically bind to IDO1 further comprise a CH3 domain linked to the C-terminus of the third CH2 domain.
- the first CH2 domain, the second CH2 domain, and the third CH2 domain can each comprise the amino acid sequence of SEQ ID NO: 19 or SEQ ID NO: 49.
- the first CH2 domain, the second CH2 domain, and the third CH2 domain each comprise the amino acid sequence of SEQ ID NO: 19.
- the first CH2 domain, the second CH2 domain, and the third CH2 domain can each comprise an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 19.
- the first CH2 domain, the second CH2 domain, and the third CH2 domain can each comprise an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 19.
- Attorney Docket No. TP385350WO1 [00312]
- the first CH2 domain, the second CH2 domain, and the third CH2 domain can each comprise the amino acid sequence of SEQ ID NO: 49.
- the first CH2 domain, the second CH2 domain, and the third CH2 domain can each comprise an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 49.
- the first CH2 domain, the second CH2 domain, and the third CH2 domain can each comprise an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 49.
- the first hinge and the second hinge can each comprise the amino acid sequence of SEQ ID NO: 18 or SEQ ID NO: 48. In some embodiments, the first hinge and the second hinge can each comprise the amino acid sequence of SEQ ID NO: 18. The first hinge and the second hinge can each comprise an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 18. The first hinge and the second hinge can each comprise an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 18. [00314] In some embodiments, the first hinge and the second hinge can each comprise the amino acid sequence of SEQ ID NO: 48. The first hinge and the second hinge can each comprise an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 48.
- the first hinge and the second hinge can each comprise an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 48.
- the first linker and the second linker can each comprise the amino acid sequence of GS, GGS, SEQ ID NO: 14, SEQ ID NO: 38, SEQ ID NO: 43, or SEQ ID NO: 44.
- the first and the second linkers can comprise GS.
- the first and the second linkers can comprise GGS.
- the first and the second linkers can comprise SEQ ID NO: 14.
- the first and the second linkers can comprise SEQ ID NO: 38.
- the first and the second linkers can comprise SEQ ID NO: 43.
- the first and the second linkers can comprise a sequence with at least 90% sequence identity to SEQ ID NO: 43.
- the first and the second linkers can comprise SEQ ID NO: 44.
- the first and the second linkers can comprise a sequence with at least 90% sequence identity to SEQ ID NO: 44.
- the antibody comprises a CH3 domain comprising the amino acid sequence of SEQ ID NO: 20.
- the antibody can comprise a CH3 domain having an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 20.
- the antibody can comprise a CH3 domain having an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 20.
- the antibody comprises a heavy chain variable region having the polypeptide sequence of SEQ ID NO: 65 and a light chain variable region having the polypeptide sequence of SEQ ID NO: 71.
- the antibody can comprise a heavy chain variable region having an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 65 and a light chain variable region having an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 71.
- the antibody can comprise a heavy chain variable region having an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 65 and a light chain variable region having an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 71.
- the antibody comprises a heavy chain having a polypeptide sequence of SEQ ID NO: 75 and a light chain having the polypeptide sequence of SEQ ID NO: 77.
- the antibody can comprise a heavy chain having an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 75 and a light chain having an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 77.
- the antibody can comprise a heavy chain having an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 75 and a light chain having an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 77.
- the antibody comprises a heavy chain that is encoded by a polynucleotide sequence of SEQ ID NO: 74 and a light chain that is encoded by a polynucleotide sequence of SEQ ID NO: 76.
- antibodies that immunospecifically bind to FLAG-tag wherein the antibodies comprise, consist essentially of, or consist of a heavy chain (HC) and a light chain (LC) that pair to form a binding domain comprising a heavy chain complementarity determining region 1 (HCDR1) comprising the amino acid sequence of SEQ ID NO: 163, a HCDR2 comprising the amino acid sequence of SEQ ID NO: 164, a HCDR3 comprising the amino acid sequence of SEQ ID NO: 165, a light chain complementarity determining region 1 (LCDR1) comprising the amino acid sequence of SEQ ID NO: 168, a LCDR2 comprising the amino acid sequence of YAS, and a LCDR3 comprising the amino acid sequence of SEQ ID NO: 169, and wherein the heavy chain further comprises a first CH2 domain, a second CH2 domain, and a third CH2 domain, wherein the first CH2 domain and the second CH2 domain are connected by a first linker and an optional first
- the antibodies that immunospecifically bind to FLAG-tag further comprise a CH3 domain linked to the C-terminus of the third CH2 domain.
- the first CH2 domain, the second CH2 domain, and the third CH2 domain can each comprise the amino acid sequence of SEQ ID NO: 19 or SEQ ID NO: 49.
- the first CH2 domain, the second CH2 domain, and the third CH2 domain each comprise the amino acid sequence of SEQ ID NO: 19.
- the first CH2 domain, the second CH2 domain, and the third CH2 domain can each comprise an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 19.
- the first CH2 domain, the second CH2 domain, and the third CH2 domain can each comprise an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 19.
- the first CH2 domain, the second CH2 domain, and the third CH2 domain can each comprise the amino acid sequence of SEQ ID NO: 49.
- the first CH2 domain, the second CH2 domain, and the third CH2 domain can each comprise an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 49.
- the first CH2 domain, the second CH2 domain, and the third CH2 domain can each comprise an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 49.
- the first hinge and the second hinge can each comprise the amino acid sequence of SEQ ID NO: 18 or SEQ ID NO: 48. In some embodiments, the first hinge and the second hinge can each comprise the amino acid sequence of SEQ ID NO: 18. The first hinge and the second hinge can each comprise an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 18. The first hinge and the second hinge can each comprise an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 18. [00324] In some embodiments, the first hinge and the second hinge can each comprise the amino acid sequence of SEQ ID NO: 48. The first hinge and the second hinge can each comprise an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 48.
- the first hinge and the second hinge can each comprise an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 48.
- the first linker and the second linker can each comprise the amino acid sequence of GS, GGS, SEQ ID NO: 14, SEQ ID NO: 38, SEQ ID NO: 43, or SEQ ID NO: 44.
- the first and the second linkers can comprise GS.
- the first and the second linkers can comprise GGS.
- the first and the second linkers can comprise SEQ ID NO: 14.
- the first and Attorney Docket No. TP385350WO1 the second linkers can comprise SEQ ID NO: 38.
- the first and the second linkers can comprise SEQ ID NO: 43.
- the first and the second linkers can comprise a sequence with at least 90% sequence identity to SEQ ID NO: 43.
- the first and the second linkers can comprise SEQ ID NO: 44.
- the first and the second linkers can comprise a sequence with at least 90% sequence identity to SEQ ID NO: 44.
- the antibody comprises a CH3 domain comprising the amino acid sequence of SEQ ID NO: 20.
- the antibody can comprise a CH3 domain having an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 20.
- the antibody can comprise a CH3 domain having an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 20.
- the antibody comprises a heavy chain variable region having the polypeptide sequence of SEQ ID NO: 162 and a light chain variable region having the polypeptide sequence of SEQ ID NO: 167.
- the antibody can comprise a heavy chain variable region having an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 162 and a light chain variable region having an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 167.
- the antibody can comprise a heavy chain variable region having an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 162 and a light chain variable region having an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 167.
- the antibody comprises a heavy chain having a polypeptide sequence of SEQ ID NO: 171 and a light chain having the polypeptide sequence of SEQ ID NO: 173.
- the antibody can comprise a heavy chain having an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 171 and a light chain having an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 173.
- the antibody can comprise a heavy chain having an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 171 and a light chain having an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 173.
- the antibody comprises a heavy chain that is encoded by a polynucleotide sequence of SEQ ID NO: 170 and a light chain that is encoded by a polynucleotide sequence of SEQ ID NO: 172.
- RAM rabbit anti-mouse IgG secondary antibodies
- the antibodies comprise, consist essentially of, or consist of a heavy chain (HC) and Attorney Docket No.
- TP385350WO1 a light chain (LC) that pair to form a binding domain comprising a heavy chain complementarity determining region 1 (HCDR1) comprising the amino acid sequence of SEQ ID NO: 127, a HCDR2 comprising the amino acid sequence of SEQ ID NO: 128, a HCDR3 comprising the amino acid sequence of SEQ ID NO: 129, a light chain complementarity determining region 1 (LCDR1) comprising the amino acid sequence of SEQ ID NO: 132, a LCDR2 comprising the amino acid sequence of GAS, and a LCDR3 comprising the amino acid sequence of SEQ ID NO: 133, and wherein the heavy chain further comprises a first CH2 domain, a second CH2 domain, and a third CH2 domain, wherein the first CH2 domain and the second CH2 domain are connected by a first linker and an optional first hinge, and wherein the second CH2 domain and the third CH2 domain are connected by a second linker and an optional second hinge.
- HCDR1 heavy chain
- the rabbit anti-mouse IgG secondary antibodies further comprise a CH3 domain linked to the C- terminus of the third CH2 domain.
- the first CH2 domain, the second CH2 domain, and the third CH2 domain can each comprise the amino acid sequence of SEQ ID NO: 19 or SEQ ID NO: 49.
- the first CH2 domain, the second CH2 domain, and the third CH2 domain each comprise the amino acid sequence of SEQ ID NO: 19.
- the first CH2 domain, the second CH2 domain, and the third CH2 domain can each comprise an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 19.
- the first CH2 domain, the second CH2 domain, and the third CH2 domain can each comprise an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 19. [00332] In some embodiments, the first CH2 domain, the second CH2 domain, and the third CH2 domain can each comprise the amino acid sequence of SEQ ID NO: 49. The first CH2 domain, the second CH2 domain, and the third CH2 domain can each comprise an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 49. The first CH2 domain, the second CH2 domain, and the third CH2 domain can each comprise an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 49.
- the first hinge and the second hinge can each comprise the amino acid sequence of SEQ ID NO: 18 or SEQ ID NO: 48.
- the first hinge and the second hinge can each comprise the amino acid sequence of SEQ ID NO: 18
- the first hinge and the second hinge can each comprise an amino acid sequence with at least 90% Attorney Docket No. TP385350WO1 sequence identity to SEQ ID NO: 18.
- the first hinge and the second hinge can each comprise an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 18.
- the first hinge and the second hinge can each comprise the amino acid sequence of SEQ ID NO: 48.
- the first hinge and the second hinge can each comprise an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 48.
- the first hinge and the second hinge can each comprise an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 48.
- the first linker and the second linker can each comprise the amino acid sequence of GS, GGS, SEQ ID NO: 14, SEQ ID NO: 38, SEQ ID NO: 43, or SEQ ID NO: 44.
- the first and the second linkers can comprise GS.
- the first and the second linkers can comprise GGS.
- the first and the second linkers can comprise SEQ ID NO: 14.
- the first and the second linkers can comprise SEQ ID NO: 38.
- the first and the second linkers can comprise SEQ ID NO: 43.
- the first and the second linkers can comprise a sequence with at least 90% sequence identity to SEQ ID NO: 43.
- the first and the second linkers can comprise SEQ ID NO: 44.
- the first and the second linkers can comprise a sequence with at least 90% sequence identity to SEQ ID NO: 44.
- the antibody comprises a CH3 domain comprising the amino acid sequence of SEQ ID NO: 141.
- the antibody can comprise a CH3 domain having an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 141.
- the antibody can comprise a CH3 domain having an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 141.
- the antibody comprises a heavy chain variable region having the polypeptide sequence of SEQ ID NO: 126 and a light chain variable region having the polypeptide sequence of SEQ ID NO: 131.
- the antibody can comprise a heavy chain variable region having an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 126 and a light chain variable region having an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 131.
- the antibody can comprise a heavy chain variable region having an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 126 and a light chain variable region having an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 131.
- the antibody comprises a heavy chain having a polypeptide sequence of SEQ ID NO: 135 and a light chain having the polypeptide sequence Attorney Docket No. TP385350WO1 of SEQ ID NO: 137.
- the antibody can comprise a heavy chain having an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 135 and a light chain having an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 137.
- the antibody can comprise a heavy chain having an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 135 and a light chain having an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 137.
- the antibody comprises a heavy chain that is encoded by a polynucleotide sequence of SEQ ID NO: 134 and a light chain that is encoded by a polynucleotide sequence of SEQ ID NO: 136.
- antibodies that immunospecifically bind to pERK1/2 wherein the antibodies comprise, consist essentially of, or consist of a heavy chain (HC) and a light chain (LC) that pair to form a binding domain comprising a heavy chain complementarity determining region 1 (HCDR1) comprising the amino acid sequence of SEQ ID NO: 85, a HCDR2 comprising the amino acid sequence of SEQ ID NO: 86, a HCDR3 comprising the amino acid sequence of SEQ ID NO: 87, a light chain complementarity determining region 1 (LCDR1) comprising the amino acid sequence of SEQ ID NO: 91, a LCDR2 comprising the amino acid sequence of KVS, and a LCDR3 comprising the amino acid sequence of SEQ ID NO: 92, and wherein the heavy chain further comprises a first CH2 domain, a second CH2 domain, and a third CH2 domain, wherein the first CH2 domain and the second CH2 domain are connected by a first linker and an optional first
- the antibodies that immunospecifically bind to pERK1/2 further comprise a CH3 domain linked to the C- terminus of the third CH2 domain.
- the first CH2 domain, the second CH2 domain, and the third CH2 domain can each comprise the amino acid sequence of SEQ ID NO: 104.
- the first CH2 domain, the second CH2 domain, and the third CH2 domain each comprise the amino acid sequence of SEQ ID NO: 104.
- the first CH2 domain, the second CH2 domain, and the third CH2 domain can each comprise an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 104.
- the first CH2 domain, the second CH2 domain, and the third CH2 domain can each comprise an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 104.
- Attorney Docket No. TP385350WO1 [00342]
- the first hinge and the second hinge can each comprise the amino acid sequence of SEQ ID NO: 102.
- the first hinge and the second hinge can each comprise the amino acid sequence of SEQ ID NO: 102.
- the first hinge and the second hinge can each comprise an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 102.
- the first hinge and the second hinge can each comprise an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 102.
- the first linker and the second linker can each comprise the amino acid sequence of GS, GGS, SEQ ID NO: 14, SEQ ID NO: 38, SEQ ID NO: 43, or SEQ ID NO: 44.
- the first and the second linkers can comprise GS.
- the first and the second linkers can comprise GGS.
- the first and the second linkers can comprise SEQ ID NO: 14.
- the first and the second linkers can comprise SEQ ID NO: 38.
- the first and the second linkers can comprise SEQ ID NO: 43.
- the first and the second linkers can comprise a sequence with at least 90% sequence identity to SEQ ID NO: 43.
- the first and the second linkers can comprise SEQ ID NO: 44.
- the first and the second linkers can comprise a sequence with at least 90% sequence identity to SEQ ID NO: 44.
- the antibody comprises a CH3 domain comprising the amino acid sequence of SEQ ID NO: 106.
- the antibody can comprise a CH3 domain having an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 106.
- the antibody can comprise a CH3 domain having an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 106.
- the antibody comprises a heavy chain variable region having the polypeptide sequence of SEQ ID NO: 84 and a light chain variable region having the polypeptide sequence of SEQ ID NO: 90.
- the antibody can comprise a heavy chain variable region having an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 84 and a light chain variable region having an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 90.
- the antibody can comprise a heavy chain variable region having an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 84 and a light chain variable region having an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 90.
- the antibody comprises a heavy chain having a polypeptide sequence of SEQ ID NO: 94 and a light chain having the polypeptide sequence of SEQ ID NO: 96.
- the antibody can comprise a heavy chain having an amino acid sequence Attorney Docket No.
- the antibody can comprise a heavy chain having an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 94 and a light chain having an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 96.
- the antibody comprises a heavy chain that is encoded by a polynucleotide sequence of SEQ ID NO: 93 and a light chain that is encoded by a polynucleotide sequence of SEQ ID NO: 95.
- antibodies that immunospecifically bind to PSD-95, wherein the antibodies comprise, consist essentially of, or consist of a heavy chain (HC) and a light chain (LC) that pair to form a binding domain comprising a heavy chain complementarity determining region 1 (HCDR1) comprising the amino acid sequence of SEQ ID NO: 111, a HCDR2 comprising the amino acid sequence of SEQ ID NO: 112, a HCDR3 comprising the amino acid sequence of SEQ ID NO: 113, a light chain complementarity determining region 1 (LCDR1) comprising the amino acid sequence of SEQ ID NO: 116, a LCDR2 comprising the amino acid sequence of DTS, and a LCDR3 comprising the amino acid sequence of SEQ ID NO: 117, and wherein the heavy chain further comprises a first CH2 domain, a second CH2 domain, and a third CH2 domain, wherein the first CH2 domain and the second CH2 domain are connected by a first linker and an optional first hinge
- the antibodies that immunospecifically bind to PSD-95 further comprise a CH3 domain linked to the C-terminus of the third CH2 domain.
- the first CH2 domain, the second CH2 domain, and the third CH2 domain can each comprise the amino acid sequence of SEQ ID NO: 104.
- the first CH2 domain, the second CH2 domain, and the third CH2 domain each comprise the amino acid sequence of SEQ ID NO: 104.
- the first CH2 domain, the second CH2 domain, and the third CH2 domain can each comprise an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 104.
- the first CH2 domain, the second CH2 domain, and the third CH2 domain can each comprise an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 104.
- Attorney Docket No. TP385350WO1 [00350]
- the first hinge and the second hinge can each comprise the amino acid sequence of SEQ ID NO: 102.
- the first hinge and the second hinge can each comprise the amino acid sequence of SEQ ID NO: 102.
- the first hinge and the second hinge can each comprise an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 102.
- the first hinge and the second hinge can each comprise an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 102.
- the first linker and the second linker can each comprise the amino acid sequence of GS, GGS, SEQ ID NO: 14, SEQ ID NO: 38, SEQ ID NO: 43, or SEQ ID NO: 44.
- the first and the second linkers can comprise GS.
- the first and the second linkers can comprise GGS.
- the first and the second linkers can comprise SEQ ID NO: 14.
- the first and the second linkers can comprise SEQ ID NO: 38.
- the first and the second linkers can comprise SEQ ID NO: 43.
- the first and the second linkers can comprise a sequence with at least 90% sequence identity to SEQ ID NO: 43.
- the first and the second linkers can comprise SEQ ID NO: 44.
- the first and the second linkers can comprise a sequence with at least 90% sequence identity to SEQ ID NO: 44.
- the antibody comprises a CH3 domain comprising the amino acid sequence of SEQ ID NO: 106.
- the antibody can comprise a CH3 domain having an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 106.
- the antibody can comprise a CH3 domain having an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 106.
