WO2024188236A1 - Nucleic acid sequence for detecting corn plant dbn9229 and detection method therefor - Google Patents
Nucleic acid sequence for detecting corn plant dbn9229 and detection method therefor Download PDFInfo
- Publication number
- WO2024188236A1 WO2024188236A1 PCT/CN2024/081178 CN2024081178W WO2024188236A1 WO 2024188236 A1 WO2024188236 A1 WO 2024188236A1 CN 2024081178 W CN2024081178 W CN 2024081178W WO 2024188236 A1 WO2024188236 A1 WO 2024188236A1
- Authority
- WO
- WIPO (PCT)
- Prior art keywords
- seq
- corn
- nucleic acid
- sequence
- dna
- Prior art date
Links
- 150000007523 nucleic acids Chemical group 0.000 title claims abstract description 233
- 108091028043 Nucleic acid sequence Proteins 0.000 title claims abstract description 182
- 241001057636 Dracaena deremensis Species 0.000 title claims abstract description 147
- 238000001514 detection method Methods 0.000 title claims abstract description 42
- 240000008042 Zea mays Species 0.000 claims abstract description 404
- 235000002017 Zea mays subsp mays Nutrition 0.000 claims abstract description 390
- 235000005824 Zea mays ssp. parviglumis Nutrition 0.000 claims abstract description 344
- 235000005822 corn Nutrition 0.000 claims abstract description 344
- 230000009261 transgenic effect Effects 0.000 claims abstract description 319
- 108020004414 DNA Proteins 0.000 claims abstract description 188
- 230000000295 complement effect Effects 0.000 claims abstract description 146
- IAJOBQBIJHVGMQ-UHFFFAOYSA-N 2-amino-4-[hydroxy(methyl)phosphoryl]butanoic acid Chemical compound CP(O)(=O)CCC(N)C(O)=O IAJOBQBIJHVGMQ-UHFFFAOYSA-N 0.000 claims abstract description 83
- 239000004009 herbicide Substances 0.000 claims abstract description 77
- 239000005561 Glufosinate Substances 0.000 claims abstract description 67
- 102000053602 DNA Human genes 0.000 claims abstract description 28
- FWMNVWWHGCHHJJ-SKKKGAJSSA-N 4-amino-1-[(2r)-6-amino-2-[[(2r)-2-[[(2r)-2-[[(2r)-2-amino-3-phenylpropanoyl]amino]-3-phenylpropanoyl]amino]-4-methylpentanoyl]amino]hexanoyl]piperidine-4-carboxylic acid Chemical compound C([C@H](C(=O)N[C@H](CC(C)C)C(=O)N[C@H](CCCCN)C(=O)N1CCC(N)(CC1)C(O)=O)NC(=O)[C@H](N)CC=1C=CC=CC=1)C1=CC=CC=C1 FWMNVWWHGCHHJJ-SKKKGAJSSA-N 0.000 claims abstract description 18
- 241000196324 Embryophyta Species 0.000 claims description 159
- 239000000523 sample Substances 0.000 claims description 147
- 241000238631 Hexapoda Species 0.000 claims description 133
- 108090000623 proteins and genes Proteins 0.000 claims description 122
- 238000000034 method Methods 0.000 claims description 104
- 239000002773 nucleotide Substances 0.000 claims description 100
- 125000003729 nucleotide group Chemical group 0.000 claims description 98
- 239000013615 primer Substances 0.000 claims description 98
- 102000039446 nucleic acids Human genes 0.000 claims description 79
- 108020004707 nucleic acids Proteins 0.000 claims description 79
- 230000002363 herbicidal effect Effects 0.000 claims description 49
- 102000004169 proteins and genes Human genes 0.000 claims description 49
- 241000256251 Spodoptera frugiperda Species 0.000 claims description 47
- 235000018102 proteins Nutrition 0.000 claims description 46
- 235000016383 Zea mays subsp huehuetenangensis Nutrition 0.000 claims description 44
- 235000009973 maize Nutrition 0.000 claims description 44
- 238000009396 hybridization Methods 0.000 claims description 39
- 241000346285 Ostrinia furnacalis Species 0.000 claims description 37
- 238000003199 nucleic acid amplification method Methods 0.000 claims description 37
- 238000006243 chemical reaction Methods 0.000 claims description 35
- 230000006378 damage Effects 0.000 claims description 35
- 230000003321 amplification Effects 0.000 claims description 33
- 241000255967 Helicoverpa zea Species 0.000 claims description 25
- 241000409991 Mythimna separata Species 0.000 claims description 19
- 239000003550 marker Substances 0.000 claims description 19
- 108010082527 phosphinothricin N-acetyltransferase Proteins 0.000 claims description 19
- 239000002987 primer (paints) Substances 0.000 claims description 19
- 210000005069 ears Anatomy 0.000 claims description 16
- 241000607479 Yersinia pestis Species 0.000 claims description 15
- 241000566547 Agrotis ipsilon Species 0.000 claims description 14
- 108020001019 DNA Primers Proteins 0.000 claims description 13
- 239000003155 DNA primer Substances 0.000 claims description 13
- 235000005687 corn oil Nutrition 0.000 claims description 12
- 239000002285 corn oil Substances 0.000 claims description 12
- 238000011144 upstream manufacturing Methods 0.000 claims description 12
- LFQSCWFLJHTTHZ-UHFFFAOYSA-N Ethanol Chemical compound CCO LFQSCWFLJHTTHZ-UHFFFAOYSA-N 0.000 claims description 11
- 241001477928 Mythimna Species 0.000 claims description 11
- 238000002866 fluorescence resonance energy transfer Methods 0.000 claims description 10
- 238000004519 manufacturing process Methods 0.000 claims description 10
- 241000879145 Diatraea grandiosella Species 0.000 claims description 9
- 241001147398 Ostrinia nubilalis Species 0.000 claims description 9
- 241000985245 Spodoptera litura Species 0.000 claims description 9
- 238000004458 analytical method Methods 0.000 claims description 9
- 241000672182 Conogethes punctiferalis Species 0.000 claims description 7
- 235000007244 Zea mays Nutrition 0.000 claims description 7
- 238000009395 breeding Methods 0.000 claims description 7
- 235000012054 meals Nutrition 0.000 claims description 7
- 241000409326 Armiger Species 0.000 claims description 6
- 229920002261 Corn starch Polymers 0.000 claims description 6
- 241000255990 Helicoverpa Species 0.000 claims description 6
- 230000001488 breeding effect Effects 0.000 claims description 6
- 239000008120 corn starch Substances 0.000 claims description 6
- 239000002537 cosmetic Substances 0.000 claims description 6
- 235000013312 flour Nutrition 0.000 claims description 6
- 241001604418 Aromia bungii Species 0.000 claims description 5
- 229940089639 cornsilk Drugs 0.000 claims description 5
- 238000009629 microbiological culture Methods 0.000 claims description 5
- 238000010791 quenching Methods 0.000 claims description 5
- 239000001231 zea mays silk Substances 0.000 claims description 5
- 241000289763 Dasygaster padockina Species 0.000 claims description 4
- 235000013339 cereals Nutrition 0.000 claims description 4
- 239000000945 filler Substances 0.000 claims description 4
- 238000003306 harvesting Methods 0.000 claims description 4
- 238000002360 preparation method Methods 0.000 claims description 4
- 238000005507 spraying Methods 0.000 claims description 4
- 108010068370 Glutens Proteins 0.000 claims description 3
- 241001465754 Metazoa Species 0.000 claims description 3
- 235000021312 gluten Nutrition 0.000 claims description 3
- 235000012184 tortilla Nutrition 0.000 claims description 3
- GXCLVBGFBYZDAG-UHFFFAOYSA-N N-[2-(1H-indol-3-yl)ethyl]-N-methylprop-2-en-1-amine Chemical compound CN(CCC1=CNC2=C1C=CC=C2)CC=C GXCLVBGFBYZDAG-UHFFFAOYSA-N 0.000 claims description 2
- 241000482268 Zea mays subsp. mays Species 0.000 claims description 2
- 235000005911 diet Nutrition 0.000 claims description 2
- 230000037213 diet Effects 0.000 claims description 2
- 238000000855 fermentation Methods 0.000 claims description 2
- 230000004151 fermentation Effects 0.000 claims description 2
- 235000013310 margarine Nutrition 0.000 claims description 2
- 239000003264 margarine Substances 0.000 claims description 2
- 230000008654 plant damage Effects 0.000 claims description 2
- 229920006395 saturated elastomer Polymers 0.000 claims description 2
- 235000020357 syrup Nutrition 0.000 claims description 2
- 239000006188 syrup Substances 0.000 claims description 2
- 241001477931 Mythimna unipuncta Species 0.000 claims 3
- -1 ny Species 0.000 claims 3
- WQZGKKKJIJFFOK-DVKNGEFBSA-N alpha-D-glucose Chemical compound OC[C@H]1O[C@H](O)[C@H](O)[C@@H](O)[C@@H]1O WQZGKKKJIJFFOK-DVKNGEFBSA-N 0.000 claims 1
- 239000012472 biological sample Substances 0.000 abstract description 9
- 239000000047 product Substances 0.000 description 50
- 210000004027 cell Anatomy 0.000 description 48
- 238000003780 insertion Methods 0.000 description 48
- 230000037431 insertion Effects 0.000 description 48
- 230000014509 gene expression Effects 0.000 description 47
- 238000003752 polymerase chain reaction Methods 0.000 description 36
- 230000009466 transformation Effects 0.000 description 32
- 239000013598 vector Substances 0.000 description 31
- 108091093088 Amplicon Proteins 0.000 description 30
- 210000001519 tissue Anatomy 0.000 description 30
- 238000004166 bioassay Methods 0.000 description 20
- 239000012634 fragment Substances 0.000 description 19
- 230000002068 genetic effect Effects 0.000 description 17
- 238000011282 treatment Methods 0.000 description 16
- 241000589158 Agrobacterium Species 0.000 description 15
- 230000004544 DNA amplification Effects 0.000 description 15
- 238000011156 evaluation Methods 0.000 description 15
- 238000012408 PCR amplification Methods 0.000 description 14
- FAPWRFPIFSIZLT-UHFFFAOYSA-M Sodium chloride Chemical compound [Na+].[Cl-] FAPWRFPIFSIZLT-UHFFFAOYSA-M 0.000 description 14
- 238000002474 experimental method Methods 0.000 description 14
- 102000040430 polynucleotide Human genes 0.000 description 14
- 108091033319 polynucleotide Proteins 0.000 description 14
- 239000002157 polynucleotide Substances 0.000 description 14
- 238000012360 testing method Methods 0.000 description 14
- 239000000463 material Substances 0.000 description 13
- 101150113864 pat gene Proteins 0.000 description 12
- 210000002257 embryonic structure Anatomy 0.000 description 11
- 238000011081 inoculation Methods 0.000 description 11
- IJGRMHOSHXDMSA-UHFFFAOYSA-N Atomic nitrogen Chemical compound N#N IJGRMHOSHXDMSA-UHFFFAOYSA-N 0.000 description 10
- 239000002609 medium Substances 0.000 description 10
- 239000000203 mixture Substances 0.000 description 10
- 230000009418 agronomic effect Effects 0.000 description 9
- 150000003839 salts Chemical class 0.000 description 9
- 241000255777 Lepidoptera Species 0.000 description 8
- 230000029087 digestion Effects 0.000 description 8
- 239000013604 expression vector Substances 0.000 description 8
- 239000000499 gel Substances 0.000 description 8
- 239000012528 membrane Substances 0.000 description 8
- 108091008146 restriction endonucleases Proteins 0.000 description 8
- 108091029865 Exogenous DNA Proteins 0.000 description 7
- 108091034117 Oligonucleotide Proteins 0.000 description 7
- 108700019146 Transgenes Proteins 0.000 description 7
- 238000010586 diagram Methods 0.000 description 7
- 238000003050 experimental design method Methods 0.000 description 7
- 230000012010 growth Effects 0.000 description 7
- 230000001105 regulatory effect Effects 0.000 description 7
- 239000011780 sodium chloride Substances 0.000 description 7
- 238000013518 transcription Methods 0.000 description 7
- 230000035897 transcription Effects 0.000 description 7
- XLYOFNOQVPJJNP-UHFFFAOYSA-N water Chemical compound O XLYOFNOQVPJJNP-UHFFFAOYSA-N 0.000 description 7
- 241000193388 Bacillus thuringiensis Species 0.000 description 6
- 241000701489 Cauliflower mosaic virus Species 0.000 description 6
- LZZYPRNAOMGNLH-UHFFFAOYSA-M Cetrimonium bromide Chemical compound [Br-].CCCCCCCCCCCCCCCC[N+](C)(C)C LZZYPRNAOMGNLH-UHFFFAOYSA-M 0.000 description 6
- HEDRZPFGACZZDS-UHFFFAOYSA-N Chloroform Chemical compound ClC(Cl)Cl HEDRZPFGACZZDS-UHFFFAOYSA-N 0.000 description 6
- 238000007400 DNA extraction Methods 0.000 description 6
- KCXVZYZYPLLWCC-UHFFFAOYSA-N EDTA Chemical compound OC(=O)CN(CC(O)=O)CCN(CC(O)=O)CC(O)=O KCXVZYZYPLLWCC-UHFFFAOYSA-N 0.000 description 6
- 102000004190 Enzymes Human genes 0.000 description 6
- 108090000790 Enzymes Proteins 0.000 description 6
- HEMHJVSKTPXQMS-UHFFFAOYSA-M Sodium hydroxide Chemical compound [OH-].[Na+] HEMHJVSKTPXQMS-UHFFFAOYSA-M 0.000 description 6
- 229930006000 Sucrose Natural products 0.000 description 6
- CZMRCDWAGMRECN-UGDNZRGBSA-N Sucrose Chemical compound O[C@H]1[C@H](O)[C@@H](CO)O[C@@]1(CO)O[C@@H]1[C@H](O)[C@@H](O)[C@H](O)[C@@H](CO)O1 CZMRCDWAGMRECN-UGDNZRGBSA-N 0.000 description 6
- 238000003556 assay Methods 0.000 description 6
- 229940097012 bacillus thuringiensis Drugs 0.000 description 6
- 239000000872 buffer Substances 0.000 description 6
- 239000005018 casein Substances 0.000 description 6
- BECPQYXYKAMYBN-UHFFFAOYSA-N casein, tech. Chemical compound NCCCCC(C(O)=O)N=C(O)C(CC(O)=O)N=C(O)C(CCC(O)=N)N=C(O)C(CC(C)C)N=C(O)C(CCC(O)=O)N=C(O)C(CC(O)=O)N=C(O)C(CCC(O)=O)N=C(O)C(C(C)O)N=C(O)C(CCC(O)=N)N=C(O)C(CCC(O)=N)N=C(O)C(CCC(O)=N)N=C(O)C(CCC(O)=O)N=C(O)C(CCC(O)=O)N=C(O)C(COP(O)(O)=O)N=C(O)C(CCC(O)=N)N=C(O)C(N)CC1=CC=CC=C1 BECPQYXYKAMYBN-UHFFFAOYSA-N 0.000 description 6
- 235000021240 caseins Nutrition 0.000 description 6
- 239000003795 chemical substances by application Substances 0.000 description 6
- 238000003753 real-time PCR Methods 0.000 description 6
- 238000011084 recovery Methods 0.000 description 6
- 239000005720 sucrose Substances 0.000 description 6
- 239000006228 supernatant Substances 0.000 description 6
- 239000011782 vitamin Substances 0.000 description 6
- 229940088594 vitamin Drugs 0.000 description 6
- 229930003231 vitamin Natural products 0.000 description 6
- 235000013343 vitamin Nutrition 0.000 description 6
- 239000005631 2,4-Dichlorophenoxyacetic acid Substances 0.000 description 5
- QKNYBSVHEMOAJP-UHFFFAOYSA-N 2-amino-2-(hydroxymethyl)propane-1,3-diol;hydron;chloride Chemical compound Cl.OCC(N)(CO)CO QKNYBSVHEMOAJP-UHFFFAOYSA-N 0.000 description 5
- 229930186147 Cephalosporin Natural products 0.000 description 5
- 206010020649 Hyperkeratosis Diseases 0.000 description 5
- 241000256259 Noctuidae Species 0.000 description 5
- 108020004511 Recombinant DNA Proteins 0.000 description 5
- DBMJMQXJHONAFJ-UHFFFAOYSA-M Sodium laurylsulphate Chemical compound [Na+].CCCCCCCCCCCCOS([O-])(=O)=O DBMJMQXJHONAFJ-UHFFFAOYSA-M 0.000 description 5
- 239000004480 active ingredient Substances 0.000 description 5
- 230000027455 binding Effects 0.000 description 5
- 229940124587 cephalosporin Drugs 0.000 description 5
- 150000001780 cephalosporins Chemical class 0.000 description 5
- 238000002372 labelling Methods 0.000 description 5
- 239000007788 liquid Substances 0.000 description 5
- 229910052757 nitrogen Inorganic materials 0.000 description 5
- 230000008261 resistance mechanism Effects 0.000 description 5
- 238000012216 screening Methods 0.000 description 5
- 238000005406 washing Methods 0.000 description 5
- 108091032973 (ribonucleotides)n+m Proteins 0.000 description 4
- 108020005029 5' Flanking Region Proteins 0.000 description 4
- 108091026890 Coding region Proteins 0.000 description 4
- 102000016928 DNA-directed DNA polymerase Human genes 0.000 description 4
- 108010014303 DNA-directed DNA polymerase Proteins 0.000 description 4
- 238000002965 ELISA Methods 0.000 description 4
- 231100000674 Phytotoxicity Toxicity 0.000 description 4
- 108010076504 Protein Sorting Signals Proteins 0.000 description 4
- 238000002105 Southern blotting Methods 0.000 description 4
- 239000007984 Tris EDTA buffer Substances 0.000 description 4
- OJOBTAOGJIWAGB-UHFFFAOYSA-N acetosyringone Chemical compound COC1=CC(C(C)=O)=CC(OC)=C1O OJOBTAOGJIWAGB-UHFFFAOYSA-N 0.000 description 4
- MXWJVTOOROXGIU-UHFFFAOYSA-N atrazine Chemical compound CCNC1=NC(Cl)=NC(NC(C)C)=N1 MXWJVTOOROXGIU-UHFFFAOYSA-N 0.000 description 4
- 230000008859 change Effects 0.000 description 4
- 238000007796 conventional method Methods 0.000 description 4
- 230000000694 effects Effects 0.000 description 4
- 239000000284 extract Substances 0.000 description 4
- 235000013305 food Nutrition 0.000 description 4
- IAJOBQBIJHVGMQ-BYPYZUCNSA-N glufosinate-P Chemical compound CP(O)(=O)CC[C@H](N)C(O)=O IAJOBQBIJHVGMQ-BYPYZUCNSA-N 0.000 description 4
- 208000015181 infectious disease Diseases 0.000 description 4
- 238000011835 investigation Methods 0.000 description 4
- PHTQWCKDNZKARW-UHFFFAOYSA-N isoamylol Chemical compound CC(C)CCO PHTQWCKDNZKARW-UHFFFAOYSA-N 0.000 description 4
- 230000001404 mediated effect Effects 0.000 description 4
- 239000013612 plasmid Substances 0.000 description 4
- 239000002244 precipitate Substances 0.000 description 4
- 230000000171 quenching effect Effects 0.000 description 4
- 230000001568 sexual effect Effects 0.000 description 4
- 239000007787 solid Substances 0.000 description 4
- 239000000243 solution Substances 0.000 description 4
- 238000011426 transformation method Methods 0.000 description 4
- ZBMRKNMTMPPMMK-UHFFFAOYSA-N 2-amino-4-[hydroxy(methyl)phosphoryl]butanoic acid;azane Chemical compound [NH4+].CP(O)(=O)CCC(N)C([O-])=O ZBMRKNMTMPPMMK-UHFFFAOYSA-N 0.000 description 3
- 108020005065 3' Flanking Region Proteins 0.000 description 3
- QGZKDVFQNNGYKY-UHFFFAOYSA-O Ammonium Chemical compound [NH4+] QGZKDVFQNNGYKY-UHFFFAOYSA-O 0.000 description 3
- 239000003298 DNA probe Substances 0.000 description 3
- 239000005562 Glyphosate Substances 0.000 description 3
- 241000187747 Streptomyces Species 0.000 description 3
- 239000011543 agarose gel Substances 0.000 description 3
- 230000008901 benefit Effects 0.000 description 3
- WQZGKKKJIJFFOK-VFUOTHLCSA-N beta-D-glucose Chemical compound OC[C@H]1O[C@@H](O)[C@H](O)[C@@H](O)[C@@H]1O WQZGKKKJIJFFOK-VFUOTHLCSA-N 0.000 description 3
- 238000013461 design Methods 0.000 description 3
- 230000004069 differentiation Effects 0.000 description 3
- 238000001962 electrophoresis Methods 0.000 description 3
- 230000005669 field effect Effects 0.000 description 3
- 238000009472 formulation Methods 0.000 description 3
- XDDAORKBJWWYJS-UHFFFAOYSA-N glyphosate Chemical compound OC(=O)CNCP(O)(O)=O XDDAORKBJWWYJS-UHFFFAOYSA-N 0.000 description 3
- 229940097068 glyphosate Drugs 0.000 description 3
- 230000000749 insecticidal effect Effects 0.000 description 3
- 230000008488 polyadenylation Effects 0.000 description 3
- 230000008569 process Effects 0.000 description 3
- 238000003259 recombinant expression Methods 0.000 description 3
- 238000012163 sequencing technique Methods 0.000 description 3
- 239000001509 sodium citrate Substances 0.000 description 3
- NLJMYIDDQXHKNR-UHFFFAOYSA-K sodium citrate Chemical compound O.O.[Na+].[Na+].[Na+].[O-]C(=O)CC(O)(CC([O-])=O)C([O-])=O NLJMYIDDQXHKNR-UHFFFAOYSA-K 0.000 description 3
- 101710197633 Actin-1 Proteins 0.000 description 2
- 241000533083 Agrobacterium tumefaciens A6 Species 0.000 description 2
- 108700028369 Alleles Proteins 0.000 description 2
- FERIUCNNQQJTOY-UHFFFAOYSA-N Butyric acid Chemical compound CCCC(O)=O FERIUCNNQQJTOY-UHFFFAOYSA-N 0.000 description 2
- 239000004971 Cross linker Substances 0.000 description 2
- 238000001712 DNA sequencing Methods 0.000 description 2
- 230000004568 DNA-binding Effects 0.000 description 2
- WQZGKKKJIJFFOK-GASJEMHNSA-N Glucose Natural products OC[C@H]1OC(O)[C@H](O)[C@@H](O)[C@@H]1O WQZGKKKJIJFFOK-GASJEMHNSA-N 0.000 description 2
- 206010061217 Infestation Diseases 0.000 description 2
- KFZMGEQAYNKOFK-UHFFFAOYSA-N Isopropanol Chemical compound CC(C)O KFZMGEQAYNKOFK-UHFFFAOYSA-N 0.000 description 2
- 102000003960 Ligases Human genes 0.000 description 2
- 108090000364 Ligases Proteins 0.000 description 2
- 239000004677 Nylon Substances 0.000 description 2
- 108020005187 Oligonucleotide Probes Proteins 0.000 description 2
- 108700026244 Open Reading Frames Proteins 0.000 description 2
- 240000007594 Oryza sativa Species 0.000 description 2
- 235000007164 Oryza sativa Nutrition 0.000 description 2
- ISWSIDIOOBJBQZ-UHFFFAOYSA-N Phenol Chemical compound OC1=CC=CC=C1 ISWSIDIOOBJBQZ-UHFFFAOYSA-N 0.000 description 2
- XYFCBTPGUUZFHI-UHFFFAOYSA-N Phosphine Chemical compound P XYFCBTPGUUZFHI-UHFFFAOYSA-N 0.000 description 2
- 108020005120 Plant DNA Proteins 0.000 description 2
- 238000012356 Product development Methods 0.000 description 2
- 108010003581 Ribulose-bisphosphate carboxylase Proteins 0.000 description 2
- 108700029229 Transcriptional Regulatory Elements Proteins 0.000 description 2
- 239000008346 aqueous phase Substances 0.000 description 2
- 230000011681 asexual reproduction Effects 0.000 description 2
- 238000013465 asexual reproduction Methods 0.000 description 2
- 230000003115 biocidal effect Effects 0.000 description 2
- 210000000170 cell membrane Anatomy 0.000 description 2
- 230000002759 chromosomal effect Effects 0.000 description 2
- 238000010367 cloning Methods 0.000 description 2
- 230000001351 cycling effect Effects 0.000 description 2
- 230000034994 death Effects 0.000 description 2
- 235000013399 edible fruits Nutrition 0.000 description 2
- 239000011536 extraction buffer Substances 0.000 description 2
- 235000021306 genetically modified maize Nutrition 0.000 description 2
- 239000008103 glucose Substances 0.000 description 2
- 125000002887 hydroxy group Chemical group [H]O* 0.000 description 2
- 238000011534 incubation Methods 0.000 description 2
- SEOVTRFCIGRIMH-UHFFFAOYSA-N indole-3-acetic acid Chemical compound C1=CC=C2C(CC(=O)O)=CNC2=C1 SEOVTRFCIGRIMH-UHFFFAOYSA-N 0.000 description 2
- 230000010354 integration Effects 0.000 description 2
- 230000007653 larval development Effects 0.000 description 2
- 238000007169 ligase reaction Methods 0.000 description 2
- 108010083942 mannopine synthase Proteins 0.000 description 2
- 239000004570 mortar (masonry) Substances 0.000 description 2
- 239000013642 negative control Substances 0.000 description 2
- 238000007899 nucleic acid hybridization Methods 0.000 description 2
- 229920001778 nylon Polymers 0.000 description 2
- 239000002751 oligonucleotide probe Substances 0.000 description 2
- 238000009401 outcrossing Methods 0.000 description 2
- 125000005499 phosphonyl group Chemical group 0.000 description 2
- 238000003976 plant breeding Methods 0.000 description 2
- 230000010287 polarization Effects 0.000 description 2
- 230000010152 pollination Effects 0.000 description 2
- 210000001938 protoplast Anatomy 0.000 description 2
- 239000011535 reaction buffer Substances 0.000 description 2
- 235000009566 rice Nutrition 0.000 description 2
- 239000012882 rooting medium Substances 0.000 description 2
- 238000009331 sowing Methods 0.000 description 2
- 241000894007 species Species 0.000 description 2
- 238000013112 stability test Methods 0.000 description 2
- 239000008223 sterile water Substances 0.000 description 2
- 239000000725 suspension Substances 0.000 description 2
- 208000024891 symptom Diseases 0.000 description 2
- 238000010998 test method Methods 0.000 description 2
- 210000003462 vein Anatomy 0.000 description 2
- 150000003722 vitamin derivatives Chemical class 0.000 description 2
- DSSYKIVIOFKYAU-XCBNKYQSSA-N (R)-camphor Chemical compound C1C[C@@]2(C)C(=O)C[C@@H]1C2(C)C DSSYKIVIOFKYAU-XCBNKYQSSA-N 0.000 description 1
- HXKWSTRRCHTUEC-UHFFFAOYSA-N 2,4-Dichlorophenoxyaceticacid Chemical compound OC(=O)C(Cl)OC1=CC=C(Cl)C=C1 HXKWSTRRCHTUEC-UHFFFAOYSA-N 0.000 description 1
- IPFNRXLLJYWAGI-UHFFFAOYSA-N 2-amino-4-[hydroxy(methoxy)phosphoryl]butanoic acid Chemical compound COP(O)(=O)CCC(N)C(O)=O IPFNRXLLJYWAGI-UHFFFAOYSA-N 0.000 description 1
- 239000005972 6-Benzyladenine Substances 0.000 description 1
- 102000007469 Actins Human genes 0.000 description 1
- 108010085238 Actins Proteins 0.000 description 1
- 229920001817 Agar Polymers 0.000 description 1
- 229920000936 Agarose Polymers 0.000 description 1
- 244000105975 Antidesma platyphyllum Species 0.000 description 1
- 108010007730 Apyrase Proteins 0.000 description 1
- 102000007347 Apyrase Human genes 0.000 description 1
- 241000894006 Bacteria Species 0.000 description 1
- 108091005658 Basic proteases Proteins 0.000 description 1
- 239000002028 Biomass Substances 0.000 description 1
- 241000123650 Botrytis cinerea Species 0.000 description 1
- 108010077544 Chromatin Proteins 0.000 description 1
- 241000723346 Cinnamomum camphora Species 0.000 description 1
- 108020004705 Codon Proteins 0.000 description 1
- 108091035707 Consensus sequence Proteins 0.000 description 1
- IGXWBGJHJZYPQS-SSDOTTSWSA-N D-Luciferin Chemical compound OC(=O)[C@H]1CSC(C=2SC3=CC=C(O)C=C3N=2)=N1 IGXWBGJHJZYPQS-SSDOTTSWSA-N 0.000 description 1
- 102000012410 DNA Ligases Human genes 0.000 description 1
- 108010061982 DNA Ligases Proteins 0.000 description 1
- 108020003215 DNA Probes Proteins 0.000 description 1
- CYCGRDQQIOGCKX-UHFFFAOYSA-N Dehydro-luciferin Natural products OC(=O)C1=CSC(C=2SC3=CC(O)=CC=C3N=2)=N1 CYCGRDQQIOGCKX-UHFFFAOYSA-N 0.000 description 1
- 108010054576 Deoxyribonuclease EcoRI Proteins 0.000 description 1
- 239000005504 Dicamba Substances 0.000 description 1
- BJGNCJDXODQBOB-UHFFFAOYSA-N Fivefly Luciferin Natural products OC(=O)C1CSC(C=2SC3=CC(O)=CC=C3N=2)=N1 BJGNCJDXODQBOB-UHFFFAOYSA-N 0.000 description 1
- 229920002148 Gellan gum Polymers 0.000 description 1
- 108700007698 Genetic Terminator Regions Proteins 0.000 description 1
- 241001147381 Helicoverpa armigera Species 0.000 description 1
- 108010034791 Heterochromatin Proteins 0.000 description 1
- 108060001084 Luciferase Proteins 0.000 description 1
- 239000005089 Luciferase Substances 0.000 description 1
- DDWFXDSYGUXRAY-UHFFFAOYSA-N Luciferin Natural products CCc1c(C)c(CC2NC(=O)C(=C2C=C)C)[nH]c1Cc3[nH]c4C(=C5/NC(CC(=O)O)C(C)C5CC(=O)O)CC(=O)c4c3C DDWFXDSYGUXRAY-UHFFFAOYSA-N 0.000 description 1
- NWBJYWHLCVSVIJ-UHFFFAOYSA-N N-benzyladenine Chemical compound N=1C=NC=2NC=NC=2C=1NCC1=CC=CC=C1 NWBJYWHLCVSVIJ-UHFFFAOYSA-N 0.000 description 1
- 238000000636 Northern blotting Methods 0.000 description 1
- 102000008297 Nuclear Matrix-Associated Proteins Human genes 0.000 description 1
- 108010035916 Nuclear Matrix-Associated Proteins Proteins 0.000 description 1
- 108020004711 Nucleic Acid Probes Proteins 0.000 description 1
- 235000010676 Ocimum basilicum Nutrition 0.000 description 1
- 240000007926 Ocimum gratissimum Species 0.000 description 1
- 238000010222 PCR analysis Methods 0.000 description 1
- 108020002230 Pancreatic Ribonuclease Proteins 0.000 description 1
- 102000005891 Pancreatic ribonuclease Human genes 0.000 description 1
- 239000004952 Polyamide Substances 0.000 description 1
- 229920001213 Polysorbate 20 Polymers 0.000 description 1
- 108010068086 Polyubiquitin Proteins 0.000 description 1
- 238000012181 QIAquick gel extraction kit Methods 0.000 description 1
- VMHLLURERBWHNL-UHFFFAOYSA-M Sodium acetate Chemical compound [Na+].CC([O-])=O VMHLLURERBWHNL-UHFFFAOYSA-M 0.000 description 1
- 241000256248 Spodoptera Species 0.000 description 1
- 241000187191 Streptomyces viridochromogenes Species 0.000 description 1
- 108090000848 Ubiquitin Proteins 0.000 description 1
- 230000021736 acetylation Effects 0.000 description 1
- 238000006640 acetylation reaction Methods 0.000 description 1
- 239000002253 acid Substances 0.000 description 1
- 230000009471 action Effects 0.000 description 1
- IRLPACMLTUPBCL-FCIPNVEPSA-N adenosine-5'-phosphosulfate Chemical compound C1=NC=2C(N)=NC=NC=2N1[C@@H]1O[C@@H](CO[P@](O)(=O)OS(O)(=O)=O)[C@H](O)[C@H]1O IRLPACMLTUPBCL-FCIPNVEPSA-N 0.000 description 1
- 239000008272 agar Substances 0.000 description 1