- the antibody comprises a heavy chain variable region having the polypeptide sequence of SEQ ID NO: 110 and a light chain variable region having the polypeptide sequence of SEQ ID NO: 115.
- the antibody can comprise a heavy chain variable region having an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 110 and a light chain variable region having an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 115.
- the antibody can comprise a heavy chain variable region having an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 110 and a light chain variable region having an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 115.
- the antibody comprises a heavy chain having a polypeptide sequence of SEQ ID NO: 119 and a light chain having the polypeptide sequence of SEQ ID NO: 121.
- the antibody can comprise a heavy chain having an amino acid Attorney Docket No.
- the antibody can comprise a heavy chain having an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 119 and a light chain having an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 121.
- the antibody comprises a heavy chain that is encoded by a polynucleotide sequence of SEQ ID NO: 118 and a light chain that is encoded by a polynucleotide sequence of SEQ ID NO: 120.
- antibodies that immunospecifically bind to TIGIT wherein the antibodies comprise, consist essentially of, or consist of a heavy chain (HC) and a light chain (LC) that pair to form a binding domain comprising a heavy chain complementarity determining region 1 (HCDR1) comprising the amino acid sequence of SEQ ID NO: 146, a HCDR2 comprising the amino acid sequence of SEQ ID NO: 147, a HCDR3 comprising the amino acid sequence of SEQ ID NO: 148, a light chain complementarity determining region 1 (LCDR1) comprising the amino acid sequence of SEQ ID NO: 151, a LCDR2 comprising the amino acid sequence of SAS, and a LCDR3 comprising the amino acid sequence of SEQ ID NO: 152, and wherein the heavy chain further comprises a first CH2 domain, a second CH2 domain, and a third CH2 domain, wherein the first CH2 domain and the second CH2 domain are connected by a first linker and an optional first hinge
- the antibodies that immunospecifically bind to TIGIT further comprise a CH3 domain linked to the C-terminus of the third CH2 domain.
- the first CH2 domain, the second CH2 domain, and the third CH2 domain can each comprise the amino acid sequence of SEQ ID NO: 19.
- the first CH2 domain, the second CH2 domain, and the third CH2 domain each comprise the amino acid sequence of SEQ ID NO: 19.
- the first CH2 domain, the second CH2 domain, and the third CH2 domain can each comprise an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 19.
- the first CH2 domain, the second CH2 domain, and the third CH2 domain can each comprise an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 19.
- the first hinge and the second hinge can each comprise the amino acid sequence of SEQ ID NO: 18.
- the first hinge and the second hinge can each comprise the amino acid sequence of SEQ ID NO: 18.
- the first hinge and the second hinge can each comprise an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 18.
- the first hinge and the second hinge can each comprise an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 18.
- the first linker and the second linker can each comprise the amino acid sequence of GS, GGS, SEQ ID NO: 14, SEQ ID NO: 38, SEQ ID NO: 43, or SEQ ID NO: 44.
- the first and the second linkers can comprise GS.
- the first and the second linkers can comprise GGS.
- the first and the second linkers can comprise SEQ ID NO: 14.
- the first and the second linkers can comprise SEQ ID NO: 38.
- the first and the second linkers can comprise SEQ ID NO: 43.
- the first and the second linkers can comprise a sequence with at least 90% sequence identity to SEQ ID NO: 43.
- the first and the second linkers can comprise SEQ ID NO: 44.
- the first and the second linkers can comprise a sequence with at least 90% sequence identity to SEQ ID NO: 44.
- the antibody comprises a CH3 domain comprising the amino acid sequence of SEQ ID NO: 20.
- the antibody can comprise a CH3 domain having an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 20.
- the antibody can comprise a CH3 domain having an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 20.
- the antibody comprises a heavy chain variable region having the polypeptide sequence of SEQ ID NO: 145 and a light chain variable region having the polypeptide sequence of SEQ ID NO: 150.
- the antibody can comprise a heavy chain variable region having an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 145 and a light chain variable region having an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 150.
- the antibody can comprise a heavy chain variable region having an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 145 and a light chain variable region having an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 150.
- the antibody comprises a heavy chain having a polypeptide sequence of SEQ ID NO: 154 and a light chain having the polypeptide sequence of SEQ ID NO: 156.
- the antibody can comprise a heavy chain having an amino acid Attorney Docket No. TP385350WO1 sequence with at least 90% sequence identity to SEQ ID NO: 154 and a light chain having an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 156.
- the antibody can comprise a heavy chain having an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 154 and a light chain having an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 156.
- the antibody comprises a heavy chain that is encoded by a polynucleotide sequence of SEQ ID NO: 153 and a light chain that is encoded by a polynucleotide sequence of SEQ ID NO: 155.
- the antibody is labeled.
- the label can be selected from a fluorophore, a fluorescent protein, a phosphorescent dye, a tandem dye, a polymer dye, a particle, an electron transfer agent, a hapten, an enzyme, a radioisotope, a chromophore, and an oligonucleotide-based fluorescent dye.
- the label can be a fluorophore.
- the label can be a fluorescent protein.
- the label can be a phosphorescent dye.
- the label can be a tandem dye.
- the label can be a polymer dye.
- the label can be a particle.
- the label can be an electron transfer agent.
- the label can be a hapten.
- the label can be an enzyme.
- the label can be a radioisotope.
- the label can be a chromophore.
- the label can be an oligonucleotide-based fluorescent dye.
- the label is a fluorophore.
- the fluorophore can be a pyrene, an anthracene, a naphthalene, an acridine, a stilbene, an indole or benzindole, an oxazole or benzoxazole, a thiazole or benzothiazole, an indacene, a 4-amino-7-nitrobenz-2- oxa-1,3-diazole (NBD), a cyanine, a carbocyanine, a benzocyanine, a carbostyryl, a porphyrin, a salicylate, an anthranilate, an azulene, a perylene, a pyridine, a quinoline, a borapolyazaindacene, a
- the fluorophore can be a pyrene.
- the fluorophore can be an anthracene.
- the fluorophore can be a naphthalene.
- the fluorophore can be an acridine.
- the fluorophore can be a stilbene.
- the fluorophore can be an indole.
- the fluorophore can be a benzindole.
- the fluorophore can be an oxazole.
- the fluorophore can be a benzoxazole.
- the fluorophore can be a thiazole.
- the fluorophore can be a benzothiazole.
- the fluorophore can be an indacene.
- the fluorophore can be a 4-amino-7-nitrobenz-2-oxa-1, Attorney Docket No. TP385350WO1 3-diazole (NBD).
- the fluorophore can be a cyanine.
- the fluorophore can be a carbocyanine.
- the fluorophore can be a benzocyanine.
- the fluorophore can be a carbostyryl.
- the fluorophore can be a porphyrin.
- the fluorophore can be a salicylate.
- the fluorophore can be an anthranilate.
- the fluorophore can be an azulene.
- the fluorophore can be a perylene.
- the fluorophore can be a pyridine.
- the fluorophore can be a quinoline.
- the fluorophore can be a borapolyazaindacene.
- the fluorophore can be a xanthene.
- the fluorophore can be a rhodamine.
- the fluorophore can be a silicon rhodamine.
- the fluorophore can be a fluorescein.
- the fluorophore can be a rhodol.
- the fluorophore can be a rosamine.
- the fluorophore can be an oxazine.
- the fluorophore can be a benzoxazine.
- the fluorophore can be a benzophenoxazine.
- the fluorophore can be a carbazine.
- the fluorophore can be a phenalenone.
- the fluorophore can be a coumarin.
- the fluorophore can be a furan.
- the fluorophore can be a benzofuran.
- the fluorophore can be a benzophenalenone.
- the fluorophore can be a benzopyrilium.
- the fluorophore can be a styryl.
- the fluorophore can be a squarine.
- the fluorophore can be a resorufin.
- the fluorophore can be an anthrquinone.
- the fluorophore can be a quinazolinone.
- the fluorophore can be an oligonucleotide-based fluorescent dye.
- the fluorophore can be a conjugated polymer dye.
- the fluorophore can be a tandem dye.
- the label is a particle.
- the particle can be a semiconductor nanocrystal.
- the label is a hapten.
- the hapten can be a biotin or a biotin derivative.
- the hapten can be biotin.
- the hapten can be a biotin derivative.
- the label is an enzyme.
- the enzyme can be a peroxidase, a phosphatase, a glycosidase, and a luciferase.
- the enzyme can be a peroxidase.
- the enzyme can be a phosphatase.
- the enzyme can be a glycosidase.
- the enzyme can be a luciferase.
- nucleic acid molecules comprising, consisting essentially of, or consisting of polynucleotides encoding antibodies that immunospecifically binds to Parkin, wherein the antibodies comprise a heavy chain (HC) and a light chain (LC) that pair to form a binding domain comprising a heavy chain complementarity determining region 1 (HCDR1) comprising the amino acid sequence of SEQ ID NO: 4, a HCDR2 comprising the amino acid sequence of SEQ ID NO: 5, a HCDR3 comprising the amino acid sequence of SEQ ID NO: 6, a light chain complementarity determining region 1 (LCDR1) Attorney Docket No.
- TP385350WO1 comprising the amino acid sequence of SEQ ID NO: 13, a LCDR2 comprising the amino acid sequence RAS, and a LCDR3 comprising the amino acid sequence of SEQ ID NO: 15, and wherein the heavy chain further comprises a first CH2 domain, a second CH2 domain, and a third CH2 domain, wherein the first CH2 domain and the second CH2 domain are connected by a first linker and an optional first hinge, and wherein the second CH2 domain and the third CH2 domain are connected by a second linker and an optional second hinge.
- polynucleotides further encode a CH3 domain linked to the C-terminus of the third CH2 domain.
- the polynucleotide can encode a first CH2 domain, a second CH2 domain, and a third CH2 domain each comprising the amino acid sequence of SEQ ID NO: 19 or SEQ ID NO: 49.
- the polynucleotide encodes a first CH2 domain, a second CH2 domain, and a third CH2 domain each comprising the amino acid sequence of SEQ ID NO: 19.
- the polynucleotide can encode a first CH2 domain, a second CH2 domain, and a third CH2 domain each comprising an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 19.
- the polynucleotide can encode a first CH2 domain, a second CH2 domain, and a third CH2 domain each comprising an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 19.
- the polynucleotide in the polynucleotide encoding the first CH2 domain, the second CH2 domain, and the third CH2 domain, the polynucleotide comprises SEQ ID NO: 23. [00371]
- the polynucleotide encodes a first CH2 domain, a second CH2 domain, and a third CH2 domain each comprising the amino acid sequence of SEQ ID NO: 49.
- the polynucleotide can encode a first CH2 domain, a second CH2 domain, and a third CH2 domain each comprising an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 49.
- the polynucleotide can encode a first CH2 domain, a second CH2 domain, and a third CH2 domain each comprising an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 49.
- the polynucleotide encoding each CH2 domain comprises SEQ ID NO: 62.
- the polynucleotide can encode a first hinge and a second hinge each comprising the amino acid sequence of SEQ ID NO: 18 or SEQ ID NO: 48. In some embodiments, the polynucleotide encodes a first hinge and a second hinge each comprising the amino acid sequence of SEQ ID NO: 18. The polynucleotide can encode a first hinge and Attorney Docket No. TP385350WO1 a second hinge each comprising an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 18. The polynucleotide can encode a first hinge and a second hinge each comprising an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 18.
- the polynucleotide encoding each hinge comprises SEQ ID NO: 22.
- the polynucleotide encodes a first hinge and a second hinge each comprising the amino acid sequence of SEQ ID NO: 48.
- the polynucleotide can encode a first hinge and a second hinge each comprising an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 48.
- the polynucleotide can encode a first hinge and a second hinge each comprising an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 48.
- the polynucleotide encoding each hinge comprises SEQ ID NO: 51.
- the polynucleotide can encode a first linker and a second linker comprising the amino acid sequence of GS, GGS, SEQ ID NO: 14, SEQ ID NO: 38, SEQ ID NO: 43, or SEQ ID NO: 44.
- the polynucleotide can encode the first and the second linkers comprising GS.
- the first and the second linkers can comprise GGS.
- the polynucleotide can encode the first and the second linkers comprising SEQ ID NO: 14.
- the polynucleotide can encode the first and the second linkers comprising SEQ ID NO: 38.
- the polynucleotide can encode the first and the second linkers comprising SEQ ID NO: 43.
- the polynucleotide can encode a first and a second linker comprising a sequence with at least 90% sequence identity to SEQ ID NO: 43.
- the polynucleotide can encode the first and the second linkers comprising SEQ ID NO: 44.
- the polynucleotide can encode a first and a second linker comprising a sequence with at least 90% sequence identity to SEQ ID NO: 44.
- the polynucleotide encodes an antibody that comprises a CH3 domain comprising the amino acid sequence of SEQ ID NO: 20. In some embodiments, the polynucleotide encodes an antibody that comprises a CH3 domain having an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 20. In some embodiments, the polynucleotide encodes an antibody that comprises a CH3 domain having an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 20. [00376] In some embodiments, the polynucleotide encodes an antibody comprising a heavy chain variable region having the polypeptide sequence of SEQ ID NO: 7 and a light Attorney Docket No.
- the polynucleotide can encode an antibody comprising a heavy chain variable region having an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 7 and a light chain variable region having an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 16.
- the polynucleotide can encode an antibody comprising a heavy chain variable region having an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 7 and a light chain variable region having an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 16.
- the polynucleotide encodes an antibody comprising a heavy chain having a polypeptide sequence of SEQ ID NO: 3 and a light chain having the polypeptide sequence of SEQ ID NO: 12.
- the polynucleotide can encode an antibody comprising a heavy chain having an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 3 and a light chain having an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 12.
- the polynucleotide can encode an antibody comprising a heavy chain having an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 3 and a light chain having an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 12.
- the polynucleotide in the polynucleotide encoding the heavy chain and the light chain, the polynucleotide comprises SEQ ID NO: 2 and SEQ ID NO: 11.
- nucleic acid molecules comprising, consisting essentially of, or consisting of polynucleotides encoding antibodies that immunospecifically binds to OCT4, wherein the antibody comprises a heavy chain (HC) and a light chain (LC) that pair to form a binding domain comprising a heavy chain complementarity determining region 1 (HCDR1) comprising the amino acid sequence of SEQ ID NO: 29, a HCDR2 comprising the amino acid sequence of SEQ ID NO: 30, and a HCDR3 comprising the amino acid sequence of SEQ ID NO: 31, a light chain complementarity determining region 1 (LCDR1) comprising the amino acid sequence of SEQ ID NO: 37, a LCDR2 comprising the amino acid sequence GAS, and a LCDR3 comprising the amino acid sequence of SEQ ID NO
- polynucleotides further encode a CH3 domain linked to the C- terminus of the third CH2 domain.
- the polynucleotide can encode a first CH2 domain, a second CH2 domain, and a third CH2 domain each comprising the amino acid sequence of SEQ ID NO: 19 or SEQ ID NO: 49.
- the polynucleotide encodes a first CH2 domain, a second CH2 domain, and a third CH2 domain each comprising the amino acid sequence of SEQ ID NO: 19.
- the polynucleotide can encode a first CH2 domain, a second CH2 domain, and a third CH2 domain each comprising an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 19.
- the polynucleotide can encode a first CH2 domain, a second CH2 domain, and a third CH2 domain each comprising an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 19.
- the polynucleotide comprises SEQ ID NO: 23.
- the polynucleotide encodes a first CH2 domain, a second CH2 domain, and a third CH2 domain each comprising the amino acid sequence of SEQ ID NO: 49.
- the polynucleotide can encode a first CH2 domain, a second CH2 domain, and a third CH2 domain each comprising an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 49.
- the polynucleotide can encode a first CH2 domain, a second CH2 domain, and a third CH2 domain each comprising an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 49.
- the polynucleotide encoding each CH2 domain comprises SEQ ID NO: 62.
- the polynucleotide can encode a first hinge and a second hinge each comprising the amino acid sequence of SEQ ID NO: 18 or SEQ ID NO: 48.
- the polynucleotide encodes a first hinge and a second hinge each comprising the amino acid sequence of SEQ ID NO: 18.
- the polynucleotide can encode a first hinge and a second hinge each comprising an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 18.
- the polynucleotide can encode a first hinge and a second hinge each comprising an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 18.
- the polynucleotide encoding each hinge comprises SEQ ID NO: 22.
- the polynucleotide encodes a first hinge and a second hinge each comprising the amino acid sequence of SEQ ID NO: 48.
- the polynucleotide can encode a first hinge and a second hinge each comprising an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 48.
- the polynucleotide can encode a first hinge and a second hinge each comprising an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 48.
- the polynucleotide encoding each hinge comprises SEQ ID NO: 51.
- the polynucleotide can encode a first linker and a second linker comprising the amino acid sequence of GS, GGS, SEQ ID NO: 14, SEQ ID NO: 38, SEQ ID NO: 43, or SEQ ID NO: 44.
- the polynucleotide can encode the first and the second linkers comprising GS.
- the first and the second linkers can comprise GGS.
- the polynucleotide can encode the first and the second linkers comprising SEQ ID NO: 14.
- the polynucleotide can encode the first and the second linkers comprising SEQ ID NO: 38.
- the polynucleotide can encode the first and the second linkers comprising SEQ ID NO: 43.
- the polynucleotide can encode a first and a second linker comprising a sequence with at least 90% sequence identity to SEQ ID NO: 43.
- the polynucleotide can encode the first and the second linkers comprising SEQ ID NO: 44.
- the polynucleotide can encode a first and a second linker comprising a sequence with at least 90% sequence identity to SEQ ID NO: 44.
- the polynucleotide encodes an antibody comprising a heavy chain variable region having the polypeptide sequence of SEQ ID NO: 32 and a light chain variable region having the polypeptide sequence of SEQ ID NO: 40.
- the polynucleotide can encode an antibody comprising a heavy chain variable region having an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 32 and a light chain variable region having an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 40.
- the polynucleotide can encode an antibody comprising a heavy chain variable region having an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 32 and a light chain variable region having an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 40.
- the polynucleotide encodes an antibody that comprises a CH3 domain comprising the amino acid sequence of SEQ ID NO: 20.
- the polynucleotide encodes an antibody that comprises a CH3 domain having Attorney Docket No. TP385350WO1 an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 20.
- the polynucleotide encodes an antibody that comprises a CH3 domain having an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 20. [00386] In some embodiments, the polynucleotide encodes an antibody comprising a heavy chain having a polypeptide sequence of SEQ ID NO: 28 and a light chain having the polypeptide sequence of SEQ ID NO: 36. The polynucleotide can encode an antibody comprising a heavy chain having an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 28 and a light chain having an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 36.
- the polynucleotide can encode an antibody comprising a heavy chain having an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 28 and a light chain having an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 36.