- 210000004102 animal cell Anatomy 0.000 description 1
- 239000003242 anti bacterial agent Substances 0.000 description 1
- 229940088710 antibiotic agent Drugs 0.000 description 1
- 238000013459 approach Methods 0.000 description 1
- 230000001580 bacterial effect Effects 0.000 description 1
- JUHORIMYRDESRB-UHFFFAOYSA-N benzathine Chemical compound C=1C=CC=CC=1CNCCNCC1=CC=CC=C1 JUHORIMYRDESRB-UHFFFAOYSA-N 0.000 description 1
- 239000012620 biological material Substances 0.000 description 1
- 230000033228 biological regulation Effects 0.000 description 1
- UDSAIICHUKSCKT-UHFFFAOYSA-N bromophenol blue Chemical compound C1=C(Br)C(O)=C(Br)C=C1C1(C=2C=C(Br)C(O)=C(Br)C=2)C2=CC=CC=C2S(=O)(=O)O1 UDSAIICHUKSCKT-UHFFFAOYSA-N 0.000 description 1
- 239000004067 bulking agent Substances 0.000 description 1
- 229960000846 camphor Drugs 0.000 description 1
- 229930008380 camphor Natural products 0.000 description 1
- 238000004113 cell culture Methods 0.000 description 1
- 239000003153 chemical reaction reagent Substances 0.000 description 1
- 239000005081 chemiluminescent agent Substances 0.000 description 1
- 230000011088 chloroplast localization Effects 0.000 description 1
- 210000003483 chromatin Anatomy 0.000 description 1
- 239000013611 chromosomal DNA Substances 0.000 description 1
- 210000000349 chromosome Anatomy 0.000 description 1
- 238000003776 cleavage reaction Methods 0.000 description 1
- 230000001276 controlling effect Effects 0.000 description 1
- 239000008367 deionised water Substances 0.000 description 1
- 229910021641 deionized water Inorganic materials 0.000 description 1
- 230000009683 detection of insect Effects 0.000 description 1
- 238000011161 development Methods 0.000 description 1
- 230000018109 developmental process Effects 0.000 description 1
- IWEDIXLBFLAXBO-UHFFFAOYSA-N dicamba Chemical compound COC1=C(Cl)C=CC(Cl)=C1C(O)=O IWEDIXLBFLAXBO-UHFFFAOYSA-N 0.000 description 1
- 239000000539 dimer Substances 0.000 description 1
- 235000021186 dishes Nutrition 0.000 description 1
- 239000012153 distilled water Substances 0.000 description 1
- 239000002552 dosage form Substances 0.000 description 1
- 239000012154 double-distilled water Substances 0.000 description 1
- 229940079593 drug Drugs 0.000 description 1
- 239000003814 drug Substances 0.000 description 1
- 239000000975 dye Substances 0.000 description 1
- 238000005516 engineering process Methods 0.000 description 1
- 239000003623 enhancer Substances 0.000 description 1
- 238000001976 enzyme digestion Methods 0.000 description 1
- 210000002919 epithelial cell Anatomy 0.000 description 1
- ZMMJGEGLRURXTF-UHFFFAOYSA-N ethidium bromide Chemical compound [Br-].C12=CC(N)=CC=C2C2=CC=C(N)C=C2[N+](CC)=C1C1=CC=CC=C1 ZMMJGEGLRURXTF-UHFFFAOYSA-N 0.000 description 1
- 229960005542 ethidium bromide Drugs 0.000 description 1
- 210000003527 eukaryotic cell Anatomy 0.000 description 1
- 230000003203 everyday effect Effects 0.000 description 1
- 238000013401 experimental design Methods 0.000 description 1
- 238000000605 extraction Methods 0.000 description 1
- 238000011049 filling Methods 0.000 description 1
- 238000002875 fluorescence polarization Methods 0.000 description 1
- 239000007850 fluorescent dye Substances 0.000 description 1
- 238000001215 fluorescent labelling Methods 0.000 description 1
- 230000037406 food intake Effects 0.000 description 1
- 235000012631 food intake Nutrition 0.000 description 1
- 238000004108 freeze drying Methods 0.000 description 1
- 238000001502 gel electrophoresis Methods 0.000 description 1
- 238000012215 gene cloning Methods 0.000 description 1
- 238000010353 genetic engineering Methods 0.000 description 1
- 239000011521 glass Substances 0.000 description 1
- 102000005396 glutamine synthetase Human genes 0.000 description 1
- 108020002326 glutamine synthetase Proteins 0.000 description 1
- 235000009424 haa Nutrition 0.000 description 1
- 210000004458 heterochromatin Anatomy 0.000 description 1
- 230000008676 import Effects 0.000 description 1
- 230000006872 improvement Effects 0.000 description 1
- 238000007901 in situ hybridization Methods 0.000 description 1
- 238000000338 in vitro Methods 0.000 description 1
- 239000003617 indole-3-acetic acid Substances 0.000 description 1
- 239000004615 ingredient Substances 0.000 description 1
- 239000003112 inhibitor Substances 0.000 description 1
- 230000000968 intestinal effect Effects 0.000 description 1
- 230000001418 larval effect Effects 0.000 description 1
- 230000003902 lesion Effects 0.000 description 1
- 239000003446 ligand Substances 0.000 description 1
- 239000012160 loading buffer Substances 0.000 description 1
- 239000012139 lysis buffer Substances 0.000 description 1
- 210000001161 mammalian embryo Anatomy 0.000 description 1
- 239000011159 matrix material Substances 0.000 description 1
- 230000010534 mechanism of action Effects 0.000 description 1
- 108020004999 messenger RNA Proteins 0.000 description 1
- 244000005700 microbiome Species 0.000 description 1
- 239000002480 mineral oil Substances 0.000 description 1
- 235000010446 mineral oil Nutrition 0.000 description 1
- 238000002156 mixing Methods 0.000 description 1
- 230000004048 modification Effects 0.000 description 1
- 238000012986 modification Methods 0.000 description 1
- 238000010369 molecular cloning Methods 0.000 description 1
- 238000012544 monitoring process Methods 0.000 description 1
- 230000035772 mutation Effects 0.000 description 1
- 239000002102 nanobead Substances 0.000 description 1
- 239000002071 nanotube Substances 0.000 description 1
- 230000003472 neutralizing effect Effects 0.000 description 1
- 210000000299 nuclear matrix Anatomy 0.000 description 1
- 239000002853 nucleic acid probe Substances 0.000 description 1
- 210000004940 nucleus Anatomy 0.000 description 1
- 239000003921 oil Substances 0.000 description 1
- 235000019198 oils Nutrition 0.000 description 1
- 230000003287 optical effect Effects 0.000 description 1
- 210000000056 organ Anatomy 0.000 description 1
- 230000003204 osmotic effect Effects 0.000 description 1
- 239000002245 particle Substances 0.000 description 1
- 230000037361 pathway Effects 0.000 description 1
- 235000019371 penicillin G benzathine Nutrition 0.000 description 1
- 239000000575 pesticide Substances 0.000 description 1
- 229910000073 phosphorus hydride Inorganic materials 0.000 description 1
- 230000000885 phytotoxic effect Effects 0.000 description 1
- 239000004033 plastic Substances 0.000 description 1
- 229920002647 polyamide Polymers 0.000 description 1
- 239000000256 polyoxyethylene sorbitan monolaurate Substances 0.000 description 1
- 235000010486 polyoxyethylene sorbitan monolaurate Nutrition 0.000 description 1
- 229910052573 porcelain Inorganic materials 0.000 description 1
- 239000013641 positive control Substances 0.000 description 1
- 239000000843 powder Substances 0.000 description 1
- 210000001236 prokaryotic cell Anatomy 0.000 description 1
- 230000001737 promoting effect Effects 0.000 description 1
- 238000012175 pyrosequencing Methods 0.000 description 1
- 238000013441 quality evaluation Methods 0.000 description 1
- 238000000163 radioactive labelling Methods 0.000 description 1
- 238000003044 randomized block design Methods 0.000 description 1
- 239000011541 reaction mixture Substances 0.000 description 1
- 230000000306 recurrent effect Effects 0.000 description 1
- 230000008929 regeneration Effects 0.000 description 1
- 238000011069 regeneration method Methods 0.000 description 1
- 238000011160 research Methods 0.000 description 1
- 229920002477 rna polymer Polymers 0.000 description 1
- 239000012266 salt solution Substances 0.000 description 1
- 230000007017 scission Effects 0.000 description 1
- 230000010153 self-pollination Effects 0.000 description 1
- 230000035945 sensitivity Effects 0.000 description 1
- 239000011734 sodium Substances 0.000 description 1
- 239000001632 sodium acetate Substances 0.000 description 1
- 235000017281 sodium acetate Nutrition 0.000 description 1
- 239000002904 solvent Substances 0.000 description 1
- 239000007858 starting material Substances 0.000 description 1
- 239000000758 substrate Substances 0.000 description 1
- 230000004083 survival effect Effects 0.000 description 1
- 238000003786 synthesis reaction Methods 0.000 description 1
- 230000002123 temporal effect Effects 0.000 description 1
- 125000003396 thiol group Chemical group [H]S* 0.000 description 1
- 230000000451 tissue damage Effects 0.000 description 1
- 231100000827 tissue damage Toxicity 0.000 description 1
- 230000005030 transcription termination Effects 0.000 description 1
- 230000001131 transforming effect Effects 0.000 description 1
- 238000012250 transgenic expression Methods 0.000 description 1
- PIEPQKCYPFFYMG-UHFFFAOYSA-N tris acetate Chemical compound CC(O)=O.OCC(N)(CO)CO PIEPQKCYPFFYMG-UHFFFAOYSA-N 0.000 description 1
- 238000004383 yellowing Methods 0.000 description 1
- DGVVWUTYPXICAM-UHFFFAOYSA-N β‐Mercaptoethanol Chemical compound OCCS DGVVWUTYPXICAM-UHFFFAOYSA-N 0.000 description 1
Classifications
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6876—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
- C12Q1/6888—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms
- C12Q1/6895—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms for plants, fungi or algae
-
- A—HUMAN NECESSITIES
- A01—AGRICULTURE; FORESTRY; ANIMAL HUSBANDRY; HUNTING; TRAPPING; FISHING
- A01H—NEW PLANTS OR NON-TRANSGENIC PROCESSES FOR OBTAINING THEM; PLANT REPRODUCTION BY TISSUE CULTURE TECHNIQUES
- A01H1/00—Processes for modifying genotypes ; Plants characterised by associated natural traits
- A01H1/04—Processes of selection involving genotypic or phenotypic markers; Methods of using phenotypic markers for selection
- A01H1/045—Processes of selection involving genotypic or phenotypic markers; Methods of using phenotypic markers for selection using molecular markers
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
- C12N15/09—Recombinant DNA-technology
- C12N15/63—Introduction of foreign genetic material using vectors; Vectors; Use of hosts therefor; Regulation of expression
- C12N15/79—Vectors or expression systems specially adapted for eukaryotic hosts
- C12N15/82—Vectors or expression systems specially adapted for eukaryotic hosts for plant cells, e.g. plant artificial chromosomes (PACs)
- C12N15/8201—Methods for introducing genetic material into plant cells, e.g. DNA, RNA, stable or transient incorporation, tissue culture methods adapted for transformation
- C12N15/8202—Methods for introducing genetic material into plant cells, e.g. DNA, RNA, stable or transient incorporation, tissue culture methods adapted for transformation by biological means, e.g. cell mediated or natural vector
- C12N15/8205—Agrobacterium mediated transformation
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
- C12N15/09—Recombinant DNA-technology
- C12N15/63—Introduction of foreign genetic material using vectors; Vectors; Use of hosts therefor; Regulation of expression
- C12N15/79—Vectors or expression systems specially adapted for eukaryotic hosts
- C12N15/82—Vectors or expression systems specially adapted for eukaryotic hosts for plant cells, e.g. plant artificial chromosomes (PACs)
- C12N15/8241—Phenotypically and genetically modified plants via recombinant DNA technology
- C12N15/8261—Phenotypically and genetically modified plants via recombinant DNA technology with agronomic (input) traits, e.g. crop yield
- C12N15/8271—Phenotypically and genetically modified plants via recombinant DNA technology with agronomic (input) traits, e.g. crop yield for stress resistance, e.g. heavy metal resistance
- C12N15/8274—Phenotypically and genetically modified plants via recombinant DNA technology with agronomic (input) traits, e.g. crop yield for stress resistance, e.g. heavy metal resistance for herbicide resistance
- C12N15/8277—Phosphinotricin
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
- C12N15/09—Recombinant DNA-technology
- C12N15/63—Introduction of foreign genetic material using vectors; Vectors; Use of hosts therefor; Regulation of expression
- C12N15/79—Vectors or expression systems specially adapted for eukaryotic hosts
- C12N15/82—Vectors or expression systems specially adapted for eukaryotic hosts for plant cells, e.g. plant artificial chromosomes (PACs)
- C12N15/8241—Phenotypically and genetically modified plants via recombinant DNA technology
- C12N15/8261—Phenotypically and genetically modified plants via recombinant DNA technology with agronomic (input) traits, e.g. crop yield
- C12N15/8271—Phenotypically and genetically modified plants via recombinant DNA technology with agronomic (input) traits, e.g. crop yield for stress resistance, e.g. heavy metal resistance
- C12N15/8279—Phenotypically and genetically modified plants via recombinant DNA technology with agronomic (input) traits, e.g. crop yield for stress resistance, e.g. heavy metal resistance for biotic stress resistance, pathogen resistance, disease resistance
- C12N15/8286—Phenotypically and genetically modified plants via recombinant DNA technology with agronomic (input) traits, e.g. crop yield for stress resistance, e.g. heavy metal resistance for biotic stress resistance, pathogen resistance, disease resistance for insect resistance
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q2600/00—Oligonucleotides characterized by their use
- C12Q2600/13—Plant traits
-
- Y—GENERAL TAGGING OF NEW TECHNOLOGICAL DEVELOPMENTS; GENERAL TAGGING OF CROSS-SECTIONAL TECHNOLOGIES SPANNING OVER SEVERAL SECTIONS OF THE IPC; TECHNICAL SUBJECTS COVERED BY FORMER USPC CROSS-REFERENCE ART COLLECTIONS [XRACs] AND DIGESTS
- Y02—TECHNOLOGIES OR APPLICATIONS FOR MITIGATION OR ADAPTATION AGAINST CLIMATE CHANGE
- Y02A—TECHNOLOGIES FOR ADAPTATION TO CLIMATE CHANGE
- Y02A40/00—Adaptation technologies in agriculture, forestry, livestock or agroalimentary production
- Y02A40/10—Adaptation technologies in agriculture, forestry, livestock or agroalimentary production in agriculture
- Y02A40/146—Genetically Modified [GMO] plants, e.g. transgenic plants
Definitions
- the present invention relates to the field of plant molecular biology, in particular to the field of transgenic crop breeding in agricultural biotechnology research. Specifically, the present invention relates to a transgenic corn event DBN9229 with insect resistance and glufosinate herbicide tolerance, and a nucleic acid sequence and a detection method thereof for detecting whether a biological sample contains a specific transgenic corn event DBN9229.
- Maize (Zea mays L.) is a staple food crop in many parts of the world. Biotechnology has been applied to maize to improve its agronomic traits and quality. Insect resistance is an important agronomic trait in maize production, especially resistance to Lepidoptera insects, such as corn borer, cotton bollworm, oriental armyworm, cutworm, fall armyworm, etc. Maize resistance to Lepidoptera insects can be obtained by transgenic methods to express Lepidoptera insect resistance genes in maize plants. Another important agronomic trait is herbicide tolerance, such as the successful maize transformation events NK603 and GA21, which have been widely planted in major maize growing areas such as the United States.
- glufosinate herbicide has a different mechanism of action from glyphosate herbicide. It is a contact herbicide that kills and can be used as an effective means of managing glyphosate-resistant weeds. Maize tolerance to glufosinate herbicide can be obtained by transgenic methods to express glufosinate herbicide tolerance genes (such as pat) in maize plants.
- the expression level of the introduced gene can vary greatly between events; there may also be differences in the spatial or temporal pattern of expression, such as differences in the relative expression of the transgene between different plant tissues, which is manifested in the fact that the actual expression pattern may be inconsistent with the expression pattern expected based on the transcriptional regulatory elements in the introduced gene construct. Therefore, it is usually necessary to generate hundreds or thousands of different events and screen them for a single event with the expected transgene expression level and expression pattern for commercialization purposes. Events with the expected transgene expression level and expression pattern can be used to introgress the transgene into other genetic backgrounds through sexual outcrossing using conventional breeding methods. Progeny generated by such crosses retain the transgene expression characteristics of the original transformant. Applying this strategy can ensure reliable gene expression in many varieties that are well adapted to local growing conditions.
- the method for detecting a specific event will also help to comply with relevant regulations, such as the need to obtain formal approval and labeling of food derived from recombinant crops before being put on the market. It is possible to detect the presence of a transgenic by any well-known polynucleotide detection method, such as polymerase chain reaction (PCR) or DNA hybridization utilizing polynucleotide probes. These detection methods usually focus on commonly used genetic elements, such as promoters, terminators, marker genes, etc.
- PCR polymerase chain reaction
- the present application transforms exogenous DNA fragments into corn and obtains a transgenic corn event DBN9229 with a specific insertion position in the genome, which has good resistance to insects and good tolerance to glufosinate herbicides.
- the present application provides a nucleic acid sequence for detecting corn plant DBN9229 and a detection method thereof, and the detection method can accurately and quickly identify whether a biological sample contains a DNA molecule of the transgenic corn event DBN9229.
- the present invention provides a nucleic acid molecule or a combination thereof, wherein the nucleic acid sequence thereof comprises:
- the consecutive nucleotides are 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30 or more consecutive nucleotides.
- the complementary sequence is partially complementary or fully complementary to its parent sequence.
- the nucleic acid sequence comprises 22-25 consecutive nucleotides from positions 1-487 of SEQ ID NO:3 or its complementary sequence, and 22-25 consecutive nucleotides from positions 488-1105 of SEQ ID NO:3 or its complementary sequence; and/or 22-25 consecutive nucleotides from positions 1-397 of SEQ ID NO:4 or its complementary sequence, and 22-25 consecutive nucleotides from positions 398-860 of SEQ ID NO:4 or its complementary sequence.
- the nucleic acid sequence comprises SEQ ID NO:1 or its complementary sequence; and/or SEQ ID NO:2 or its complementary sequence.
- SEQ ID NO:3 is a nucleic acid fragment containing the 5' junction point generated by inserting the DBN11815 construct into the corn genome.
- nucleotides 1-487 of SEQ ID NO:3 are the sequence of the corn genome located upstream of the 5' junction point
- nucleotides 488-1105 of SEQ ID NO:3 are the DNA sequence of the DBN11815 construct.
- SEQ ID NO:1 is a nucleic acid fragment containing the 5' junction point generated by inserting the DBN11815 construct into the corn genome.
- nucleotides 1-11 of SEQ ID NO:1 are the sequence of the corn genome located upstream of the 5' junction point
- nucleotides 12-22 of SEQ ID NO:1 are the DNA sequence of the DBN11815 construct.
- SEQ ID NO:4 is a nucleic acid fragment containing a 3' junction point generated by inserting the DBN11815 construct into the corn genome.
- nucleotides 1-397 of SEQ ID NO:4 are the DNA sequence of the DBN11815 construct
- nucleotides 398-860 of SEQ ID NO:4 are the sequence of the corn genome located downstream of the 3' junction point.
- SEQ ID NO:2 is a nucleic acid fragment containing the 3' junction point generated by the DBN11815 construct inserted into the corn genome.
- the nucleotides 1-11 of SEQ ID NO:2 are the DNA sequence of the DBN11815 construct
- the nucleotides 12-22 of SEQ ID NO:2 are the sequence of the corn genome located downstream of the 3' junction point.
- the sequence can be a DNA template, primer or probe for detecting the presence of transgenic event DBN9229.
- the sequences can be a primer pair for detecting the presence of transgenic event DBN9229.
- the SEQ ID NO:1 or its complementary sequence is a 22-nucleotide sequence located near the insertion junction at the 5' end of the insertion sequence in the transgenic corn event DBN9229.
- the SEQ ID NO:1 or its complementary sequence spans the flanking genomic DNA sequence of the corn insertion site and the DNA sequence at the 5' end of the insertion sequence.
- the presence of the transgenic corn event DBN9229 can be identified by including the SEQ ID NO:1 or its complementary sequence.
- the SEQ ID NO:2 or its complementary sequence is a 22-nucleotide sequence located near the insertion junction at the 3' end of the insertion sequence in the transgenic corn event DBN9229.
- the SEQ ID NO:2 or its complementary sequence spans the DNA sequence at the 3' end of the insertion sequence and the flanking genomic DNA sequence of the corn insertion site.
- the SEQ ID NO:2 or its complementary sequence spans the DNA sequence at the 3' end of the insertion sequence and the flanking genomic DNA sequence of the corn insertion site.
- the presence of SEQ ID NO: 2 or its complementary sequence can be identified as the presence of transgenic corn event DBN9229.
- the nucleic acid sequence comprises SEQ ID NO:3 or its complementary sequence, and/or SEQ ID NO:4 or its complementary sequence.
- the nucleic acid sequence may be at least 11 or more continuous polynucleotides (first nucleic acid sequence) of any part of the T-DNA insertion sequence in the SEQ ID NO:3 or its complementary sequence, or at least 11 or more continuous polynucleotides (second nucleic acid sequence) of any part of the 5' flanking corn genomic DNA region in the SEQ ID NO:3 or its complementary sequence.
- the nucleic acid sequence may further be homologous to or complementary to a part of the SEQ ID NO:3 that includes the complete SEQ ID NO:1.
- these nucleic acid sequences can be used as a DNA primer pair in a DNA amplification method for producing an amplification product.
- the amplification product produced in the DNA amplification method using the DNA primer pair is an amplification product including SEQ ID NO:1
- the presence of the transgenic corn event DBN9229 or its progeny can be diagnosed.
- the SEQ ID NO:3 or its complementary sequence is a sequence with a length of 1105 nucleotides located near the insertion junction site at the 5' end of the T-DNA insertion sequence in the transgenic corn event DBN9229.
- the SEQ ID NO:3 or its complementary sequence consists of 487 nucleotides of the 5' flanking sequence of the corn genome (nucleotides 1-487 of SEQ ID NO:3), 197 nucleotides of the DBN11815 construct DNA sequence (nucleotides 488-684 of SEQ ID NO:3), 195 nucleotides of the t35S cauliflower mosaic virus transcription terminator DNA sequence (nucleotides 685-879 of SEQ ID NO:3) and 226 nucleotides of the nucleotide sequence encoding the glufosinate herbicide tolerance agent PAT protein (nucleotides 880-1105 of SEQ ID NO:3).
- the presence of the transgenic corn event DBN9229 can be identified by the presence of SEQ ID NO:3 or its complementary sequence.
- the nucleic acid sequence may be at least 11 or more continuous polynucleotides (third nucleic acid sequence) of any part of the T-DNA insertion sequence in the SEQ ID NO:4 or its complementary sequence, or at least 11 or more continuous polynucleotides (fourth nucleic acid sequence) of any part of the 3' flanking corn genomic DNA region in the SEQ ID NO:4 or its complementary sequence.
- the nucleic acid sequence may further be homologous to or complementary to a portion of the SEQ ID NO:4 that includes the complete SEQ ID NO:2.
- the amplified product produced in the DNA amplification method using the DNA primer pairs is an amplified product including SEQ ID NO:2, the presence of the transgenic corn event DBN9229 or its progeny can be diagnosed.
- the SEQ ID NO:4 or its complementary sequence is a sequence of 860 nucleotides located near the T-DNA insertion junction at the 3' end of the insertion sequence in the transgenic corn event DBN9229.
- the SEQ ID NO:4 or its complementary sequence consists of 17 nucleotides of the RB7 nuclear matrix attachment region sequence (nucleotides 1-17 of SEQ ID NO:4), 380 nucleotides of the DBN11815 construct DNA
- the transgenic corn event DBN9229 can be identified by comprising SEQ ID NO:4 or its complementary sequence.
- one skilled in the art can determine whether the DNA of transgenic corn event DBN9229 is present by detecting the presence of the following nucleic acid molecules in corn plants or parts, seeds, cells or progeny thereof.
- the present invention provides a nucleic acid molecule, the nucleic acid sequence of which comprises any one selected from the following:
- nucleotide 487 of SEQ ID NO:3 or its complementary sequence and at least 11 consecutive nucleotides upstream and downstream thereof e.g., 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30 or more consecutive nucleotides.
- the nucleic acid sequence comprises at least 3 (e.g., 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20 or more) consecutive nucleotides upstream of the 487th nucleotide corresponding to SEQ ID NO:3 or its complementary sequence.
- the nucleic acid sequence comprises at least 3 (e.g., 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20 or more) consecutive nucleotides downstream of the 487th nucleotide corresponding to SEQ ID NO:3 or its complementary sequence.
- the nucleic acid sequence comprises SEQ ID NO:1 or its complementary sequence.
- the nucleic acid sequence comprises SEQ ID NO:6 or its complementary sequence.
- the nucleic acid sequence comprises SEQ ID NO:3 or its complementary sequence.
- the complementarity is partial complementarity or complete complementarity.
- the presence of the nucleic acid molecule in a corn plant or its part, seed, cell or progeny is detected to determine whether the DNA of the transgenic corn event DBN9229 exists.
- a representative sample of the seeds of the transgenic corn event DBN9229 has been deposited in the China General Microbiological Culture Collection Center with the deposit number CGMCC No. 45229.
- nucleotide 397 of SEQ ID NO:4 or its complementary sequence corresponds to nucleotide 397 of SEQ ID NO:4 or its complementary sequence and at least 11 consecutive nucleotides upstream and downstream thereof (e.g., 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30 or more consecutive nucleotides).
- the nucleic acid sequence comprises at least 3 (e.g., 3, 4, 5, 6, 7, 8, 9, 10, 11 or more) consecutive nucleotides upstream of nucleotide 397 corresponding to SEQ ID NO: 4 or its complementary sequence. acid.
- the nucleic acid sequence comprises at least 3 (e.g., 3, 4, 5, 6, 7, 8, 9, 10, 11 or more) consecutive nucleotides downstream of the 397th nucleotide corresponding to SEQ ID NO:4 or its complementary sequence.
- the nucleic acid sequence comprises SEQ ID NO:2 or its complementary sequence.
- the nucleic acid sequence comprises SEQ ID NO:7 or its complementary sequence.
- the nucleic acid sequence comprises SEQ ID NO:4 or its complementary sequence.
- the complementarity is partial complementarity or complete complementarity.
- nucleic acid sequences contain SEQ ID NO: 5 or its complementary sequence.
- the SEQ ID NO: 5 or its complementary sequence is a sequence of 12446 nucleotides in length that characterizes the transgenic corn event DBN9229, and the specific genome and genetic elements contained therein are shown in Table 1.
- the presence of the transgenic corn event DBN9229 can be identified by the presence of the SEQ ID NO: 5 or its complementary sequence.
- the present application provides a corn plant or a part, seed, cell or progeny thereof, whose genome comprises the nucleic acid molecule as described above.
- representative samples of the corn seeds have been deposited in the China General Microbiological Culture Collection Center with the deposit number CGMCC No.45229.
- the present application provides a product comprising the corn plant as described above or a part, seed, cell or progeny thereof.
- the preparation comprises genomic DNA of the corn plant, or a part, seed, cell, or progeny thereof.
- the product is selected from one or more of corn ears, dehusked corn, corn silk, corn pollen, corn grits, corn flour, crushed corn, corn meal, corn oil, corn starch, corn steep liquor, corn malt, corn sugar, corn syrup, margarine produced from corn oil, unsaturated corn oil, saturated corn oil, corn flakes, popcorn, ethanol and/or liquor produced from corn, distillers dried grains (DDGS) produced from corn fermentation, animal feed from corn, cosmetics, and fillers.
- DDGS distillers dried grains
- the first, second, third and fourth nucleic acid sequences need not consist of only DNA, but may also include RNA, a mixture of DNA and RNA, or a combination of DNA, RNA or other nucleotides or their analogs that do not serve as templates for one or more polymerases.
- the probe or primer of the present invention should be at least about 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21 or 22 consecutive nucleotides in length, which can be selected from the nucleotides or fragments thereof described in SEQ ID NO: 1, SEQ ID NO: 2, SEQ ID NO: 3, SEQ ID NO: 4 and SEQ ID NO: 5.
- the probe and primer can be a length of at least about 21 to about 50 or more consecutive nucleotides or fragments thereof.
- the nucleic acid sequence or its complementary sequence can be used in a DNA amplification method to produce an amplicon, which is used to detect the presence of transgenic corn event DBN9229 or its progeny in a biological sample; the nucleic acid sequence or its complementary sequence can be used in a nucleotide detection method to detect the presence of transgenic corn event DBN9229 or its progeny in a biological sample.
- primers e.g., at least two primers
- the target amplification product comprises SEQ ID NO:1 or its complementary sequence, SEQ ID NO:2 or its complementary sequence, SEQ ID NO:6 or its complementary sequence, and/or SEQ ID NO:7 or its complementary sequence.
- step (c) the presence of the DNA or its amplified product is detected by fluorescent quantitative PCR, sequencing, or blot hybridization.
- step (a) at least one probe is provided and contacted with the sample and primers.
- the sample is a DNA sample extracted from corn.
- the primer comprises the nucleic acid sequence of a nucleic acid molecule as described above.
- the two primers include the complementary sequences of SEQ ID NO:1 and SEQ ID NO:9, SEQ ID NO:8 and SEQ ID NO:9, SEQ ID NO:2 and SEQ ID NO:11, SEQ ID NO:10 and SEQ ID NO:11, or SEQ ID NO:1 and SEQ ID NO:2.
- the present invention also provides a method for detecting DNA of genetically modified corn in a sample, the method comprising:
- the sample is a DNA sample extracted from corn.
- the DNA comprises the nucleic acid sequence of a nucleic acid molecule as described above.
- the stringent conditions may be hybridization at 65°C in a 6 ⁇ SSC (sodium citrate), 0.5% SDS (sodium dodecyl sulfate) solution, and then washing the membrane once with 2 ⁇ SSC, 0.1% SDS and once with 1 ⁇ SSC, 0.1% SDS.
- 6 ⁇ SSC sodium citrate
- SDS sodium dodecyl sulfate
- the probe comprises SEQ ID NO:1 or its complementary sequence, SEQ ID NO:2 or its complementary sequence, SEQ ID NO:6 or its complementary sequence, and/or SEQ ID NO:7 or its complementary sequence.
- At least one of said probes is labeled with at least one fluorescent group.
- the detection probe comprises a fluorescent group and a quencher group, wherein the fluorescent group is capable of emitting a signal, and the quencher group is capable of absorbing or quenching the signal emitted by the fluorescent group; and The signal emitted by the probe when hybridized to its complementary sequence is different from the signal emitted when not hybridized to its complementary sequence.
- the probe is selected from a TaqMan probe, a FRET probe, or any combination thereof.
- the present invention also provides a method for detecting DNA of genetically modified corn in a sample, the method comprising:
- the marker nucleic acid molecule includes at least one selected from the following: SEQ ID NO: 1 or its complementary sequence, SEQ ID NO: 2 or its complementary sequence, and/or SEQ ID NO: 6-11 or its complementary sequence.
- the present invention also provides a DNA detection kit, which comprises at least one DNA molecule, and the DNA molecule comprises the nucleic acid sequence of the nucleic acid molecule as described above.
- the DNA molecule can be used as one of the DNA primers or probes specific to transgenic corn event DBN9229 or its progeny.
- the DNA molecule can be used as a primer and/or probe for corn plant or its part, seed, cell or offspring as described above, or for goods as described above.
- the primer has as described above in definition.
- the probe has as described above in definition.
- the DNA molecule comprises SEQ ID NO:1 or its complementary sequence, SEQ ID NO:2 or its complementary sequence, SEQ ID NO:6 or its complementary sequence, and/or SEQ ID NO:7 or its complementary sequence.
- the methods are used to detect the presence of DNA from transgenic corn event DBN9229 in a sample.
- the present invention also provides a plant cell, comprising a nucleic acid sequence encoding an insect-resistant Cry1Fa2 protein, a nucleic acid sequence encoding a Cry2Ab2 protein, a nucleic acid sequence encoding a glufosinate herbicide-tolerant PAT protein and a nucleic acid sequence in a specific region, wherein the nucleic acid sequence in the specific region includes the sequence shown in SEQ ID NO:1, SEQ ID NO:2, SEQ ID NO:6 and/or SEQ ID NO:7.
- the plant cell comprises a nucleic acid sequence encoding an insect resistance Cry1Fa2 protein, The nucleic acid sequence of Cry2Ab2 protein, the nucleic acid sequence encoding the glufosinate herbicide-tolerant PAT protein and the nucleic acid sequence of a specific region, wherein the nucleic acid sequence of the specific region includes the sequence shown in SEQ ID NO:3 and/or SEQ ID NO:4.
- the genome of the plant cell comprises SEQ ID NO:1, SEQ ID NO:5 nucleic acid sequences at positions 685-11603 and SEQ ID NO:2, in sequence.
- the genome of the plant cell comprises the sequence shown in SEQ ID NO:5.
- the present invention also provides a method for protecting corn plants from insect attack, the method comprising providing at least one transgenic corn plant cell in the diet of the target insect, the transgenic corn plant cell comprising the sequence shown in SEQ ID NO:1 and/or SEQ ID NO:2 in its genome.
- target insects that feed on cells of the transgenic corn plant are inhibited from further feeding on the transgenic corn plant.
- the transgenic corn plant cell contains the sequence shown in SEQ ID NO:3 and/or SEQ ID NO:4 in its genome.
- the transgenic corn plant cell contains SEQ ID NO:1, SEQ ID NO:5 nucleic acid sequences at positions 685-11603 and SEQ ID NO:2 in sequence in its genome, or contains SEQ ID NO:5.
- the transgenic corn plant cell is obtained from a corn plant as described above, or a part, seed, cell, or progeny thereof, or a preparation as described above.
- the insect is a pest of the order Lepidoptera.
- the insect is selected from the group consisting of Spodoptera frugiperda, Mythimna seperata, Ostrinia furnacalis, Helicoverpa armiger, Conogethes punctiferalis, Spodoptera litura, Agrotis ypsilon Rottemberg, Ostrinia nubilalis, Helicoverpa zea, Diatraea grandiosella, or any combination thereof.
- the present invention also provides a method for protecting corn plants from damage caused by herbicides or controlling weeds in a field where corn plants are planted, the method comprising applying an effective dose of glufosinate herbicide to a field where at least one transgenic corn plant is planted, wherein the transgenic corn plant contains the sequence shown in SEQ ID NO:1 and/or SEQ ID NO:2 in its genome, and the transgenic corn plant is tolerant to glufosinate herbicide.
- the transgenic corn plant comprises a gene that confers resistance to the glufosinate herbicide (eg, phosphinothricin N-acetyltransferase cPAT).
- glufosinate herbicide eg, phosphinothricin N-acetyltransferase cPAT.
- the transgenic corn plant contains the sequence shown in SEQ ID NO:3 and/or SEQ ID NO:4 in its genome.
- the transgenic corn plant contains the nucleic acid sequences of SEQ ID NO:1, SEQ ID NO:5 positions 685-11603 and SEQ ID NO:2 in sequence in its genome, or contains the sequence shown in SEQ ID NO:5.
- the transgenic corn plant is or is obtained from a corn plant as described above, or a part, seed, cell or progeny thereof.
- the present invention also provides a method for cultivating corn plants that are resistant to insects and/or tolerant to glufosinate-ammonium herbicides, the method comprising:
- the genome of the corn seed comprises a nucleic acid sequence encoding an insect resistance Cry2Ab2 protein, a nucleic acid sequence of a Cry1Fa2 protein and/or a nucleic acid sequence encoding a glufosinate herbicide tolerance PAT protein, and a nucleic acid sequence in a specific region; or the genome of the corn seed comprises the nucleic acid sequence shown in SEQ ID NO:5;
- the nucleic acid sequence of the specific region comprises the sequence shown in SEQ ID NO: 1 and/or SEQ ID NO: 2. In certain embodiments, the nucleic acid sequence of the specific region comprises the sequence shown in SEQ ID NO: 3 and/or SEQ ID NO: 4.
- the insect is a pest of the order Lepidoptera.
- the insect is selected from the group consisting of Spodoptera frugiperda, Mythimna seperata, Ostrinia furnacalis, Helicoverpa armiger, Conogethes punctiferalis, Spodoptera litura, Agrotis ypsilon Rottemberg, Ostrinia nubilalis, Helicoverpa zea, Diatraea grandiosella, or any combination thereof.
- the corn seed is or is obtained from a corn plant, or a part, seed, cell, or progeny thereof, as described above.
- the present invention also provides a method for producing a corn plant resistant to insects and/or tolerant to glufosinate-ammonium herbicides, the method comprising: modifying a gene encoding insect resistance contained in a first corn plant genome to generate a gene encoding insect resistance;
- the nucleic acid sequence of the present invention comprises a nucleic acid sequence encoding a Cry2Ab2 protein, a nucleic acid sequence of a Cry1Fa2 protein and/or a nucleic acid sequence encoding a glufosinate-tolerant PAT protein, and a nucleic acid sequence in a specific region, wherein the nucleic acid sequence in the specific region comprises at least one nucleic acid sequence selected from the group consisting of SEQ ID NO:1, SEQ ID NO:2, SEQ ID NO:3, SEQ ID NO:4, SEQ ID NO:5, SEQ ID NO:6 and SEQ ID NO:7.
- the method includes introducing the nucleic acid sequence encoding the insect-resistant Cry1Fa2 protein, the nucleic acid sequence of the Cry2Ab2 protein and/or the nucleic acid sequence encoding the glufosinate-tolerant PAT protein, and the nucleic acid sequence of the specific region contained in the genome of the first corn plant, or the nucleic acid sequence shown in SEQ ID NO:5 contained in the genome of the first corn plant, into the second corn plant, thereby producing a large number of progeny plants; selecting the progeny plants having the nucleic acid sequence of the specific region, and the progeny plants are resistant to insects and/or tolerant to glufosinate-ammonium herbicides; the nucleic acid sequence of the specific region includes the sequence shown in SEQ ID NO:1 and/or SEQ ID NO:2. In some embodiments, the nucleic acid sequence of the specific region includes the sequence shown in SEQ ID NO:3 and/or SEQ ID NO:4.
- the method comprises sexually crossing transgenic corn event DBN9229 with another corn plant (e.g., a corn plant lacking insect resistance and/or glufosinate tolerance), thereby producing a plurality of progeny plants, and selecting the progeny plants having the nucleic acid sequence of the specific region;
- the nucleic acid sequence of the specific region comprises the sequence shown in SEQ ID NO: 1 and/or SEQ ID NO: 2.
- the nucleic acid sequence of the specific region comprises the sequence shown in SEQ ID NO: 3 and/or SEQ ID NO: 4.
- the method comprises selfing a first generation progeny plant, thereby producing a plurality of second generation progeny plants; infesting the progeny plants with a target insect and/or treating the progeny plants with glufosinate; and selecting the progeny plants for resistance to the insect and/or tolerance to the glufosinate herbicide.
- the corn plant is or is obtained from a corn plant as described above, or a part, seed, cell or progeny thereof.
- the method further comprises sexually crossing the insect-resistant and/or glufosinate-tolerant progeny plant with another corn parent and harvesting hybrid seed produced thereby.
- the insect is a pest of the order Lepidoptera.
- the insect is selected from the group consisting of Spodoptera frugiperda, Mythimna seperata, Ostrinia furnacalis, Helicoverpa armiger, Conogethes punctiferalis, Spodoptera litura, Agrotis ypsilon Rottemberg, Ostrinia nubilalis, Helicoverpa zea, Diatraea grandiosella, or any combination thereof.
- the present invention also provides an agricultural product or commodity produced from the transgenic corn event DBN9229, wherein the agricultural product or commodity is corn meal, corn flour, corn oil, corn silk, corn starch, corn gluten, corn tortillas, cosmetics or fillers.
- corn refers to maize (Zea mays) and includes all plant varieties that can be crossed with maize, including wild corn species.
- plant includes whole plants, plant cells, plant organs, plant protoplasts, plant cell tissue cultures from which plants can be regenerated, plant calli, plant clumps, and intact plant cells in plants or plant parts, such as embryos, pollen, ovules, seeds, leaves, flowers, branches, fruits, stalks, roots, root tips, anthers, etc.
- parts of transgenic plants within the scope of the present invention include, but are not limited to, plant cells, protoplasts, tissues, calli, embryos, and flowers, stems, fruits, leaves and roots, which are derived from transgenic plants or their progeny that have been previously transformed with the DNA molecules of the present invention and are therefore at least partially composed of transgenic cells.
- the term “gene” refers to a nucleic acid fragment that expresses a specific protein.
- the gene includes a regulatory sequence (5' non-coding sequence) before the coding sequence and a regulatory sequence (3' non-coding sequence) after the coding sequence.
- “Native gene” refers to a gene found in nature with its own regulatory sequence.
- “Chimeric gene” refers to any gene that is not a natural gene, which contains regulatory and coding sequences found in non-native.
- Endogenous gene refers to a natural gene, which is located in its natural position in the genome of an organism.
- Form gene is a foreign gene that is now present in the genome of an organism and did not originally exist, and also refers to a gene introduced into a recipient cell through a transgenic step.
- Foreign genes can include natural genes or chimeric genes inserted into non-natural organisms.
- Transgenic is a gene that has been introduced into the genome through a transformation procedure. The site in the plant genome where recombinant DNA has been inserted can be called an "insertion site” or a "target site.”
- flanking DNA may include exogenous (heterologous) DNA naturally present in the genome of an organism such as a plant or introduced by a transformation process, such as a fragment associated with a transformation event. Therefore, flanking DNA may include a combination of natural and exogenous DNA.
- flanking DNA is also referred to as “flanking region” or “flanking sequence”.
- flanking genomic sequence or “flanking genomic DNA” refers to a sequence of at least 3, 5, 10, 11, 15, 20, 50, 100, 200, 300, 400, 1000, 1500, 2000, 2500 or 5000 base pairs or longer, which is located directly upstream or downstream of the original exogenous inserted DNA molecule and is adjacent to the original exogenous inserted DNA molecule.
- flanking region When the flanking region is located downstream, it can also be referred to as “3'flank” or "right border flank”, etc.
- flanking region When the flanking region is located upstream, it can also be referred to as "5'flank” or "left border flank”, etc.
- Transformants also can contain a unique junction between the segments of heterologous insert DNA and genomic DNA or between two sections of genomic DNA or between two sections of heterologous DNA. "Joint” is the point where two specific DNA fragments connect. For example, the junction is present at the position where the insert DNA connects to the flanking DNA. Junction points are also present in transformed organisms, where two DNA fragments are connected together in a way modified from natural organisms. "Joint region” or “junction sequence” refers to the DNA comprising a junction point.
- the present invention provides a transgenic corn event called DBN9229 and its progeny, wherein the transgenic corn event DBN9229 is also called corn plant DBN9229, which includes plants and seeds of the transgenic corn event DBN9229 and plant cells or their regenerable parts, and the plant parts of the transgenic corn event DBN9229, including but not limited to cells, pollen, ovules, flowers, buds, roots, stems, silks, inflorescences, ears, leaves and products from the corn plant DBN9229, such as corn meal, corn flour, corn oil, corn steep liquor, corn silk, corn starch and biomass left in the corn crop field.
- the transgenic corn event DBN9229 is also called corn plant DBN9229, which includes plants and seeds of the transgenic corn event DBN9229 and plant cells or their regenerable parts, and the plant parts of the transgenic corn event DBN9229, including but not limited to cells, pollen, ovules, flowers, buds, roots, stems, silks, inflorescences, ears
- the transgenic corn event DBN9229 of the present invention comprises a DNA construct, and when it is expressed in plant cells, the transgenic corn event DBN9229 obtains resistance to insects and tolerance to glufosinate herbicides.
- the DNA construct comprises three expression cassettes in series, the first expression cassette comprises a suitable promoter and a suitable polyadenylation signal sequence for expression in plants, the promoter is operably connected to the nucleic acid sequence of Cry1Fa2 protein, and the nucleic acid sequence of Cry1Fa2 protein is mainly resistant to lepidopteran insects.
- the second expression cassette comprises a suitable promoter and a suitable polyadenylation signal sequence for expression in plants, the promoter is operably connected to the nucleic acid sequence of Cry2Ab2 protein, and the nucleic acid sequence of Cry2Ab2 protein is mainly resistant to lepidopteran insects.
- the third expression cassette comprises a suitable promoter and a suitable polyadenylation signal sequence for expression in plants, wherein the promoter is operably linked to a gene encoding phosphinothricin N-acetyltransferase (PAT), and the nucleic acid sequence of the PAT protein is tolerant to glufosinate herbicide.
- PAT phosphinothricin N-acetyltransferase
- Cry2Ab2 insecticidal protein and Cry1Fa2 insecticidal protein are two of many insecticidal proteins, which are produced by Insoluble spore-associated crystalline protein produced by Bacillus thuringiensis (Bt for short).
- Cry2Ab2 protein or Cry1Fa2 protein is ingested by insects and enters the midgut, and the protoxin is dissolved in the alkaline pH environment of the insect midgut, and the N- and C-termini of the protein are digested by alkaline proteases, converting the protoxin into active fragments, which bind to receptors on the surface of the insect midgut epithelial cell membrane and insert into the intestinal membrane, causing perforation lesions in the cell membrane, destroying the osmotic pressure changes and pH balance inside and outside the cell membrane, etc., disrupting the digestion process of the insect, and ultimately causing its death.
- the Cry2Ab2 gene and Cry1Fa2 gene can be obtained by optimizing codons or changing their nucleotide sequences in other ways to increase the stability and availability of transcripts in transformed cells.
- the sequences of the Cry2Ab2 gene and the Cry1Fa2 gene can be obtained from public databases (e.g., Genebank).
- Lepidoptera includes two types of insects: moths and butterflies. It is the order with the most agricultural and forestry pests, such as the black cutworm, cotton bollworm, Spodoptera litura, Spodoptera two-spotted camphor, and peach borer.
- the phosphinothricin N-acetyltransferase (PAT) gene can be an enzyme isolated from a strain of Streptomyces viridochromogenes, which catalyzes the conversion of L-phosphinothricin to its inactive form by acetylation to confer tolerance to glufosinate herbicides on plants.
- Phosphinothricin PTC, 2-amino-4-methylphosphonobutyric acid
- PTC 2-amino-4-methylphosphonobutyric acid
- PTC is the structural unit of the antibiotic 2-amino-4-methylphosphono-alanyl-alanine, and this tripeptide (PTT) has activity against Gram-positive and Gram-negative bacteria and against the fungus Botrytis cinerea.
- PTT phosphinothricin N-acetyltransferase
- phosphinothricin ammonium also known as glufosinate
- glufosinate refers to 2-amino-4-[hydroxy(methyl)phosphonyl]butyric acid ammonium
- treatment with "phosphinothricin ammonium herbicide” refers to treatment with any herbicide formulation containing glufosinate ammonium.
- the selection of the use rate of a certain glufosinate ammonium formulation in order to achieve an effective biological dose is no more than the skill of ordinary agronomic technicians.
- any herbicide formulation containing glufosinate ammonium to treat a field containing plant material derived from transgenic corn event DBN9229 will control the growth of weeds in the field and will not affect the growth or yield of plant material derived from transgenic corn event DBN9229.
- the DNA construct is introduced into the plant using a transformation method, including but not limited to Agrobacterium-mediated transformation, biolistic transformation, and pollen tube pathway transformation.
- the Agrobacterium-mediated transformation method is a common method for plant transformation.
- the foreign DNA to be introduced into the plant is cloned between the left and right border consensus sequences of the vector, i.e., the T-DNA region.
- the vector is transformed into Agrobacterium cells, which are then used to infect plant tissues, and the T-DNA region of the vector containing the foreign DNA is inserted into the plant genome.
- the gene gun transformation method is to bombard plant cells with vectors containing foreign DNA (particle-mediated biolistic transformation).
- the pollen tube channel transformation method utilizes the natural pollen tube channel (also known as pollen tube guiding tissue) formed after plant pollination to carry exogenous DNA into the embryo sac through the nucellus channel.
- the transformed plant tissue can be regenerated into transgenic plants, and progeny harboring the foreign DNA selected using appropriate markers.
- DNA construct is the combination that DNA molecule is connected to each other, and this combination provides one or more expression cassettes.
- DNA construct is preferably can self-replicate in bacterial cell, and contains the plasmid of different restriction endonuclease sites, and the restriction endonuclease sites contained are used to import the DNA molecule that functional gene element is provided, i.e. promoter, intron, leader sequence, encoding sequence, 3 ' terminator region and other sequences.
- the expression cassette contained in the DNA construct comprises the necessary gene element that provides the transcription of messenger RNA, and the expression cassette can be designed to express in prokaryotic cell or eukaryotic cell.Expression cassette of the present invention is designed to express in plant cell most preferably.
- a transgenic "event” is obtained by transforming a plant cell with a heterologous DNA construct, i.e., comprising at least one nucleic acid expression cassette containing a target gene, inserted into the plant genome by a transgenic method to produce a plant population, regenerate the plant population, and select specific plants with the characteristics of insertion at a specific genomic site.
- a heterologous DNA construct i.e., comprising at least one nucleic acid expression cassette containing a target gene
- event also refers to the offspring obtained by sexually crossing the original transformant and individuals of other varieties containing heterologous DNA, even after repeated backcrossing with the recurrent parent, the inserted DNA and flanking genomic DNA from the original transformant parent are present in the same chromosomal position in the hybrid offspring.
- event also refers to a DNA sequence from the original transformant, the DNA sequence comprising the inserted DNA and the flanking genomic sequence closely adjacent to the inserted DNA, the DNA sequence is expected to be transferred to the offspring, the offspring is produced by sexually crossing the parental line containing the inserted DNA (e.g., the original transformant and the offspring produced by its self-crossing) with the parental line that does not contain the inserted DNA, and the offspring receives the inserted DNA containing the target gene.
- the parental line containing the inserted DNA e.g., the original transformant and the offspring produced by its self-crossing
- the term “recombinant” refers to a form of DNA and/or protein and/or organism that is not normally found in nature and is therefore produced by human intervention. Such human intervention can produce recombinant DNA molecules and/or recombinant plants.
- the "recombinant DNA molecule” is obtained by artificially combining two otherwise isolated sequence segments, for example by chemical synthesis or by genetic engineering techniques to manipulate isolated nucleic acid segments. Techniques for nucleic acid manipulation are well known.
- transgenic includes any cell, cell line, callus, tissue, plant part or plant, the genotype of which is changed due to the presence of heterologous nucleic acid, and the “transgenic” includes the original transgenic body so changed and the progeny individuals generated by the original transgenic body through sexual hybridization or asexual reproduction.
- the term “transgenic” does not include plants obtained by conventional plant breeding methods or simply containing only natural mutations. of plants.
- heterologous means that a first molecule is not normally found in nature in combination with a second molecule.
- a molecule can be derived from a first species and inserted into the genome of a second species. Such a molecule is thus heterologous to the host and is artificially introduced into the genome of the host cell.
- the transgenic corn event DBN9229 having resistance to lepidopteran insects and tolerance to glufosinate herbicide is cultivated by the following steps: firstly, a first parent corn plant is sexually hybridized with a second parent corn plant, thereby producing a variety of first generation progeny plants, wherein the first parent corn plant is composed of corn plants cultivated from the transgenic corn event DBN9229 and its progeny, and the transgenic corn event DBN9229 and its progeny are obtained by transformation using the expression cassette of the present invention having resistance to lepidopteran insects and tolerance to glufosinate herbicide, and the second parent corn plant lacks resistance to lepidopteran insects and/or tolerance to glufosinate herbicide; then, progeny plants having resistance to attack by lepidopteran insects and/or tolerance to glufosinate herbicide are selected; or, the first generation progeny plants are self-pollinated to produce a plurality of second generation progeny plants, the progeny plants are attacked with target insects and/or treated with
- Corn plants that are resistant to lepidopteran insects and tolerant to glufosinate herbicides can be cultivated. These steps can further include backcrossing the progeny plants that are resistant to lepidopteran insects and/or tolerant to glufosinate herbicides with the second parent corn plant or the third parent corn plant, and then selecting the progeny by attacking with lepidopteran insects, applying glufosinate herbicides, or by identification of molecular markers associated with the traits (such as DNA molecules comprising the 5' end and 3' end of the insertion sequence in transgenic corn event DBN9229) to produce corn plants that are resistant to lepidopteran insects and tolerant to glufosinate herbicides.
- traits such as DNA molecules comprising the 5' end and 3' end of the insertion sequence in transgenic corn event DBN9229
- transgenic plants can also be mated to produce offspring containing two independent, segregating added exogenous genes. Selfing of appropriate offspring can result in offspring plants that are homozygous for both added exogenous genes. Backcrossing of parental plants and outcrossing with non-transgenic plants as described above are also contemplated, as are asexual reproduction.
- probe is a separate nucleic acid molecule to which a conventional detectable label or reporter molecule, such as a radioisotope, ligand, chemiluminescent agent or enzyme is bound.
- a conventional detectable label or reporter molecule such as a radioisotope, ligand, chemiluminescent agent or enzyme is bound.
- the probe is complementary to a strand of a target nucleic acid, and in the present invention, the probe is complementary to a DNA strand from the genome of transgenic corn event DBN9229, whether the genomic DNA is from transgenic corn event DBN9229 or seeds or from plants or seeds or extracts of transgenic corn event DBN9229.
- the probe of the present invention includes not only deoxyribonucleic acid or ribonucleic acid, but also polyamides and other probe materials that specifically bind to a target DNA sequence and can be used to detect the presence of the target DNA sequence.
- primer is a separate nucleic acid molecule that anneals to a complementary target DNA strand through nucleic acid hybridization, forms a hybrid between the primer and the target DNA strand, and then extends along the target DNA strand under the action of a polymerase (e.g., DNA polymerase).
- a polymerase e.g., DNA polymerase
- the primer pair of the present invention relates to its use in amplification of a target nucleic acid sequence, for example, by polymerase chain reaction (PCR) or other conventional nucleic acid amplification methods.
- probes and primers are generally 11 polynucleotides or more, for example 18 polynucleotides or more, 24 polynucleotides or more, 30 polynucleotides or more.
- Such probes and primers hybridize specifically with the target sequence under highly stringent hybridization conditions.
- probes that are different from the target DNA sequence and that maintain hybridization ability to the target DNA sequence can be designed by conventional methods, preferably, the probes and primers of the present invention have complete DNA sequence identity with the continuous nucleic acids of the target sequence.
- Primers and probes based on the flanking genomic DNA and insertion sequences of the present invention can be determined by conventional methods, for example, by isolating the corresponding DNA molecule from plant material derived from transgenic corn event DBN9229 and determining the nucleic acid sequence of the DNA molecule.
- the DNA molecule comprises the transgenic insertion sequence and the corn genomic flanking sequence, and fragments of the DNA molecule can be used as primers or probes.