- the polynucleotide in the polynucleotide encoding the heavy chain and the light chain, the polynucleotide comprises SEQ ID NO: 27 and SEQ ID NO: 35.
- nucleic acid molecules comprising, consisting essentially of, or consisting of polynucleotides encoding antibodies that immunospecifically binds to IDO1, wherein the antibodies comprise a heavy chain (HC) and a light chain (LC) that pair to form a binding domain comprising a heavy chain complementarity determining region 1 (HCDR1) comprising the amino acid sequence of SEQ ID NO: 66, a HCDR2 comprising the amino acid sequence of SEQ ID NO: 67, a HCDR3 comprising the amino acid sequence of SEQ ID NO: 68, a light chain complementarity determining region 1 (LCDR1) comprising the amino acid sequence of SEQ ID NO: 72, a LCDR2 comprising the amino acid sequence of YAS, and a LCDR3 comprising the amino acid sequence of SEQ ID NO: 73, and wherein the heavy chain further comprises a first CH2 domain, a second CH2 domain, and a third CH2 domain, wherein the first CH2
- polynucleotides further encode a CH3 domain linked to the C- terminus of the third CH2 domain.
- the polynucleotide can encode a first CH2 domain, a second CH2 domain, and a third CH2 domain each comprising the amino acid sequence of SEQ ID NO: 19 or SEQ ID NO: 49.
- the polynucleotide encodes a first CH2 domain, a second CH2 domain, and a third CH2 domain each comprising the amino acid sequence of SEQ ID Attorney Docket No. TP385350WO1 NO: 19.
- the polynucleotide can encode a first CH2 domain, a second CH2 domain, and a third CH2 domain each comprising an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 19.
- the polynucleotide can encode a first CH2 domain, a second CH2 domain, and a third CH2 domain each comprising an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 19.
- the polynucleotide comprises SEQ ID NO: 178.
- the polynucleotide encodes a first CH2 domain, a second CH2 domain, and a third CH2 domain each comprising the amino acid sequence of SEQ ID NO: 49.
- the polynucleotide can encode a first CH2 domain, a second CH2 domain, and a third CH2 domain each comprising an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 49.
- the polynucleotide can encode a first CH2 domain, a second CH2 domain, and a third CH2 domain each comprising an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 49.
- the polynucleotide encoding each CH2 domain comprises SEQ ID NO: 62.
- the polynucleotide can encode a first hinge and a second hinge each comprising the amino acid sequence of SEQ ID NO: 18 or SEQ ID NO: 48.
- the polynucleotide encodes a first hinge and a second hinge each comprising the amino acid sequence of SEQ ID NO: 18.
- the polynucleotide can encode a first hinge and a second hinge each comprising an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 18.
- the polynucleotide can encode a first hinge and a second hinge each comprising an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 18.
- the polynucleotide encoding each hinge comprises SEQ ID NO: 22.
- the polynucleotide encodes a first hinge and a second hinge each comprising the amino acid sequence of SEQ ID NO: 48.
- the polynucleotide can encode a first hinge and a second hinge each comprising an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 48.
- the polynucleotide can encode a first hinge and a second hinge each comprising an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 48.
- the polynucleotide encoding each hinge comprises SEQ ID NO: 51.
- the polynucleotide can encode a first linker and a second linker comprising the amino acid sequence of GS, GGS, SEQ ID NO: 14, SEQ ID NO: 38, SEQ ID NO: 43, or SEQ ID NO: 44.
- the polynucleotide can encode the first and the second linkers comprising GS.
- the first and the second linkers can comprise GGS.
- the polynucleotide can encode the first and the second linkers comprising SEQ ID NO: 14.
- the polynucleotide can encode the first and the second linkers comprising SEQ ID NO: 38.
- the polynucleotide can encode the first and the second linkers comprising SEQ ID NO: 43.
- the polynucleotide can encode a first and a second linker comprising a sequence with at least 90% sequence identity to SEQ ID NO: 43.
- the polynucleotide can encode the first and the second linkers comprising SEQ ID NO: 44.
- the polynucleotide can encode a first and a second linker comprising a sequence with at least 90% sequence identity to SEQ ID NO: 44.
- the polynucleotide encodes an antibody that comprises a CH3 domain comprising the amino acid sequence of SEQ ID NO: 20. In some embodiments, the polynucleotide encodes an antibody that comprises a CH3 domain having an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 20. In some embodiments, the polynucleotide encodes an antibody that comprises a CH3 domain having an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 20.
- the polynucleotide encodes an antibody comprising a heavy chain variable region having the polypeptide sequence of SEQ ID NO: 65 and a light chain variable region having the polypeptide sequence of SEQ ID NO: 71.
- the polynucleotide can encode an antibody comprising a heavy chain variable region having an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 65 and a light chain variable region having an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 71.
- the polynucleotide can encode an antibody comprising a heavy chain variable region having an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 65 and a light chain variable region having an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 71. [00395] In some embodiments, the polynucleotide encodes an antibody comprising a heavy chain having a polypeptide sequence of SEQ ID NO: 75 and a light chain having the polypeptide sequence of SEQ ID NO: 77. The polynucleotide can encode an antibody Attorney Docket No.
- TP385350WO1 comprising a heavy chain having an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 75 and a light chain having an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 77.
- the polynucleotide can encode an antibody comprising a heavy chain having an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 75 and a light chain having an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 77.
- the polynucleotide comprises SEQ ID NO: 75 and SEQ ID NO: 77.
- nucleic acid molecules comprising, consisting essentially of, or consisting of polynucleotides encoding antibodies that immunospecifically binds to FLAG-tag, wherein the antibodies comprise a heavy chain (HC) and a light chain (LC) that pair to form a binding domain comprising a heavy chain complementarity determining region 1 (HCDR1) comprising the amino acid sequence of SEQ ID NO: 163, a HCDR2 comprising the amino acid sequence of SEQ ID NO: 164, a HCDR3 comprising the amino acid sequence of SEQ ID NO: 165, a light chain complementarity determining region 1 (LCDR1) comprising the amino acid sequence of SEQ ID NO: 168, a LCDR2 comprising the amino acid sequence of YAS, and a LCDR3 comprising the amino acid sequence of SEQ ID NO: 169, and wherein the heavy chain further comprises a first CH2 domain, a second CH2 domain, and a third CH2 domain, wherein the first
- polynucleotides further encode a CH3 domain linked to the C-terminus of the third CH2 domain.
- the polynucleotide can encode a first CH2 domain, a second CH2 domain, and a third CH2 domain each comprising the amino acid sequence of SEQ ID NO: 19 or SEQ ID NO: 49.
- the polynucleotide encodes a first CH2 domain, a second CH2 domain, and a third CH2 domain each comprising the amino acid sequence of SEQ ID NO: 19.
- the polynucleotide can encode a first CH2 domain, a second CH2 domain, and a third CH2 domain each comprising an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 19.
- the polynucleotide can encode a first CH2 domain, a second CH2 domain, and a third CH2 domain each comprising an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 19.
- the polynucleotide in the polynucleotide Attorney Docket No. TP385350WO1 encoding the first CH2 domain, the second CH2 domain, and the third CH2 domain, the polynucleotide comprises SEQ ID NO: 23. [00398]
- the polynucleotide encodes a first CH2 domain, a second CH2 domain, and a third CH2 domain each comprising the amino acid sequence of SEQ ID NO: 49.
- the polynucleotide can encode a first CH2 domain, a second CH2 domain, and a third CH2 domain each comprising an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 49.
- the polynucleotide can encode a first CH2 domain, a second CH2 domain, and a third CH2 domain each comprising an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 49.
- the polynucleotide encoding each CH2 domain comprises SEQ ID NO: 62.
- the polynucleotide can encode a first hinge and a second hinge each comprising the amino acid sequence of SEQ ID NO: 18 or SEQ ID NO: 48. In some embodiments, the polynucleotide encodes a first hinge and a second hinge each comprising the amino acid sequence of SEQ ID NO: 18. The polynucleotide can encode a first hinge and a second hinge each comprising an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 18. The polynucleotide can encode a first hinge and a second hinge each comprising an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 18.
- the polynucleotide encoding each hinge comprises SEQ ID NO: 22.
- the polynucleotide encodes a first hinge and a second hinge each comprising the amino acid sequence of SEQ ID NO: 48.
- the polynucleotide can encode a first hinge and a second hinge each comprising an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 48.
- the polynucleotide can encode a first hinge and a second hinge each comprising an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 48.
- the polynucleotide encoding each hinge comprises SEQ ID NO: 51.
- the polynucleotide can encode a first linker and a second linker comprising the amino acid sequence of GS, GGS, SEQ ID NO: 14, SEQ ID NO: 38, SEQ ID NO: 43, or SEQ ID NO: 44.
- the polynucleotide can encode the first and the second linkers comprising GS.
- the first and the second linkers can comprise GGS.
- the polynucleotide can encode the Attorney Docket No. TP385350WO1 first and the second linkers comprising SEQ ID NO: 14.
- the polynucleotide can encode the first and the second linkers comprising SEQ ID NO: 38.
- the polynucleotide can encode the first and the second linkers comprising SEQ ID NO: 43.
- the polynucleotide can encode a first and a second linker comprising a sequence with at least 90% sequence identity to SEQ ID NO: 43.
- the polynucleotide can encode the first and the second linkers comprising SEQ ID NO: 44.
- the polynucleotide can encode a first and a second linker comprising a sequence with at least 90% sequence identity to SEQ ID NO: 44.
- the polynucleotide encodes an antibody that comprises a CH3 domain comprising the amino acid sequence of SEQ ID NO: 20. In some embodiments, the polynucleotide encodes an antibody that comprises a CH3 domain having an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 20. In some embodiments, the polynucleotide encodes an antibody that comprises a CH3 domain having an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 20.
- the polynucleotide encodes an antibody comprising a heavy chain variable region having the polypeptide sequence of SEQ ID NO: 162 and a light chain variable region having the polypeptide sequence of SEQ ID NO: 167.
- the polynucleotide can encode an antibody comprising a heavy chain variable region having an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 162 and a light chain variable region having an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 167.
- the polynucleotide can encode an antibody comprising a heavy chain variable region having an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 162 and a light chain variable region having an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 167.
- the polynucleotide encodes an antibody comprising a heavy chain having a polypeptide sequence of SEQ ID NO: 171 and a light chain having the polypeptide sequence of SEQ ID NO: 173.
- the polynucleotide can encode an antibody comprising a heavy chain having an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 171 and a light chain having an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 173.
- the polynucleotide can encode an antibody comprising a heavy chain having an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 171 and a light chain having an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 173.
- the polynucleotide in the polynucleotide encoding Attorney Docket No. TP385350WO1 the heavy chain and the light chain, the polynucleotide comprises SEQ ID NO: 170 and SEQ ID NO: 172.
- nucleic acid molecules comprising, consisting essentially of, or consisting of polynucleotides encoding rabbit anti-mouse IgG secondary antibodies (RAM), wherein the antibodies comprise a heavy chain (HC) and a light chain (LC) that pair to form a binding domain comprising a heavy chain complementarity determining region 1 (HCDR1) comprising the amino acid sequence of SEQ ID NO: 127, a HCDR2 comprising the amino acid sequence of SEQ ID NO: 128, a HCDR3 comprising the amino acid sequence of SEQ ID NO: 129, a light chain complementarity determining region 1 (LCDR1) comprising the amino acid sequence of SEQ ID NO: 132, a LCDR2 comprising the amino acid sequence of GAS, and a LCDR3 comprising the amino acid sequence of SEQ ID NO: 133, and wherein the heavy chain further comprises a first CH2 domain, a second CH2 domain, and a third CH2 domain, wherein the first CH
- polynucleotides further encode a CH3 domain linked to the C-terminus of the third CH2 domain.
- the polynucleotide can encode a first CH2 domain, a second CH2 domain, and a third CH2 domain each comprising the amino acid sequence of SEQ ID NO: 19 or SEQ ID NO: 49.
- the polynucleotide encodes a first CH2 domain, a second CH2 domain, and a third CH2 domain each comprising the amino acid sequence of SEQ ID NO: 19.
- the polynucleotide can encode a first CH2 domain, a second CH2 domain, and a third CH2 domain each comprising an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 19.
- the polynucleotide can encode a first CH2 domain, a second CH2 domain, and a third CH2 domain each comprising an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 19.
- the polynucleotide in the polynucleotide encoding the first CH2 domain, the second CH2 domain, and the third CH2 domain, the polynucleotide comprises SEQ ID NO: 23.
- the polynucleotide encodes a first CH2 domain, a second CH2 domain, and a third CH2 domain each comprising the amino acid sequence of SEQ ID NO: 49.
- the polynucleotide can encode a first CH2 domain, a second CH2 domain, and a third CH2 domain each comprising an amino acid sequence with at least 90% sequence Attorney Docket No. TP385350WO1 identity to SEQ ID NO: 49
- the polynucleotide can encode a first CH2 domain, a second CH2 domain, and a third CH2 domain each comprising an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 49.
- the polynucleotide encoding each CH2 domain comprises SEQ ID NO: 62.
- the polynucleotide can encode a first hinge and a second hinge each comprising the amino acid sequence of SEQ ID NO: 18 or SEQ ID NO: 48. In some embodiments, the polynucleotide encodes a first hinge and a second hinge each comprising the amino acid sequence of SEQ ID NO: 18. The polynucleotide can encode a first hinge and a second hinge each comprising an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 18. The polynucleotide can encode a first hinge and a second hinge each comprising an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 18.
- the polynucleotide encoding each hinge comprises SEQ ID NO: 22.
- the polynucleotide encodes a first hinge and a second hinge each comprising the amino acid sequence of SEQ ID NO: 48.
- the polynucleotide can encode a first hinge and a second hinge each comprising an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 48.
- the polynucleotide can encode a first hinge and a second hinge each comprising an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 48.
- the polynucleotide encoding each hinge comprises SEQ ID NO: 51.
- the polynucleotide can encode a first linker and a second linker comprising the amino acid sequence of GS, GGS, SEQ ID NO: 14, SEQ ID NO: 38, SEQ ID NO: 43, or SEQ ID NO: 44.
- the polynucleotide can encode the first and the second linkers comprising GS.
- the first and the second linkers can comprise GGS.
- the polynucleotide can encode the first and the second linkers comprising SEQ ID NO: 14.
- the polynucleotide can encode the first and the second linkers comprising SEQ ID NO: 38.
- the polynucleotide can encode the first and the second linkers comprising SEQ ID NO: 43.
- the polynucleotide can encode a first and a second linker comprising a sequence with at least 90% sequence identity to SEQ ID NO: 43.
- the polynucleotide can encode the first and the second linkers comprising SEQ Attorney Docket No. TP385350WO1 ID NO: 44.
- the polynucleotide can encode a first and a second linker comprising a sequence with at least 90% sequence identity to SEQ ID NO: 44.
- the polynucleotide encodes an antibody that comprises a CH3 domain comprising the amino acid sequence of SEQ ID NO: 20. In some embodiments, the polynucleotide encodes an antibody that comprises a CH3 domain having an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 20. In some embodiments, the polynucleotide encodes an antibody that comprises a CH3 domain having an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 20.
- the polynucleotide encodes an antibody comprising a heavy chain variable region having the polypeptide sequence of SEQ ID NO: 126 and a light chain variable region having the polypeptide sequence of SEQ ID NO: 131.
- the polynucleotide can encode an antibody comprising a heavy chain variable region having an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 126 and a light chain variable region having an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 131.
- the polynucleotide can encode an antibody comprising a heavy chain variable region having an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 126 and a light chain variable region having an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 131. [00413] In some embodiments, the polynucleotide encodes an antibody comprising a heavy chain having a polypeptide sequence of SEQ ID NO: 135 and a light chain having the polypeptide sequence of SEQ ID NO: 137.
- the polynucleotide can encode an antibody comprising a heavy chain having an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 135 and a light chain having an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 137.
- the polynucleotide can encode an antibody comprising a heavy chain having an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 135 and a light chain having an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 137.
- the polynucleotide comprises SEQ ID NO: 134 and SEQ ID NO: 136.
- nucleic acid molecules comprising, consisting essentially of, or consisting of polynucleotides encoding antibodies that immunospecifically binds to pERK1/2, wherein the antibodies comprise a heavy chain (HC) and a light chain Attorney Docket No.
- HC heavy chain
- a light chain Attorney Docket No.
- TP385350WO1 that pair to form a binding domain comprising a heavy chain complementarity determining region 1 (HCDR1) comprising the amino acid sequence of SEQ ID NO: 85, a HCDR2 comprising the amino acid sequence of SEQ ID NO: 86, a HCDR3 comprising the amino acid sequence of SEQ ID NO: 87, a light chain complementarity determining region 1 (LCDR1) comprising the amino acid sequence of SEQ ID NO: 91, a LCDR2 comprising the amino acid sequence of KVS, and a LCDR3 comprising the amino acid sequence of SEQ ID NO: 92, and wherein the heavy chain further comprises a first CH2 domain, a second CH2 domain, and a third CH2 domain, wherein the first CH2 domain and the second CH2 domain are connected by a first linker and an optional first hinge, and wherein the second CH2 domain and the third CH2 domain are connected by a second linker and an optional second hinge.
- HCDR1 heavy chain complementarity determining region 1
- polynucleotides further encode a CH3 domain linked to the C- terminus of the third CH2 domain.
- the polynucleotide can encode a first CH2 domain, a second CH2 domain, and a third CH2 domain each comprising the amino acid sequence of SEQ ID NO: 104.
- the polynucleotide encodes a first CH2 domain, a second CH2 domain, and a third CH2 domain each comprising the amino acid sequence of SEQ ID NO: 104.
- the polynucleotide can encode a first CH2 domain, a second CH2 domain, and a third CH2 domain each comprising an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 104.
- the polynucleotide can encode a first CH2 domain, a second CH2 domain, and a third CH2 domain each comprising an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 104.
- the polynucleotide in the polynucleotide encoding the first CH2 domain, the second CH2 domain, and the third CH2 domain, the polynucleotide comprises SEQ ID NO: 103.
- the polynucleotide can encode a first hinge and a second hinge each comprising the amino acid sequence of SEQ ID NO: 102.
- the polynucleotide encodes a first hinge and a second hinge each comprising the amino acid sequence of SEQ ID NO: 102.
- the polynucleotide can encode a first hinge and a second hinge each comprising an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 102.
- the polynucleotide can encode a first hinge and a second hinge each comprising an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 102.
- the polynucleotide encoding each hinge comprises SEQ ID NO: 101. Attorney Docket No.
- the polynucleotide can encode a first linker and a second linker comprising the amino acid sequence of GS, GGS, SEQ ID NO: 14, SEQ ID NO: 38, SEQ ID NO: 43, or SEQ ID NO: 44.