- the nucleic acid probe and primer of the present invention hybridize with the target DNA sequence under stringent conditions. Any conventional nucleic acid hybridization or amplification method can be used to identify the presence of DNA derived from transgenic corn event DBN9229 in a sample. Nucleic acid molecules or fragments thereof can be specifically hybridized with other nucleic acid molecules under certain circumstances. As used in the present invention, if two nucleic acid molecules can form an antiparallel double-stranded nucleic acid structure, it can be said that the two nucleic acid molecules can specifically hybridize with each other. If two nucleic acid molecules show complete complementarity, then one of the nucleic acid molecules is said to be the "complement" of another nucleic acid molecule.
- nucleic acid molecules when each nucleotide of a nucleic acid molecule is complementary to the corresponding nucleotide of another nucleic acid molecule, then the two nucleic acid molecules are said to show "complete complementarity". If two nucleic acid molecules can hybridize with sufficient stability so that they anneal and bind to each other under at least conventional "low stringency” conditions, then the two nucleic acid molecules are said to be “minimally complementary”. Similarly, if two nucleic acid molecules can hybridize with sufficient stability so that they anneal and bind to each other under conventional "high stringency” conditions, then the two nucleic acid molecules are said to have "complementarity".
- Deviations from complete complementarity are permissible as long as such deviations do not completely prevent the two molecules from forming a double-stranded structure.
- a nucleic acid molecule In order for a nucleic acid molecule to serve as a primer or probe, it is only necessary to ensure that it has sufficient complementarity in sequence to form a stable double-stranded structure under the specific solvent and salt concentration used.
- a substantially homologous sequence is a nucleic acid molecule that can specifically hybridize with the complementary strand of another matching nucleic acid molecule under highly stringent conditions.
- Suitable stringent conditions for promoting DNA hybridization include, for example, treatment with 6.0 ⁇ sodium chloride/sodium citrate (SSC) at about 45°C and then at 50°C.
- SSC sodium chloride/sodium citrate
- the conditions are well known to those skilled in the art.
- the salt concentration in the washing step can be selected from about 2.0 ⁇ SSC, 50°C for low stringency conditions to about 0.2 ⁇ SSC, 50°C for high stringency conditions.
- the temperature conditions in the washing step can be increased from about 22°C for low stringency conditions to about 65°C for high stringency conditions.
- a nucleic acid molecule of the present invention can specifically hybridize with one or more nucleic acid molecules or their complementary sequences in SEQ ID NO:1, SEQ ID NO:2, SEQ ID NO:3, SEQ ID NO:4, SEQ ID NO:5, SEQ ID NO:6 and SEQ ID NO:7, or any fragment of the above sequences under moderate stringency conditions, such as at about 2.0 ⁇ SSC and about 65°C.
- a nucleic acid molecule of the present invention specifically hybridizes with one or more nucleic acid molecules of SEQ ID NO:1, SEQ ID NO:2, SEQ ID NO:3, SEQ ID NO:4, SEQ ID NO:5, SEQ ID NO:6 and SEQ ID NO:7 or their complementary sequences, or any fragments of the above sequences under highly stringent conditions.
- a preferred marker nucleic acid molecule has SEQ ID NO:1, SEQ ID NO:2, SEQ ID NO:6 or SEQ ID NO:7 or their complementary sequences, or any fragments of the above sequences.
- Another preferred marker nucleic acid molecule of the present invention has 80% to 100% or 90% to 100% sequence identity with SEQ ID NO:1, SEQ ID NO:2, SEQ ID NO:6 or SEQ ID NO:7 or their complementary sequences, or any fragments of the above sequences.
- SEQ ID NO:1, SEQ ID NO:2, SEQ ID NO:6 and SEQ ID NO:7 can be used as markers in plant breeding methods to identify offspring of genetic crosses.
- the hybridization of the probe to the target DNA molecule can be detected by any method known to those skilled in the art, including but not limited to fluorescent labeling, radioactive labeling, antibody labeling, and chemiluminescent labeling.
- stringent conditions refer to conditions that only allow the primers to hybridize to the target nucleic acid sequence in a DNA thermal amplification reaction, and primers having a wild-type sequence (or its complementary sequence) corresponding to the target nucleic acid sequence are able to bind to the target nucleic acid sequence and preferably produce a unique amplification product, i.e., an amplicon.
- the term “specifically binds to (a target sequence)” means that under stringent hybridization conditions, the probe or primer hybridizes only to the target sequence in a sample containing the target sequence.
- amplicon refers to the product of nucleic acid amplification of a target nucleic acid sequence that is part of a nucleic acid template.
- a corn plant was produced by sexual hybridization containing the transgenic corn event DBN9229 of the present invention, or whether a corn sample collected from a field contains transgenic corn event DBN9229, or whether a corn extract, such as meal, flour, or oil, contains transgenic corn event DBN9229
- DNA extracted from a corn plant tissue sample or extract can be subjected to a nucleic acid amplification method using a primer pair to produce an amplicon that is diagnostic for the presence of DNA of the transgenic corn event DBN9229.
- the primer pair includes a primer pair derived from a plant genome.
- the amplicon has a length and sequence that is also diagnostic for the transgenic corn event DBN9229.
- the amplicon can range in length from the combined length of the primer pair plus one nucleotide base pair, preferably plus about 50 nucleotide base pairs, more preferably plus about 250 nucleotide base pairs, and most preferably plus about 450 nucleotide base pairs or more.
- the primer pairs can be derived from flanking genomic sequences on both sides of the inserted DNA to produce an amplicon comprising the entire inserted nucleotide sequence.
- One of the primer pairs derived from the plant genomic sequence can be located at a distance from the inserted DNA sequence, the distance ranging from one nucleotide base pair to about 20,000 nucleotide base pairs.
- the use of the term "amplicon" specifically excludes primer dimers formed in a DNA thermal amplification reaction.
- Nucleic acid amplification reaction can be achieved by any nucleic acid amplification reaction method known in the art, including polymerase chain reaction (PCR).
- PCR polymerase chain reaction
- Various nucleic acid amplification methods are well known to those skilled in the art.
- PCR amplification methods have been developed to amplify up to 22kb of genomic DNA and up to 42kb of phage DNA. These methods and other DNA amplification methods in the art can be used in the present invention.
- the inserted exogenous DNA sequence and the flanking DNA sequence from the transgenic corn event DBN9229 can be amplified by utilizing the provided primer sequences to amplify the genome of the transgenic corn event DBN9229, and after amplification, the PCR amplicon or cloned DNA is subjected to standard DNA sequencing.
- a DNA detection kit based on a DNA amplification method contains DNA molecules used as primers, which specifically hybridize to the target DNA under appropriate reaction conditions and amplify diagnostic amplicons.
- the kit can provide an agarose gel-based detection method or many methods for detecting diagnostic amplicons known in the prior art.
- a kit containing DNA primers homologous or complementary to any part of the corn genome of SEQ ID NO:3 or SEQ ID NO:4, and homologous or complementary to any part of the transgenic insertion region of SEQ ID NO:5 is provided by the present invention.
- the primer pair particularly identified as useful in the DNA amplification method is SEQ ID NO:8 and SEQ ID NO:9, which amplify a diagnostic amplicon homologous to a portion of the 5' transgenic/genomic region of the transgenic corn event DBN9229, wherein the amplicon includes SEQ ID NO:1.
- Other DNA molecules used as DNA primers can be selected from SEQ ID NO:5.
- the amplicons generated by these methods can be detected by a variety of techniques.
- One such method is Genetic Bit Analysis, in which a DNA oligonucleotide strand is designed that spans the insert DNA sequence and the adjacent flanking genomic DNA sequence.
- the oligonucleotide strand is immobilized in a microwell of a microplate, and after PCR amplification of the target region (using one primer each in the insert sequence and the adjacent flanking genomic sequence), the single-stranded PCR product can be hybridized to the immobilized oligonucleotide strand and used as a template for a single base extension reaction using a DNA polymerase and ddNTPs specifically labeled for the next expected base.
- Results are obtained using an ELISA-type method. Signals represent the presence of the insert/flanking sequence, indicating that amplification, hybridization, and single base extension reactions were successful.
- Another method is pyrosequencing.
- This method designs an oligonucleotide chain that spans the inserted DNA sequence and the adjacent genomic DNA binding site.
- the oligonucleotide chain is hybridized with the single-stranded PCR product of the target region (one primer is used in the inserted sequence and one primer is used in the adjacent flanking genomic sequence), and then incubated with DNA polymerase, ATP, sulfhydryl enzyme, luciferase, apyrase, adenosine-5'-phosphosulfate and luciferin.
- dNTPs are added separately and the generated light signals are measured.
- the light signal represents the presence of the inserted/flanking sequence, which indicates that the amplification, hybridization, and single-base or multi-base extension reaction are successful.
- the fluorescence polarization phenomenon described by Chen et al. is also a method that can be used to detect the amplicon of the present invention.
- Using this method requires designing an oligonucleotide chain that spans the inserted DNA sequence and the adjacent genomic DNA binding site.
- the oligonucleotide chain is hybridized with the single-stranded PCR product of the target region (one primer is used in the inserted sequence and one primer is used in the adjacent flanking genomic sequence), and then incubated with a DNA polymerase and a fluorescently labeled ddNTP.
- Single-base extension will result in the insertion of the ddNTP.
- This insertion can be measured by a change in its polarization using a fluorimeter.
- the change in polarization represents the presence of the inserted/flanking sequence, which indicates that the amplification, hybridization and single-base extension reactions are successful.
- Taqman is described as a method for detecting and quantifying the presence of a DNA sequence and is described in detail in the instructions provided by the manufacturer.
- a FRET oligonucleotide probe is designed that spans the insert DNA sequence and the adjacent genomic flanking binding site.
- the FRET probe and PCR primers are cycled in the presence of a thermostable polymerase and dNTPs.
- Hybridization of the FRET probe results in the cleavage of the fluorescent and quenching moieties on the FRET probe and the release of the fluorescent moiety.
- the generation of a fluorescent signal represents the presence of the insert/flanking sequence, which indicates that amplification and hybridization were successful.
- suitable techniques for detecting plant materials derived from transgenic corn event DBN9229 may also include Southern blot hybridization, Northern blot hybridization, and in situ hybridization.
- the suitable techniques include incubating the probe and sample, washing to remove unbound probes, and detecting whether the probe has hybridized.
- the detection method depends on the type of label attached to the probe, for example, radiolabeled probes can be detected by X-ray exposure and development, or enzyme-labeled probes can be detected by color change through substrate conversion.
- Tyangi et al. (Nature Biotech. 14:303-308, 1996) introduced the application of molecular markers in sequence detection.
- a brief description is as follows: a FRET oligonucleotide probe is designed that spans the inserted DNA sequence and the adjacent genomic flanking binding site.
- the unique structure of the FRET probe results in it containing a secondary structure.
- the secondary structure can keep the fluorescent part and the quenching part in close proximity.
- the FRET probe and PCR primers (one primer each in the insert sequence and the adjacent flanking genomic sequence) are cyclically reacted in the presence of a thermostable polymerase and dNTPs.
- hybridization of the FRET probe and the target sequence results in the loss of the probe secondary structure, thereby separating the fluorescent part and the quenching part in space and generating a fluorescent signal.
- the generation of the fluorescent signal represents the presence of the insert/flanking sequence, which indicates that the amplification and hybridization are successful.
- Optical dyes are used to detect and measure specific DNA molecules.
- Nanotube devices containing electronic sensors for detecting DNA molecules or nanobeads that bind specific DNA molecules and can thus be detected are useful for detecting DNA molecules of the present invention.
- a DNA detection kit can be developed using the compositions of the present invention and methods described or known in the art of DNA detection.
- the kit is useful for identifying the presence of DNA of transgenic corn event DBN9229 in a sample, and can also be used to grow corn plants containing DNA of transgenic corn event DBN9229.
- the kit can contain DNA primers or probes that are homologous to or complementary to at least a portion of SEQ ID NO: 1, 2, 3, 4, or 5, or other DNA primers or probes that are homologous to or complementary to DNA contained in a transgenic genetic element of the DNA, and these DNA sequences can be used in DNA amplification reactions, or as probes in DNA hybridization methods.
- the DNA structure of the transgenic insertion sequence and the junction site of the corn genome contained in the corn genome and illustrated in Figure 1 and Table 1 comprises: the flanking genomic region of the corn plant DBN9229 located at the 5' end of the transgenic insertion sequence; a portion of the insertion sequence from the left border region (LB) of Agrobacterium;
- the first expression cassette is composed of a cauliflower mosaic virus 35S promoter (pr35S), operably linked to the glufosinate-tolerant phosphinothricin N-acetyltransferase (cPAT) of Streptomyces, and operably linked to the cauliflower mosaic virus 35S terminator (t35S);
- the second expression cassette is composed of an actin 1 (Actin) promoter from rice, operably linked to the maize Rubisco gene chloroplast transit peptide gene (spZmCTP2), and operably linked to the cauliflower mosaic virus 35S terminator (t35S).
- the first expression cassette is composed of a Cry2Ab2 protein (cCry2Ab2) of insect resistance of Bacillus thuringiensis, and is operably connected to the In2-1 gene transcription terminator (tIn2);
- the third expression cassette is composed of a maize ubiquitin gene 1 promoter (prZmUbi1), operably connected to the Cry1Fa2 protein (cCry1Fa2) of insect resistance of Bacillus thuringiensis, operably connected to the transcription terminator (tORF25PolyA) of mannopine synthase from the pTiA6 plasmid of Agrobacterium tumefaciens A6 strain, and operably connected to the nuclear skeleton binding sequence (eRB7); a part of the insertion sequence from the right border region (RB) of Agrobacterium, and the flanking genomic region of the maize plant DBN9229 located at the 3' end of the transgenic insertion sequence (SEQ ID NO: 5).
- the DNA molecule used as a primer can be any part of the transgenic insertion sequence derived from the transgenic maize event DBN9229, or it can be derived from the transgenic maize event DBN9229. Any portion of the DNA sequence flanking the maize genome.
- Transgenic corn event DBN9229 can be combined with other transgenic corn varieties, such as transgenic corn varieties with tolerance to herbicides (such as glyphosate, dicamba, etc.), or transgenic corn varieties carrying other insect-resistant genes.
- Various combinations of all these different transgenic events bred together with the transgenic corn event DBN9229 of the present invention, can provide improved hybrid transgenic corn varieties that are resistant to multiple insect pests and multiple herbicides. These varieties can show more excellent characteristics such as yield improvement compared to non-transgenic varieties and single-trait transgenic varieties.
- the transgenic corn event DBN9229 of the present invention is resistant to feeding damage by lepidopteran pests and tolerates the phytotoxic effects of agricultural herbicides containing glufosinate.
- the corn plant DBN9229 expresses Cry2Ab2 protein and Cry1Fa2 protein from Bacillus thuringiensis, which provide resistance to feeding damage by lepidopteran pests (such as small cutworms and oriental armyworms), and expresses glufosinate-resistant phosphinothricin N-acetyltransferase (PAT) protein from Streptomyces, which confers tolerance to glufosinate.
- PAT phosphinothricin N-acetyltransferase
- the corn plant DBN9229 has the following advantages: 1) free from economic losses caused by lepidopteran pests (such as small cutworms, oriental armyworms, cotton bollworms, fall armyworms, etc.), which are major pests in corn-growing areas; 2) the ability to apply agricultural herbicides containing glufosinate to corn crops for broad-spectrum weed control; 3) corn yield is not reduced.
- the transgenes encoding insect resistance and glufosinate tolerance traits are linked to the same DNA segment and are present on a single locus in the genome of transgenic corn event DBN9229, which provides enhanced breeding efficiency and enables the use of molecular markers to track transgenic inserts in breeding populations and their progeny.
- SEQ ID NO: 1 or its complementary sequence, SEQ ID NO: 2 or its complementary sequence, SEQ ID NO: 3 or its complementary sequence, SEQ ID NO: 4 or its complementary sequence, SEQ ID NO: 6 or its complementary sequence, or SEQ ID NO: 7 or its complementary sequence in the detection method of the present invention can be used as a DNA primer or probe to produce an amplification product diagnosed as transgenic corn event DBN9229 or its progeny, and can quickly, accurately and stably identify the presence of plant materials derived from transgenic corn event DBN9229.
- the present application transforms corn plant cells with exogenous DNA (i.e., a nucleic acid construct containing a target gene) and inserts it into a specific position of the corn genome.
- exogenous DNA i.e., a nucleic acid construct containing a target gene
- the corn plants or parts, seeds, cells or progeny of the transgenic corn event DBN9229 produced can stably and highly express proteins with insect resistance and proteins with resistance to glufosinate herbicides, and the corresponding traits can also be stably inherited.
- nucleic acid molecules provided in the present application and the corn plants or parts, seeds, cells or progeny thereof have good insect resistance (particularly, the insect mortality rate in the insect resistance test reached 100%, significantly reducing the damage level of the corn plants) and glufosinate herbicide tolerance (particularly, the application of glufosinate The damage of corn plants during the vegetative period after phosphine herbicide treatment is almost zero).
- hybridizing corn plants or their parts, seeds, cells or progeny with other resistant corn plants can further reduce the proportion of insect-resistant refuges required in actual production and increase plant yield.
- nucleic acid molecules of the present application and the corn plants or parts, seeds, cells or progeny thereof comprising the same have great application potential in corn planting and breeding.
- Fig. 1 is a schematic diagram of the structure of the transgenic insertion sequence and the junction of the corn genome for detecting the nucleic acid sequence of corn plant DBN9229 and the detection method thereof of the present invention, as well as a schematic diagram of the relative position of the nucleic acid sequence for detecting corn plant DBN9229 (refer to B73 RefGen v4 for the relative position schematic diagram).
- LB (bNLB), multiple elements contained in the third expression cassette inserted (t35S, cPAT and pr35S), multiple elements contained in the second expression cassette inserted (prOsAct1, spZmCTP2, cCry2Ab2 and tIn2), multiple elements contained in the first expression cassette inserted (prZmUbi1, cCry1Fa2, tORF25PolyA and RB7), RB (bNRB), and 3' corn genome.
- FIG. 2 is a schematic diagram of the structure of the recombinant expression vector DBN11815 for detecting the nucleic acid sequence of corn plant DBN9229 and the detection method thereof according to the present invention.
- FIG. 3 is an in vitro effect diagram of the transgenic corn event DBN9229 inoculated with fall armyworm, oriental armyworm and Asian corn borer for detecting the nucleic acid sequence of the corn plant DBN9229 and the detection method thereof of the present invention.
- FIG. 4 is a field effect diagram of the transgenic corn event DBN9229 inoculated with Asian corn borer for detecting the nucleic acid sequence of the corn plant DBN9229 and the detection method thereof of the present invention.
- FIG. 5 is a field effect diagram of the transgenic corn event DBN9229 under the natural occurrence conditions of fall armyworm for detecting the nucleic acid sequence of corn plant DBN9229 and the detection method thereof of the present invention.
- Seeds of the genetically modified maize event DBN9229 have been purchased from the Budapest Treaty at Beichen West Road, Chaoyang District, Beijing. The deposit is held at the China General Microbiological Culture Collection Center (CGMCC) at No. 3, Courtyard 1, with the deposit number CGMCC No. 45229 and the deposit date is July 29, 2022. The deposit will be kept at the deposit for 30 years.
- CGMCC China General Microbiological Culture Collection Center
- the recombinant expression vector DBN11815 (as shown in Figure 2) was constructed using standard gene cloning technology.
- the vector DBN11815 contains three transgenic expression cassettes in series.
- the first expression cassette is composed of the maize polyubiquitin gene 1 promoter (prZmUbi1), which is operably linked to the insect-resistant Cry1Fa2 protein (cCry1Fa2) from Bacillus thuringiensis, which is operably linked to the transcription terminator (tORF25PolyA) of the mannopine synthase of the pTiA6 plasmid of Agrobacterium tumefaciens A6 strain, and which is operably linked to the nuclear skeleton binding sequence (eRB7);
- the second expression cassette is composed of the rice actin 1 promoter (prOsAct1), which is operably linked to the maize
- the Rubisco gene chloroplast localization signal peptide (spZmCTP2) is operably linked to the
- the vector DBN11815 was transformed into Agrobacterium LBA4404 (Invitrgen, Chicago, USA; Cat. No: 18313-015) using the liquid nitrogen method, and the transformed cells were screened using glufosinate-ammonium as a selection marker.
- immature embryos are separated from maize and contacted with an Agrobacterium suspension, wherein the Agrobacterium is capable of transferring the T-DNA (containing the nucleotide sequence of the Cry1Fa2 gene, the nucleotide sequence of the Cry2Ab2 gene and the nucleotide sequence of the pat gene) in the DBN11815 vector to at least one cell of one of the embryos (step 1: infection step).
- the Agrobacterium is capable of transferring the T-DNA (containing the nucleotide sequence of the Cry1Fa2 gene, the nucleotide sequence of the Cry2Ab2 gene and the nucleotide sequence of the pat gene) in the DBN11815 vector to at least one cell of one of the embryos (step 1: infection step).
- the young embryos are co-cultivated with Agrobacterium for a period of time (3 days) (step 2: co-cultivation step).
- the young embryos are cultured on solid medium (MS salts 4.3 g/L, MS vitamins, casein 300 mg/L, sucrose 20 g/L, glucose 10 g/L, AS 100 mg/L, 2,4-D 1 mg/L, agar 8 g/L, pH 5.8) after the infection step.
- solid medium MS salts 4.3 g/L, MS vitamins, casein 300 mg/L, sucrose 20 g/L, glucose 10 g/L, AS 100 mg/L, 2,4-D 1 mg/L, agar 8 g/L, pH 5.8
- At least one antibiotic known to inhibit the growth of Agrobacterium (cephalosporin 150-250 mg/L) is present in the recovery medium (MS salts 4.3 g/L, MS vitamins, casein 300 mg/L, sucrose 30 g/L, 2,4-D 1 mg/L, cephalosporin 250 mg/L, phytagel 3 g/L, pH 5.8), and no selection agent for plant transformants is added (step 3: recovery step).
- the young embryos are cultured on a solid medium with antibiotics but no selection agent to eliminate Agrobacterium and provide a recovery period for infected cells.
- the inoculated young embryos are cultured on a medium containing a selection agent (glufosinate-ammonium) and growing transformed callus is selected (step 4: selection step).
- a selection agent glufosinate-ammonium
- the immature embryos are cultured on a screening solid medium with a selection agent (MS salts 4.3 g/L, MS vitamins, casein 300 mg/L, sucrose 30 g/L, cephalosporin 250 mg/L, glufosinate 10 mg/L, 2,4-D 1 mg/L, plant gel 3 g/L, pH 5.8), resulting in selective growth of transformed cells.
- callus tissue is regenerated into plants (step 5: regeneration step), preferably, callus tissue grown on a medium containing a selection agent is cultured on a solid medium (MS differentiation medium and MS rooting medium) to regenerate plants.
- the resistant callus obtained by screening was transferred to the MS differentiation medium (MS salt 4.3g/L, MS vitamin, casein 300mg/L, sucrose 30g/L, 6-benzyladenine 2mg/L, cephalosporin 250mg/L, 4-[hydroxy(methyl)phosphonyl]-DL-homoalanine 5mg/L, plant gel 3g/L, pH 5.8), and cultured for differentiation at 25°C.
- MS differentiation medium MS salt 4.3g/L, MS vitamin, casein 300mg/L, sucrose 30g/L, 6-benzyladenine 2mg/L, cephalosporin 250mg/L, 4-[hydroxy(methyl)phosphonyl]-DL-homoalanine 5mg/L, plant gel 3g/L, pH 5.8
- the differentiated seedlings were transferred to the MS rooting medium (MS salt 2.15g/L, MS vitamin, casein 300mg/L, sucrose 30g/L, cephalosporin 250mg/L, indole-3-acetic acid 1mg/L, plant gel 3g/L, pH 5.8), cultured at 25°C to a height of about 10cm, and moved to a greenhouse for culture until fruiting. In the greenhouse, culture was carried out at a temperature of 28°C for 16h every day and then at a temperature of 20°C for 8h.
- MS rooting medium MS salt 2.15g/L, MS vitamin, casein 300mg/L, sucrose 30g/L, cephalosporin 250mg/L, indole-3-acetic acid 1mg/L, plant gel 3g/L, pH 5.8
- transgenic T0 plants Since genetic transformation, gene insertion, etc. may affect the agronomic traits of corn plants (such as yellowing, death, leaf curling or poor fruiting, etc.), the above 235 independent transgenic T0 plants were sent to the greenhouse for transplanting and cultivation to identify the agronomic traits of the transgenic T0 plants at different stages (seedling stage-jointing stage, jointing stage-pollen shedding stage and filling stage-maturity stage). A total of 176 transgenic T0 plants with normal agronomic traits were obtained.
- the 176 transgenic maize plants were tested for the presence of single copies of Cry1Fa2, Cry2Ab2 and pat genes, and no vector backbone sequence, a total of 97 transgenic T0 plants were obtained; through transgenic insertion site analysis, a total of 20 transgenic T0 plants with complete T-DNA flanking sequences, T-DNA not inserted into important genes in the maize genome, and gene insertion without generating new open reading frames (ORFs) were screened; through evaluation and comparison of resistance to major target insects (such as black cutworms, oriental armyworms, and cotton bollworms), a total of 15 transgenic T0 plants with good insect resistance were screened; through evaluation and comparison of tolerance to glufosinate herbicides, a total of 15 transgenic T0 plants with good tolerance to glufosinate herbicides were screened.
- major target insects such as black cutworms, oriental armyworms, and cotton bollworms
- transgenic corn event DBN9229 was selected as excellent, having a single copy transgene (see Example 2), good insect resistance, glufosinate herbicide tolerance and agronomic trait performance (see Examples 6 and 7).
- transgenic corn event DBN9229 About 100 mg of leaves of transgenic corn event DBN9229 were taken as samples, and the genomic DNA was extracted using a plant DNA extraction kit (DNeasy Plant Maxi Kit, Qiagen). The copy numbers of Cry1Fa2 gene, Cry2Ab2 gene and pat gene were detected by Taqman probe fluorescence quantitative PCR method. At the same time, wild-type corn plants were used as controls and the above method was used for detection and analysis. The experiment was repeated 3 times and the average value was taken.
- Step 1 Take 100 mg of leaves (after pollination) of transgenic corn event DBN9229, grind them into a homogenate using liquid nitrogen in a mortar, and take 3 replicates for each sample;
- Step 2 Use a plant DNA extraction kit (DNeasy Plant Maxi Kit, Qiagen) to extract genomic DNA from the above samples.
- DNeasy Plant Maxi Kit Qiagen
- Step 3 Determine the genomic DNA concentration of the above samples using an ultra-micro spectrophotometer (NanoDrop 2000, Thermo Scientific);
- Step 4 adjusting the genomic DNA concentration of the above samples to the same concentration value, wherein the concentration value ranges from 80-100 ng/ ⁇ L;
- Step 5 Use Taqman probe fluorescence quantitative PCR method to identify the copy number of the sample, use the sample with known copy number as the standard, and use the sample of wild-type corn plant as the control, and repeat 3 times for each sample to take the average value; the sequences of fluorescence quantitative PCR primers and probes are:
- Primer 1 ttgtctgagtttgttccaggtgtg as shown in SEQ ID NO: 16 in the sequence listing;
- Primer 2 ccaatcagatggagtgatgaagc as shown in SEQ ID NO: 17 in the sequence listing;
- Probe 1 tgcgtttggcctcttcgacctcatc as shown in SEQ ID NO: 18 in the sequence listing;
- Primer 3 gctcctgctgccactctttg as shown in SEQ ID NO: 19 in the sequence listing;
- Primer 4 gaggatcacgtcacgaatgaag as shown in SEQ ID NO: 20 in the sequence listing;
- Probe 2 tcaggctgccaacctgcacctct as shown in SEQ ID NO: 21 in the sequence listing;
- Primer 6 tctcaactgtccaatcgtaagcg as shown in SEQ ID NO: 23 in the sequence listing;
- Probe 3 cttacgctgggccctggaaggctag as shown in SEQ ID NO: 24 in the sequence listing;
- the PCR reaction system is:
- the 50 ⁇ primer/probe mixture contained 45 ⁇ L of each primer at 1 mM concentration, 50 ⁇ L of probe at 100 ⁇ M concentration, and 860 ⁇ L 1 ⁇ TE buffer (10 mM Tris-HCl, 1 mM EDTA, pH 8.0), and was stored in an amber test tube at 4°C.
- the PCR reaction conditions were:
- the data were analyzed using fast real-time fluorescence quantitative PCR system software (Applied Biosystems 7900HT Fast Real-Time PCR System SDS v2.3, Applied Biosystems), and the results showed that the transgenic corn event DBN9229 obtained was a single copy.
- DNA extraction was performed according to the conventional CTAB (cetyltrimethylammonium bromide) method: 2 g of young leaves of transgenic corn event DBN9229 were ground into powder in liquid nitrogen, and then 0.5 mL of DNA extraction CTAB buffer (20 g/L CTAB, 1.4 M NaCl, 100 mM Tris-HCl, 20 mM EDTA (ethylenediaminetetraacetic acid), pH adjusted to 8.0 with NaOH) preheated at 65°C was added, mixed thoroughly, and then extracted at 65°C for 90 min; 0.5 times the volume of phenol and 0.
- CTAB cetyltrimethylammonium bromide
- the concentration of the extracted DNA samples was measured to make the concentration of the sample to be tested between 80-100 ng/ ⁇ L.