- the polynucleotide can encode the first and the second linkers comprising GS.
- the first and the second linkers can comprise GGS.
- the polynucleotide can encode the first and the second linkers comprising SEQ ID NO: 14.
- the polynucleotide can encode the first and the second linkers comprising SEQ ID NO: 38.
- the polynucleotide can encode the first and the second linkers comprising SEQ ID NO: 43.
- the polynucleotide can encode a first and a second linker comprising a sequence with at least 90% sequence identity to SEQ ID NO: 43.
- the polynucleotide can encode the first and the second linkers comprising SEQ ID NO: 44.
- the polynucleotide can encode a first and a second linker comprising a sequence with at least 90% sequence identity to SEQ ID NO: 44.
- the polynucleotide encodes an antibody that comprises a CH3 domain comprising the amino acid sequence of SEQ ID NO: 106.
- the polynucleotide encodes an antibody that comprises a CH3 domain having an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 106.
- the polynucleotide encodes an antibody that comprises a CH3 domain having an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 106. [00419] In some embodiments, the polynucleotide encodes an antibody comprising a heavy chain variable region having the polypeptide sequence of SEQ ID NO: 84 and a light chain variable region having the polypeptide sequence of SEQ ID NO: 90. The polynucleotide can encode an antibody comprising a heavy chain variable region having an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 84 and a light chain variable region having an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 90.
- the polynucleotide can encode an antibody comprising a heavy chain variable region having an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 84 and a light chain variable region having an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 90.
- the polynucleotide encodes an antibody comprising a heavy chain having a polypeptide sequence of SEQ ID NO: 94 and a light chain having the polypeptide sequence of SEQ ID NO: 96.
- the polynucleotide can encode an antibody comprising a heavy chain having an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 94 and a light chain having an amino acid sequence with at least 90% Attorney Docket No.
- the polynucleotide can encode an antibody comprising a heavy chain having an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 94 and a light chain having an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 96.
- the polynucleotide in the polynucleotide encoding the heavy chain and the light chain, the polynucleotide comprises SEQ ID NO: 93 and SEQ ID NO: 95.
- nucleic acid molecules comprising, consisting essentially of, or consisting of polynucleotides encoding antibodies that immunospecifically binds to PSD-95, wherein the antibodies comprise a heavy chain (HC) and a light chain (LC) that pair to form a binding domain comprising a heavy chain complementarity determining region 1 (HCDR1) comprising the amino acid sequence of SEQ ID NO: 111, a HCDR2 comprising the amino acid sequence of SEQ ID NO: 112, a HCDR3 comprising the amino acid sequence of SEQ ID NO: 113, a light chain complementarity determining region 1 (LCDR1) comprising the amino acid sequence of SEQ ID NO: 116, a LCDR2 comprising the amino acid sequence of DTS, and a LCDR3 comprising the amino acid sequence of SEQ ID NO: 117, and wherein the heavy chain further comprises a first CH2 domain, a second CH2 domain, and a third CH2 domain, wherein the first CH2
- polynucleotides further encode a CH3 domain linked to the C- terminus of the third CH2 domain.
- the polynucleotide can encode a first CH2 domain, a second CH2 domain, and a third CH2 domain each comprising the amino acid sequence of SEQ ID NO: 104.
- the polynucleotide encodes a first CH2 domain, a second CH2 domain, and a third CH2 domain each comprising the amino acid sequence of SEQ ID NO: 104.
- the polynucleotide can encode a first CH2 domain, a second CH2 domain, and a third CH2 domain each comprising an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 104.
- the polynucleotide can encode a first CH2 domain, a second CH2 domain, and a third CH2 domain each comprising an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 104.
- the polynucleotide in the polynucleotide encoding the first CH2 domain, the second CH2 domain, and the third CH2 domain, the polynucleotide comprises SEQ ID NO: 103.
- Attorney Docket No. TP385350WO1 [00423]
- the polynucleotide can encode a first hinge and a second hinge each comprising the amino acid sequence of SEQ ID NO: 102.
- the polynucleotide encodes a first hinge and a second hinge each comprising the amino acid sequence of SEQ ID NO: 102.
- the polynucleotide can encode a first hinge and a second hinge each comprising an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 102.
- the polynucleotide can encode a first hinge and a second hinge each comprising an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 102.
- the polynucleotide encoding each hinge comprises SEQ ID NO: 101.
- the polynucleotide can encode a first linker and a second linker comprising the amino acid sequence of GS, GGS, SEQ ID NO: 14, SEQ ID NO: 38, SEQ ID NO: 43, or SEQ ID NO: 44.
- the polynucleotide can encode the first and the second linkers comprising GS.
- the first and the second linkers can comprise GGS.
- the polynucleotide can encode the first and the second linkers comprising SEQ ID NO: 14.
- the polynucleotide can encode the first and the second linkers comprising SEQ ID NO: 38.
- the polynucleotide can encode the first and the second linkers comprising SEQ ID NO: 43.
- the polynucleotide can encode a first and a second linker comprising a sequence with at least 90% sequence identity to SEQ ID NO: 43.
- the polynucleotide can encode the first and the second linkers comprising SEQ ID NO: 44.
- the polynucleotide can encode a first and a second linker comprising a sequence with at least 90% sequence identity to SEQ ID NO: 44.
- the polynucleotide encodes an antibody that comprises a CH3 domain comprising the amino acid sequence of SEQ ID NO: 106.
- the polynucleotide encodes an antibody that comprises a CH3 domain having an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 106.
- the polynucleotide encodes an antibody that comprises a CH3 domain having an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 106. [00426] In some embodiments, the polynucleotide encodes an antibody comprising a heavy chain variable region having the polypeptide sequence of SEQ ID NO: 110 and a light chain variable region having the polypeptide sequence of SEQ ID NO: 115.
- the polynucleotide can encode an antibody comprising a heavy chain variable region having an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 110 and a light chain variable region having an amino acid sequence with at least 90% sequence identity to Attorney Docket No. TP385350WO1 SEQ ID NO: 115.
- the polynucleotide can encode an antibody comprising a heavy chain variable region having an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 110 and a light chain variable region having an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 115.
- the polynucleotide encodes an antibody comprising a heavy chain having a polypeptide sequence of SEQ ID NO: 119 and a light chain having the polypeptide sequence of SEQ ID NO: 121.
- the polynucleotide can encode an antibody comprising a heavy chain having an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 119 and a light chain having an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 121.
- the polynucleotide can encode an antibody comprising a heavy chain having an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 119 and a light chain having an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 121.
- the polynucleotide in the polynucleotide encoding the heavy chain and the light chain, the polynucleotide comprises SEQ ID NO: 118 and SEQ ID NO: 120.
- nucleic acid molecules comprising, consisting essentially of, or consisting of polynucleotides encoding antibodies that immunospecifically binds to TIGIT, wherein the antibodies comprise a heavy chain (HC) and a light chain (LC) that pair to form a binding domain comprising a heavy chain complementarity determining region 1 (HCDR1) comprising the amino acid sequence of SEQ ID NO: 146, a HCDR2 comprising the amino acid sequence of SEQ ID NO: 147, a HCDR3 comprising the amino acid sequence of SEQ ID NO: 148, a light chain complementarity determining region 1 (LCDR1) comprising the amino acid sequence of SEQ ID NO: 151, a LCDR2 comprising the amino acid sequence of SAS, and a LCDR3 comprising the amino acid sequence of SEQ ID NO: 152, and wherein the heavy chain further comprises a first CH2 domain, a second CH2 domain, and a third CH2 domain, wherein the first CH2
- polynucleotides further encode a CH3 domain linked to the C- terminus of the third CH2 domain.
- the polynucleotide can encode a first CH2 domain, a second CH2 domain, and a third CH2 domain each comprising the amino acid sequence of SEQ ID NO: 19.
- the polynucleotide encodes a first CH2 domain, a second CH2 domain, and a third CH2 domain each comprising the amino acid sequence of SEQ ID NO: 19.
- the polynucleotide can encode a first CH2 domain, a second CH2 domain, and a third CH2 domain each comprising an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 19.
- the polynucleotide can encode a first CH2 domain, a second CH2 domain, and a third CH2 domain each comprising an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 19.
- the polynucleotide comprises SEQ ID NO: 23.
- the polynucleotide can encode a first hinge and a second hinge each comprising the amino acid sequence of SEQ ID NO: 18.
- the polynucleotide encodes a first hinge and a second hinge each comprising the amino acid sequence of SEQ ID NO: 18.
- the polynucleotide can encode a first hinge and a second hinge each comprising an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 18.
- the polynucleotide can encode a first hinge and a second hinge each comprising an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 18.
- the polynucleotide encoding each hinge comprises SEQ ID NO: 22.
- the polynucleotide can encode a first hinge and a second hinge each comprising the amino acid sequence of SEQ ID NO: 48.
- the polynucleotide encodes a first hinge and a second hinge each comprising the amino acid sequence of SEQ ID NO: 48.
- the polynucleotide can encode a first hinge and a second hinge each comprising an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 48.
- the polynucleotide can encode a first hinge and a second hinge each comprising an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 48.
- the polynucleotide encoding each hinge comprises SEQ ID NO: 51.
- the polynucleotide can encode a first linker and a second linker comprising the amino acid sequence of GS, GGS, SEQ ID NO: 14, SEQ ID NO: 38, SEQ ID NO: 43, or SEQ ID NO: 44.
- the polynucleotide can encode the first and the second linkers comprising GS.
- the first and the second linkers can comprise GGS.
- the polynucleotide can encode the first and the second linkers comprising SEQ ID NO: 14.
- the polynucleotide can encode the Attorney Docket No.
- the polynucleotide can encode the first and the second linkers comprising SEQ ID NO: 43.
- the polynucleotide can encode a first and a second linker comprising a sequence with at least 90% sequence identity to SEQ ID NO: 43.
- the polynucleotide can encode the first and the second linkers comprising SEQ ID NO: 44.
- the polynucleotide can encode a first and a second linker comprising a sequence with at least 90% sequence identity to SEQ ID NO: 44.
- the polynucleotide encodes an antibody that comprises a CH3 domain comprising the amino acid sequence of SEQ ID NO: 20. In some embodiments, the polynucleotide encodes an antibody that comprises a CH3 domain having an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 20. In some embodiments, the polynucleotide encodes an antibody that comprises a CH3 domain having an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 20.
- the polynucleotide encodes an antibody comprising a heavy chain variable region having the polypeptide sequence of SEQ ID NO: 145 and a light chain variable region having the polypeptide sequence of SEQ ID NO: 150.
- the polynucleotide can encode an antibody comprising a heavy chain variable region having an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 145 and a light chain variable region having an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 150.
- the polynucleotide can encode an antibody comprising a heavy chain variable region having an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 145 and a light chain variable region having an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 150.
- the polynucleotide encodes an antibody comprising a heavy chain having a polypeptide sequence of SEQ ID NO: 154 and a light chain having the polypeptide sequence of SEQ ID NO: 156.
- the polynucleotide can encode an antibody comprising a heavy chain having an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 154 and a light chain having an amino acid sequence with at least 90% sequence identity to SEQ ID NO: 156.
- the polynucleotide can encode an antibody comprising a heavy chain having an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 154 and a light chain having an amino acid sequence with at least 95% sequence identity to SEQ ID NO: 156.
- the polynucleotide in the polynucleotide encoding Attorney Docket No. TP385350WO1 the heavy chain and the light chain, the polynucleotide comprises SEQ ID NO: 153 and SEQ ID NO: 155.
- vectors comprising any of the herein described nucleic acid molecules that comprise polynucleotides encoding antibodies.
- host cells comprising any of the herein disclosed vectors.
- Suitable host cells include eukaryotic cells and prokaryotic cells.
- An antibody or polypeptide according to the present disclosure may be produced using any known and well-established expression system and recombinant cell culturing technology, for example, by expression in bacterial hosts (prokaryotic systems) or eukaryotic systems such as yeasts, fungi, insect cells or mammalian cells.
- An antibody or polypeptide of the present disclosure may be produced in transgenic organisms such as a goat or a plant.
- An antibody or polypeptide of the present disclosure may also be produced by chemical synthesis.
- Disclosed herein are methods of detecting the presence of a target protein in a sample comprising, consisting essentially of, or consisting of applying any of the herein disclosed isolated polypeptides or any of the herein disclosed antibodies to a sample containing a target protein, incubating the isolated polypeptide or the antibody in the sample under conditions permitting the isolated polypeptide or the antibody to bind to the target protein and to form a bound isolated polypeptide or a bound antibody, and determining the presence of the bound isolated polypeptide or the bound antibody, thereby detecting the presence of the target protein.
- Disclosed herein are methods of detecting the presence of a target protein in a sample comprising, consisting essentially of, or consisting of applying any of the herein disclosed isolated polypeptides to a sample containing a target protein, incubating the isolated polypeptide in the sample under conditions permitting the isolated polypeptide to bind to the target protein and to form a bound isolated polypeptide, and determining the presence of the bound isolated polypeptide, thereby detecting the presence of the target protein.
- Disclosed herein are methods of detecting the presence of a target protein in a sample comprising, consisting essentially of, or consisting of applying any of the herein disclosed antibodies to a sample containing a target protein, incubating the antibody in the sample under conditions permitting the antibody to bind to the target protein Attorney Docket No. TP385350WO1 and to form a bound antibody, and determining the presence of the bound antibody, thereby detecting the presence of the target protein.
- the uses can comprise, consist essentially of, or consist of applying any of the herein disclosed isolated polypeptides or any of the herein disclosed antibodies to a sample containing a target protein, incubating the isolated polypeptide or the antibody in the sample under conditions permitting the isolated polypeptide or the antibody to bind to the target protein and to form a bound isolated polypeptide or a bound antibody, and determining the presence of the bound isolated polypeptide or the bound antibody, thereby detecting the presence of the target protein.
- Disclosed herein are uses of any of the herein disclosed isolated polypeptides in detecting the presence of a target protein in a sample.
- the uses can comprise, consist essentially of, or consist of applying any of the herein disclosed isolated polypeptides to a sample containing a target protein, incubating the isolated polypeptide in the sample under conditions permitting the isolated polypeptide to bind to the target protein and to form a bound isolated polypeptide, and determining the presence of the bound isolated polypeptide, thereby detecting the presence of the target protein.
- Disclosed herein are uses of any of the herein disclosed antibodies in detecting the presence of a target protein in a sample.
- the uses can comprise, consist essentially of, or consist of applying any of the herein disclosed antibodies to a sample containing a target protein, incubating the antibody in the sample under conditions permitting the antibody to bind to the target protein and to form a bound antibody, and determining the presence of the bound antibody, thereby detecting the presence of the target protein.
- a lesser amount of herein disclosed isolated polypeptide or antibody is required relative to an amount of a wild type isolated polypeptide or wild type antibody that would be required for generating a detectable signal in an equivalent method.
- a lesser amount of a herein disclosed isolated polypeptide can be required relative to an amount of a wild type isolated peptide that would be required for generating a detectable signal in an equivalent method.
- a lesser amount of a herein disclosed antibody can be required relative to an amount of a wild type antibody that would be required for generating a detectable signal in an equivalent method.
- the herein disclosed Attorney Docket No. TP385350WO1 isolated polypeptides and antibodies provide for enhanced sensitivity at lower concentrations which allows for robust signal to be generated at concentrations at which a wild type isolated polypeptide or wild type antibody would provide less signal.
- a lesser quantity of sample is used (e.g., rare clinical samples) but greater signal is still generated relative to an equivalent method that uses a wild type isolated polypeptide or wild type antibody.
- a lower concentration of target protein in the sample is able to be detected relative to an equivalent method that uses a wild type isolated polypeptide or wild type antibody.
- the herein disclosed isolated polypeptide or antibody has less background binding to cells that express Fc gamma receptors (Fc ⁇ R) relative to a wild type isolated polypeptide or a wild type antibody.
- the target protein is OCT4, Parkin, IDO1, FLAG-tag, pERK1/2, PSD-95, or TIGIT. In some embodiments of the methods or uses, the target protein is OCT4.
- the target protein is Parkin. In some embodiments of the methods or uses, the target protein is IDO1. In some embodiments of the methods or uses, the target protein is FLAG-tag. In some embodiments of the methods or uses, the target protein is pERK1/2. In some embodiments of the methods or uses, the target protein is PSD-95. In some embodiments of the methods or uses, the target is TIGIT. [00449] The target protein can be present in the sample in low abundance. Low abundance targets are expressed or present at low levels that fall below the limit of detection or that provide a very weak signal using a wild type antibody in standard immunoapplications and immunoassays.
- the presence of the bound isolated polypeptide or the bound antibody is determined by applying a secondary antibody to said sample, wherein the secondary antibody is labeled.
- the secondary antibody is the rabbit anti-mouse (RAM) of the present disclosure.
- the antibody is labeled.
- the label can be selected from a fluorophore, a fluorescent protein, a phosphorescent dye, a Attorney Docket No.
- the label can be a fluorophore.
- the label can be a fluorescent protein.
- the label can be a phosphorescent dye.
- the label can be a tandem dye.
- the label can be a polymer dye.
- the label can be a particle.
- the label can be an electron transfer agent.
- the label can be a hapten.
- the label can be an enzyme.
- the label can be a radioisotope.
- the label can be a chromophore.
- the label can be an oligonucleotide-based fluorescent dye.
- the label is a fluorophore.
- the fluorophore can be a pyrene, an anthracene, a naphthalene, an acridine, a stilbene, an indole or benzindole, an oxazole or benzoxazole, a thiazole or benzothiazole, an indacene, a 4-amino-7-nitrobenz-2- oxa-1, 3-diazole (NBD), a cyanine, a carbocyanine, a benzocyanine, a carbostyryl, a porphyrin, a salicylate, an anthranilate, an azulene, a perylene, a pyridine, a quinoline, a borapolyazaindacene, a xanthene, a rhodamine
- the fluorophore can be a pyrene.
- the fluorophore can be an anthracene.
- the fluorophore can be a naphthalene.
- the fluorophore can be an acridine.
- the fluorophore can be a stilbene.
- the fluorophore can be an indole.
- the fluorophore can be a benzindole.
- the fluorophore can be an oxazole.
- the fluorophore can be a benzoxazole.
- the fluorophore can be a thiazole.
- the fluorophore can be a benzothiazole.
- the fluorophore can be an indacene.
- the fluorophore can be a 4-amino-7-nitrobenz-2-oxa-1, 3-diazole (NBD).
- the fluorophore can be a cyanine.
- the fluorophore can be a carbocyanine.
- the fluorophore can be a benzocyanine.
- the fluorophore can be a carbostyryl.
- the fluorophore can be a porphyrin.
- the fluorophore can be a salicylate.
- the fluorophore can be an anthranilate.
- the fluorophore can be an azulene.
- the fluorophore can be a perylene.
- the fluorophore can be a pyridine.
- the fluorophore can be a quinoline.
- the fluorophore can be a borapolyazaindacene.
- the fluorophore can be a xanthene.
- the fluorophore can be a rhodamine.
- the fluorophore can be a silicon rhodamine.
- the fluorophore can be a fluorescein.
- the fluorophore can be a rhodol.
- the fluorophore can be a rosamine.
- the fluorophore can be an oxazine.
- the fluorophore can be a benzoxazine.
- the fluorophore can be a benzophenoxazine.
- the fluorophore can be a carbazine.
- the fluorophore can be a Attorney Docket No. TP385350WO1 phenalenone.
- the fluorophore can be a coumarin.
- the fluorophore can be a benzofuran.
- the fluorophore can be a benzophenalenone.
- the fluorophore can be a benzopyrilium.
- the fluorophore can be a styryl.
- the fluorophore can be a squarine.
- the fluorophore can be a resorufin.
- the fluorophore can be an anthrquinone.
- the fluorophore can be a quinazolinone.
- the fluorophore can be an oligonucleotide-based fluorescent dye.
- the fluorophore can be a conjugated polymer dye.
- the fluorophore can be a tandem dye.
- the label is a particle.
- the particle can be a semiconductor nanocrystal.
- the label is a hapten.
- the hapten can be a biotin or a biotin derivative.
- the hapten can be biotin.
- the hapten can be a biotin derivative.
- the label is an enzyme.
- the enzyme can be a peroxidase, a phosphatase, a glycosidase, and a luciferase.
- the enzyme can be a peroxidase.
- the enzyme can be a phosphatase.
- the enzyme can be a glycosidase.
- the enzyme can be a luciferase.
- the methods or uses can further comprise adding an enzymatic substrate selected from a chromogenic, a fluorogenic, and a chemiluminescent substrate.
- the enzymatic substate can be a chromogenic substrate.
- the enzymatic substate can be a fluorogenic substrate.
- the enzymatic substate can be a chemiluminescent substrate.
- the methods or uses can comprise detecting the labeled antibody utilizing flow cytometry, immunohistochemistry, immunocytochemistry, or western blotting.
- the labeled antibody can be detected utilizing flow cytometry.
- the labeled antibody can be detected utilizing immunohistochemistry.
- the labeled antibody can be detected utilizing immunocytochemistry.
- the labeled antibody can be detected utilizing western blotting.
- EXAMPLE 1 DESIGN, EXPRESSION AND ANALYSIS OF 2TDCH2-LFLEPS DESIGN OF RECOMBINANT ANTIBODIES Materials and Methods All materials were obtained from Thermo Fisher Scientific (Waltham, MA) unless otherwise noted.
- anti-OCT4-2TdCH2-LFLEPS anti-Parkin-2TdCH2-LFLEPS, anti-IDO1- 2TdCH2-LFLEPS, anti-FLAG-tag-2TdCH2-LFLEPS, anti-pERK1/2-2TdCH2, anti-PSD-95- 2TdCH2, anti-TIGIT 2TdCH2-LFLEPS, and Rabbit-anti-mouse IgG-2TdCH2-LFLEPS antibody overexpression constructs
- Heavy chain expression construct The backbone vector containing a rabbit 2TdCH2-LFLEPS antibody backbone was synthesized in pCDNA3.4 with the annotated restriction sites as illustrated in FIG.2A.
- the cells were fixed with 4% paraformaldehyde for 10 minutes, permeabilized with 0.5% Triton X-100 for 15 minutes and blocked with 2% BSA for 1 hour at room temperature. The cells were stained with the appropriate antibodies. Imaging was performed either at 60X or 40X or 20X magnification. Nuclei were stained using ProLongTM Diamond Antifade Mountant with DAPI (Product # P36962) or Hoescht (Product #H1399) and cytoskeletal F-actin staining was performed using Rhodamine Phalloidin (Product # R415).
- Detection was performed using Novex® ECL Chemiluminescent Substrate Reagent Kit (Product # WP20005) or Chemiluminescent SuperSignalTM West Dura Extended Duration Substrate (Product # 34075) and detected using the iBrightTM FL 1500 (Product # A44115).
- Immunohistochemistry To expose the target protein on the tissue section, heat-induced epitope retrieval was performed on de-paraffinized sections using eBioscienceTM IHC Antigen Retrieval Solution - High pH (10X) (Product # 00-4956-58) diluted to 1X solution in water in a decloaking chamber at 110 degrees Celsius for 15 minutes.
- the sections were blocked with 2% normal goat serum in 1X PBS for 45 minutes at room temperature and then probed with or without the indicated primary antibody at a 1:100 dilution in 0.1% normal goat serum overnight at 4 degrees Celsius in a humidified chamber. Detection was performed using Goat anti-Rabbit IgG (H+L) Highly Cross-Adsorbed Secondary Antibody, Alexa FluorTM Plus 488 (Product # A32731) at a dilution of 1:2,000 in 0.1% normal goat serum for 1 hour at room temperature. ReadyProbesTM Tissue Autofluorescence Quenching Kit (Product # R37630) was used to quench autofluorescence from the tissues.
- Protein of interest staining is represented as solid line histogram and unstained population as dashed line histogram (FIG.10 for Parkin, FIGs.12A- 12B for IDO1).
- Viable cells were used for analysis, as determined by Fixable Viability Dye eFluorTM 450 (Product # 65-0863-14) or Violet fluorescent reactive dye (L34964 A).
- the flow cytometry data was acquired using AttuneTM NxT Flow Cytometer (Product # A29004).
- Alexa FluorTM 488 dye SiteClickTM conjugation, first the carbohydrate domain of the antibody was modified, and azide attachment was performed using SiteClickTM Antibody Azido Modification Kit (Product# S10901). Then an sDIBO Alkyne label (Alexa FluorTM 647-sDIBO) dye was conjugated to the azide modified antibody using SiteClickTM sDIBO Alkyne Kits for Antibody Labeling Alexa Fluor 647 (Product# S10906). Excess dye was removed by passing the sample through ZebaTM Dye and Biotin Removal Spin Columns and Filter Plates, 2 mL (Product# A44299).
- the antibody conjugate was formulated in 1X Tris pH 7.0 (or TBS) with 0.02% sodium azide.
- List of antibodies used for immunoassays All antibodies were obtained from Thermo Fisher Scientific unless otherwise noted. Parental Parkin Recombinant Rabbit Monoclonal Antibody (21H24L9) (Product # 702785); Parental OCT4 Recombinant Rabbit Attorney Docket No.
- TP385350WO1 Monoclonal Antibody (3H8L6) (Product # 701756); Parental FLAG Tag Recombinant Rabbit Monoclonal Antibody (8H8L17) Recombinant Rabbit Monoclonal Antibody (8H8L17), Product # 701629), Parental IDO1 Recombinant Rabbit Monoclonal Antibody (7H8L17), (Product # 702743), Parental TIGIT Recombinant Mouse Monoclonal Antibody (MBSA43), (Product # 740010M), Parental PSD-95 Recombinant Mouse Monoclonal Antibody (7E3- 1B8), (Product # MA1-046); Goat anti-Rabbit IgG (Heavy chain), SuperclonalTM Recombinant Secondary Antibody, Alexa FluorTM 647, (Product # A27040); Goat anti- Rabbit IgG (H+L) Poly-HRP Secondary Antibody, HRP (Product # 32260); Goat anti-Rabbit IgG (Heavy
- siRNAs OCT4 specific siRNA (Silencer® select Product # s10871, s10873), Parkin specific siRNA (Silencer® select Product # s530941, s530942).
- results Generation of Rabbit and Mouse recombinant antibodies with Fc engineered backbone [00474] To evaluate the effect of the 2TdCH2 Fc engineered backbone, three rabbit antibodies were generated in which the heavy chain (HC) Fab region (SEQ ID NO: 8) and light chain (LC) Fab region (SEQ ID NO: 11) were taken from Parkin (Clone ID: 21H24L9, Product # 702785), or the HC Fab region (SEQ ID NO: 33) and LC Fab region (SEQ ID NO: 35) were taken from OCT4 (Clone ID: 3H8L6, Product # 701756), or the HC Fab region (SEQ ID NO: 78) and LC region (SEQ ID NO: 76) were taken from IDO1 (Cl
- TP385350WO1 cloned into vectors containing Rabbit 2TdCH2 with LFLEPS mutations (SEQ ID NO: 55) or without LFLEPS mutations (SEQ ID NO: 53).
- Antibodies in which these Fabs were cloned into vectors containing one additional Fc unit (1TdFc) comprising a nucleic acid having SEQ ID NO: 57 (encoding amino acid SEQ ID NO: 56) or two additional Fc units (2TdFc) comprising a nucleic acid having SEQ ID NO: 61 (encoding amino acid SEQ ID NO: 60) also were generated.
- FIGs.1A-1E Schematic representations of the different engineering designs are provided in FIGs.1A-1E.
- Mouse IgG1 Fc domain lacks the amino acids that mediate interaction with Fc ⁇ R1, therefore LFLEPS mutations would confer no additional benefits to background reduction for this Fc isotype. Therefore, mouse antibodies were generated in which the HC Fab region (SEQ ID NO: 97) was taken from Mouse pERK1/2 (Clone ID: MILAN8R, Product #14-9109-82) or the HC Fab region (SEQ ID NO: 122) was taken from Mouse PSD- 95 hybridoma antibody (Clone ID: 7E3-1B8, Product #MA1-046), and cloned into vectors Attorney Docket No. TP385350WO1 containing Mouse IgG12TdCH2. Schematic representation of the engineering design is provided in FIG.1D.
- Table 30 Samples Fold change normalized to WT 1TdFc 2.9 2TdFc 3.1 2TdCH2 3.8
- Table 31 Samples Fold change normalized to WT 2TdCH21ug/ml 4 2TdCH20.25ug/ml 3.4 1TdFC 1ug/ml 4.4 1TdFC 0.25ug/ml 10 2TdFC 1ug/ml 4.7 2TdFC 0.25ug/ml 9.4 [00479]
- Table 32 illustrates the fold change normalized to WT for the NTERA-2 blot in FIG.6A and Table 33 illustrates the fold change normalized to WT for the F9 blot in FIG.6A.
- Table 32 Samples Fold change normalized to WT OCT41TdFC 1ug/ml 4.1 OCT41TdFC 0.25ug/ml 3.99 OCT42TdFC 1 ug/ml 5.54 Attorney Docket No. TP385350WO1 OCT42TdFC 0.25 ug/ml 2.4 OCT42TdCH2 1 ug/ml 4.27 OCT42TdCH2 0.25 ug/ml 3.31
- Table 33 Samples Fold change normalized to WT OCT41TdFC 0.25ug/ml 3.089 OCT42TdFC 0.25ug/ml 3.096 OCT42TdCH2 0.25ug/ml 1.522 [00480] While the actual fold change might vary between experiments, cell/tissue models, and the antibody concentrations used, the results were significant as determined by the independent student’s T test.
- the sensitivity enhancements were comparable for 2TdCH2 and 2TdCH2-LFLEPS backbones (FIG.5C, FIG.6B) indicating that the 2TdCH2-LFLEPS backbone can be a universal backbone for different applications.
- the OCT42TdCH2 antibody was tested and compared with the parental OCT4 antibody in immunocytochemistry. It was found that engineered OCT4 2TdCH2 antibody demonstrated a ⁇ 1.5 fold increase in signal to noise over parental antibody even when used at 1/8th the concentration of the parental antibody (FIG.8A). It was also confirmed that the strong nuclear signal produced by the engineered antibody is specific using cells transfected with siRNA that are specific to OCT4 (FIG.8B).
- Parkin antibody with 2TdCH2 backbone has increased application coverage as compared to its parental antibody Attorney Docket No. TP385350WO1 [00481]
- the parental Parkin rabbit recombinant antibody is only sufficiently sensitive in Western blotting.
- the engineered Parkin 2TdCH2-LFLEPS antibody was sufficiently sensitive for a wider range of applications, this antibody was tested in additional applications.
- the engineered Parkin 2TdCH2-LFLEPS antibody produced a strong signal and a comparable staining pattern to a benchmark rabbit polyclonal Parkin antibody (Thermo Fisher Scientific, cat. no.
- FIG.9A and FIG.9B show the staining indices for the indicated antibodies for the flow cytometry analysis of FIG.10.
- Immunofluorescence staining was carried out with wild type, engineered IDO1 with LFLEPS mutations, and engineered IDO1 with 2TdCH2+LFLEPS mutations. Since there is no endogenous expression of IDO1 in CD64 overexpressing HEK293 cells, this experiment purely tracks the binding of the rabbit Fc to the Fc ⁇ R1, which represents background staining in immunoassays. As can be seen from Attorney Docket No. TP385350WO1 FIG.11, there was significant background binding of the IDO1 antibody to the cells in the case of wild type and 2TdCH2 engineered antibodies.
- LFLEPS LFLEPS
- 2TdCH2 LFLEPS 2TdCH2
- CD64-GFP overexpressing HEK293 cells were subjected to interferon-gamma (IFN ⁇ ) treatment which has been demonstrated to increase endogenous IDO1 expression in these cells (FIGs.13A-13B).
- IFN ⁇ interferon-gamma
- binding of anti-Ido1 antibodies will result from both the antibody recognizing its target antigen Ido1 (signal), as well as any non-specific binding of the anti-Ido11 Fc to CD64 (background).
- An increased staining of anti-Ido1 wild type antibody to CD64 transfected cells was observed compared to untransfected cells.
- TIGIT mouse-rabbit chimeric antibody with rabbit 2TdCH2+LFLEPS backbone demonstrates increased sensitivity
- a chimeric antibody was tested in which the Fab region of Mouse TIGIT IgG1 recombinant antibody was fused Attorney Docket No. TP385350WO1 with a rabbit 2TdCH2+LFLEPS backbone.
- Rabbit anti-mouse (RAM) secondary antibody with rabbit 2TdCH2+LFLEPS backbone demonstrates decreased background as compared to its parental antibody [00485]
- a secondary antibody Rabbit Anti-Mouse; RAM was created with LFLEPS and 2TdCH2 with or without LFLEPS and tested for background binding in immunofluorescence in HEK293 cells overexpressing CD64-GFP.
- the staining observed for the parental antibody was indicative of background binding of secondary antibody to the cells since this model does not have an antigen detecting primary antibody.
- the anti-OCT4-2TdCH2-LFLEPS engineered antibody was conjugated with Alexa FluorTM Plus 555 (AFP555) dye and compared the sensitivity to wild type anti- OCT4 antibody conjugated to Alexa Fluor Plus 555 dye in an immunofluorescence assay.
- AFP555 Alexa FluorTM Plus 555
- a 3-fold increase in signal intensity was observed (FIGs.18A-18B) in the engineered anti- OCT4-2TdCH2-LFLEPS-AFP555 conjugated antibody.
- a similar increase in sensitivity was observed with an engineered anti-OCT4-2TdCH2-LFLEPS antibody conjugated to Alexa FluorTM Plus 647 (FIGs.19A-19B).
- an anti-Parkin-2TdCH2-HRP antibody conjugate was compared with wild type anti-Parkin-HRP antibody conjugate in a western blot analysis. An increase in sensitivity was observed for the engineered anti-Parkin-2TdCH2-HRP antibody conjugate at both 4 and 8 molar ratios tested (FIG.20A). Finally, an anti-FLAG Tag-2TdCH2 antibody conjugated with either HRP or Biotin at different molar ratios was compared with the corresponding parental (wild type) anti-FLAG Tag antibody (Product # 701629) conjugates.
- Parkin-2TdCH2 and OCT4- 2TdCH2 antibodies with or without the LFLEPS mutations were conjugated to Alexa FluorTM 488 (AF488) dye using SiteClickTM chemistry and the degree of labeling was compared to the corresponding parental (wild type) antibodies.
- Alexa FluorTM 488 AF488
- a significant 2 fold increase in DOL was observed in all the engineered antibodies compared to the corresponding Parkin parental Attorney Docket No. TP385350WO1 antibody-AF488 conjugate (FIG.21A) and OCT4 parental antibody-AF488 conjugate (FIG. 21B).
- 2TdCH2 engineering also provides additional binding sites for different conjugation chemistries (lysine residues for amine-based chemistry or glycan residues for SiteClickTM based chemistry). It was also discovered that the 2TdCH2 engineered backbone increased the degree of labeling (DOL) and consequently increased the signal for conjugated versions of these antibodies. Thus, 2TdCH2 Fc engineering provides many advantages to sensitivity enhancement for both unconjugated and conjugated antibodies and this effect can be observed across different species (rabbit, mouse) as well as primary and secondary antibodies. [00491] Fc ⁇ R1 receptors are expressed on the surface of certain cell types such as monocytes, neutrophils and eosinophils.
- Fc domains such as those from rabbit and human IgG contain residues that bind to Fc ⁇ R1 and this is important for mediating effector functions such as Antibody Dependent Cellular Cytotoxicity (ADCC). While this interaction has proven useful for therapeutic antibodies, it results in background binding and thus increased noise and lower sensitivity in immunoassays such as immunofluorescence and flow cytometry using these cell models. Immunostaining applications of targets in these cell types with rabbit antibodies result in increased background staining that is usually reduced by an additional Fc-block step in the protocol. It has also been demonstrated that mutations of certain amino acids in the lower hinge and CH2 domain of certain IgGs, such as human IgG1, Attorney Docket No.
- TP385350WO1 Rabbit IgG, Mouse IgG2a and Rat IgG2b reduce or abolish the background binding of these antibodies to Fc receptors, thus increasing antibody sensitivity.
- the number of binding sites for Fc receptors increase, and hence this design when used for antibodies in flow cytometry analysis of cells expressing the Fc receptors will increase background staining.
- the LFLEPS mutations were introduced into the 2TdCH2 design to reduce to reduce or abolish Fc receptor binding.
- One of the advantages of the engineered antibodies of the present disclosure is the ease of scalability since it can be applied to any antibody once the engineered backbone for that particular species/isotype has been developed. Additionally, because the engineering is far away from the antigen binding site, there is no change to the paratope and the antibody clone can be maintained.
- This disclosure has demonstrated the utility of this engineered backbone in species-switched chimeric antibodies. For these species-switched chimeric antibodies, antigen binding sites can be grafted onto the engineered Fc backbone which can provide the same benefits of increased sensitivity in the new species. Another advantage is that the engineered backbone is translatable across species as it has been demonstrated for both rabbit and mouse IgG1.