- the genomic DNA was digested with restriction endonucleases Eco RI (5' end analysis) and Nco I (3' end analysis). 26.5 ⁇ L of genomic DNA, 0.5 ⁇ L of the above restriction endonucleases and 3 ⁇ L of digestion buffer (the restriction enzymes used were all enzymes from NEB and their matching buffers or universal buffers, now called NEBCutSmart) were added to each digestion system and digested for 1 hour.
- NEB T4 DNA Ligase Reaction Buffer the specific formula can be visited NEB website or refer to https://www.neb.com/products/restriction-endonucleases, https://www.neb.com/products/b0202-t4-dna-ligase-reaction-buffer) and 0.5 ⁇ L of T 4 -DNA ligase to connect overnight at 4°C.
- the primer combination for separating the 5' end genomic DNA includes SEQ ID NO: 13 and SEQ ID NO: 30 as the first primer, SEQ ID NO: 31 and SEQ ID NO: 32 as the second primer, and SEQ ID NO: 13 as the sequencing primer.
- the primer combination for separating the 3' end genomic DNA includes SEQ ID NO: 15 and SEQ ID NO: 33 as the first primer, SEQ ID NO: 34 and SEQ ID NO: 35 as the second primer, and SEQ ID NO: 15 as the sequencing primer.
- the PCR reaction conditions are shown in Table 3.
- the amplified products obtained by the above PCR amplification reaction were electrophoresed on a 2.0% agarose gel to separate the PCR amplified products, and then the target fragments were separated from the agarose matrix using a gel recovery kit (QIAquick Gel Extraction Kit, catalog #_28704, Qiagen Inc., Valencia, CA).
- the purified PCR amplified products were then sequenced (e.g., using ABIPrismTM 377, PE Biosystems, Foster City, CA) and analyzed (e.g., using DNASTAR sequence analysis software, DNASTAR Inc., Madison, WI).
- Standard PCR methods were used to confirm the 5' and 3' flanking sequences and the junction sequence.
- the 5' flanking sequence and the junction sequence can be confirmed using SEQ ID NO: 8 or SEQ ID NO: 12, in combination with SEQ ID NO: 9, SEQ ID NO: 13, or SEQ ID NO: 30.
- the 3' flanking sequence and the junction sequence can be confirmed using SEQ ID NO: 10 or SEQ ID NO: 14, in combination with SEQ ID NO: 11, SEQ ID NO: 15, or SEQ ID NO: 33.
- the PCR reaction system and amplification conditions are shown in Tables 2 and 3. Those skilled in the art will appreciate that other primer sequences can also be used to confirm the flanking sequence and the junction sequence.
- DNA sequencing of the PCR amplification products provides DNA that can be used to design other DNA molecules that can be used as primers and probes to identify corn plants or seeds derived from transgenic corn event DBN9229.
- nucleotides 1-487 of SEQ ID NO:5 showed the left border flank of the insertion sequence of the transgenic corn event DBN9229 of the maize genomic sequence (5' flanking sequence), and the nucleotides 11987-12446 of SEQ ID NO:5 showed the right border flank of the insertion sequence of the transgenic corn event DBN9229 of the maize genomic sequence (3' flanking sequence).
- the 5' junction sequence is listed in SEQ ID NO:1, and the 3' junction sequence is listed in SEQ ID NO:2.
- the junction sequence is a relatively short polynucleotide molecule that is a novel DNA sequence that is diagnostic for the DNA of transgenic corn event DBN9229 when detected in a polynucleotide detection assay.
- the junction sequences in SEQ ID NO:1 and SEQ ID NO:2 are 11 polynucleotides on each side of the insertion site of the transgenic fragment in transgenic corn event DBN9229 and the corn genomic DNA.
- Longer or shorter polynucleotide junction sequences can be selected from SEQ ID NO:3 or SEQ ID NO:4.
- the junction sequences (5' junction region SEQ ID NO:1, and 3' junction region SEQ ID NO:2) are useful as DNA probes or as DNA primer molecules in DNA detection methods.
- the junction sequences SEQ ID NO:6 and SEQ ID NO:7 are also novel DNA sequences in transgenic corn event DBN9229, which can also be used as DNA probes or as DNA primer molecules to detect the presence of transgenic corn event DBN9229 DNA.
- the SEQ ID NO:6 (nucleotides 488-1105 of SEQ ID NO:3) spans the DBN11815 construct DNA sequence, the t35S transcription termination sequence and the pat gene sequence
- the SEQ ID NO:7 (nucleotides 1-397 of SEQ ID NO:4) spans the RB7 gene expression regulatory sequence and the DBN11815 construct DNA sequence.
- an amplicon is produced by using at least one primer from SEQ ID NO:3 or SEQ ID NO:4, which, when used in a PCR method, produces a diagnostic amplicon of transgenic corn event DBN9229.
- a PCR amplification product is generated from the 5' end of the transgenic insertion sequence
- the PCR amplification product is a PCR product containing the 5' end of the T-DNA insertion sequence flanking the genome of the plant material derived from the transgenic corn event DBN9229.
- This PCR amplification product contains SEQ ID NO: 3.
- primer 7 SEQ ID NO: 8
- primer 8 SEQ ID NO: 9 was paired with the pat gene sequence located in the T-DNA insertion sequence.
- a PCR amplification product was generated from the 3' end of the transgenic insertion sequence, which PCR amplification product contained a portion of the genomic DNA flanking the 3' end of the T-DNA insertion sequence in the genome of the plant material from the transgenic corn event DBN9229.
- This PCR amplification product contained SEQ ID NO: 4.
- primer 9 SEQ ID NO: 10
- primer 10 SEQ ID NO: 11
- the DNA amplification conditions described in Tables 2 and 3 can be used in the above-mentioned PCR zygosity test to generate diagnostic amplicons for transgenic corn event DBN9229. Detection of the amplicons can be performed by using a Stratagene Robocycler, MJ Engine, Perkin-Elmer 9700 or Eppendorf Mastercycler Gradient thermal cycler, etc., or by methods and equipment known to those skilled in the art.
- thermocycler Mix gently and add 1-2 drops of mineral oil over each reaction if the thermocycler does not have a cap.
- the MJ Engine or Eppendorf Mastercycler Gradient thermocycler should be run in calculated mode.
- the Perkin-Elmer 9700 thermocycler should be run with the ramp speed set to maximum.
- primers 7 and 8 when used in the PCR reaction of the genomic DNA of the transgenic corn event DBN9229, produced an amplification product of a 1105bp fragment, and when used in the PCR reaction of the untransformed corn genomic DNA and the non-DBN9229 corn genomic DNA, no fragment was amplified
- primers 9 and 10 when used in the PCR reaction of the genomic DNA of the transgenic corn event DBN9229, produced an amplification product of a 860bp fragment, and when used in the PCR reaction of the untransformed corn genomic DNA and the non-DBN9229 corn genomic DNA, no fragment was amplified.
- the PCR zygosity assay can also be used to identify whether material derived from transgenic corn event DBN9229 is homozygous or heterozygous.
- Primer 11 (SEQ ID NO: 12), Primer 12 (SEQ ID NO: 13) and Primer 13 (SEQ ID NO: 14) are used in an amplification reaction to produce a diagnostic amplicon for transgenic corn event DBN9229.
- the DNA amplification conditions described in Tables 4 and 5 can be used in the above zygosity assay to produce a diagnostic amplicon for transgenic corn event DBN9229.
- PCR reactions were performed on a Stratagene Robocycler (Stratagene, La Jolla, CA), MJ Engine (MJ R-Biorad, Hercules, CA), Perkin-Elmer 9700 (Perkin Elmer, Boston, MA), or Eppendorf Mastercycler Gradient (Eppendorf, Hamburg, Germany) thermocycler using the cycling parameters in Table 5.
- the MJ Engine or Eppendorf Mastercycler Gradient thermocycler should be run in calculated mode.
- the Perkin-Elmer 9700 thermocycler should be run with the ramp speed set to maximum.
- the biological sample containing template DNA contains DNA diagnostic for the presence of transgenic corn event DBN9229 in the sample.
- the amplification reaction will produce two different DNA amplicons from a biological sample containing DNA derived from a corn genome that is heterozygous for the allele corresponding to the inserted DNA present in transgenic corn event DBN9229.
- the two different amplicons will correspond to a first amplicon derived from a wild-type corn genomic locus (SEQ ID NO: 12 and SEQ ID NO: 14) and a second amplicon diagnostic for the presence of transgenic corn event DBN9229 DNA (SEQ ID NO: 12 and SEQ ID NO: 13).
- a corn DNA sample that produces only a single amplicon corresponding to the second amplicon described for a heterozygous genome can be diagnostic for the presence of transgenic corn event DBN9229 in the sample, and the sample is produced from corn seeds that are homozygous for the allele corresponding to the inserted DNA present in transgenic corn plant DBN9229.
- primer pairs of transgenic corn event DBN9229 were used to generate an amplicon that is diagnostic for the genomic DNA of transgenic corn event DBN9229.
- These primer pairs include, but are not limited to, primers 7 and 8 (SEQ
- the invention relates to a method for amplifying a transgenic corn plant using a primer set comprising primers 14 and 15 (SEQ ID NOs: 25 and 26) for amplifying a corn endogenous gene.
- the method comprises a DNA amplification reaction of ...
- the DNA amplification conditions described in Tables 2-5 can be used to generate diagnostic amplicons for transgenic corn event DBN9229 using appropriate primer pairs.
- Extracts of corn plant or seed DNA that are presumed to contain transgenic corn event DBN9229, or products derived from transgenic corn event DBN9229, that produce amplicons that are diagnostic for transgenic corn event DBN9229 when tested in a DNA amplification method can be used as templates for amplification to determine the presence or absence of transgenic corn event DBN9229.
- CTAB lysis buffer 100 mM Tris-HCl pH 8.0, 20 mM EDTA pH 8.0, 1.4 M NaCl, 0.2% v/v ⁇ -mercaptoethanol, 2% w/v CTAB
- the DNA was incubated with 40 ⁇ L of 10 mg/mL RNase A at 37°C for 30 minutes, centrifuged at 4000 rpm for 5 minutes, and centrifuged at 12000 rpm for 10 minutes in the presence of 0.1 volume of 3 M sodium acetate (pH 5.2) and 2 volumes of anhydrous ethanol. After discarding the supernatant, the precipitate was washed with 1 mL of 70% (v/v) ethanol, dried at room temperature, and the DNA was redissolved in 1 mL TE buffer.
- the genomic DNA concentration of the above samples was measured using an ultra-micro spectrophotometer (NanoDrop 2000, Thermo Scientific).
- Genomic DNA was digested with restriction endonucleases Nco I, Nhe I, Mfe I, and Spe I, respectively, using partial sequences of Cry1Fa2 gene, Cry2Ab2 gene, and pat gene on T-DNA as probes. For each enzyme, the digest was incubated overnight at the appropriate temperature. The sample was spun down to 20 ⁇ L using a speed Vacuum (Thermo Scientific).
- the gel was treated with 0.25M HCl for 10 min to depurinate the DNA, and then the gel was treated with denaturing solution (1.5M NaCl, 0.5M NaOH) and neutralizing solution (1.5M NaCl, 0.5M Tris-HCl, pH 7.2) for 30 min each.
- 5 ⁇ SSC (3M NaCl, 0.3M sodium citrate, pH 7.0) was poured into a porcelain dish, a glass plate was placed, and then a soaked filter paper bridge, gel, positively charged nylon membrane (Roche, Cat. No. 11417240001), three filter papers, paper tower, and weights were placed in sequence. After transferring the membrane overnight at room temperature, the nylon membrane was rinsed twice in deionized water, and the DNA was fixed on the membrane by UV crosslinker (UVP, UV Crosslinker CL-1000).
- UV crosslinker UV crosslinker
- the DNA probe is SEQ ID NO: 27, SEQ ID NO: 28 or SEQ ID NO: 29, or is partially homologous or complementary to the above sequence.
- Use DNA Labeling and Detection Starter Kit II (Roche, Cat. No. 11585614910) to perform DIG labeling, Southern blot hybridization, membrane washing and other operations of the probe. For specific methods, refer to its product manual.
- Use X-ray film (Roche, Cat. No. 11666916001) to detect the position where the probe binds.
- the hybridization data provided conclusive evidence supporting the TaqMan TM PCR analysis that the corn plant DBN9229 contained a single copy of the Cry1Fa2 gene, the Cry2Ab2 gene, and the pat gene.
- Nco I and Nhe I digestions produced single bands of approximately 8.0 kb and 8.5 kb, respectively;
- Mfe I and Spe I digestions produced single bands of approximately 16 kb and 6.0 kb, respectively;
- using the pat gene probe Nco I
- the digestion with Nhe I and Nhe I respectively produced single bands of about 5.2 kb and 5.0 kb, indicating that one copy of each of Cry1Fa2 gene, Cry2Ab2 gene and pat gene existed in the corn plant DBN9229.
- no hybridization bands were obtained for the backbone probe, indicating that no DBN11815 vector backbone sequence entered the genome of the corn plant DBN9229 during the transformation process.
- the above 10 different expression vectors were respectively transferred into corn, and the same experimental methods were used for bioassay, protein content detection and insect resistance stability evaluation to screen the optimal vector DBN11815 for product development.
- the experimental results of the DBN11815 vector are as follows:
- the DBN11815 vector-transgenic maize plants and wild-type maize plants were subjected to bioassays against cutworms (Agrotis ypsilon Rottemberg, BCW) and oriental armyworms (Mythimna seperata, OAW) according to the following methods:
- total resistance score 100 ⁇ mortality rate + [100 ⁇ mortality rate + 90 ⁇ (number of newly hatched insects/number of insects inoculated) + 60 ⁇ (number of newly hatched negative control insects/number of insects inoculated) + 10 ⁇ (number of negative control insects/number of insects inoculated)] + 100 ⁇ (1-leaf damage rate).
- the number of insects inoculated refers to the number of insects inoculated, that is, 10 per dish (depending on the feeding amount of the pests); the larval development progress has been reflected in the total resistance score formula; the leaf damage rate refers to the proportion of the leaf area eaten by the pests to the total leaf area.
- Three transformation events of the DBN11815 vector were selected, and each transformation event Five plants with the same growth vigour were selected from each of the two plants and the wild-type corn plant (non-transgenic, NGM) for testing, and each plant was repeated 3 times. The results are shown in Table 6.
- the DBN11815 transgenic corn carrier plants and wild-type corn plants were tested for the expression levels of Cry2Ab2 and Cry1Fa2 proteins in different expression vectors by ELISA according to the following method:
- extraction buffer 8 g/L NaCl, 0.27 g/L KH 2 PO 4 , 1.42 g/L Na 2 HPO 4 , 0.2 g/L KCl, 5.5 ml/L Tween-20, pH 7.4
- the specific method is referred to the product manual.
- wild-type corn plant leaves non-transgenic, NGM
- Three transformation events were selected for the DBN11815 vector, and four plants were selected for each transformation event. Four technical replicates were performed for each plant. The results are shown in Table 7.
- Table 7 Average results of determination of insect-resistant gene protein levels ( ⁇ g/g DWT) in tissues collected from DBN11815 transgenic corn vectors
- the T2 generation plants (including homozygous and heterozygous plants) of the transgenic corn vector DBN11815 and wild-type corn plants (non-transgenic, NGM) were subjected to bioassays against Agrotis ypsilon Rottemberg (BCW).
- the experimental design and experimental methods were consistent with those in Example 5.1 above.
- the leaves of wild-type corn plants (non-transgenic, NGM) were used as controls.
- Three transformation events were selected for the DBN11815 vector, and five plants were selected for each transformation event. Each plant was repeated three times. The results are shown in Table 8.
- the transgenic corn vector DBN11815 transformation events 1 to 3
- wild-type corn plants non-transgenic, NGM
- OAW second-instar Oriental armyworm
- the wild-type corn plant leaves (non-transgenic, NGM) were used as controls, and three transformation events were selected for the transgenic corn vector DBN11815. For each transformation event, 18 plants with consistent growth were selected for testing, where every 6 plants were distributed as a whole to a 24-well plate, and the leaves of each plant were evenly distributed to 4 wells. One 24-well plate was counted as one replicate, and a total of 3 replicates were set to calculate the mortality rate. The results are shown in Table 9.
- Example 5.3 show that compared with non-transgenic control plants and the other nine expression vectors containing Cry1Fa2, Cry2Ab2 and pat genes, the three transformation events tested by the transgenic corn vector DBN11815 had good resistance to black cutworms and second-instar oriental armyworms in heterozygous and homozygous plants at the transgenic sites, and the insect resistance performance of different transformation events was stable.
- DBN11815 performed best in terms of insect resistance bioassay, insect resistance protein expression, and insect resistance stability among different generations.
- the transformation event DBN9229 with excellent performance was selected for product development.
- the transgenic corn event DBN9229 from the preferred transgenic corn vector DBN11815 and the wild-type corn plant (non-transgenic, NGM) were subjected to bioassays against Spodoptera frugiperda (FAW), Mythimna seperata (OAW), Ostrinia furnacalis (ACB), Helicoverpa armigera (CBW), Conogethes punctiferalis (YPM), Spodoptera litura (TCW) and Agrotis ypsilon Rottemberg (BCW), respectively.
- the experimental design and experimental methods were consistent with those in Example 5.1 above.
- the results are shown in Table 10.
- the transgenic corn event DBN9229 was compared with other transgenic corn plants screened in Example 1.
- the experimental design and experimental methods were consistent with those in Example 5.1 above.
- the results are shown in Table 11 and Table 12.
- the leaf tissue of the transgenic corn event DBN9229 receptor background had good resistance to fall armyworm, oriental armyworm, Asian corn borer, cotton bollworm, peach borer, Spodoptera litura and black cutworm, and the test insect mortality rate and total resistance score of the transgenic corn event DBN9229 were significantly higher than those of NGM, among which the mortality rate of insects that ate the transgenic corn event DBN9229 almost all reached 100%.
- the insect resistance mortality rate and total resistance score of the transgenic corn event DBN9229 were significantly higher than those of other transgenic corn plants screened in Example 1.
- the transgenic corn event DBN9229 was introduced into two genetically different corn inbred lines, MLA05 and MLB07, by backcrossing, and the generation was BC4F3.
- the insect resistance performance of corn event DBN9229 was evaluated under the new genetic background.
- the transgenic corn event DBN9229 and wild-type corn plants were bioassayed against fall armyworm (Spodoptera frugiperda, FAW), oriental armyworm (Mythimna seperata, OAW) and Asian corn borer (Ostrinia furnacalis, ACB), respectively.
- the experimental design and experimental methods were consistent with the above-mentioned Example 5.1. The results are shown in Table 13.
- the transgenic maize event DBN9229 was crossed with the conventional non-transgenic maize inbred line MLT05 to obtain the transgenic maize hybrid MZ003.
- the insect resistance performance of the maize event DBN9229 was evaluated in the hybrid background.
- Hybrid MZ003 containing corn event DBN9229 and conventional corn hybrid MZ003 were subjected to bioassays against fall armyworm (Spodoptera frugiperda, FAW) and oriental armyworm (Mythimna seperata, OAW), respectively, and the experimental design and experimental methods were consistent with the above-mentioned Example 5.1. The results are shown in Table 14.
- hybrid MZ003 containing corn event DBN9229 and conventional corn hybrid MZ003 (non-transgenic, NGM) were planted in a randomized block design with 3 replicates.
- Conventional cultivation management was used and no pesticides were sprayed during the entire growth period. There was a 2m interval between different insect test plots to prevent the spread of insects between different plots.
- the transgenic corn event DBN9229 showed a high level of resistance to cotton bollworm, while the control corn plants were more susceptible to insect infestation.
- the damage level of the transgenic corn event DBN9229 to cotton bollworm was significantly lower than that of non-transgenic corn (NGM), at least 3 levels lower.
- the test method is consistent with the above evaluation of cotton bollworm resistance.
- the difference is that the average value of the damage level of resistance to the female ear of the corn ear of each plot is calculated based on the damage to the female ear, the number of boreholes, the length of the borehole tunnel (cm), the age and number of surviving larvae, and the judgment criteria are shown in Table 18.
- the resistance level to the Asian corn borer at the corn ear stage is judged according to the standards in Table 19.
- the resistance results of the transgenic corn event DBN9229 to the Asian corn borer at the silking stage are shown in Table 20.
- the transgenic corn event DBN9229 showed a high level of resistance to the Asian corn borer, while the control corn plants were more susceptible to the insect.
- the damage level of the transgenic corn event DBN9229 to the Asian corn borer was significantly lower than that of non-transgenic corn (NGM), at least 3 levels lower.
- the test method is different from that for cotton bollworm and Asian corn borer mentioned above.
- Fall armyworm is evaluated under natural field conditions. Field insect resistance tests were conducted on the transgenic corn event DBN9229 under natural conditions in areas where fall armyworm is more serious.
- Leaf tissue was evaluated around the trumpet stage. 10-15 days after the occurrence of insect infestation, and when NGM was mostly 5-6-year-old larvae, the damage of fall armyworm to corn leaves was investigated plant by plant, and the average value of the damage level of fall armyworm to corn leaves in each replicate was calculated. The judgment criteria are shown in Table 21, and then the resistance level of corn leaves to fall armyworm in the trumpet stage was judged according to the standards in Table 22. The resistance results of transgenic corn event DBN9229 to fall armyworm in the trumpet stage are shown in Table 23.
- transgenic corn event DBN9229 had a good resistance level to fall armyworm, while the control corn plants were seriously damaged.
- the damage level of leaf tissue of transgenic corn event DBN9229 to fall armyworm was significantly lower than that of non-transgenic corn (NGM).
- the transgenic corn event DBN9229 was genetically integrated with DBN9936 (CN104830847B) and DBN9501 (CN109868273B) and introduced into the same corn plant. Specifically, the transgenic corn event DBN9936 was first hybridized with the transgenic corn event DBN9501 to obtain a heterozygous plant of the stacked transgenic corn event DBN9501 ⁇ DBN9936, and then after two generations of self-pollination, the number of target gene copies was detected by TaqMan (refer to the second embodiment) and the pure heterozygosity of the PCR zygosity detection site was detected (refer to the third embodiment), and the stacked transgenic corn event DBN9501 ⁇ DBN9936 homozygous plant was obtained, which was used as the male parent to hybridize with the transgenic corn event DBN9229 (female parent) to obtain the stacked transgenic corn event DBN9229 ⁇ DBN9501 ⁇ DBN9936.
- transgenic maize event DBN9229 ⁇ DBN9501 ⁇ DBN9936 and the wild-type maize plant were subjected to bioassay against fall armyworm (Spodoptera frugiperda, FAW), and the experimental design and experimental method were consistent with the evaluation of Example 5.1 above. The results are shown in Table 24.
- the genetically stacked transgenic corn DBN9229 ⁇ DBN9501 ⁇ DBN9936 has multiple insect resistance mechanisms against Asian corn borer. It can further reduce the proportion of insect-resistant shelters required in actual production, better protect production benefits and delay Resistance occurs.
- the transgenic maize events DBN9229 ⁇ DBN9501 ⁇ DBN9936 (multiple insect resistance mechanisms, 5% shelter mixed planting) and DBN9936 (single insect resistance mechanism, 20% shelter drill planting) were evaluated in areas where the natural occurrence of Asian corn borer is more serious.
- the experimental design was to plant 20 rows per treatment, with a row length of 9m, a row spacing of 60cm, and a plant spacing of 28cm, and conventional cultivation management.
- the moldy ear ratios of different products are shown in Table 26.
- the T3, T4 and T5 generations of the transgenic corn event DBN9229 were evaluated by spraying glufosinate ammonium.
- the test used Basta herbicide (18% glufosinate ammonium salt solution as active ingredient) for spraying.
- the recommended concentration of Basta for field weed control is 400g ai/ha.
- DBN9229 was treated with the following two herbicides: (1) Basta herbicide was sprayed at a dosage of 800g ai/ha (ai/ha means "active ingredient per hectare") at the V3 stage; (2) no herbicide was sprayed, and at the same time as the herbicide was sprayed in treatment (1), an equal volume of clean water was sprayed.
- Each treatment was set up with 3 replicates, and each replicate had 2 rows (row length 9m, row spacing 60cm, plant spacing
- NVM Non-genetically modified corn
- the phytotoxicity symptoms were investigated 2 weeks after the application of the drug, and the phytotoxicity symptom classification is shown in Table 27.
- the transgenic maize event DBN9229 was subjected to the following two treatments: (1) glufosinate treatment: maize DBN9229 plants were sprayed with the herbicide Glufosinate at a dosage of 800 g ai/ha (ai/ha means "active ingredient per hectare") at the V3 stage; (2) control treatment: (with an active ingredient of 30% benzathine) + atrazine herbicide mixed treatment; the specific operation is to use 25g ai/ha and atrazine at a dose of 945 g ai/ha Tianjin herbicide was mixed and sprayed on corn DBN9229 plants at V3 stage.
- the corn yield of each plot is the total corn grain yield (weight) of each plot.
- the yield percentage results are shown in Table 29.
- Agricultural products or commodities such as can be produced from transgenic corn event DBN9229. If sufficient expression is detected in the agricultural product or commodity, the agricultural product or commodity is expected to contain a nucleotide sequence that can diagnose the presence of transgenic corn event DBN9229 material in the agricultural product or commodity.
- the agricultural product or commodity includes, but is not limited to, corn oil, corn meal, cornmeal, corn gluten, corn tortillas, corn starch, and any other food to be consumed by animals as a food source, or otherwise used as a bulking agent or ingredient in a cosmetic composition for cosmetic purposes.
- Nucleic acid detection methods and/or kits based on probe or primer pairs can be developed to detect nucleotide sequences derived from transgenic corn event DBN9229 such as shown in SEQ ID NO:1 or SEQ ID NO:2 in biological samples, wherein the probe sequence or primer sequence is selected from the sequences shown in SEQ ID NO:1, SEQ ID NO:2, SEQ ID NO:3, SEQ ID NO:4 and SEQ ID NO:5, or portions thereof, to diagnose the presence of transgenic corn event DBN9229.
- the transgenic corn event DBN9229 of the present invention has good resistance to lepidopteran insects and high tolerance to glufosinate herbicides without affecting yield.
- the detection method can accurately and quickly identify whether the biological sample contains the DNA molecules of the transgenic corn event DBN9229.
- CGMCC General Microbiology Center of China Microorganism Culture Collection
Landscapes
- Life Sciences & Earth Sciences (AREA)
- Health & Medical Sciences (AREA)
- Genetics & Genomics (AREA)
- Engineering & Computer Science (AREA)
- Chemical & Material Sciences (AREA)
- Biotechnology (AREA)
- Organic Chemistry (AREA)
- Zoology (AREA)
- Wood Science & Technology (AREA)
- Biomedical Technology (AREA)
- Bioinformatics & Cheminformatics (AREA)
- Molecular Biology (AREA)
- General Engineering & Computer Science (AREA)
- Physics & Mathematics (AREA)
- General Health & Medical Sciences (AREA)
- Biophysics (AREA)
- Biochemistry (AREA)
- Microbiology (AREA)
- Cell Biology (AREA)
- Plant Pathology (AREA)
- Proteomics, Peptides & Aminoacids (AREA)
- Analytical Chemistry (AREA)
- Botany (AREA)
- Spectroscopy & Molecular Physics (AREA)
- Environmental Sciences (AREA)
- Insects & Arthropods (AREA)
- Pest Control & Pesticides (AREA)
- Developmental Biology & Embryology (AREA)
- Mycology (AREA)
- Immunology (AREA)
- Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
- Breeding Of Plants And Reproduction By Means Of Culturing (AREA)
Abstract
The present invention relates to a nucleic acid sequence for detecting corn plant DBN9229 and a detection method therefor, wherein the nucleic acid sequence comprises SEQ ID NO: 1 or a complementary sequence thereof, or SEQ ID NO: 2 or a complementary sequence thereof. The corn plant DBN9229 has better resistance to Lepidopteran and better tolerance to glufosinate herbicides and has no influence on the yield, and the detection method can accurately and quickly identify whether a DNA molecule of the transgenic corn event DBN9229 is contained in a biological sample.
Description
相关申请的交叉引用CROSS-REFERENCE TO RELATED APPLICATIONS
本申请是以CN申请号为202310235118.1,申请日为2023年03月13日的申请为基础,并主张其优先权,该CN所有申请的内容在此作为整体引入本申请中。This application is based on the application with CN application number 202310235118.1 and application date March 13, 2023, and claims its priority. The contents of all CN applications are hereby introduced as a whole into this application.
本发明涉及植物分子生物学领域,特别是农业生物技术研究中的转基因农作物育种领域。具体地,本发明涉及昆虫抗性和草铵膦除草剂耐受性的转基因玉米事件DBN9229和用于检测生物样品中是否包含特定转基因玉米事件DBN9229的核酸序列及其检测方法。The present invention relates to the field of plant molecular biology, in particular to the field of transgenic crop breeding in agricultural biotechnology research. Specifically, the present invention relates to a transgenic corn event DBN9229 with insect resistance and glufosinate herbicide tolerance, and a nucleic acid sequence and a detection method thereof for detecting whether a biological sample contains a specific transgenic corn event DBN9229.