- An isolated polypeptide comprising the amino acid sequence of Formula I: Z-(X-Yn-Zr)p-X, wherein • Z is a hinge, • X is a CH2 domain , • Y is a linker, • n is an integer of 1 or greater, • p is an integer of 2 or greater, and • r is an integer of 0 or 1.
- Formula I Z-(X-Yn-Zr)p-X, wherein • Z is a hinge, • X is a CH2 domain , • Y is a linker, • n is an integer of 1 or greater, • p is an integer of 2 or greater, and • r is an integer of 0 or 1.
- Y comprises an amino acid sequence of GS, GGS, at least 90% identity to SEQ ID NO: 14, at least 90% identity to SEQ ID NO: 38, at least 90% identity to SEQ ID NO: 43, or at least 90% identity to SEQ ID NO: 44.
- Y comprises an amino acid sequence of GS, GGS, at least 90% identity to SEQ ID NO: 14, at least 90% identity to SEQ ID NO: 38, at least 90% identity to SEQ ID NO: 43, or at least 90% identity to SEQ ID NO: 44.
- Z comprises SEQ ID NO: 18, SEQ ID NO: 48, or SEQ ID NO: 102;
- X comprises SEQ ID NO: 19, SEQ ID NO: 49, or SEQ ID NO: 104;
- Y comprises GS, GGS, SEQ ID NO: 14, SEQ ID NO: 38, SEQ ID NO: 43, or SEQ ID NO: 44;
- n is an integer of 1 or greater;
- p is an integer of 2 or greater; and
- r is an integer of 0 or 1.
- Embodiment 6. The isolated polypeptide of any one of embodiments 1 to 4, wherein Z comprises the amino acid sequence of SEQ ID NO: 48, X comprises the amino acid sequence of SEQ ID NO: 49, Y comprises the amino acid sequence of SEQ ID NO: 44, n is 1, and p is 2.
- Embodiment 8. The isolated polypeptide of any one of the preceding embodiments, wherein the isolated polypeptide is linked to a second polypeptide by one or more disulfide bonds, wherein the isolated polypeptide and the second polypeptide share the same amino acid sequence.
- Embodiment 11 The isolated polypeptide of any one of the preceding embodiments, wherein the isolated polypeptide further comprises a CH3 domain.
- Embodiment 12. The isolated polypeptide of embodiment 9, wherein the CH3 domain comprises the amino acid sequence of SEQ ID NO: 20, or SEQ ID NO: 106.
- Embodiment 13 An antibody comprising the isolated polypeptide of any one of the preceding embodiments linked to a Fab domain. Attorney Docket No. TP385350WO1 Embodiment 14.
- Embodiment 15 The antibody of embodiment 13 or 14, wherein the antibody has an increase in sensitivity of at least 1.5-fold compared to a corresponding wildtype antibody without the isolated polypeptide.
- Embodiment 16. The antibody of embodiment 13, wherein the Fab comprises a CH1 domain.
- the antibody of embodiment 16, wherein the CH1 domain comprises the amino acid sequence of SEQ ID NO: 17, SEQ ID NO: 100, or SEQ ID NO: 160.
- Embodiment 18 The antibody of embodiment 13, wherein the Fab comprises a Fab heavy chain and a Fab light chain that pair to form a binding domain.
- Embodiment 20 The antibody of embodiment 19, wherein the Fab heavy chain comprises a heavy chain complementarity determining region 1 (HCDR1) comprising the amino acid sequence of SEQ ID NO: 4, a HCDR2 comprising the amino acid sequence of SEQ ID NO: 5, and a HCDR3 comprising the amino acid sequence of SEQ ID NO: 6.
- Embodiment 21 The antibody of embodiment 19 or 20, wherein the Fab heavy chain comprises a variable region comprising the amino acid sequence of SEQ ID NO: 7.
- Embodiment 22 The antibody of any one of embodiments 19 to 21, wherein the Fab heavy chain comprises the amino acid sequence of SEQ ID NO: 9.
- HCDR1 heavy chain complementarity determining region 1
- the Fab light chain comprises a light chain complementarity determining region 1 (LCDR1) comprising the amino acid sequence of SEQ ID NO: 13, a LCDR2 comprising the Attorney Docket No. TP385350WO1 amino acid sequence RAS, and a LCDR3 comprising the amino acid sequence of SEQ ID NO: 15.
- Embodiment 24 The antibody of any one of embodiments 19 to 23, wherein the Fab light chain comprises a variable region comprising the amino acid sequence of SEQ ID NO: 16.
- Embodiment 25 The antibody of any one of embodiments 19 to 24, wherein the Fab light chain comprises the amino acid sequence of SEQ ID NO: 12.
- Embodiment 26 is a light chain complementarity determining region 1
- Embodiment 27 The antibody of any one of embodiments 19 to 25, wherein the isolated polypeptide comprises the amino acid sequence of SEQ ID NO: 3.
- Embodiment 27 The antibody of any one of embodiments 13 to 18, wherein the Fab immunospecifically binds to OCT4.
- Embodiment 28 The antibody of embodiment 27, wherein the Fab heavy chain comprises a heavy chain complementarity determining region 1 (HCDR1) comprising the amino acid sequence of SEQ ID NO: 29, a HCDR2 comprising the amino acid sequence of SEQ ID NO: 30, and a HCDR3 comprising the amino acid sequence of SEQ ID NO: 31.
- Embodiment 29 The antibody of embodiment 27 or embodiment 28, wherein the Fab heavy chain comprises a variable region comprising the amino acid sequence of SEQ ID NO: 32.
- Embodiment 30 The antibody of any one of embodiments 27 to 29, wherein the Fab heavy chain comprises the amino acid sequence of SEQ ID NO: 34.
- Embodiment 31 The antibody of any one of embodiments 27 to 30, wherein the Fab light chain comprises a light chain complementarity determining region 1 (LCDR1) comprising the amino acid sequence of SEQ ID NO: 37, a LCDR2 comprising the amino acid sequence GAS, and a LCDR3 comprising the amino acid sequence of SEQ ID NO: 39.
- LCDR1 light chain complementarity determining region 1
- a LCDR2 comprising the amino acid sequence GAS
- LCDR3 comprising the amino acid sequence of SEQ ID NO: 39.
- Embodiment 32 The antibody of any one of embodiments 27 to 31, wherein the Fab light chain comprises a variable region comprising the amino acid sequence of SEQ ID NO: 40.
- Embodiment 33 The antibody of any one of embodiments 27 to 29, wherein the
- the antibody of any one of embodiments 27 to 32, wherein the Fab light chain comprises the amino acid sequence of SEQ ID NO: 36.
- Embodiment 34 The antibody of any one of embodiments 27 to 33, wherein the isolated polypeptide comprises the amino acid sequence of SEQ ID NO: 28.
- Embodiment 35 The antibody of any one of embodiments 13 to 18, wherein the Fab immunospecifically binds to IDO1.
- Embodiment 36 The antibody of any one of embodiments 27 to 32, wherein the Fab light chain comprises the amino acid sequence of SEQ ID NO: 36.
- Embodiment 34 The antibody of any one of embodiments 27 to 33, wherein the isolated polypeptide comprises the amino acid sequence of SEQ ID NO: 28.
- Embodiment 35 The antibody of any one of embodiments 13 to 18, wherein the Fab immunospecifically binds to IDO1.
- Embodiment 36 The antibody of any one of embodiments 27 to 32, wherein the Fab light chain comprises the amino acid sequence of SEQ ID NO: 36.
- the Fab heavy chain comprises a heavy chain complementarity determining region 1 (HCDR1) comprising the amino acid sequence of SEQ ID NO: 66, a HCDR2 comprising the amino acid sequence of SEQ ID NO: 67, and a HCDR3 comprising the amino acid sequence of SEQ ID NO: 68.
- HCDR1 heavy chain complementarity determining region 1
- Embodiment 37 The antibody of embodiment 35 or 36, wherein the Fab heavy chain comprises a variable region comprising the amino acid sequence of SEQ ID NO: 65.
- Embodiment 38. The antibody of any one of embodiments 35 to 37, wherein the Fab heavy chain comprises the amino acid sequence of SEQ ID NO: 75.
- Embodiment 39 is a heavy chain complementarity determining region 1 (HCDR1) comprising the amino acid sequence of SEQ ID NO: 66, a HCDR2 comprising the amino acid sequence of SEQ ID NO: 67, and a HCDR3 comprising the amino acid sequence of SEQ ID NO:
- the Fab light chain comprises a light chain complementarity determining region 1 (LCDR1) comprising the amino acid sequence of SEQ ID NO: 72, a LCDR2 comprising the amino acid sequence of YAS, and a LCDR3 comprising the amino acid sequence of SEQ ID NO: 73.
- Embodiment 40 The antibody of any one of embodiments 35 to 39, wherein the Fab light chain comprises a variable region comprising the amino acid sequence of SEQ ID NO: 71. Attorney Docket No. TP385350WO1 Embodiment 41.
- the antibody of any one of embodiments 35 to 40, wherein the Fab light chain comprises the amino acid sequence of SEQ ID NO: 77.
- Embodiment 42 is a light chain complementarity determining region 1
- HCDR1 heavy chain complementarity determining region 1
- the antibody of embodiment 43 or 44, wherein the Fab heavy chain comprises a variable region comprising the amino acid sequence of SEQ ID NO: 162.
- Embodiment 46 The antibody of any one of embodiments 43 to 45, wherein the Fab heavy chain comprises the amino acid sequence of SEQ ID NO: 171.
- Embodiment 47 The antibody of any one of embodiments 43 to 46, wherein the Fab light chain comprises a light chain complementarity determining region 1 (LCDR1) comprising the amino acid sequence of SEQ ID NO: 168, a LCDR2 comprising the amino acid sequence of YAS, and a LCDR3 comprising the amino acid sequence of SEQ ID NO: 169.
- Embodiment 48 Embodiment 48.
- the antibody of any one of embodiments 43 to 47, wherein the Fab light chain comprises a variable region comprising the amino acid sequence of SEQ ID NO: 167.
- the antibody of any one of embodiments 43 to 48, wherein the Fab light chain comprises the amino acid sequence of SEQ ID NO: 172.
- the antibody of any one of embodiments 43 to 49, wherein the isolated polypeptide comprises the amino acid sequence of SEQ ID NO: 175.
- Attorney Docket No. TP385350WO1 Embodiment 51 The antibody of any one of embodiments 13 to 18, wherein the Fab is a Rabbit anti-Mouse IgG secondary antibody.
- the Fab heavy chain comprises a heavy chain complementarity determining region 1 (HCDR1) comprising the amino acid sequence of SEQ ID NO: 127, a HCDR2 comprising the amino acid sequence of SEQ ID NO: 128, and a HCDR3 comprising the amino acid sequence of SEQ ID NO: 129.
- HCDR1 heavy chain complementarity determining region 1
- Embodiment 53 The antibody of embodiment 51 or 52, wherein the Fab heavy chain comprises a variable region comprising the amino acid sequence of SEQ ID NO: 126.
- Embodiment 54 The antibody of any one of embodiments 51 to 53, wherein the Fab heavy chain comprises the amino acid sequence of SEQ ID NO: 135.
- Embodiment 55 is a heavy chain complementarity determining region 1 (HCDR1) comprising the amino acid sequence of SEQ ID NO: 127, a HCDR2 comprising the amino acid sequence of SEQ ID NO: 128, and a HCDR3 comprising the amino acid sequence of SEQ ID NO: 129.
- the Fab light chain comprises a light chain complementarity determining region 1 (LCDR1) comprising the amino acid sequence of SEQ ID NO: 132, a LCDR2 comprising the amino acid sequence GAS, and a LCDR3 comprising the amino acid sequence of SEQ ID NO: 133.
- Embodiment 56 The antibody of any one of embodiments 51 to 55, wherein the Fab light chain comprises a variable domain comprising the amino acid sequence of SEQ ID NO: 130.
- Embodiment 57 The antibody of any one of embodiments 51 to 56, wherein the Fab light chain comprises the amino acid sequence of SEQ ID NO: 137.
- HCDR1 heavy chain complementarity determining region 1
- Embodiment 62. The antibody of any one of embodiments 59 to 61, wherein the Fab heavy chain comprises the amino acid sequence of SEQ ID NO: 94.
- Embodiment 63. The antibody of any one of embodiments 59 to 62, wherein the Fab light chain comprises a light chain complementarity determining region 1 (LCDR1) comprising the amino acid sequence of SEQ ID NO: 91, a LCDR2 comprising the amino acid sequence of KVS, and a LCDR3 comprising the amino acid sequence of SEQ ID NO: 92.
- the antibody of embodiment 67 wherein the Fab heavy chain comprises a heavy chain complementarity determining region 1 (HCDR1) comprising the amino acid sequence of SEQ ID NO: 111, a HCDR2 comprising the amino acid sequence of SEQ ID NO: 112, and a HCDR3 comprising the amino acid sequence of SEQ ID NO: 113.
- HCDR1 heavy chain complementarity determining region 1
- HCDR2 comprising the amino acid sequence of SEQ ID NO: 112
- a HCDR3 comprising the amino acid sequence of SEQ ID NO: 113.
- Attorney Docket No. TP385350WO1 Embodiment 69 The antibody of embodiment 67 or embodiment 68, wherein the Fab heavy chain comprises a variable region comprising the amino acid sequence of SEQ ID NO: 110.
- Embodiment 70 The antibody of any one of embodiments 67 to 69, wherein the Fab heavy chain comprises the amino acid sequence of SEQ ID NO: 119.
- the Fab light chain comprises a light chain complementarity determining region 1 (LCDR1) comprising the amino acid sequence of SEQ ID NO: 116, a LCDR2 comprising the amino acid sequence of DTS, and a LCDR3 comprising the amino acid sequence of SEQ ID NO: 117.
- Embodiment 72 The antibody of any one of embodiments 67 to 71, wherein the Fab light chain comprises a variable domain comprising the amino acid sequence of SEQ ID NO: 115.
- Embodiment 73 The antibody of any one of embodiments 67 to 72, wherein the Fab light chain comprises the amino acid sequence of SEQ ID NO: 121.
- Embodiment 75 The antibody of any one of embodiments 67 to 73, wherein the isolated polypeptide comprises the amino acid sequence of SEQ ID NO: 123.
- Embodiment 75 The antibody of any one of embodiments 13 to 18, wherein the Fab immunospecifically binds to TIGIT.
- Embodiment 76 The antibody of embodiment 75, wherein the Fab heavy chain comprises a heavy chain complementarity determining region 1 (HCDR1) comprising the amino acid sequence of SEQ ID NO: 146, a HCDR2 comprising the amino acid sequence of SEQ ID NO: 147, and a HCDR3 comprising the amino acid sequence of SEQ ID NO: 148.
- HCDR1 heavy chain complementarity determining region 1
- Embodiment 77 Embodiment 77.
- the antibody of embodiment 75 or embodiment 76, wherein the Fab heavy chain comprises a variable region comprising the amino acid sequence of SEQ ID NO: 145.
- the antibody of any one of embodiments 75 to 77, wherein the Fab heavy chain comprises the amino acid sequence of SEQ ID NO: 154.
- the antibody of any one of embodiments 75 to 78, wherein the Fab light chain comprises a light chain complementarity determining region 1 (LCDR1) comprising the amino acid sequence of SEQ ID NO: 151, a LCDR2 comprising the amino acid sequence of SAS, and a LCDR3 comprising the amino acid sequence of SEQ ID NO: 152.
- Embodiment 81. The antibody of any one of embodiments 75 to 80, wherein the Fab light chain comprises the amino acid sequence of SEQ ID NO: 156.
- Embodiment 82. The antibody of any one of embodiments 75 to 81, wherein the isolated polypeptide comprises the amino acid sequence of SEQ ID NO: 158.
- the antibody of any one of embodiments 13 to 82, wherein the isolated polypeptide is an antibody with the isotype IgG.
- Embodiment 85. A nucleic acid encoding the isolated polypeptide of any one of embodiments 1-10 or the antibody of any one of embodiments 13-83.
- an antibody that immunospecifically binds to Parkin wherein the antibody comprises a heavy chain (HC) and a light chain (LC) that pair to form a binding domain comprising a heavy chain complementarity determining region 1 (HCDR1) comprising the amino acid sequence of SEQ ID NO: 4, a HCDR2 comprising the amino acid sequence of SEQ ID NO: 5, a HCDR3 comprising the amino acid sequence of SEQ ID NO: 6, a light chain complementarity determining region 1 (LCDR1) comprising the amino acid sequence of SEQ ID NO: 13, a LCDR2 Attorney Docket No.
- HCDR1 heavy chain complementarity determining region 1
- HCDR1 comprising the amino acid sequence of SEQ ID NO: 4
- a HCDR2 comprising the amino acid sequence of SEQ ID NO: 5
- a HCDR3 comprising the amino acid sequence of SEQ ID NO: 6
- LCDR1 light chain complementarity determining region 1
- TP385350WO1 comprising the amino acid sequence RAS, and a LCDR3 comprising the amino acid sequence of SEQ ID NO: 15, and wherein the heavy chain further comprises a first CH2 domain, a second CH2 domain, and a third CH2 domain, wherein the first CH2 domain and the second CH2 domain are connected by a first linker and an optional first hinge, and wherein the second CH2 domain and the third CH2 domain are connected by a second linker and an optional second hinge, and wherein the heavy chain further comprises a CH3 domain.
- Embodiment 87 The antibody of embodiment 86, wherein the first CH2 domain, the second CH2 domain, and the third CH2 domain each comprises the amino acid sequence of SEQ ID NO: 19 or SEQ ID NO: 49.
- Embodiment 88 The antibody of embodiment 86 or embodiment 87, wherein the first hinge and the second hinge each comprises the amino acid sequence of SEQ ID NO: 18 or SEQ ID NO: 48.
- Embodiment 89 The antibody of any one of embodiments 86 to 88, wherein the first linker and the second linker each comprises the amino acid sequence of GS, GGS, SEQ ID NO: 14, SEQ ID NO: 38, SEQ ID NO: 43, or SEQ ID NO: 44.
- Embodiment 90 The antibody of any one of embodiments 86 to 89, wherein the CH3 domain comprises the amino acid sequence of SEQ ID NO: 20.
- Embodiment 91 The antibody of any one of embodiments 86 to 89, wherein the CH3 domain comprises the amino acid sequence of SEQ ID NO: 20.
- Embodiment 92. The antibody of any one of embodiments 86 to 91, wherein the antibody comprises a heavy chain having a polypeptide sequence of SEQ ID NO: 3 and a light chain having the polypeptide sequence of SEQ ID NO: 12.
- Embodiment 94 Embodiment 94.
- Embodiment 95 The antibody of embodiment 94, wherein the first CH2 domain, the second CH2 domain, and the third CH2 domain each comprises the amino acid sequence of SEQ ID NO: 19 or SEQ ID NO: 49.
- Embodiment 96 The antibody of embodiment 94 or embodiment 95, wherein the first hinge and the second hinge each comprises the amino acid sequence of SEQ ID NO: 18 or SEQ ID NO: 48.
- Embodiment 97 The antibody of any one of embodiments 94 to 96, wherein the first linker and the second linker each comprises the amino acid sequence of GS, GGS, SEQ ID NO: 14, SEQ ID NO: 38, SEQ ID NO: 43, or SEQ ID NO: 44. Attorney Docket No.
- Embodiment 98 The antibody of any one of embodiments 94 to 97, wherein the CH3 domain comprises the amino acid sequence of SEQ ID NO: 20.
- Embodiment 99 The antibody of any one of embodiments 94 to 98, wherein the antibody comprises a heavy chain variable region having the polypeptide sequence of SEQ ID NO: 32 and a light chain variable region having the polypeptide sequence of SEQ ID NO: 40.
- Embodiment 100 The antibody of any one of embodiments 94 to 99, wherein the antibody comprises a heavy chain having a polypeptide sequence of SEQ ID NO: 28 and a light chain having the polypeptide sequence of SEQ ID NO: 36.
- Embodiment 101 The antibody of any one of embodiments 94 to 99, wherein the antibody comprises a heavy chain having a polypeptide sequence of SEQ ID NO: 28 and a light chain having the polypeptide sequence of SEQ ID NO: 36.
- an antibody that immunospecifically binds to IDO1 wherein the antibody comprises a heavy chain (HC) and a light chain (LC) that pair to form a binding domain comprising a heavy chain complementarity determining region 1 (HCDR1) comprising the amino acid sequence of SEQ ID NO: 66, a HCDR2 comprising the amino acid sequence of SEQ ID NO: 67, a HCDR3 comprising the amino acid sequence of SEQ ID NO: 68, a light chain complementarity determining region 1 (LCDR1) comprising the amino acid sequence of SEQ ID NO: 72, a LCDR2 comprising the amino acid sequence of YAS, and a LCDR3 comprising the amino acid sequence of SEQ ID NO: 73, and wherein the heavy chain further comprises a first CH2 domain, a second CH2 domain, and a third CH2 domain, wherein the first CH2 domain and the second CH2 domain are connected by a first linker and an optional first hinge, and wherein the second CH2 domain and the third CH2 domain are connected
- Embodiment 103 Attorney Docket No. TP385350WO1 Embodiment 103.
- Embodiment 105 The antibody of any one of embodiments 102 to 104, wherein the first linker and the second linker each comprises the amino acid sequence of GS, GGS, SEQ ID NO: 14, SEQ ID NO: 38, SEQ ID NO: 43, or SEQ ID NO: 44.
- Embodiment 106 The antibody of any one of embodiments 102 to 105, wherein the CH3 domain comprises the amino acid sequence of SEQ ID NO: 20.
- Embodiment 107 The antibody of any one of embodiments 102 to 106, wherein the antibody comprises a heavy chain variable region having the polypeptide sequence of SEQ ID NO: 65 and a light chain variable region having the polypeptide sequence of SEQ ID NO: 71.
- Embodiment 108. The antibody of any one of embodiments 102 to 107, wherein the antibody comprises a heavy chain having a polypeptide sequence of SEQ ID NO: 75 and a light chain having the polypeptide sequence of SEQ ID NO: 77.
- Embodiment 109 The antibody of any one of embodiments 102 to 105, wherein the CH3 domain comprises the amino acid sequence of SEQ ID NO: 20.
- Embodiment 107 The antibody of any one of embodiments 102 to 106, wherein the antibody comprises a heavy chain variable region having the polypeptide sequence of
- Embodiment 110. An antibody that immunospecifically binds to FLAG-tag, wherein the antibody comprises a heavy chain (HC) and a light chain (LC) that pair to form a binding domain comprising a heavy chain complementarity determining region 1 (HCDR1) comprising the amino acid sequence of SEQ ID NO: 163, a HCDR2 Attorney Docket No.
- TP385350WO1 comprising the amino acid sequence of SEQ ID NO: 164, a HCDR3 comprising the amino acid sequence of SEQ ID NO: 165, a light chain complementarity determining region 1 (LCDR1) comprising the amino acid sequence of SEQ ID NO: 168, a LCDR2 comprising the amino acid sequence of YAS, and a LCDR3 comprising the amino acid sequence of SEQ ID NO: 169, and wherein the heavy chain further comprises a first CH2 domain, a second CH2 domain, and a third CH2 domain, wherein the first CH2 domain and the second CH2 domain are connected by a first linker and an optional first hinge, and wherein the second CH2 domain and the third CH2 domain are connected by a second linker and an optional second hinge, and wherein the heavy chain further comprises a CH3 domain.
- LCDR1 light chain complementarity determining region 1
- Embodiment 111 The antibody of embodiment 110, wherein the first CH2 domain, the second CH2 domain, and the third CH2 domain each comprises the amino acid sequence of SEQ ID NO: 19 or SEQ ID NO: 49.
- Embodiment 112. The antibody of embodiment 110 or embodiment 111, wherein the first hinge and the second hinge each comprises the amino acid sequence of SEQ ID NO: 18 or SEQ ID NO: 48.
- Embodiment 113. The antibody of any one of embodiments 110 to 112, wherein the first linker and the second linker each comprises the amino acid sequence of GS, GGS, SEQ ID NO: 14, SEQ ID NO: 38, SEQ ID NO: 43, or SEQ ID NO: 44.
- Embodiment 115. The antibody of any one of embodiments 110 to 114, wherein the antibody comprises a heavy chain variable region having the polypeptide sequence of SEQ ID NO: 162 and a light chain variable region having the polypeptide sequence of SEQ ID NO: 167. Attorney Docket No. TP385350WO1 Embodiment 116.
- an antibody that is a Rabbit anti-Mouse IgG secondary antibody wherein the antibody comprises a heavy chain (HC) and a light chain (LC) that pair to form a binding domain comprising a heavy chain complementarity determining region 1 (HCDR1) comprising the amino acid sequence of SEQ ID NO: 127, a HCDR2 comprising the amino acid sequence of SEQ ID NO: 128, a HCDR3 comprising the amino acid sequence of SEQ ID NO: 129, a light chain complementarity determining region 1 (LCDR1) comprising the amino acid sequence of SEQ ID NO: 132, a LCDR2 comprising the amino acid sequence of GAS, and a LCDR3 comprising the amino acid sequence of SEQ ID NO: 133, and wherein the heavy chain further comprises a first CH2 domain, a second CH2 domain, and a third CH2 domain, wherein the first CH2 domain and the second CH2 domain are connected by a first linker and an optional first hinge, and wherein the second CH2 domain and the third CH
- Embodiment 119 The antibody of embodiment 118, wherein the first CH2 domain, the second CH2 domain, and the third CH2 domain each comprises the amino acid sequence of SEQ ID NO: 19 or SEQ ID NO: 49.
- Embodiment 120 The antibody of embodiment 118 or embodiment 119, wherein the first hinge and the second hinge each comprises the amino acid sequence of SEQ ID NO: 18 or SEQ ID NO: 48. Attorney Docket No. TP385350WO1 Embodiment 121.
- Embodiment 122 The antibody of any one of embodiments 118 to 121, wherein the CH3 domain comprises the amino acid sequence of SEQ ID NO: 20.
- Embodiment 123 The antibody of any one of embodiments 118 to 122, wherein the antibody comprises a heavy chain variable region having the polypeptide sequence of SEQ ID NO: 126 and a light chain variable region having the polypeptide sequence of SEQ ID NO: 131.
- Embodiment 124. The antibody of any one of embodiments 118 to 123, wherein the antibody comprises a heavy chain having a polypeptide sequence of SEQ ID NO: 135 and a light chain having the polypeptide sequence of SEQ ID NO: 137.
- Embodiment 125 The antibody of any one of embodiments 118 to 121, wherein the CH3 domain comprises the amino acid sequence of SEQ ID NO: 20.
- Embodiment 123 The antibody of any one of embodiments 118 to 122, wherein the antibody comprises a heavy chain variable region having the polypeptide
- an antibody that immunospecifically binds to pERK1/2 wherein the antibody comprises a heavy chain (HC) and a light chain (LC) that pair to form a binding domain comprising a heavy chain complementarity determining region 1 (HCDR1) comprising the amino acid sequence of SEQ ID NO: 85, a HCDR2 comprising the amino acid sequence of SEQ ID NO: 86, a HCDR3 comprising the amino acid sequence of SEQ ID NO: 87, a light chain complementarity determining region 1 (LCDR1) comprising the amino acid sequence of SEQ ID NO: 91, a LCDR2 comprising the amino acid sequence of KVS, and a LCDR3 comprising the amino acid sequence of SEQ ID NO: 92, and wherein the heavy chain further comprises a first CH2 domain, a second CH2 domain, and a third CH2 domain, wherein the first CH2 domain and the second CH2 domain are connected by a first linker and an optional first hinge, and wherein the second CH2 domain and the third CH2 domain
- TP385350WO1 are connected by a second linker and an optional second hinge, and wherein the heavy chain further comprises a CH3 domain.
- Embodiment 127. The antibody of embodiment 126, wherein the first CH2 domain, the second CH2 domain, and the third CH2 domain each comprises the amino acid sequence of SEQ ID NO: 104.
- Embodiment 128. The antibody of embodiment 126 or embodiment 127, wherein the first hinge and the second hinge each comprises the amino acid sequence of SEQ ID NO: 102.
- Embodiment 130. The antibody of any one of embodiments 126 to 129, wherein the CH3 domain comprises the amino acid sequence of SEQ ID NO: 106.
- the antibody of any one of embodiments 126 to 130, wherein the antibody comprises a heavy chain variable region having the polypeptide sequence of SEQ ID NO: 83 and a light chain variable region having the polypeptide sequence of SEQ ID NO: 90.
- Embodiment 132 Embodiment 132.
- Attorney Docket No. TP385350WO1 Embodiment 134 Attorney Docket No. TP385350WO1 Embodiment 134.
- an antibody that immunospecifically binds to PSD-95 wherein the antibody comprises a heavy chain (HC) and a light chain (LC) that pair to form a binding domain comprising a heavy chain complementarity determining region 1 (HCDR1) comprising the amino acid sequence of SEQ ID NO: 111, a HCDR2 comprising the amino acid sequence of SEQ ID NO: 112, a HCDR3 comprising the amino acid sequence of SEQ ID NO: 113, a light chain complementarity determining region 1 (LCDR1) comprising the amino acid sequence of SEQ ID NO: 116, a LCDR2 comprising the amino acid sequence of DTS, and a LCDR3 comprising the amino acid sequence of SEQ ID NO: 117, and wherein the heavy chain further comprises a first CH2 domain, a second CH2 domain, and a third CH2 domain, wherein the first CH2 domain and the second CH2 domain are connected by a first linker and an optional first hinge, and wherein the second CH2 domain and the third CH2 domain are connected by
- Embodiment 135. The antibody of embodiment 134, wherein the first CH2 domain, the second CH2 domain, and the third CH2 domain each comprises the amino acid sequence of SEQ ID NO: 104.
- Embodiment 136. The antibody of embodiment 134 or embodiment 135, wherein the first hinge and the second hinge each comprises the amino acid sequence of SEQ ID NO: 102.
- Embodiment 137. The antibody of any one of embodiments 134 to 136, wherein the first linker and the second linker each comprises the amino acid sequence of GS, GGS, SEQ ID NO: 14, SEQ ID NO: 38, SEQ ID NO: 43, or SEQ ID NO: 44.
- Embodiment 140 The antibody of any one of embodiments 134 to 139, wherein the antibody comprises a heavy chain having a polypeptide sequence of SEQ ID NO: 119 and a light chain having the polypeptide sequence of SEQ ID NO: 121.
- an antibody that immunospecifically binds to TIGIT comprising a heavy chain (HC) and a light chain (LC) that pair to form a binding domain comprising a heavy chain complementarity determining region 1 (HCDR1) comprising the amino acid sequence of SEQ ID NO: 146, a HCDR2 comprising the amino acid sequence of SEQ ID NO: 147, a HCDR3 comprising the amino acid sequence of SEQ ID NO: 148, a light chain complementarity determining region 1 (LCDR1) comprising the amino acid sequence of SEQ ID NO: 151, a LCDR2 comprising the amino acid sequence of SAS, and a LCDR3 comprising the amino acid sequence of SEQ ID NO: 152, and wherein the heavy chain further comprises a first CH2 domain, a second CH2 domain, and a third CH2 domain, wherein the first CH2 domain and the second CH2 domain are connected by a first linker and an optional first hinge, and wherein the second CH2 domain and the third CH2 domain are connected by
- Embodiment 143 The antibody of embodiment 1420, wherein the first CH2 domain, the second CH2 domain, and the third CH2 domain each comprises the amino acid sequence of SEQ ID NO: 19. Attorney Docket No. TP385350WO1 Embodiment 144.
- Embodiment 145. The antibody of any one of embodiments 142 to 144, wherein the first linker and the second linker each comprises the amino acid sequence of GS, GGS, SEQ ID NO: 14, SEQ ID NO: 38, SEQ ID NO: 43, or SEQ ID NO: 44.
- Embodiment 146 Embodiment 146.
- the antibody of any one of embodiments 142 to 145, wherein the CH3 domain comprises the amino acid sequence of SEQ ID NO: 20.
- Embodiment 147. The antibody of any one of embodiments 142 to 146, wherein the antibody comprises a heavy chain variable region having the polypeptide sequence of SEQ ID NO: 145 and a light chain variable region having the polypeptide sequence of SEQ ID NO: 150.
- Embodiment 148. The antibody of any one of embodiments 142 to 147, wherein the antibody comprises a heavy chain having a polypeptide sequence of SEQ ID NO: 154 and a light chain having the polypeptide sequence of SEQ ID NO: 156.
- Embodiment 150. The antibody of any one of embodiments 13 to 84 or 86 to 149, wherein the antibody provides at least a 1.5-fold increase in signal enhancement compared to a corresponding wild type antibody.
- Embodiment 151. The antibody of any one of embodiments 13 to 84 or 86 to 150, wherein the antibody provides at least a 1.5-fold reduction in background signal compared to a corresponding wild type antibody.
- Embodiment 152 A method of detecting the presence of a target protein in a sample, said method comprising: • applying the isolated polypeptide of any one of embodiments 1 to 12 or the antibody of any one of embodiments 13 to 84 or embodiments 86 to 151 to a sample containing a target protein, • incubating the isolated polypeptide or the antibody in the sample under conditions permitting the isolated polypeptide or the antibody to bind to the target protein and to form a bound isolated polypeptide or a bound antibody, and • determining the presence of the bound isolated polypeptide or the bound antibody, thereby detecting the presence of the target protein.
- Embodiment 153 Embodiment 153.
- Embodiment 152 wherein the isolated polypeptide or the antibody have less background binding to cells that express Fc gamma receptors relative to a wild type isolated polypeptide or a wild type antibody.
- Embodiment 154 The method of embodiment 152 or embodiment 153, wherein the target protein is OCT4, Parkin, IDO1, FLAG-tag, pERK1/2, PSD-95 or TIGIT.
- Embodiment 155 The method of any one of embodiments 152 to 154, wherein the target protein is present in the sample in low abundance.
- Embodiment 156 is
- Embodiment 157 The method of any one of embodiments 152 to 155, wherein the presence of the bound isolated polypeptide or the bound antibody is determined by applying a secondary antibody to said sample, wherein the secondary antibody is labeled.
- Embodiment 157 The method of any one of embodiments 152 to 155, wherein the antibody is labeled.
- Embodiment 158 The method of embodiment 156 or embodiment 157, wherein the label is selected from a fluorophore, a fluorescent protein, a phosphorescent dye, a tandem dye, a polymer dye, a particle, an electron transfer agent, a hapten, an enzyme, a radioisotope, a chromophore, and an oligonucleotide-based fluorescent dye.
- Embodiment 160 The method of embodiment 154, wherein the particle is a semiconductor nanocrystal.
- Embodiment 161. The method of embodiment 154, wherein the hapten is a biotin or a biotin derivative.
- Embodiment 162. The method of embodiment 154, wherein the enzyme is selected from a peroxidase, a phosphatase, a glycosidase, and a luciferase.
- Embodiment 163 The method of embodiment 162, wherein the method further comprises adding an enzymatic substrate selected from a chromogenic, a fluorogenic, and a chemiluminescent substrate.
- Embodiment 165 The method of any one of embodiments 152 to 163, wherein detecting the labeled antibody utilizes flow cytometry, immunohistochemistry, immunocytochemistry, or Western blotting.
- Embodiment 165 The method of any one of embodiments 152 to 164, wherein Y comprises the amino acid sequence of GS, GGS, SEQ ID NO: 14, SEQ ID NO: 38, SEQ ID NO: 43, or SEQ ID NO: 44.
- Embodiment 166 The method of any one of embodiments 152 to 165, wherein Z comprises the amino acid sequence of SEQ ID NO: 18, X comprises the amino acid Attorney Docket No.
- TP385350WO1 sequence of SEQ ID NO: 19 Y comprises the amino acid sequence of SEQ ID NO: 44, n is 1, and p is 2.
- Embodiment 167 The method of any one of embodiments 152 to 165, wherein Z comprises the amino acid sequence of SEQ ID NO: 48, X comprises the amino acid sequence of SEQ ID NO: 49, Y comprises the amino acid sequence of SEQ ID NO: 45, n is 1, and p is 2.
- Embodiment 169 The method of any one of embodiments 152 to 168, wherein Z comprises the amino acid sequence of SEQ ID NO: 102, X comprises the amino acid sequence of SEQ ID NO: 104, Y comprises the amino acid sequence of SEQ ID NO: 44, n is 1, and p is 2.
- Embodiment 169. The method of any one of embodiments 152 to 168, wherein the isolated polypeptide is linked to a second polypeptide by one or more disulfide bonds, wherein the isolated polypeptide and the second polypeptide share the same amino acid sequence.
- Embodiment 170 The method of embodiment 169, wherein the one or more disulfide bonds occur between the hinge of the isolated polypeptide and the hinge of the second polypeptide.
- Embodiment 172 The method of any one of embodiments 152 to 171, wherein the isolated polypeptide or antibody further comprises a CH3 domain.
- Embodiment 173. The method of embodiment 172, wherein the CH3 domain comprises the amino acid sequence of SEQ ID NO: 20, SEQ ID NO: 106, or SEQ ID NO: 141.