玉米(Zea mays L.)在世界上很多地区都是主要的粮食作物。生物技术已经应用于玉米以改善其农艺性状和品质。在玉米生产中昆虫抗性是一项重要的农艺性状,特别是对鳞翅目昆虫的抗性,例如玉米螟、棉铃虫、东方黏虫、小地老虎、草地贪夜蛾等。玉米对鳞翅目昆虫的抗性可以通过转基因的方法使鳞翅目昆虫的抗性基因在玉米植物中表达而获得。另一个重要的农艺性状是除草剂耐受性,如已有成功的玉米转化事件NK603、GA21等,美国等玉米主要种植区域已广泛种植。值得一提的是,草铵膦除草剂与草甘膦除草剂的作用机理不同,其为灭生性的触杀型除草剂,且可以作为一种有效管理草甘膦抗性杂草的手段。玉米对草铵膦除草剂的耐受性可以通过转基因的方法使草铵膦除草剂耐受型基因(如pat)在玉米植物中表达而获得。Maize (Zea mays L.) is a staple food crop in many parts of the world. Biotechnology has been applied to maize to improve its agronomic traits and quality. Insect resistance is an important agronomic trait in maize production, especially resistance to Lepidoptera insects, such as corn borer, cotton bollworm, oriental armyworm, cutworm, fall armyworm, etc. Maize resistance to Lepidoptera insects can be obtained by transgenic methods to express Lepidoptera insect resistance genes in maize plants. Another important agronomic trait is herbicide tolerance, such as the successful maize transformation events NK603 and GA21, which have been widely planted in major maize growing areas such as the United States. It is worth mentioning that glufosinate herbicide has a different mechanism of action from glyphosate herbicide. It is a contact herbicide that kills and can be used as an effective means of managing glyphosate-resistant weeds. Maize tolerance to glufosinate herbicide can be obtained by transgenic methods to express glufosinate herbicide tolerance genes (such as pat) in maize plants.
已知外源基因在植物体内的表达受到它们的染色体位置的影响,可能是由于染色质结构(如异染色质)或转录调节元件(如增强子)接近整合位点。为此,通常需要筛选大量的事件才有可能鉴定出可以商业化的事件(即导入的目标基因得到最优表达的事件)。例如,在植物和其他生物体中已经观察到导入基因的表达量在事件间可能有很大差异;在表达的空间或时间模式上可能也存在差异,如在不同植物组织之间转基因的相对表达存在差异,这种差异表现在实际的表达模式可能与根据导入的基因构建体中的转录调节元件所预期的表达模式不一致。因此,通常需要产生成百上千个不同的事件并从这些事件中筛选出具有以商业化为目的所预期的转基因表达量和表达模式的单一事件。
具有预期的转基因表达量和表达模式的事件可用于采用常规育种方法通过有性异型杂交将转基因渗入到其他遗传背景中。通过这种杂交方式产生的后代保持了原始转化体的转基因表达特征。应用这种策略模式可以确保在许多品种中具有可靠的基因表达,而这些品种能很好的适应当地的生长条件。It is known that the expression of foreign genes in plants is affected by their chromosomal location, which may be due to chromatin structure (such as heterochromatin) or the proximity of transcriptional regulatory elements (such as enhancers) to the integration site. For this reason, it is usually necessary to screen a large number of events before it is possible to identify events that can be commercialized (i.e., events in which the introduced target gene is optimally expressed). For example, it has been observed in plants and other organisms that the expression level of the introduced gene can vary greatly between events; there may also be differences in the spatial or temporal pattern of expression, such as differences in the relative expression of the transgene between different plant tissues, which is manifested in the fact that the actual expression pattern may be inconsistent with the expression pattern expected based on the transcriptional regulatory elements in the introduced gene construct. Therefore, it is usually necessary to generate hundreds or thousands of different events and screen them for a single event with the expected transgene expression level and expression pattern for commercialization purposes. Events with the expected transgene expression level and expression pattern can be used to introgress the transgene into other genetic backgrounds through sexual outcrossing using conventional breeding methods. Progeny generated by such crosses retain the transgene expression characteristics of the original transformant. Applying this strategy can ensure reliable gene expression in many varieties that are well adapted to local growing conditions.
能够检测特定事件的存在以确定有性杂交的后代是否包含目的基因将是有益的。此外,检测特定事件的方法还将有助于遵守相关法规,例如来源于重组农作物的食物在投入市场前需要获得正式批准和进行标记。通过任何熟知的多核苷酸检测方法来检测转基因的存在都是可能的,例如聚合酶链式反应(PCR)或利用多核苷酸探针的DNA杂交。这些检测方法通常集中于常用的遗传元件,例如启动子、终止子、标记基因等。因此,除非与插入的转基因DNA相邻的染色体DNA(“侧翼DNA”)的序列是己知的,上述这种方法就不能够用于区别不同的事件,特别是那些用相同的DNA构建体产生的事件。所以,目前常利用跨越了插入的转基因和侧翼DNA的接合部位的一对引物通过PCR来鉴定转基因特定事件,具体地说是包含于插入序列的第一引物和包含于插入序列的第二引物。It will be useful to be able to detect the presence of a specific event to determine whether the offspring of a sexual hybridization contains the target gene. In addition, the method for detecting a specific event will also help to comply with relevant regulations, such as the need to obtain formal approval and labeling of food derived from recombinant crops before being put on the market. It is possible to detect the presence of a transgenic by any well-known polynucleotide detection method, such as polymerase chain reaction (PCR) or DNA hybridization utilizing polynucleotide probes. These detection methods usually focus on commonly used genetic elements, such as promoters, terminators, marker genes, etc. Therefore, unless the sequence of the chromosomal DNA ("flanking DNA") adjacent to the inserted transgenic DNA is known, this method above can not be used to distinguish different events, particularly those events produced with the same DNA construct. Therefore, a pair of primers that often utilize the junction site of the inserted transgenic and flanking DNA to identify a transgenic specific event by PCR, specifically a first primer included in the inserted sequence and a second primer included in the inserted sequence.
发明内容Summary of the invention
本申请将外源DNA片段转化入玉米,并获得了基因组特定插入位置的转基因玉米事件DBN9229,其对昆虫具有较好的抗性并对草铵膦除草剂具有较好的耐受性。由此,本申请提供了用于检测玉米植物DBN9229的核酸序列及其检测方法,且检测方法可以准确快速的鉴定生物样品中是否包含转基因玉米事件DBN9229的DNA分子。The present application transforms exogenous DNA fragments into corn and obtains a transgenic corn event DBN9229 with a specific insertion position in the genome, which has good resistance to insects and good tolerance to glufosinate herbicides. Thus, the present application provides a nucleic acid sequence for detecting corn plant DBN9229 and a detection method thereof, and the detection method can accurately and quickly identify whether a biological sample contains a DNA molecule of the transgenic corn event DBN9229.
核酸分子Nucleic acid molecules
为实现上述目的,在第一方面,本发明提供了一种核酸分子或其组合,其核酸序列包含:To achieve the above object, in the first aspect, the present invention provides a nucleic acid molecule or a combination thereof, wherein the nucleic acid sequence thereof comprises:
SEQ ID NO:3或其互补序列第1-487位中至少11个连续的核苷酸、和/或SEQ ID NO:3或其互补序列第488-1105位中至少11个连续的核苷酸;At least 11 consecutive nucleotides from positions 1 to 487 of SEQ ID NO: 3 or its complementary sequence, and/or at least 11 consecutive nucleotides from positions 488 to 1105 of SEQ ID NO: 3 or its complementary sequence;
SEQ ID NO:4或其互补序列第1-397位中至少11个连续的核苷酸、和/或SEQ ID NO:4或其互补序列第398-860位中至少11个连续的核苷酸;和/或At least 11 consecutive nucleotides from positions 1 to 397 of SEQ ID NO: 4 or its complementary sequence, and/or at least 11 consecutive nucleotides from positions 398 to 860 of SEQ ID NO: 4 or its complementary sequence; and/or
SEQ ID NO:3或其互补序列第1-487位中至少11个连续的核苷酸、和/或SEQ ID NO:4或其互补序列第398-860位中至少11个连续的核苷酸。At least 11 consecutive nucleotides from positions 1 to 487 of SEQ ID NO:3 or its complementary sequence, and/or at least 11 consecutive nucleotides from positions 398 to 860 of SEQ ID NO:4 or its complementary sequence.
在某些实施方案中,所述连续的核苷酸为11、12、13、14、15、16、17、18、19、
20、21、22、23、24、25、26、27、28、29、30个或更多个连续的核苷酸。In certain embodiments, the consecutive nucleotides are 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30 or more consecutive nucleotides.
在某些实施方案中,所述互补序列与其母本序列是部分互补或完全互补。In certain embodiments, the complementary sequence is partially complementary or fully complementary to its parent sequence.
在某些实施方案中,所述核酸序列包含SEQ ID NO:3或其互补序列第1-487位中22-25个连续的核苷酸、和SEQ ID NO:3或其互补序列第488-1105位中22-25个连续的核苷酸;和/或SEQ ID NO:4或其互补序列第1-397位中22-25个连续的核苷酸、和SEQ ID NO:4或其互补序列第398-860位中22-25个连续的核苷酸。In certain embodiments, the nucleic acid sequence comprises 22-25 consecutive nucleotides from positions 1-487 of SEQ ID NO:3 or its complementary sequence, and 22-25 consecutive nucleotides from positions 488-1105 of SEQ ID NO:3 or its complementary sequence; and/or 22-25 consecutive nucleotides from positions 1-397 of SEQ ID NO:4 or its complementary sequence, and 22-25 consecutive nucleotides from positions 398-860 of SEQ ID NO:4 or its complementary sequence.
在某些实施方案中,所述核酸序列包含SEQ ID NO:1或其互补序列;和/或SEQ ID NO:2或其互补序列。In some embodiments, the nucleic acid sequence comprises SEQ ID NO:1 or its complementary sequence; and/or SEQ ID NO:2 or its complementary sequence.
将目的核酸片段插入玉米基因组后,会在目的核酸片段的5’端与3’端分别与玉米基因组产生两个接合点。在本文中:After the target nucleic acid fragment is inserted into the corn genome, two junction points will be generated at the 5' end and 3' end of the target nucleic acid fragment and the corn genome respectively. In this article:
SEQ ID NO:3为DBN11815构建体插入玉米基因组中所产生的包含5’端接合点的核酸片段。其中,SEQ ID NO:3的第1-487位核苷酸为位于5’端接合点上游的玉米基因组的序列,SEQ ID NO:3的第488-1105位核苷酸为DBN11815构建体的DNA序列。SEQ ID NO:3 is a nucleic acid fragment containing the 5' junction point generated by inserting the DBN11815 construct into the corn genome. Among them, nucleotides 1-487 of SEQ ID NO:3 are the sequence of the corn genome located upstream of the 5' junction point, and nucleotides 488-1105 of SEQ ID NO:3 are the DNA sequence of the DBN11815 construct.
SEQ ID NO:1为DBN11815构建体插入玉米基因组中所产生的包含5’端接合点的核酸片段。其中,SEQ ID NO:1的第1-11位核苷酸为位于5’端接合点上游的玉米基因组的序列,SEQ ID NO:1的第12-22位核苷酸为DBN11815构建体的DNA序列。SEQ ID NO:1 is a nucleic acid fragment containing the 5' junction point generated by inserting the DBN11815 construct into the corn genome. Among them, nucleotides 1-11 of SEQ ID NO:1 are the sequence of the corn genome located upstream of the 5' junction point, and nucleotides 12-22 of SEQ ID NO:1 are the DNA sequence of the DBN11815 construct.
SEQ ID NO:4为DBN11815构建体插入玉米基因组中所产生的包含3’端接合点的核酸片段。其中,SEQ ID NO:4的第1-397位核苷酸为DBN11815构建体的DNA序列,SEQ ID NO:4的第398-860位核苷酸为位于3’端接合点下游的玉米基因组的序列。SEQ ID NO:4 is a nucleic acid fragment containing a 3' junction point generated by inserting the DBN11815 construct into the corn genome. Among them, nucleotides 1-397 of SEQ ID NO:4 are the DNA sequence of the DBN11815 construct, and nucleotides 398-860 of SEQ ID NO:4 are the sequence of the corn genome located downstream of the 3' junction point.
SEQ ID NO:2为DBN11815构建体插入玉米基因组中所产生的包含3’端接合点的核酸片段。其中,SEQ ID NO:2的第1-11位核苷酸为DBN11815构建体的DNA序列,SEQ ID NO:2的第12-22位核苷酸为位于3’端接合点下游的玉米基因组的序列。SEQ ID NO:2 is a nucleic acid fragment containing the 3' junction point generated by the DBN11815 construct inserted into the corn genome. Among them, the nucleotides 1-11 of SEQ ID NO:2 are the DNA sequence of the DBN11815 construct, and the nucleotides 12-22 of SEQ ID NO:2 are the sequence of the corn genome located downstream of the 3' junction point.
当所述核酸分子包含一条序列,所述序列可以是检测转基因事件DBN9229是否存在的DNA模板、引物或探针。When the nucleic acid molecule comprises a sequence, the sequence can be a DNA template, primer or probe for detecting the presence of transgenic event DBN9229.
当所述核酸分子的组合包含2条或更多条序列,所述序列可以是检测转基因事件DBN9229是否存在的引物对。When the combination of nucleic acid molecules comprises two or more sequences, the sequences can be a primer pair for detecting the presence of transgenic event DBN9229.
所述SEQ ID NO:1或其互补序列为转基因玉米事件DBN9229中在插入序列的5’末端位于插入接合部位附近的一个长度为22个核苷酸的序列,所述SEQ ID NO:1或其互补序列跨越了玉米插入位点的侧翼基因组DNA序列和插入序列的5’末端的DNA序列,包含所述SEQ ID NO:1或其互补序列即可鉴定为转基因玉米事件DBN9229的存在。所述SEQ ID NO:2或其互补序列为转基因玉米事件DBN9229中在插入序列的3’末端位于插入接合部位附近的一个长度为22个核苷酸的序列,所述SEQ ID NO:2或其互补序列跨越了插入序列的3’末端的DNA序列和玉米插入位点的侧翼基因组DNA序列,包含所
述SEQ ID NO:2或其互补序列即可鉴定为转基因玉米事件DBN9229的存在。The SEQ ID NO:1 or its complementary sequence is a 22-nucleotide sequence located near the insertion junction at the 5' end of the insertion sequence in the transgenic corn event DBN9229. The SEQ ID NO:1 or its complementary sequence spans the flanking genomic DNA sequence of the corn insertion site and the DNA sequence at the 5' end of the insertion sequence. The presence of the transgenic corn event DBN9229 can be identified by including the SEQ ID NO:1 or its complementary sequence. The SEQ ID NO:2 or its complementary sequence is a 22-nucleotide sequence located near the insertion junction at the 3' end of the insertion sequence in the transgenic corn event DBN9229. The SEQ ID NO:2 or its complementary sequence spans the DNA sequence at the 3' end of the insertion sequence and the flanking genomic DNA sequence of the corn insertion site. The SEQ ID NO:2 or its complementary sequence spans the DNA sequence at the 3' end of the insertion sequence and the flanking genomic DNA sequence of the corn insertion site. The presence of SEQ ID NO: 2 or its complementary sequence can be identified as the presence of transgenic corn event DBN9229.
在某些实施方案中,所述核酸序列包含SEQ ID NO:3或其互补序列、和/或SEQ ID NO:4或其互补序列。In certain embodiments, the nucleic acid sequence comprises SEQ ID NO:3 or its complementary sequence, and/or SEQ ID NO:4 or its complementary sequence.
本发明中,所述核酸序列可以为所述SEQ ID NO:3或其互补序列中T-DNA插入序列的任何部分的至少11个或更多个连续多核苷酸(第一核酸序列),或者为所述SEQ ID NO:3或其互补序列中5’侧翼玉米基因组DNA区域的任何部分的至少11个或更多个连续多核苷酸(第二核酸序列)。所述核酸序列进一步可以为同源于或互补于包含完整的所述SEQ ID NO:1的所述SEQ ID NO:3的一部分。当第一核酸序列和第二核酸序列一起使用时,这些核酸序列可作为DNA引物对用于产生扩增产物的DNA扩增方法中。使用DNA引物对在DNA扩增方法中产生的扩增产物是包括SEQ ID NO:1的扩增产物时,可以诊断转基因玉米事件DBN9229或其后代的存在。所述SEQ ID NO:3或其互补序列为转基因玉米事件DBN9229中在T-DNA插入序列的5’末端位于插入接合部位附近的一个长度为1105个核苷酸的序列,所述SEQ ID NO:3或其互补序列由487个核苷酸的玉米基因组5’侧翼序列(SEQ ID NO:3的核苷酸第1-487位)、197个核苷酸的DBN11815构建体DNA序列(SEQ ID NO:3的核苷酸第488-684位)、195个核苷酸的t35S花椰菜花叶病毒转录终止子的DNA序列(SEQ ID NO:3的核苷酸第685-879位)和226个核苷酸的编码草铵膦除草剂耐受剂PAT蛋白的核苷酸序列(SEQ ID NO:3的核苷酸第880-1105位)组成,包含所述SEQ ID NO:3或其互补序列即可鉴定为转基因玉米事件DBN9229的存在。In the present invention, the nucleic acid sequence may be at least 11 or more continuous polynucleotides (first nucleic acid sequence) of any part of the T-DNA insertion sequence in the SEQ ID NO:3 or its complementary sequence, or at least 11 or more continuous polynucleotides (second nucleic acid sequence) of any part of the 5' flanking corn genomic DNA region in the SEQ ID NO:3 or its complementary sequence. The nucleic acid sequence may further be homologous to or complementary to a part of the SEQ ID NO:3 that includes the complete SEQ ID NO:1. When the first nucleic acid sequence and the second nucleic acid sequence are used together, these nucleic acid sequences can be used as a DNA primer pair in a DNA amplification method for producing an amplification product. When the amplification product produced in the DNA amplification method using the DNA primer pair is an amplification product including SEQ ID NO:1, the presence of the transgenic corn event DBN9229 or its progeny can be diagnosed. The SEQ ID NO:3 or its complementary sequence is a sequence with a length of 1105 nucleotides located near the insertion junction site at the 5' end of the T-DNA insertion sequence in the transgenic corn event DBN9229. The SEQ ID NO:3 or its complementary sequence consists of 487 nucleotides of the 5' flanking sequence of the corn genome (nucleotides 1-487 of SEQ ID NO:3), 197 nucleotides of the DBN11815 construct DNA sequence (nucleotides 488-684 of SEQ ID NO:3), 195 nucleotides of the t35S cauliflower mosaic virus transcription terminator DNA sequence (nucleotides 685-879 of SEQ ID NO:3) and 226 nucleotides of the nucleotide sequence encoding the glufosinate herbicide tolerance agent PAT protein (nucleotides 880-1105 of SEQ ID NO:3). The presence of the transgenic corn event DBN9229 can be identified by the presence of SEQ ID NO:3 or its complementary sequence.
所述核酸序列可以为所述SEQ ID NO:4或其互补序列中T-DNA插入序列的任何部分的至少11个或更多个连续多核苷酸(第三核酸序列),或者为所述SEQ ID NO:4或其互补序列中3’侧翼玉米基因组DNA区域的任何部分的至少11个或更多个连续多核苷酸(第四核酸序列)。所述核酸序列进一步可以为同源于或互补于包含完整的所述SEQ ID NO:2的所述SEQ ID NO:4的一部分。当第三核酸序列和第四核酸序列一起使用时,这些核酸序列可作为DNA引物对用于产生扩增产物的DNA扩增方法中。使用DNA引物对在DNA扩增方法中产生的扩增产物是包括SEQ ID NO:2的扩增产物时,可以诊断转基因玉米事件DBN9229或其后代的存在。所述SEQ ID NO:4或其互补序列为转基因玉米事件DBN9229中在插入序列的3’末端位于T-DNA插入接合部位附近的一个长度为860个核苷酸的序列,所述SEQ ID NO:4或其互补序列由17个核苷酸的RB7核基质附着区序列(SEQ ID NO:4的核苷酸第1-17位)、380个核苷酸的DBN11815构建体DNA
序列(SEQ ID NO:4的核苷酸第18-397位)和463个核苷酸的玉米基因组3’侧翼序列(SEQ ID NO:4的核苷酸第398-860位)组成,包含所述SEQ ID NO:4或其互补序列即可鉴定为转基因玉米事件DBN9229的存在。The nucleic acid sequence may be at least 11 or more continuous polynucleotides (third nucleic acid sequence) of any part of the T-DNA insertion sequence in the SEQ ID NO:4 or its complementary sequence, or at least 11 or more continuous polynucleotides (fourth nucleic acid sequence) of any part of the 3' flanking corn genomic DNA region in the SEQ ID NO:4 or its complementary sequence. The nucleic acid sequence may further be homologous to or complementary to a portion of the SEQ ID NO:4 that includes the complete SEQ ID NO:2. When the third nucleic acid sequence and the fourth nucleic acid sequence are used together, these nucleic acid sequences can be used as DNA primer pairs in a DNA amplification method for producing an amplified product. When the amplified product produced in the DNA amplification method using the DNA primer pairs is an amplified product including SEQ ID NO:2, the presence of the transgenic corn event DBN9229 or its progeny can be diagnosed. The SEQ ID NO:4 or its complementary sequence is a sequence of 860 nucleotides located near the T-DNA insertion junction at the 3' end of the insertion sequence in the transgenic corn event DBN9229. The SEQ ID NO:4 or its complementary sequence consists of 17 nucleotides of the RB7 nuclear matrix attachment region sequence (nucleotides 1-17 of SEQ ID NO:4), 380 nucleotides of the DBN11815 construct DNA The transgenic corn event DBN9229 can be identified by comprising SEQ ID NO:4 or its complementary sequence.
在某些实施方案中,本领域技术人员可以通过检测玉米植物或其部分、种子、细胞或后代中是否存在下述核酸分子以判断是否存在转基因玉米事件DBN9229的DNA。In certain embodiments, one skilled in the art can determine whether the DNA of transgenic corn event DBN9229 is present by detecting the presence of the following nucleic acid molecules in corn plants or parts, seeds, cells or progeny thereof.
因此,在另一方面,本发明提供了一种核酸分子,所述核酸分子的核酸序列包含选自下述的任意一项:Therefore, in another aspect, the present invention provides a nucleic acid molecule, the nucleic acid sequence of which comprises any one selected from the following:
(1)对应于SEQ ID NO:3或其互补序列的第487位核苷酸及其上下游至少11个连续的核苷酸(例如,11、12、13、14、15、16、17、18、19、20、21、22、23、24、25、26、27、28、29、30个或更多个连续的核苷酸)。(1) Corresponding to nucleotide 487 of SEQ ID NO:3 or its complementary sequence and at least 11 consecutive nucleotides upstream and downstream thereof (e.g., 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30 or more consecutive nucleotides).
在某些实施方案中,所述核酸序列包含对应于SEQ ID NO:3或其互补序列的第487位核苷酸上游至少3个(例如,3、4、5、6、7、8、9、10、11、12、13、14、15、16、17、18、19、20或更多个)连续的核苷酸。In certain embodiments, the nucleic acid sequence comprises at least 3 (e.g., 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20 or more) consecutive nucleotides upstream of the 487th nucleotide corresponding to SEQ ID NO:3 or its complementary sequence.
在某些实施方案中,所述核酸序列包含对应于SEQ ID NO:3或其互补序列的第487位核苷酸下游至少3个(例如,3、4、5、6、7、8、9、10、11、12、13、14、15、16、17、18、19、20或更多个)连续的核苷酸。In certain embodiments, the nucleic acid sequence comprises at least 3 (e.g., 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20 or more) consecutive nucleotides downstream of the 487th nucleotide corresponding to SEQ ID NO:3 or its complementary sequence.
在某些实施方案中,所述核酸序列包含SEQ ID NO:1或其互补序列。In some embodiments, the nucleic acid sequence comprises SEQ ID NO:1 or its complementary sequence.
在某些实施方案中,所述核酸序列包含SEQ ID NO:6或其互补序列。In some embodiments, the nucleic acid sequence comprises SEQ ID NO:6 or its complementary sequence.
在某些实施方案中,所述核酸序列包含SEQ ID NO:3或其互补序列。In some embodiments, the nucleic acid sequence comprises SEQ ID NO:3 or its complementary sequence.
在某些实施方案中,所述互补是部分互补或完全互补。In certain embodiments, the complementarity is partial complementarity or complete complementarity.
在某些实施方案中,通过检测玉米植物或其部分、种子、细胞或后代中是否存在所述核酸分子以判断是否存在转基因玉米事件DBN9229的DNA。在某些实施方案中,所述转基因玉米事件DBN9229的种子的代表性样品已保藏于中国普通微生物菌种保藏管理中心,保藏编号为CGMCC No.45229。In some embodiments, the presence of the nucleic acid molecule in a corn plant or its part, seed, cell or progeny is detected to determine whether the DNA of the transgenic corn event DBN9229 exists. In some embodiments, a representative sample of the seeds of the transgenic corn event DBN9229 has been deposited in the China General Microbiological Culture Collection Center with the deposit number CGMCC No. 45229.
(2)对应于SEQ ID NO:4或其互补序列的第397位核苷酸及其上下游至少11个连续的核苷酸(例如,11、12、13、14、15、16、17、18、19、20、21、22、23、24、25、26、27、28、29、30个或更多个连续的核苷酸)。(2) Corresponding to nucleotide 397 of SEQ ID NO:4 or its complementary sequence and at least 11 consecutive nucleotides upstream and downstream thereof (e.g., 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30 or more consecutive nucleotides).
在某些实施方案中,所述核酸序列包含对应于SEQ ID NO:4或其互补序列的第397位核苷酸上游至少3个(例如,3、4、5、6、7、8、9、10、11或更多个)连续的核苷
酸。In certain embodiments, the nucleic acid sequence comprises at least 3 (e.g., 3, 4, 5, 6, 7, 8, 9, 10, 11 or more) consecutive nucleotides upstream of nucleotide 397 corresponding to SEQ ID NO: 4 or its complementary sequence. acid.
在某些实施方案中,所述核酸序列包含对应于SEQ ID NO:4或其互补序列的第397位核苷酸下游至少3个(例如,3、4、5、6、7、8、9、10、11或更多个)连续的核苷酸。In certain embodiments, the nucleic acid sequence comprises at least 3 (e.g., 3, 4, 5, 6, 7, 8, 9, 10, 11 or more) consecutive nucleotides downstream of the 397th nucleotide corresponding to SEQ ID NO:4 or its complementary sequence.
在某些实施方案中,所述核酸序列包含SEQ ID NO:2或其互补序列。In some embodiments, the nucleic acid sequence comprises SEQ ID NO:2 or its complementary sequence.
在某些实施方案中,所述核酸序列包含SEQ ID NO:7或其互补序列。In some embodiments, the nucleic acid sequence comprises SEQ ID NO:7 or its complementary sequence.
在某些实施方案中,所述核酸序列包含SEQ ID NO:4或其互补序列。In some embodiments, the nucleic acid sequence comprises SEQ ID NO:4 or its complementary sequence.
在某些实施方案中,所述互补是部分互补或完全互补。In certain embodiments, the complementarity is partial complementarity or complete complementarity.
进一步地,上述两方面核酸序列包含SEQ ID NO:5或其互补序列。Furthermore, the above two aspects of nucleic acid sequences contain SEQ ID NO: 5 or its complementary sequence.
所述SEQ ID NO:5或其互补序列为表征转基因玉米事件DBN9229的长度为12446个核苷酸的序列,其具体包含的基因组和遗传元件如表1所示。包含所述SEQ ID NO:5或其互补序列即可鉴定为转基因玉米事件DBN9229的存在。The SEQ ID NO: 5 or its complementary sequence is a sequence of 12446 nucleotides in length that characterizes the transgenic corn event DBN9229, and the specific genome and genetic elements contained therein are shown in Table 1. The presence of the transgenic corn event DBN9229 can be identified by the presence of the SEQ ID NO: 5 or its complementary sequence.
表1、SEQ ID NO:5包含的基因组及遗传元件
Table 1. Genome and genetic elements contained in SEQ ID NO: 5
Table 1. Genome and genetic elements contained in SEQ ID NO: 5
玉米植物及其制品Corn plants and their products
在另一方面,本申请提供一种玉米植物或其部分、种子、细胞或后代,其基因组包含如前所述的核酸分子。
In another aspect, the present application provides a corn plant or a part, seed, cell or progeny thereof, whose genome comprises the nucleic acid molecule as described above.
在某些实施方案中,所述玉米种子的代表性样品已保藏于中国普通微生物菌种保藏管理中心,保藏编号为CGMCC No.45229。In certain embodiments, representative samples of the corn seeds have been deposited in the China General Microbiological Culture Collection Center with the deposit number CGMCC No.45229.
在另一方面,本申请提供一种包含如前所述的玉米植物或其部分、种子、细胞或后代的制品。In another aspect, the present application provides a product comprising the corn plant as described above or a part, seed, cell or progeny thereof.
在某些实施方案中,所述制品包含所述玉米植物或其部分、种子、细胞或后代的基因组DNA。In certain embodiments, the preparation comprises genomic DNA of the corn plant, or a part, seed, cell, or progeny thereof.
在某些实施方案中,所述制品选自玉米耳穗、去苞叶玉米、玉米穗丝、玉米花粉、玉米糁、玉米粉、压碎玉米、玉米面、玉米油、玉米淀粉、玉米浆、玉米麦芽、玉米糖、玉米糖浆、由玉米油生产的人造黄油、不饱和玉米油、饱和玉米油、玉米片、爆玉米花、由玉米生产的乙醇和/或汁(liquor)、由玉米发酵产生的干酒糟(DDGS)、来自玉米的动物饲料、化妆品和填充剂中的一项或多项。In certain embodiments, the product is selected from one or more of corn ears, dehusked corn, corn silk, corn pollen, corn grits, corn flour, crushed corn, corn meal, corn oil, corn starch, corn steep liquor, corn malt, corn sugar, corn syrup, margarine produced from corn oil, unsaturated corn oil, saturated corn oil, corn flakes, popcorn, ethanol and/or liquor produced from corn, distillers dried grains (DDGS) produced from corn fermentation, animal feed from corn, cosmetics, and fillers.
检测方法Detection Methods
本领域技术人员熟知的,第一、第二、第三和第四核酸序列不必仅仅由DNA组成,也可包括RNA、DNA和RNA的混合物,或者DNA、RNA或其它不作为一种或多种聚合酶模板的核苷酸或其类似物的组合。此外,本发明中所述探针或引物应该是至少大约11、12、13、14、15、16、17、18、19、20、21或22个连续核苷酸的长度,其可以选自SEQ ID NO:1、SEQ ID NO:2、SEQ ID NO:3、SEQ ID NO:4和SEQ ID NO:5中所述的核苷酸或其片段。当选自SEQ ID NO:3、SEQ ID NO:4和SEQ ID NO:5所示的核苷酸时,所述探针和引物可以为长度是至少大约21个到大约50个或更多的连续核苷酸或其片段。As is well known to those skilled in the art, the first, second, third and fourth nucleic acid sequences need not consist of only DNA, but may also include RNA, a mixture of DNA and RNA, or a combination of DNA, RNA or other nucleotides or their analogs that do not serve as templates for one or more polymerases. In addition, the probe or primer of the present invention should be at least about 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21 or 22 consecutive nucleotides in length, which can be selected from the nucleotides or fragments thereof described in SEQ ID NO: 1, SEQ ID NO: 2, SEQ ID NO: 3, SEQ ID NO: 4 and SEQ ID NO: 5. When selected from the nucleotides shown in SEQ ID NO: 3, SEQ ID NO: 4 and SEQ ID NO: 5, the probe and primer can be a length of at least about 21 to about 50 or more consecutive nucleotides or fragments thereof.
所述核酸序列或其互补序列可用于DNA扩增方法中以产生扩增子,所述扩增子用于检测生物样品中转基因玉米事件DBN9229或其后代的存在;所述核酸序列或其互补序列可用于核苷酸检测方法中,以检测生物样品中转基因玉米事件DBN9229或其后代的存在。The nucleic acid sequence or its complementary sequence can be used in a DNA amplification method to produce an amplicon, which is used to detect the presence of transgenic corn event DBN9229 or its progeny in a biological sample; the nucleic acid sequence or its complementary sequence can be used in a nucleotide detection method to detect the presence of transgenic corn event DBN9229 or its progeny in a biological sample.
为实现上述目的,本发明还提供了一种检测样品中转基因玉米的DNA的方法,所述方法包括:To achieve the above object, the present invention also provides a method for detecting DNA of genetically modified corn in a sample, the method comprising:
(a)使所述样品与用于扩增所述DNA的引物(例如,至少两种引物)在核酸扩增反应或体系中接触;(a) contacting the sample with primers (e.g., at least two primers) for amplifying the DNA in a nucleic acid amplification reaction or system;
(b)进行核酸扩增反应;和
(b) performing a nucleic acid amplification reaction; and
(c)检测所述DNA或其扩增产物的存在;(c) detecting the presence of the DNA or its amplified product;
其中,所述DNA或其扩增产物包含如前所述的核酸序列。Wherein, the DNA or its amplified product comprises the nucleic acid sequence as described above.
在某些实施方案中,所述目标扩增产物包含SEQ ID NO:1或其互补序列、SEQ ID NO:2或其互补序列、SEQ ID NO:6或其互补序列、和/或SEQ ID NO:7或其互补序列。In some embodiments, the target amplification product comprises SEQ ID NO:1 or its complementary sequence, SEQ ID NO:2 or its complementary sequence, SEQ ID NO:6 or its complementary sequence, and/or SEQ ID NO:7 or its complementary sequence.
在某些实施方案中,在步骤(c)中,通过荧光定量PCR,测序,或印迹杂交,来检测所述DNA或其扩增产物的存在。In certain embodiments, in step (c), the presence of the DNA or its amplified product is detected by fluorescent quantitative PCR, sequencing, or blot hybridization.
在某些实施方案中,在步骤(a)中,提供至少一种探针,使所述探针与所述样品和引物接触。In certain embodiments, in step (a), at least one probe is provided and contacted with the sample and primers.
在某些实施方案中,所述样品是从玉米中提取的DNA样品。In certain embodiments, the sample is a DNA sample extracted from corn.
在某些实施方案中,所述引物包含如前所述的核酸分子的核酸序列。In certain embodiments, the primer comprises the nucleic acid sequence of a nucleic acid molecule as described above.
具体地,所述两种引物包括SEQ ID NO:1和SEQ ID NO:9、SEQ ID NO:8和SEQ ID NO:9、SEQ ID NO:2的互补序列和SEQ ID NO:11、SEQ ID NO:10和SEQ ID NO:11、或者SEQ ID NO:1和SEQ ID NO:2的互补序列。Specifically, the two primers include the complementary sequences of SEQ ID NO:1 and SEQ ID NO:9, SEQ ID NO:8 and SEQ ID NO:9, SEQ ID NO:2 and SEQ ID NO:11, SEQ ID NO:10 and SEQ ID NO:11, or SEQ ID NO:1 and SEQ ID NO:2.
在某些实施方案中,所述方法用于检测样品中转基因玉米事件DBN9229的DNA是否存在。In certain embodiments, the methods are used to detect the presence of DNA from transgenic corn event DBN9229 in a sample.
为实现上述目的,本发明还提供了一种检测样品中转基因玉米的DNA的方法,所述方法包括:To achieve the above object, the present invention also provides a method for detecting DNA of genetically modified corn in a sample, the method comprising:
(a)使所述样品与探针接触,所述探针包含如前所述的核酸分子的核酸序列;(a) contacting the sample with a probe, wherein the probe comprises the nucleic acid sequence of the nucleic acid molecule as described above;
(b)使所述待检测样品和所述探针在严格杂交条件下杂交;和(b) hybridizing the sample to be detected and the probe under stringent hybridization conditions; and
(c)检测所述待检测样品和所述探针的杂交情况。(c) detecting the hybridization between the sample to be detected and the probe.
在某些实施方案中,所述样品是从玉米中提取的DNA样品。In certain embodiments, the sample is a DNA sample extracted from corn.
在某些实施方案中,所述DNA包含如前所述的核酸分子的核酸序列。In certain embodiments, the DNA comprises the nucleic acid sequence of a nucleic acid molecule as described above.
所述严格条件可为在6×SSC(柠檬酸钠)、0.5% SDS(十二烷基硫酸钠)溶液中,在65℃下杂交,然后用2×SSC、0.1% SDS和1×SSC、0.1% SDS各洗膜1次。The stringent conditions may be hybridization at 65°C in a 6×SSC (sodium citrate), 0.5% SDS (sodium dodecyl sulfate) solution, and then washing the membrane once with 2×SSC, 0.1% SDS and once with 1×SSC, 0.1% SDS.
在某些实施方案中,所述探针包含SEQ ID NO:1或其互补序列、SEQ ID NO:2或其互补序列、SEQ ID NO:6或其互补序列、和/或SEQ ID NO:7或其互补序列。In some embodiments, the probe comprises SEQ ID NO:1 or its complementary sequence, SEQ ID NO:2 or its complementary sequence, SEQ ID NO:6 or its complementary sequence, and/or SEQ ID NO:7 or its complementary sequence.
可选地,至少一个所述探针用至少一种荧光基团标记。Optionally, at least one of said probes is labeled with at least one fluorescent group.
在某些实施方案中,所述检测探针包含荧光基团和淬灭基团,其中,所述荧光基团能够发出信号,并且,所述淬灭基团能够吸收或淬灭所述荧光基团发出的信号;并且,
所述探针在与其互补序列杂交的情况下发出的信号不同于在未与其互补序列杂交的情况下发出的信号。In certain embodiments, the detection probe comprises a fluorescent group and a quencher group, wherein the fluorescent group is capable of emitting a signal, and the quencher group is capable of absorbing or quenching the signal emitted by the fluorescent group; and The signal emitted by the probe when hybridized to its complementary sequence is different from the signal emitted when not hybridized to its complementary sequence.
在某些实施方案中,所述探针选自TaqMan探针,FRET探针,或其任意组合。In certain embodiments, the probe is selected from a TaqMan probe, a FRET probe, or any combination thereof.
为实现上述目的,本发明还提供了一种检测样品中转基因玉米的DNA的方法,所述方法包括:To achieve the above object, the present invention also provides a method for detecting DNA of genetically modified corn in a sample, the method comprising:
(a)使所述样品与标记物核酸分子接触,所述标记物核酸分子包括如前所述的核酸分子的核酸序列;(a) contacting the sample with a marker nucleic acid molecule, wherein the marker nucleic acid molecule comprises the nucleic acid sequence of the nucleic acid molecule as described above;
(b)使所述样品和所述标记物核酸分子在严格杂交条件下杂交;(b) hybridizing the sample and the marker nucleic acid molecule under stringent hybridization conditions;
(c)检测所述样品和所述标记物核酸分子的杂交情况,进而通过标记物辅助育种分析以确定昆虫抗性和/或除草剂耐受性与标记物核酸分子在遗传学上是连锁的。(c) detecting hybridization between the sample and the marker nucleic acid molecule, and then determining through marker-assisted breeding analysis that insect resistance and/or herbicide tolerance is genetically linked to the marker nucleic acid molecule.
在某些实施方案中,所述标记物核酸分子包括选自以下的至少一种:SEQ ID NO:1或其互补序列、SEQ ID NO:2或其互补序列、和/或SEQ ID NO:6-11或其互补序列。In some embodiments, the marker nucleic acid molecule includes at least one selected from the following: SEQ ID NO: 1 or its complementary sequence, SEQ ID NO: 2 or its complementary sequence, and/or SEQ ID NO: 6-11 or its complementary sequence.
为实现上述目的,本发明还提供了一种DNA检测试剂盒,所述试剂盒包括至少一个DNA分子,所述DNA分子包含如前所述的核酸分子的核酸序列。To achieve the above object, the present invention also provides a DNA detection kit, which comprises at least one DNA molecule, and the DNA molecule comprises the nucleic acid sequence of the nucleic acid molecule as described above.
在某些实施方案中,所述DNA分子可以作为对于转基因玉米事件DBN9229或其后代具有特异性的DNA引物之一或探针。In certain embodiments, the DNA molecule can be used as one of the DNA primers or probes specific to transgenic corn event DBN9229 or its progeny.
在某些实施方案中,所述DNA分子可以作为对于如前所述的玉米植物或其部分、种子、细胞或后代,或者如前所述的制品具有特异性的引物和/或探针。在某些实施方案中,所述引物具有如前所述中所定义。在某些实施方案中,所述探针具有如前所述中所定义。In certain embodiments, the DNA molecule can be used as a primer and/or probe for corn plant or its part, seed, cell or offspring as described above, or for goods as described above. In certain embodiments, the primer has as described above in definition. In certain embodiments, the probe has as described above in definition.
在某些实施方案中,所述DNA分子包含SEQ ID NO:1或其互补序列、SEQ ID NO:2或其互补序列、SEQ ID NO:6或其互补序列、和/或SEQ ID NO:7或其互补序列。In some embodiments, the DNA molecule comprises SEQ ID NO:1 or its complementary sequence, SEQ ID NO:2 or its complementary sequence, SEQ ID NO:6 or its complementary sequence, and/or SEQ ID NO:7 or its complementary sequence.
在某些实施方案中,所述方法用于检测样品中转基因玉米事件DBN9229的DNA是否存在。In certain embodiments, the methods are used to detect the presence of DNA from transgenic corn event DBN9229 in a sample.
为实现上述目的,本发明还提供了一种植物细胞,包含编码昆虫抗性Cry1Fa2蛋白的核酸序列、Cry2Ab2蛋白的核酸序列、编码草铵膦除草剂耐受性PAT蛋白的核酸序列和特定区域的核酸序列,所述特定区域的核酸序列包括SEQ ID NO:1、SEQ ID NO:2、SEQ ID NO:6和/或SEQ ID NO:7所示的序列。To achieve the above objectives, the present invention also provides a plant cell, comprising a nucleic acid sequence encoding an insect-resistant Cry1Fa2 protein, a nucleic acid sequence encoding a Cry2Ab2 protein, a nucleic acid sequence encoding a glufosinate herbicide-tolerant PAT protein and a nucleic acid sequence in a specific region, wherein the nucleic acid sequence in the specific region includes the sequence shown in SEQ ID NO:1, SEQ ID NO:2, SEQ ID NO:6 and/or SEQ ID NO:7.
在某些实施方案中,所述植物细胞包含编码昆虫抗性Cry1Fa2蛋白的核酸序列、
Cry2Ab2蛋白的核酸序列、编码草铵膦除草剂耐受性PAT蛋白的核酸序列和特定区域的核酸序列,所述特定区域的核酸序列包括SEQ ID NO:3和/或SEQ ID NO:4所示的序列。In certain embodiments, the plant cell comprises a nucleic acid sequence encoding an insect resistance Cry1Fa2 protein, The nucleic acid sequence of Cry2Ab2 protein, the nucleic acid sequence encoding the glufosinate herbicide-tolerant PAT protein and the nucleic acid sequence of a specific region, wherein the nucleic acid sequence of the specific region includes the sequence shown in SEQ ID NO:3 and/or SEQ ID NO:4.
在某些实施方案中,所述植物细胞的基因组依次包含SEQ ID NO:1、SEQ ID NO:5第685-11603位核酸序列和SEQ ID NO:2。In some embodiments, the genome of the plant cell comprises SEQ ID NO:1, SEQ ID NO:5 nucleic acid sequences at positions 685-11603 and SEQ ID NO:2, in sequence.
在某些实施方案中,所述植物细胞的基因组包含SEQ ID NO:5所示的序列。In some embodiments, the genome of the plant cell comprises the sequence shown in SEQ ID NO:5.
为实现上述目的,本发明还提供了一种保护玉米植物免于昆虫侵袭的方法,所述方法包括在靶昆虫的膳食中提供至少一种转基因玉米植物细胞,所述转基因玉米植物细胞在其基因组中包含SEQ ID NO:1和/或SEQ ID NO:2所示的序列。To achieve the above objectives, the present invention also provides a method for protecting corn plants from insect attack, the method comprising providing at least one transgenic corn plant cell in the diet of the target insect, the transgenic corn plant cell comprising the sequence shown in SEQ ID NO:1 and/or SEQ ID NO:2 in its genome.
在某些实施方案中,摄食所述转基因玉米植物细胞的靶昆虫被抑制进一步摄食所述转基因玉米植物。In certain embodiments, target insects that feed on cells of the transgenic corn plant are inhibited from further feeding on the transgenic corn plant.
在某些实施方案中,所述转基因玉米植物细胞在其基因组中包含SEQ ID NO:3和/或SEQ ID NO:4所示的序列。In some embodiments, the transgenic corn plant cell contains the sequence shown in SEQ ID NO:3 and/or SEQ ID NO:4 in its genome.
在某些实施方案中,所述转基因玉米植物细胞在其基因组中依次包含SEQ ID NO:1、SEQ ID NO:5第685-11603位核酸序列和SEQ ID NO:2,或者包含SEQ ID NO:5。In some embodiments, the transgenic corn plant cell contains SEQ ID NO:1, SEQ ID NO:5 nucleic acid sequences at positions 685-11603 and SEQ ID NO:2 in sequence in its genome, or contains SEQ ID NO:5.
在某些实施方案中,所述转基因玉米植物细胞获自如前所述的玉米植物或其部分、种子、细胞或后代,或者如前所述的制品。In certain embodiments, the transgenic corn plant cell is obtained from a corn plant as described above, or a part, seed, cell, or progeny thereof, or a preparation as described above.
在某些实施方案中,所述昆虫为鳞翅目害虫。In certain embodiments, the insect is a pest of the order Lepidoptera.
在某些实施方案中,所述昆虫选自草地贪夜蛾(Spodoptera frugiperda)、东方黏虫(Mythimna seperata)、亚洲玉米螟(Ostrinia furnacalis)、棉铃虫(Helicoverpa armiger)、桃蛀螟(Conogethes punctiferalis)、斜纹夜蛾(Spodoptera litura)、小地老虎(Agrotis ypsilon Rottemberg)、欧洲玉米螟(Ostrinia nubilalis)、谷实夜蛾(Helicoverpa zea)、西南玉米螟(Diatraea grandiosella),或其任意组合。In some embodiments, the insect is selected from the group consisting of Spodoptera frugiperda, Mythimna seperata, Ostrinia furnacalis, Helicoverpa armiger, Conogethes punctiferalis, Spodoptera litura, Agrotis ypsilon Rottemberg, Ostrinia nubilalis, Helicoverpa zea, Diatraea grandiosella, or any combination thereof.
为实现上述目的,本发明还提供了一种保护玉米植物免受由除草剂引起的损伤或控制种植玉米植物的大田中杂草的方法,所述方法包括将有效剂量的草铵膦除草剂施加到种植至少一种转基因玉米植物的大田中,所述转基因玉米植物在其基因组中包含SEQ ID NO:1和/或SEQ ID NO:2所示的序列,所述转基因玉米植物对草铵膦除草剂具有耐受性。To achieve the above objectives, the present invention also provides a method for protecting corn plants from damage caused by herbicides or controlling weeds in a field where corn plants are planted, the method comprising applying an effective dose of glufosinate herbicide to a field where at least one transgenic corn plant is planted, wherein the transgenic corn plant contains the sequence shown in SEQ ID NO:1 and/or SEQ ID NO:2 in its genome, and the transgenic corn plant is tolerant to glufosinate herbicide.
在某些实施方案中,所述转基因玉米植物包含对所述草铵膦除草剂具有抗性的基因
(例如,膦丝菌素N-乙酰基转移酶cPAT)。In certain embodiments, the transgenic corn plant comprises a gene that confers resistance to the glufosinate herbicide (eg, phosphinothricin N-acetyltransferase cPAT).
在某些实施方案中,所述转基因玉米植物在其基因组中包含SEQ ID NO:3和/或SEQ ID NO:4所示的序列。In some embodiments, the transgenic corn plant contains the sequence shown in SEQ ID NO:3 and/or SEQ ID NO:4 in its genome.
在某些实施方案中,所述转基因玉米植物在其基因组中依次包含SEQ ID NO:1、SEQ ID NO:5第685-11603位核酸序列和SEQ ID NO:2,或者包含SEQ ID NO:5所示的序列。In some embodiments, the transgenic corn plant contains the nucleic acid sequences of SEQ ID NO:1, SEQ ID NO:5 positions 685-11603 and SEQ ID NO:2 in sequence in its genome, or contains the sequence shown in SEQ ID NO:5.
在某些实施方案中,所述转基因玉米植物是或获自如前所述的玉米植物或其部分、种子、细胞或后代。In certain embodiments, the transgenic corn plant is or is obtained from a corn plant as described above, or a part, seed, cell or progeny thereof.
为实现上述目的,本发明还提供了一种培养对昆虫具有抗性和/或耐受草铵膦除草剂的玉米植物的方法,所述方法包括:To achieve the above object, the present invention also provides a method for cultivating corn plants that are resistant to insects and/or tolerant to glufosinate-ammonium herbicides, the method comprising:
(a)种植至少一粒玉米种子,所述玉米种子的基因组中包含编码昆虫抗性Cry2Ab2蛋白的核酸序列、Cry1Fa2蛋白的核酸序列和/或编码草铵膦除草剂耐受性PAT蛋白的核酸序列、以及特定区域的核酸序列;或者所述玉米种子的基因组中包含SEQ ID NO:5所示的核酸序列;(a) planting at least one corn seed, wherein the genome of the corn seed comprises a nucleic acid sequence encoding an insect resistance Cry2Ab2 protein, a nucleic acid sequence of a Cry1Fa2 protein and/or a nucleic acid sequence encoding a glufosinate herbicide tolerance PAT protein, and a nucleic acid sequence in a specific region; or the genome of the corn seed comprises the nucleic acid sequence shown in SEQ ID NO:5;
(b)使所述玉米种子长成玉米植株;(b) growing the corn seeds into corn plants;
(c)用靶昆虫侵袭所述玉米植株和/或用有效剂量草铵膦除草剂喷洒所述玉米植株,收获与其他不具有特定区域的核酸序列的植株相比具有减弱的植物损伤的玉米植株;(c) infesting the corn plants with target insects and/or spraying the corn plants with an effective amount of glufosinate herbicide, and harvesting corn plants having reduced plant damage compared to other plants not having the nucleic acid sequence of the specific region;
所述特定区域的核酸序列包含SEQ ID NO:1和/或SEQ ID NO:2所示的序列。在某些实施方案中,所述特定区域的核酸序列包含SEQ ID NO:3和/或SEQ ID NO:4所示的序列。The nucleic acid sequence of the specific region comprises the sequence shown in SEQ ID NO: 1 and/or SEQ ID NO: 2. In certain embodiments, the nucleic acid sequence of the specific region comprises the sequence shown in SEQ ID NO: 3 and/or SEQ ID NO: 4.
在某些实施方案中,所述昆虫为鳞翅目害虫。In certain embodiments, the insect is a pest of the order Lepidoptera.
在某些实施方案中,所述昆虫选自草地贪夜蛾(Spodoptera frugiperda)、东方黏虫(Mythimna seperata)、亚洲玉米螟(Ostrinia furnacalis)、棉铃虫(Helicoverpa armiger)、桃蛀螟(Conogethes punctiferalis)、斜纹夜蛾(Spodoptera litura)、小地老虎(Agrotis ypsilon Rottemberg)、欧洲玉米螟(Ostrinia nubilalis)、谷实夜蛾(Helicoverpa zea)、西南玉米螟(Diatraea grandiosella),或其任意组合。In some embodiments, the insect is selected from the group consisting of Spodoptera frugiperda, Mythimna seperata, Ostrinia furnacalis, Helicoverpa armiger, Conogethes punctiferalis, Spodoptera litura, Agrotis ypsilon Rottemberg, Ostrinia nubilalis, Helicoverpa zea, Diatraea grandiosella, or any combination thereof.
在某些实施方案中,所述玉米种子是或获自如前所述的玉米植物或其部分、种子、细胞或后代。In certain embodiments, the corn seed is or is obtained from a corn plant, or a part, seed, cell, or progeny thereof, as described above.
为实现上述目的,本发明还提供了一种产生对昆虫具有抗性和/或对草铵膦除草剂具有耐受性的玉米植株的方法,所述方法包括将第一玉米植物基因组中包含的编码昆虫抗
性Cry2Ab2蛋白的核酸序列、Cry1Fa2蛋白的核酸序列和/或编码草铵膦耐受性PAT蛋白的核酸序列、和特定区域的核酸序列,所述特定区域的核酸序列包含选自SEQ ID NO:1、SEQ ID NO:2、SEQ ID NO:3、SEQ ID NO:4、SEQ ID NO:5、SEQ ID NO:6和SEQ ID NO:7所示序列中至少一种核酸序列。To achieve the above object, the present invention also provides a method for producing a corn plant resistant to insects and/or tolerant to glufosinate-ammonium herbicides, the method comprising: modifying a gene encoding insect resistance contained in a first corn plant genome to generate a gene encoding insect resistance; The nucleic acid sequence of the present invention comprises a nucleic acid sequence encoding a Cry2Ab2 protein, a nucleic acid sequence of a Cry1Fa2 protein and/or a nucleic acid sequence encoding a glufosinate-tolerant PAT protein, and a nucleic acid sequence in a specific region, wherein the nucleic acid sequence in the specific region comprises at least one nucleic acid sequence selected from the group consisting of SEQ ID NO:1, SEQ ID NO:2, SEQ ID NO:3, SEQ ID NO:4, SEQ ID NO:5, SEQ ID NO:6 and SEQ ID NO:7.
在某些实施方案中,所述方法包括将第一玉米植物基因组中包含的编码昆虫抗性Cry1Fa2蛋白的核酸序列、Cry2Ab2蛋白的核酸序列和/或编码草铵膦耐受性PAT蛋白的核酸序列、以及特定区域的核酸序列,或者将所述第一玉米植物基因组中包含的SEQ ID NO:5所示的核酸序列,引入第二玉米植物,从而产生大量子代植株;选择具有所述特定区域的核酸序列的所述子代植株,且所述子代植株对昆虫具有抗性和/或对草铵膦除草剂具有耐受性;所述特定区域的核酸序列包含SEQ ID NO:1和/或SEQ ID NO:2所示的序列。在某些实施方案中,所述特定区域的核酸序列包含SEQ ID NO:3和/或SEQ ID NO:4所示的序列。In some embodiments, the method includes introducing the nucleic acid sequence encoding the insect-resistant Cry1Fa2 protein, the nucleic acid sequence of the Cry2Ab2 protein and/or the nucleic acid sequence encoding the glufosinate-tolerant PAT protein, and the nucleic acid sequence of the specific region contained in the genome of the first corn plant, or the nucleic acid sequence shown in SEQ ID NO:5 contained in the genome of the first corn plant, into the second corn plant, thereby producing a large number of progeny plants; selecting the progeny plants having the nucleic acid sequence of the specific region, and the progeny plants are resistant to insects and/or tolerant to glufosinate-ammonium herbicides; the nucleic acid sequence of the specific region includes the sequence shown in SEQ ID NO:1 and/or SEQ ID NO:2. In some embodiments, the nucleic acid sequence of the specific region includes the sequence shown in SEQ ID NO:3 and/or SEQ ID NO:4.
在某些实施方案中,所述方法包括将转基因玉米事件DBN9229与另外的的玉米植株(例如,缺少昆虫抗性和/或草铵膦耐受性的玉米植株)有性杂交,从而产生大量子代植株,选择具有所述特定区域的核酸序列的所述子代植株;所述特定区域的核酸序列包含SEQ ID NO:1和/或SEQ ID NO:2所示的序列。在某些实施方案中,所述特定区域的核酸序列包含SEQ ID NO:3和/或SEQ ID NO:4所示的序列。In some embodiments, the method comprises sexually crossing transgenic corn event DBN9229 with another corn plant (e.g., a corn plant lacking insect resistance and/or glufosinate tolerance), thereby producing a plurality of progeny plants, and selecting the progeny plants having the nucleic acid sequence of the specific region; the nucleic acid sequence of the specific region comprises the sequence shown in SEQ ID NO: 1 and/or SEQ ID NO: 2. In some embodiments, the nucleic acid sequence of the specific region comprises the sequence shown in SEQ ID NO: 3 and/or SEQ ID NO: 4.
在某些实施方案中,所述方法包括将第一代子代植株自交,由此产生多个第二代子代植株;用靶昆虫侵袭和/或用草铵膦处理所述子代植株;选择对昆虫具有抗性和/或对草铵膦除草剂具有耐受性的所述子代植株。In certain embodiments, the method comprises selfing a first generation progeny plant, thereby producing a plurality of second generation progeny plants; infesting the progeny plants with a target insect and/or treating the progeny plants with glufosinate; and selecting the progeny plants for resistance to the insect and/or tolerance to the glufosinate herbicide.
在某些实施方案中,所述玉米植株是或获自如前所述的玉米植物或其部分、种子、细胞或后代。In certain embodiments, the corn plant is or is obtained from a corn plant as described above, or a part, seed, cell or progeny thereof.
在某些实施方案中,所述方法还包括将所述对昆虫具有抗性和/或对草铵膦除草剂具有耐受性的子代植株与另一玉米亲本进行有性杂交,并且收获由此生产的杂交种子。In certain embodiments, the method further comprises sexually crossing the insect-resistant and/or glufosinate-tolerant progeny plant with another corn parent and harvesting hybrid seed produced thereby.
在某些实施方案中,所述昆虫为鳞翅目害虫。In certain embodiments, the insect is a pest of the order Lepidoptera.
在某些实施方案中,所述昆虫选自草地贪夜蛾(Spodoptera frugiperda)、东方黏虫(Mythimna seperata)、亚洲玉米螟(Ostrinia furnacalis)、棉铃虫(Helicoverpa armiger)、桃蛀螟(Conogethes punctiferalis)、斜纹夜蛾(Spodoptera litura)、小地老虎(Agrotis ypsilon Rottemberg)、欧洲玉米螟(Ostrinia nubilalis)、谷实夜蛾(Helicoverpa zea)、西南玉米螟(Diatraea grandiosella),或其任意组合。
In certain embodiments, the insect is selected from the group consisting of Spodoptera frugiperda, Mythimna seperata, Ostrinia furnacalis, Helicoverpa armiger, Conogethes punctiferalis, Spodoptera litura, Agrotis ypsilon Rottemberg, Ostrinia nubilalis, Helicoverpa zea, Diatraea grandiosella, or any combination thereof.
为实现上述目的,本发明还提供了一种产生自转基因玉米事件DBN9229的农产品或商品,所述农产品或商品为玉米粗粉、玉米面、玉米油、玉米穗丝、玉米淀粉、玉米面筋、玉米饼、化妆品或填充剂。To achieve the above objectives, the present invention also provides an agricultural product or commodity produced from the transgenic corn event DBN9229, wherein the agricultural product or commodity is corn meal, corn flour, corn oil, corn silk, corn starch, corn gluten, corn tortillas, cosmetics or fillers.