- Embodiment 174 The method of any one of embodiments 152 to 173, wherein the isolated polypeptide is linked to a Fab domain.
- the Fab comprises a CH1 domain.
- Embodiment 176 The method of embodiment 175, wherein the CH1 domain comprises the amino acid sequence of SEQ ID NO: 17 or SEQ ID NO: 100.
- Embodiment 177 The method of any one of embodiments 174 to 176, wherein the Fab comprises a Fab heavy chain and a Fab light chain that pair to form a binding domain.
- Embodiment 178 The method of any one of embodiments 174 to 177, wherein the Fab immunospecifically binds to Parkin.
- Embodiment 179 The method of any one of embodiments 152 to 174, wherein the Fab comprises a CH1 domain.
- Embodiment 176 The method of embodiment 175, wherein the CH1 domain comprises the amino acid sequence of SEQ ID NO: 17 or SEQ ID NO: 100.
- Embodiment 177 The method of any one of embodiments 174 to 176, wherein the Fab comprises a Fab heavy chain and a Fab light chain that pair
- the Fab heavy chain comprises a heavy chain complementarity determining region 1 (HCDR1) comprising the amino acid sequence of SEQ ID NO: 4, a HCDR2 comprising the amino acid sequence of SEQ ID NO: 5, and a HCDR3 comprising the amino acid sequence of SEQ ID NO: 6.
- HCDR1 heavy chain complementarity determining region 1
- HCDR2 comprising the amino acid sequence of SEQ ID NO: 5
- HCDR3 comprising the amino acid sequence of SEQ ID NO: 6.
- Embodiment 180 The method of embodiment 178 or embodiment 179, wherein the Fab heavy chain comprises a variable region comprising the amino acid sequence of SEQ ID NO: 7.
- Embodiment 181 The method of any one of embodiments 178 to 180, wherein the Fab heavy chain comprises the amino acid sequence of SEQ ID NO: 9. Embodiment 182.
- the Fab light chain comprises a light chain complementarity determining region 1 (LCDR1) comprising the amino acid sequence of SEQ ID NO: 13, a LCDR2 comprising the amino acid sequence RAS, and a LCDR3 comprising the amino acid sequence of SEQ ID NO: 15.
- Attorney Docket No. TP385350WO1 Embodiment 184 The method of any one of embodiments 178 to 183, wherein the Fab light chain comprises the amino acid sequence of SEQ ID NO: 12.
- Embodiment 185 Embodiment 185.
- Embodiment 186 The method of any one of embodiments 178 to 184, wherein the isolated polypeptide comprises the amino acid sequence of SEQ ID NO: 3.
- Embodiment 186 The method of any one of embodiments 174 to 177, wherein the Fab immunospecifically binds to OCT4.
- Embodiment 187 The method of embodiment 186, wherein the Fab heavy chain comprises a heavy chain complementarity determining region 1 (HCDR1) comprising the amino acid sequence of SEQ ID NO: 29, a HCDR2 comprising the amino acid sequence of SEQ ID NO: 30, and a HCDR3 comprising the amino acid sequence of SEQ ID NO: 31.
- HCDR1 heavy chain complementarity determining region 1
- Embodiment 188 Embodiment 188.
- the Fab heavy chain comprises a variable region comprising the amino acid sequence of SEQ ID NO: 32.
- Embodiment 189 The method of any one of embodiments 186 to 188, wherein the Fab heavy chain comprises the amino acid sequence of SEQ ID NO: 34.
- Embodiment 190 The method of any one of embodiments 186 to 189, wherein the Fab light chain comprises a light chain complementarity determining region 1 (LCDR1) comprising the amino acid sequence of SEQ ID NO: 37, a LCDR2 comprising the amino acid sequence GAS, and a LCDR3 comprising the amino acid sequence of SEQ ID NO: 39.
- LCDR1 light chain complementarity determining region 1
- the Fab heavy chain comprises a heavy chain complementarity determining region 1 (HCDR1) comprising the amino acid sequence of SEQ ID NO: 66, a HCDR2 comprising the amino acid sequence of SEQ ID NO: 67, and a HCDR3 comprising the amino acid sequence of SEQ ID NO: 68.
- HCDR1 heavy chain complementarity determining region 1
- Embodiment 196 The method of embodiment 194 or embodiment 195, wherein the Fab heavy chain comprises a variable region comprising the amino acid sequence of SEQ ID NO: 65.
- Embodiment 197 The method of any one of embodiments 194 to 196, wherein the Fab heavy chain comprises the amino acid sequence of SEQ ID NO: 75.
- the Fab light chain comprises a light chain complementarity determining region 1 (LCDR1) comprising the amino acid sequence of SEQ ID NO: 72, a LCDR2 comprising the amino acid sequence of YAS, and a LCDR3 comprising the amino acid sequence of SEQ ID NO: 73.
- Embodiment 200 The method of any one of embodiments 194 to 199 wherein the Fab light chain comprises the amino acid sequence of SEQ ID NO: 77.
- Embodiment 201 The method of any one of embodiments 194 to 199 wherein the Fab light chain comprises the amino acid sequence of SEQ ID NO: 77.
- the isolated polypeptide comprises the amino acid sequence of SEQ ID NO: 79.
- Attorney Docket No. TP385350WO1 Embodiment 202 The method of any one of embodiments 174 to 177, wherein the Fab immunospecifically binds to FLAG-tag.
- Embodiment 203 The method of embodiment 202, wherein the Fab heavy chain comprises a heavy chain complementarity determining region 1 (HCDR1) comprising the amino acid sequence of SEQ ID NO: 163, a HCDR2 comprising the amino acid sequence of SEQ ID NO: 164, and a HCDR3 comprising the amino acid sequence of SEQ ID NO: 165.
- HCDR1 heavy chain complementarity determining region 1
- Embodiment 204 Embodiment 204.
- Embodiment 207 The method of embodiment 202 or embodiment 203, wherein the Fab heavy chain comprises a variable region comprising the amino acid sequence of SEQ ID NO: 162.
- Embodiment 205 The method of any one of embodiments 202 to 204, wherein the Fab heavy chain comprises the amino acid sequence of SEQ ID NO: 171.
- Embodiment 206 The method of any one of embodiments 202 to 205, wherein the Fab light chain comprises a light chain complementarity determining region 1 (LCDR1) comprising the amino acid sequence of SEQ ID NO: 168, a LCDR2 comprising the amino acid sequence of YAS, and a LCDR3 comprising the amino acid sequence of SEQ ID NO: 169.
- Embodiment 207 Embodiment 207.
- Embodiment 208. The method of any one of embodiments 202 to 207 wherein the Fab light chain comprises the amino acid sequence of SEQ ID NO: 173.
- Embodiment 209. The method of any one of embodiments 202 to 208, wherein the isolated polypeptide comprises the amino acid sequence of SEQ ID NO: 175.
- the method of any one of embodiments 174 to 177, wherein the Fab is a Rabbit anti-Mouse IgG secondary antibody. Attorney Docket No. TP385350WO1 Embodiment 211.
- the Fab heavy chain comprises a heavy chain complementarity determining region 1 (HCDR1) comprising the amino acid sequence of SEQ ID NO: 127, a HCDR2 comprising the amino acid sequence of SEQ ID NO: 128, and a HCDR3 comprising the amino acid sequence of SEQ ID NO: 129.
- the method of embodiment 210 or embodiment 211, wherein the Fab heavy chain comprises a variable region comprising the amino acid sequence of SEQ ID NO: 126.
- Embodiment 213. The method of any one of embodiments 210 to 212, wherein the Fab heavy chain comprises the amino acid sequence of SEQ ID NO: 135.
- Embodiment 214 is a heavy chain complementarity determining region 1 (HCDR1) comprising the amino acid sequence of SEQ ID NO: 127, a HCDR2 comprising the amino acid sequence of SEQ ID NO: 128, and a HCDR3 comprising the amino acid sequence of SEQ ID NO: 129.
- the Fab light chain comprises a light chain complementarity determining region 1 (LCDR1) comprising the amino acid sequence of SEQ ID NO: 132, a LCDR2 comprising the amino acid sequence GAS, and a LCDR3 comprising the amino acid sequence of SEQ ID NO: 133.
- Embodiment 215. The method of any one of embodiments 210 to 214, wherein the Fab light chain comprises a variable region comprising the amino acid sequence of SEQ ID NO: 131.
- Embodiment 216 The method of any one of embodiments 210 to 215, wherein the Fab light chain comprises the amino acid sequence of SEQ ID NO: 137. Embodiment 217.
- the isolated polypeptide comprises the amino acid sequence of SEQ ID NO: 139.
- Embodiment 218. The method of any one of embodiments 174 to 177, wherein the Fab immunospecifically binds to pERK1/2.
- Embodiment 219. The method of embodiment 218, wherein the Fab heavy chain comprises a heavy chain complementarity determining region 1 (HCDR1) comprising the amino acid sequence of SEQ ID NO: 85, a HCDR2 comprising the amino acid Attorney Docket No. TP385350WO1 sequence of SEQ ID NO: 86, and a HCDR3 comprising the amino acid sequence of SEQ ID NO: 87.
- HCDR1 heavy chain complementarity determining region 1
- HCDR2 comprising the amino acid sequence of SEQ ID NO: 85
- a HCDR2 comprising the amino acid Attorney Docket No. TP385350WO1 sequence of SEQ ID NO: 86
- a HCDR3 comprising the amino acid sequence of SEQ ID
- the Fab heavy chain comprises a variable region comprising the amino acid sequence of SEQ ID NO: 84.
- Embodiment 221. The method of any one of embodiments 218 to 220, wherein the Fab heavy chain comprises the amino acid sequence of SEQ ID NO: 94.
- Embodiment 222. The method of any one of embodiments 218 to 220, wherein the Fab light chain comprises a light chain complementarity determining region 1 (LCDR1) comprising the amino acid sequence of SEQ ID NO: 91, a LCDR2 comprising the amino acid sequence of KVS, and a LCDR3 comprising the amino acid sequence of SEQ ID NO: 92.
- LCDR1 light chain complementarity determining region 1
- the Fab heavy chain comprises a heavy chain complementarity determining region 1 (HCDR1) comprising the amino acid sequence of SEQ ID NO: 111, a HCDR2 comprising the amino acid sequence of SEQ ID NO: 112, and a HCDR3 comprising the amino acid sequence of SEQ ID NO: 113.
- HCDR1 heavy chain complementarity determining region 1
- HCDR2 comprising the amino acid sequence of SEQ ID NO: 112
- a HCDR3 comprising the amino acid sequence of SEQ ID NO: 113.
- the Fab light chain comprises a light chain complementarity determining region 1 (LCDR1) comprising the amino acid sequence of SEQ ID NO: 116, a LCDR2 comprising the amino acid sequence of DTS, and a LCDR3 comprising the amino acid sequence of SEQ ID NO: 117.
- the method of any one of embodiments 226 to 230, wherein the Fab light chain comprises a variable region comprising the amino acid sequence of SEQ ID NO: 115.
- Embodiment 232. The method of any one of embodiments 226 to 231, wherein the Fab light chain comprises the amino acid sequence of SEQ ID NO: 121.
- the isolated polypeptide comprises the amino acid sequence of SEQ ID NO: 123.
- Embodiment 234. The method of any one of embodiments 174 to 177, wherein the Fab immunospecifically binds to TIGIT.
- Embodiment 235. The method of embodiment 234, wherein the Fab heavy chain comprises a heavy chain complementarity determining region 1 (HCDR1) comprising the amino acid sequence of SEQ ID NO: 146, a HCDR2 comprising the amino acid sequence of SEQ ID NO: 147, and a HCDR3 comprising the amino acid sequence of SEQ ID NO: 148.
- HCDR1 heavy chain complementarity determining region 1
- Embodiment 240. The method of any one of embodiments 234 to 239, wherein the Fab light chain comprises the amino acid sequence of SEQ ID NO: 156.
- Embodiment 241. The method of any one of embodiments 234 to 240, wherein the isolated polypeptide comprises the amino acid sequence of SEQ ID NO: 158.
- the method of any one of embodiments 152 to 241, wherein the isolated polypeptide is an antibody with the isotype IgG.
- a method of increasing sensitivity of an antibody comprising: introducing into a heavy chain of the antibody a polypeptide comprising amino acid sequence of Formula I: Z-(X-Yn-Zr)p-X, wherein • Z is a hinge, • X is a CH2 domain, • Y is a linker, • n is an integer of 1 or greater, • p is an integer of 2 or greater, and • r is an integer of 0 or 1, wherein the sensitivity of the antibody is increased by at least 1.5-fold compared to a corresponding wild type antibody.
- a polypeptide comprising amino acid sequence of Formula I: Z-(X-Yn-Zr)p-X, wherein • Z is a hinge, • X is a CH2 domain, • Y is a linker, • n is an integer of 1 or greater, • p is an integer of 2 or greater, and • r is an integer of 0 or 1, wherein the sensitivity of the antibody is increased by at least 1.5-fold compared to a
- Embodiment 243 further comprising introducing LFLEPS mutations into the amino acid sequence of X, wherein the LFLEPS mutations comprise L234F, L235E and P331S substitutions.
- Embodiment 245. The method of embodiment 243 or embodiment 244, wherein X comprises an amino acid sequence at least 90% identical to SEQ ID NO: 19, at least 90% identical to SEQ ID NO: 49, or at least 90% identical to SEQ ID NO: 104.
- Embodiment 246 The method of any one of embodiments 243 to 245, wherein Z comprises an amino acid sequence at least 90% identical to SEQ ID NO: 18, at least 90% identical to SEQ ID NO: 48, or at least 90% identical to SEQ ID NO: 102.
- Y comprises an amino acid sequence at least 90% identical to the amino acid sequence of GS, GGS, SEQ ID NO: 14, SEQ ID NO: 38, SEQ ID NO: 43, or SEQ ID NO: 44.
- Embodiment 248 comprises an amino acid sequence at least 90% identical to the amino acid sequence of GS, GGS, SEQ ID NO: 14, SEQ ID NO: 38, SEQ ID NO: 43, or SEQ ID NO: 44.
- a method of reducing background signal of an antibody comprising: introducing into a heavy chain of the antibody a polypeptide comprising amino acid sequence of Formula I: Z-(X-Yn-Zr)p-X, wherein • Z is a hinge, • X is a CH2 domain, • Y is a linker, • n is an integer of 1 or greater, • p is an integer of 2 or greater, and • r is an integer of 0 or 1, wherein the background signal of the antibody is decreased by at least 1.5-fold compared to a corresponding wild type antibody.
- a polypeptide comprising amino acid sequence of Formula I: Z-(X-Yn-Zr)p-X, wherein • Z is a hinge, • X is a CH2 domain, • Y is a linker, • n is an integer of 1 or greater, • p is an integer of 2 or greater, and • r is an integer of 0 or 1, wherein the background signal of the antibody is decreased by at least 1.5-fold compared to
- invention 248, further comprising introducing LFLEPS mutations into the amino acid sequence of X, wherein the LFLEPS mutations comprise L234F, L235E and P331S substitutions.
- Attorney Docket No. TP385350WO1 Embodiment 250 The method of embodiment 248 or embodiment 249, wherein X comprises an amino acid sequence at least 90% identical to SEQ ID NO: 19, at least 90% identical to SEQ ID NO: 49, or at least 90% identical to SEQ ID NO: 104.
- Embodiment 251. The method of any one of embodiments 248 to embodiment 250, wherein Z comprises an amino acid sequence at least 90% identical to SEQ ID NO: 18, at least 90% identical to SEQ ID NO: 48, or at least 90% identical to SEQ ID NO: 102.
- Embodiment 252 The method of any one of embodiments 248 to 251, wherein Y comprises an amino acid sequence at least 90% identical to the amino acid sequence of GS, GGS, SEQ ID NO: 14, SEQ ID NO: 38, SEQ ID NO: 43, or SEQ ID NO: 44.
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- Medicinal Chemistry (AREA)
- Molecular Biology (AREA)
- Proteomics, Peptides & Aminoacids (AREA)
- Life Sciences & Earth Sciences (AREA)
- Peptides Or Proteins (AREA)
Abstract
Description
Claims
Applications Claiming Priority (6)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| IN202341061917 | 2023-09-14 | ||
| IN202341061835 | 2023-09-14 | ||
| IN202341061835 | 2023-09-14 | ||
| IN202341061917 | 2023-09-14 | ||
| IN202441066590 | 2024-09-03 | ||
| IN202441066590 | 2024-09-03 |
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| Publication Number | Publication Date |
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| WO2025057225A1 true WO2025057225A1 (en) | 2025-03-20 |
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| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| PCT/IN2024/051736 Pending WO2025057225A1 (en) | 2023-09-14 | 2024-09-13 | Engineered antibodies and uses thereof |
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| Country | Link |
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| WO (1) | WO2025057225A1 (en) |
Citations (5)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| US20150353943A1 (en) * | 2011-02-11 | 2015-12-10 | Research Corporation Technologies, Inc. | Fusion proteins comprising immunoglobulin constant domain-derived scaffolds |
| US20200199229A1 (en) * | 2014-01-09 | 2020-06-25 | Genmab A/S | Humanized or chimeric cd3 antibodies |
| US20210017272A1 (en) * | 2017-09-22 | 2021-01-21 | Roche Diagnostics Operations, Inc. | Multivalent mono- or bispecific recombinant antibodies for analytic purpose |
| US20220073602A1 (en) * | 2015-10-05 | 2022-03-10 | Circle33 Llc | Antibodies with improved stability to intestinal digestion |
| US20230109312A1 (en) * | 2013-06-06 | 2023-04-06 | Magenta Therapeutics, Inc. | Novel linkers for antibody-drug conjugates and related compounds, compositions, and methods of use |
-
2024
- 2024-09-13 WO PCT/IN2024/051736 patent/WO2025057225A1/en active Pending
Patent Citations (5)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| US20150353943A1 (en) * | 2011-02-11 | 2015-12-10 | Research Corporation Technologies, Inc. | Fusion proteins comprising immunoglobulin constant domain-derived scaffolds |
| US20230109312A1 (en) * | 2013-06-06 | 2023-04-06 | Magenta Therapeutics, Inc. | Novel linkers for antibody-drug conjugates and related compounds, compositions, and methods of use |
| US20200199229A1 (en) * | 2014-01-09 | 2020-06-25 | Genmab A/S | Humanized or chimeric cd3 antibodies |
| US20220073602A1 (en) * | 2015-10-05 | 2022-03-10 | Circle33 Llc | Antibodies with improved stability to intestinal digestion |
| US20210017272A1 (en) * | 2017-09-22 | 2021-01-21 | Roche Diagnostics Operations, Inc. | Multivalent mono- or bispecific recombinant antibodies for analytic purpose |
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