术语定义Definition of terms
在本发明用于检测玉米植物的核酸序列及其检测方法中,以下定义和方法可以更好地定义本发明和指导本领域的普通技术人员实施本发明,除非另作说明,根据本领域普通技术人员的常规的用法来理解术语。In the present invention for detecting nucleic acid sequences of corn plants and their detection methods, the following definitions and methods can better define the present invention and guide ordinary technicians in the field to implement the present invention. Unless otherwise specified, the terms are understood according to the conventional usage of ordinary technicians in the field.
在文本中,术语“玉米”是指玉蜀黍(Zea mays),并且包括可以与玉米交配的所有植物品种,包括野生玉米种。In this text, the term "corn" refers to maize (Zea mays) and includes all plant varieties that can be crossed with maize, including wild corn species.
在文本中,术语“包含”、“包括”或“含有”是指“包括但不限于”。As used herein, the terms "comprising", "including", or "containing" mean "including but not limited to".
在文本中,术语“植物”包括整株植物、植物细胞、植物器官、植物原生质体、植物可以从中再生的植物细胞组织培养物、植物愈伤组织、植物丛(plant clumps)和植物或植物部分中完整的植物细胞,所述植物部分例如胚、花粉、胚珠、种子、叶、花、枝、果实、茎秆、根、根尖、花药等。应理解为本发明范围内的转基因植物的部分包括但不限于植物细胞、原生质体、组织、愈伤组织、胚以及花、茎、果实、叶和根,以上植物部分源自事先用本发明的DNA分子转化的并因此至少部分地由转基因细胞组成的转基因植物或其子代。In the text, the term "plant" includes whole plants, plant cells, plant organs, plant protoplasts, plant cell tissue cultures from which plants can be regenerated, plant calli, plant clumps, and intact plant cells in plants or plant parts, such as embryos, pollen, ovules, seeds, leaves, flowers, branches, fruits, stalks, roots, root tips, anthers, etc. It should be understood that the parts of transgenic plants within the scope of the present invention include, but are not limited to, plant cells, protoplasts, tissues, calli, embryos, and flowers, stems, fruits, leaves and roots, which are derived from transgenic plants or their progeny that have been previously transformed with the DNA molecules of the present invention and are therefore at least partially composed of transgenic cells.
在文本中,术语“基因”是指表达特定蛋白的核酸片段。在某些实施方案中,所述基因包括编码序列前的调节序列(5’非编码序列)和编码序列后的调节序列(3’非编码序列)。“天然基因”是指天然发现具有其自身调节序列的基因。“嵌合基因”是指不是天然基因的任何基因,其包含非天然发现的调节和编码序列。“内源基因”是指天然基因,所述天然基因位于生物体基因组中它的天然位置。“外源基因”是现存在于生物的基因组中且原来不存在的外来基因,也指经转基因步骤导入受体细胞的基因。外源基因可以包含插入非天然生物体的天然基因或嵌合基因。“转基因”是通过转化程序已经被引入基因组的基因。植物基因组中重组DNA已被插入的位点可以称为“插入位点”或“靶位点”。In the text, the term "gene" refers to a nucleic acid fragment that expresses a specific protein. In certain embodiments, the gene includes a regulatory sequence (5' non-coding sequence) before the coding sequence and a regulatory sequence (3' non-coding sequence) after the coding sequence. "Native gene" refers to a gene found in nature with its own regulatory sequence. "Chimeric gene" refers to any gene that is not a natural gene, which contains regulatory and coding sequences found in non-native. "Endogenous gene" refers to a natural gene, which is located in its natural position in the genome of an organism. "Foreign gene" is a foreign gene that is now present in the genome of an organism and did not originally exist, and also refers to a gene introduced into a recipient cell through a transgenic step. Foreign genes can include natural genes or chimeric genes inserted into non-natural organisms. "Transgenic" is a gene that has been introduced into the genome through a transformation procedure. The site in the plant genome where recombinant DNA has been inserted can be called an "insertion site" or a "target site."
在文本中,术语“侧翼DNA”可以包含天然存在于例如植物的生物体中的基因组或通过转化过程引入的外源(异源)DNA,例如与转化事件相关的片段。因此,侧翼DNA可以包括天然和外源DNA的组合。在本发明中,“侧翼DNA”亦称“侧翼区”或“侧翼序列”
或“侧翼基因组序列”或“侧翼基因组DNA”,是指至少3、5、10、11、15、20、50、100、200、300、400、1000、1500、2000、2500或5000碱基对或更长的序列,其位于最初外源插入DNA分子的直接上游或下游并且与最初外源插入DNA分子相邻。当该侧翼区位于下游时,其也可以称为“3’侧翼”或“右边界侧翼”等。当该侧翼区位于上游时,其也可以称为“5’侧翼”或“左边界侧翼”等。In the text, the term "flanking DNA" may include exogenous (heterologous) DNA naturally present in the genome of an organism such as a plant or introduced by a transformation process, such as a fragment associated with a transformation event. Therefore, flanking DNA may include a combination of natural and exogenous DNA. In the present invention, "flanking DNA" is also referred to as "flanking region" or "flanking sequence". Or "flanking genomic sequence" or "flanking genomic DNA" refers to a sequence of at least 3, 5, 10, 11, 15, 20, 50, 100, 200, 300, 400, 1000, 1500, 2000, 2500 or 5000 base pairs or longer, which is located directly upstream or downstream of the original exogenous inserted DNA molecule and is adjacent to the original exogenous inserted DNA molecule. When the flanking region is located downstream, it can also be referred to as "3'flank" or "right border flank", etc. When the flanking region is located upstream, it can also be referred to as "5'flank" or "left border flank", etc.
引起外源DNA的随机整合的转化程序会导致含有不同侧翼区的转化体,所述不同侧翼区是每个转化体所特异性含有的。当重组DNA通过传统杂交被引入植物时,其侧翼区通常不会改变。转化体也会含有异源插入物DNA和基因组DNA的段之间或两段基因组DNA之间或两段异源DNA之间的独特的接合。“接合”是两个具体的DNA片段连接的点。例如,接合存在于插入物DNA连接侧翼DNA的位置。接合点还存在于转化的生物体中,其中两个DNA片段以修饰自天然生物体中发现的方式的连接在一起。“接合区域”或“接合序列”是指包含接合点的DNA。The transformation procedure that causes random integration of foreign DNA can result in transformants containing different flanking regions, which are specifically contained by each transformant. When recombinant DNA is introduced into plants by traditional hybridization, its flanking regions usually do not change. Transformants also can contain a unique junction between the segments of heterologous insert DNA and genomic DNA or between two sections of genomic DNA or between two sections of heterologous DNA. "Joint" is the point where two specific DNA fragments connect. For example, the junction is present at the position where the insert DNA connects to the flanking DNA. Junction points are also present in transformed organisms, where two DNA fragments are connected together in a way modified from natural organisms. "Joint region" or "junction sequence" refers to the DNA comprising a junction point.
本发明提供了称为DBN9229的转基因玉米事件及其后代,所述转基因玉米事件DBN9229亦称为玉米植物DBN9229,其包括转基因玉米事件DBN9229的植物和种子及其植物细胞或其可再生部分,所述转基因玉米事件DBN9229的植物部分,包括但不限于细胞、花粉、胚珠、花、芽、根、茎、穗丝、花序、耳穗、叶和来自玉米植物DBN9229的产物,例如玉米粗粉、玉米面、玉米油、玉米浆、玉米穗丝、玉米淀粉和留在玉米作物田间的生物量。The present invention provides a transgenic corn event called DBN9229 and its progeny, wherein the transgenic corn event DBN9229 is also called corn plant DBN9229, which includes plants and seeds of the transgenic corn event DBN9229 and plant cells or their regenerable parts, and the plant parts of the transgenic corn event DBN9229, including but not limited to cells, pollen, ovules, flowers, buds, roots, stems, silks, inflorescences, ears, leaves and products from the corn plant DBN9229, such as corn meal, corn flour, corn oil, corn steep liquor, corn silk, corn starch and biomass left in the corn crop field.
本发明转基因玉米事件DBN9229包含了一个DNA构建体,当其在植物细胞内表达时,所述转基因玉米事件DBN9229获得对昆虫的抗性和对草铵膦除草剂的耐受性。所述DNA构建体包含三个串联的表达盒,第一个表达盒包含用于在植物中表达的适合的启动子和适合的多聚腺苷酸化信号序列,所述启动子可操作地连接Cry1Fa2蛋白的核酸序列,所述Cry1Fa2蛋白的核酸序列主要对鳞翅目昆虫具有抗性。第二个表达盒包含用于在植物中表达的适合的启动子和适合的多聚腺苷酸化信号序列,所述启动子可操作地连接Cry2Ab2蛋白的核酸序列,所述Cry2Ab2蛋白的核酸序列主要对鳞翅目昆虫具有抗性。第三个表达盒包含用于在植物中表达的适合的启动子和适合的多聚腺苷酸化信号序列,所述启动子可操作地连接编码膦丝菌素N-乙酰基转移酶(phosphinothricin N-acetyltransferase,PAT)的基因,所述PAT蛋白的核酸序列对草铵膦除草剂具有耐受性。The transgenic corn event DBN9229 of the present invention comprises a DNA construct, and when it is expressed in plant cells, the transgenic corn event DBN9229 obtains resistance to insects and tolerance to glufosinate herbicides. The DNA construct comprises three expression cassettes in series, the first expression cassette comprises a suitable promoter and a suitable polyadenylation signal sequence for expression in plants, the promoter is operably connected to the nucleic acid sequence of Cry1Fa2 protein, and the nucleic acid sequence of Cry1Fa2 protein is mainly resistant to lepidopteran insects. The second expression cassette comprises a suitable promoter and a suitable polyadenylation signal sequence for expression in plants, the promoter is operably connected to the nucleic acid sequence of Cry2Ab2 protein, and the nucleic acid sequence of Cry2Ab2 protein is mainly resistant to lepidopteran insects. The third expression cassette comprises a suitable promoter and a suitable polyadenylation signal sequence for expression in plants, wherein the promoter is operably linked to a gene encoding phosphinothricin N-acetyltransferase (PAT), and the nucleic acid sequence of the PAT protein is tolerant to glufosinate herbicide.
Cry2Ab2杀虫蛋白和Cry1Fa2杀虫蛋白是众多杀虫蛋白中的两种,其是由苏云金芽
孢杆菌(Bacillus thuringiensis,简称Bt)产生的不溶性伴孢结晶蛋白。Cry2Ab2蛋白或Cry1Fa2蛋白被昆虫摄入进入中肠,毒蛋白原毒素被溶解在昆虫中肠的碱性pH环境下,蛋白N-和C-末端被碱性蛋白酶消化,将原毒素转变成活性片段,活性片段和昆虫中肠上皮细胞膜上表面上受体结合,插入肠膜,导致细胞膜出现穿孔病灶,破坏细胞膜内外的渗透压变化及pH平衡等,扰乱昆虫的消化过程,最终导致其死亡。所述Cry2Ab2基因和Cry1Fa2基因可以通过优化密码子或者以其它方式改变其核苷酸序列,以达到增加转化细胞中转录物的稳定性和可利用性的目的。Cry2Ab2基因和Cry1Fa2基因的序列可以从公共数据库(例如,Genebank)中获得。Cry2Ab2 insecticidal protein and Cry1Fa2 insecticidal protein are two of many insecticidal proteins, which are produced by Insoluble spore-associated crystalline protein produced by Bacillus thuringiensis (Bt for short). Cry2Ab2 protein or Cry1Fa2 protein is ingested by insects and enters the midgut, and the protoxin is dissolved in the alkaline pH environment of the insect midgut, and the N- and C-termini of the protein are digested by alkaline proteases, converting the protoxin into active fragments, which bind to receptors on the surface of the insect midgut epithelial cell membrane and insert into the intestinal membrane, causing perforation lesions in the cell membrane, destroying the osmotic pressure changes and pH balance inside and outside the cell membrane, etc., disrupting the digestion process of the insect, and ultimately causing its death. The Cry2Ab2 gene and Cry1Fa2 gene can be obtained by optimizing codons or changing their nucleotide sequences in other ways to increase the stability and availability of transcripts in transformed cells. The sequences of the Cry2Ab2 gene and the Cry1Fa2 gene can be obtained from public databases (e.g., Genebank).
在文本中,术语“鳞翅目(Lepidoptera)”,包括蛾、蝶两类昆虫,是农林害虫最多的一个目,如小地老虎、棉铃虫、斜纹夜蛾、二点委夜蛾、桃蛀螟等。In the text, the term "Lepidoptera" includes two types of insects: moths and butterflies. It is the order with the most agricultural and forestry pests, such as the black cutworm, cotton bollworm, Spodoptera litura, Spodoptera two-spotted camphor, and peach borer.
所述膦丝菌素N-乙酰基转移酶(PAT)基因可以是从链霉菌(Streptomyces viridochromogenes)菌株分离的酶,通过乙酰化催化L-膦丝菌素转化为其无活性形式,以赋予植物对草铵膦除草剂的耐受性。Phosphinothricin(PTC,2-氨基-4-甲膦酰丁酸)是谷氨酰胺合成酶的抑制剂。PTC是抗生素2-氨基-4-甲膦酰-丙氨酰-丙氨酸的结构单位,此三肽(PTT)具有抗革兰氏阳性和革兰氏阴性细菌以及抗真菌灰葡萄孢(Botrytis cinerea)的活性。膦丝菌素N-乙酰基转移酶(PAT)基因也可以作为选择性标记基因。The phosphinothricin N-acetyltransferase (PAT) gene can be an enzyme isolated from a strain of Streptomyces viridochromogenes, which catalyzes the conversion of L-phosphinothricin to its inactive form by acetylation to confer tolerance to glufosinate herbicides on plants. Phosphinothricin (PTC, 2-amino-4-methylphosphonobutyric acid) is an inhibitor of glutamine synthetase. PTC is the structural unit of the antibiotic 2-amino-4-methylphosphono-alanyl-alanine, and this tripeptide (PTT) has activity against Gram-positive and Gram-negative bacteria and against the fungus Botrytis cinerea. The phosphinothricin N-acetyltransferase (PAT) gene can also be used as a selective marker gene.
在文本中,术语“草铵膦”又名草丁膦,是指2-氨基-4-[羟基(甲基)膦酰基]丁酸铵,用“草铵膦除草剂”处理是指使用任何一种含有草铵膦的除草剂制剂进行处理。为了达到有效生物学剂量而对某种草铵膦制剂使用率的选择不超过普通农艺技术人员的技能。使用任何一种含有草铵膦的除草剂制剂处理包含了来源于转基因玉米事件DBN9229的植物材料的田地,将控制所述田地中的杂草生长,并且不影响来源于转基因玉米事件DBN9229的植物材料的生长或产量。In the text, the term "phosphinothricin ammonium", also known as glufosinate, refers to 2-amino-4-[hydroxy(methyl)phosphonyl]butyric acid ammonium, and treatment with "phosphinothricin ammonium herbicide" refers to treatment with any herbicide formulation containing glufosinate ammonium. The selection of the use rate of a certain glufosinate ammonium formulation in order to achieve an effective biological dose is no more than the skill of ordinary agronomic technicians. The use of any herbicide formulation containing glufosinate ammonium to treat a field containing plant material derived from transgenic corn event DBN9229 will control the growth of weeds in the field and will not affect the growth or yield of plant material derived from transgenic corn event DBN9229.
在文本中,所述DNA构建体采用转化方法被引入到植物中,所述转化方法包括但不限于,农杆菌(Agrobacterium)介导转化法、基因枪转化法和花粉管通道转化法。In the text, the DNA construct is introduced into the plant using a transformation method, including but not limited to Agrobacterium-mediated transformation, biolistic transformation, and pollen tube pathway transformation.
所述农杆菌介导转化法是植物转化的常用方法。将要引入到植物中的外源DNA克隆到载体的左和右边界共有序列之间,即T-DNA区。所述载体被转化到农杆菌细胞中,随后,所述农杆菌细胞用于感染植物组织,包含外源DNA的载体的所述T-DNA区被插入到植物基因组中。The Agrobacterium-mediated transformation method is a common method for plant transformation. The foreign DNA to be introduced into the plant is cloned between the left and right border consensus sequences of the vector, i.e., the T-DNA region. The vector is transformed into Agrobacterium cells, which are then used to infect plant tissues, and the T-DNA region of the vector containing the foreign DNA is inserted into the plant genome.
所述基因枪转化法即为用包含外源DNA的载体轰击植物细胞(粒子介导的生物弹击转化)。
The gene gun transformation method is to bombard plant cells with vectors containing foreign DNA (particle-mediated biolistic transformation).
所述花粉管通道转化法是利用植物授粉后所形成的天然的花粉管通道(又名花粉管引导组织),经珠心通道,将外源DNA携带入胚囊。The pollen tube channel transformation method utilizes the natural pollen tube channel (also known as pollen tube guiding tissue) formed after plant pollination to carry exogenous DNA into the embryo sac through the nucellus channel.
转化后,可以将转化的植物组织再生成转基因植物,并且利用适合的标记选择具有外源DNA的后代。Following transformation, the transformed plant tissue can be regenerated into transgenic plants, and progeny harboring the foreign DNA selected using appropriate markers.
DNA构建体是DNA分子互相连接起来的组合,该组合提供了一个或多个表达盒。DNA构建体优选地是能够在细菌细胞内自我复制,而且含有不同的限制性内切酶位点的质粒,所含的限制性内切酶位点用于导入提供功能性基因元件,即启动子、内含子、前导序列、编码序列、3’终止子区域和其他序列的DNA分子。DNA构建体中所含有的表达盒包括提供信使RNA的转录所必需的基因元件,所述表达盒可以设计为在原核细胞或真核细胞中表达。本发明的表达盒被设计为最优选地在植物细胞内表达。DNA construct is the combination that DNA molecule is connected to each other, and this combination provides one or more expression cassettes.DNA construct is preferably can self-replicate in bacterial cell, and contains the plasmid of different restriction endonuclease sites, and the restriction endonuclease sites contained are used to import the DNA molecule that functional gene element is provided, i.e. promoter, intron, leader sequence, encoding sequence, 3 ' terminator region and other sequences.The expression cassette contained in the DNA construct comprises the necessary gene element that provides the transcription of messenger RNA, and the expression cassette can be designed to express in prokaryotic cell or eukaryotic cell.Expression cassette of the present invention is designed to express in plant cell most preferably.
在文本中,转基因“事件”是通过用异源DNA构建体转化植物细胞而得到的,即包括至少一个含有目标基因的核酸表达盒,通过转基因的方法插入到植物基因组中以产生植物群体,再生所述植物群体,和选择具有插入特定基因组位点特征的特定植株。术语“事件”是指含有异源DNA的原始转化体和该转化体的后代。术语“事件”还指原始转化体和含有异源DNA的其它品种个体之间进行有性杂交而得到的后代,即使在与回交亲本进行反复回交后,来自于原始转化体亲本的插入DNA和侧翼基因组DNA也存在于杂交后代中的同一染色体位置。术语“事件”还指来自原始转化体的DNA序列,该DNA序列包含插入DNA和与插入DNA紧密相邻的侧翼基因组序列,该DNA序列被预期转移到子代中,该子代由含有插入DNA的亲本系(例如原始转化体和其自交产生的子代)与不含有插入DNA的亲本系进行有性杂交而产生,且该子代接受了包含目标基因的插入DNA。In the text, a transgenic "event" is obtained by transforming a plant cell with a heterologous DNA construct, i.e., comprising at least one nucleic acid expression cassette containing a target gene, inserted into the plant genome by a transgenic method to produce a plant population, regenerate the plant population, and select specific plants with the characteristics of insertion at a specific genomic site. The term "event" refers to the original transformant containing the heterologous DNA and the offspring of the transformant. The term "event" also refers to the offspring obtained by sexually crossing the original transformant and individuals of other varieties containing heterologous DNA, even after repeated backcrossing with the recurrent parent, the inserted DNA and flanking genomic DNA from the original transformant parent are present in the same chromosomal position in the hybrid offspring. The term "event" also refers to a DNA sequence from the original transformant, the DNA sequence comprising the inserted DNA and the flanking genomic sequence closely adjacent to the inserted DNA, the DNA sequence is expected to be transferred to the offspring, the offspring is produced by sexually crossing the parental line containing the inserted DNA (e.g., the original transformant and the offspring produced by its self-crossing) with the parental line that does not contain the inserted DNA, and the offspring receives the inserted DNA containing the target gene.
在文本中,术语“重组”是指通常不能在自然界中发现并且因此通过人工干预产生的DNA和/或蛋白和/或生物体的形式。这种人工干预可产生重组DNA分子和/或重组植物。所述“重组DNA分子”是通过人工组合两种在其它情况下是分离的序列区段而获得的,例如通过化学合成或通过遗传工程技术操作分离的核酸区段。进行核酸操作的技术是众所周知的。In the text, the term "recombinant" refers to a form of DNA and/or protein and/or organism that is not normally found in nature and is therefore produced by human intervention. Such human intervention can produce recombinant DNA molecules and/or recombinant plants. The "recombinant DNA molecule" is obtained by artificially combining two otherwise isolated sequence segments, for example by chemical synthesis or by genetic engineering techniques to manipulate isolated nucleic acid segments. Techniques for nucleic acid manipulation are well known.
在文本中,术语“转基因体”包括任何细胞、细胞系、愈伤组织、组织、植物部分或植物,以上的基因型由于异源核酸的存在而改变,所述“转基因”包括最初被这样改变的转基因体以及由最初的转基因体通过有性杂交或无性繁殖生成的子代个体。在本发明中,术语“转基因”不包括通过常规植物育种方法获得的植物或单纯只包含有天然突变体
的植物。In this text, the term "transgenic" includes any cell, cell line, callus, tissue, plant part or plant, the genotype of which is changed due to the presence of heterologous nucleic acid, and the "transgenic" includes the original transgenic body so changed and the progeny individuals generated by the original transgenic body through sexual hybridization or asexual reproduction. In the present invention, the term "transgenic" does not include plants obtained by conventional plant breeding methods or simply containing only natural mutations. of plants.
在文本中,术语“异源的”是指自然界中第一分子通常不被发现与第二分子组合。例如,分子可以源自第一物种并插入到第二物种的基因组中。因此这种分子对于宿主是异源的并被人工引入宿主细胞的基因组中。In the text, the term "heterologous" means that a first molecule is not normally found in nature in combination with a second molecule. For example, a molecule can be derived from a first species and inserted into the genome of a second species. Such a molecule is thus heterologous to the host and is artificially introduced into the genome of the host cell.
培养对鳞翅目昆虫具有抗性且对草铵膦除草剂具有耐受性的转基因玉米事件DBN9229,通过以下步骤:首先使第一亲本玉米植物与第二亲本玉米植物有性杂交,从而产生了多样的第一代子代植株,所述第一亲本玉米植物由培育自转基因玉米事件DBN9229及其后代的玉米植物组成,该转基因玉米事件DBN9229及其后代是通过利用本发明的对鳞翅目昆虫具有抗性且对草铵膦除草剂具有耐受性的表达盒进行转化而得到的,第二亲本玉米植物缺乏对鳞翅目昆虫的抗性和/或对草铵膦除草剂具有耐受性;然后选择对鳞翅目昆虫的侵袭具有抗性和/或对草铵膦除草剂具有耐受性的子代植株;或者将第一代子代植物自交,由此产生多个第二代子代植物,用靶昆虫侵袭和/或用草铵膦处理所述子代植株,选择对昆虫具有抗性和/或对草铵膦除草剂具有耐受性的子代植株。可以培育出对鳞翅目昆虫具有抗性且对草铵膦除草剂具有耐受性的玉米植物。这些步骤可以进一步包括使鳞翅目昆虫抗性和/或草铵膦耐受性的子代植株与第二亲本玉米植物或第三亲本玉米植物进行回交,然后通过用鳞翅目昆虫侵袭、草铵膦除草剂施加或通过与性状相关的分子标记物(如包含转基因玉米事件DBN9229中插入序列的5’端和3’端鉴定出的接合位点的DNA分子)的鉴定来选择子代,从而产生对鳞翅目昆虫具有抗性且对草铵膦除草剂具有耐受性的玉米植物。The transgenic corn event DBN9229 having resistance to lepidopteran insects and tolerance to glufosinate herbicide is cultivated by the following steps: firstly, a first parent corn plant is sexually hybridized with a second parent corn plant, thereby producing a variety of first generation progeny plants, wherein the first parent corn plant is composed of corn plants cultivated from the transgenic corn event DBN9229 and its progeny, and the transgenic corn event DBN9229 and its progeny are obtained by transformation using the expression cassette of the present invention having resistance to lepidopteran insects and tolerance to glufosinate herbicide, and the second parent corn plant lacks resistance to lepidopteran insects and/or tolerance to glufosinate herbicide; then, progeny plants having resistance to attack by lepidopteran insects and/or tolerance to glufosinate herbicide are selected; or, the first generation progeny plants are self-pollinated to produce a plurality of second generation progeny plants, the progeny plants are attacked with target insects and/or treated with glufosinate, and the progeny plants having resistance to insects and/or tolerance to glufosinate herbicide are selected. Corn plants that are resistant to lepidopteran insects and tolerant to glufosinate herbicides can be cultivated. These steps can further include backcrossing the progeny plants that are resistant to lepidopteran insects and/or tolerant to glufosinate herbicides with the second parent corn plant or the third parent corn plant, and then selecting the progeny by attacking with lepidopteran insects, applying glufosinate herbicides, or by identification of molecular markers associated with the traits (such as DNA molecules comprising the 5' end and 3' end of the insertion sequence in transgenic corn event DBN9229) to produce corn plants that are resistant to lepidopteran insects and tolerant to glufosinate herbicides.
还应理解的是,两种不同的转基因植物也可以交配以产生含有两个独立的、分离式添加的外源基因的后代。适当后代的自交可以得到对两个添加的外源基因来说都是纯合子的后代植株。如前所述的对亲本植株的回交和与非转基因植物的异型杂交也是可以预期的,无性繁殖也是同样的。It should also be understood that two different transgenic plants can also be mated to produce offspring containing two independent, segregating added exogenous genes. Selfing of appropriate offspring can result in offspring plants that are homozygous for both added exogenous genes. Backcrossing of parental plants and outcrossing with non-transgenic plants as described above are also contemplated, as are asexual reproduction.
在文本中,术语“探针”是一段分离的核酸分子,其上面结合有常规的可检测标记或报告分子,例如,放射性同位素、配体、化学发光剂或酶类。这种探针与目标核酸的一条链是互补的,在本发明中,探针与来自转基因玉米事件DBN9229基因组的一条DNA链互补,不论该基因组DNA是来自转基因玉米事件DBN9229或种子还是来源于转基因玉米事件DBN9229的植物或种子或提取物。本发明的探针不仅包括脱氧核糖核酸或核糖核酸,还包括特异性地与目标DNA序列结合并可用于检测该目标DNA序列的存在的聚酰胺及其他探针材料。
In the text, the term "probe" is a separate nucleic acid molecule to which a conventional detectable label or reporter molecule, such as a radioisotope, ligand, chemiluminescent agent or enzyme is bound. Such a probe is complementary to a strand of a target nucleic acid, and in the present invention, the probe is complementary to a DNA strand from the genome of transgenic corn event DBN9229, whether the genomic DNA is from transgenic corn event DBN9229 or seeds or from plants or seeds or extracts of transgenic corn event DBN9229. The probe of the present invention includes not only deoxyribonucleic acid or ribonucleic acid, but also polyamides and other probe materials that specifically bind to a target DNA sequence and can be used to detect the presence of the target DNA sequence.
在文本中,术语“引物”是一段分离的核酸分子,其通过核酸杂交,退火结合到互补的目标DNA链上,在引物和目标DNA链之间形成杂合体,然后在聚合酶(例如DNA聚合酶)的作用下,沿目标DNA链延伸。本发明的引物对涉及其在目标核酸序列扩增中的应用,例如,通过聚合酶链式反应(PCR)或其他常规的核酸扩增方法。In the text, the term "primer" is a separate nucleic acid molecule that anneals to a complementary target DNA strand through nucleic acid hybridization, forms a hybrid between the primer and the target DNA strand, and then extends along the target DNA strand under the action of a polymerase (e.g., DNA polymerase). The primer pair of the present invention relates to its use in amplification of a target nucleic acid sequence, for example, by polymerase chain reaction (PCR) or other conventional nucleic acid amplification methods.
探针和引物的长度一般是11个多核苷酸或更多,例如是18个多核苷酸或更多,是24个多核苷酸或更多,是30个多核苷酸或更多。这种探针和引物在高度严格杂交条件下与目标序列特异性地杂交。尽管不同于目标DNA序列且对目标DNA序列保持杂交能力的探针是可以通过常规方法设计出来的,但是,优选的,本发明中的探针和引物与目标序列的连续核酸具有完全的DNA序列同一性。The length of probes and primers is generally 11 polynucleotides or more, for example 18 polynucleotides or more, 24 polynucleotides or more, 30 polynucleotides or more. Such probes and primers hybridize specifically with the target sequence under highly stringent hybridization conditions. Although probes that are different from the target DNA sequence and that maintain hybridization ability to the target DNA sequence can be designed by conventional methods, preferably, the probes and primers of the present invention have complete DNA sequence identity with the continuous nucleic acids of the target sequence.
基于本发明的侧翼基因组DNA和插入序列的引物和探针可以通过常规方法确定,例如,通过从来源于转基因玉米事件DBN9229的植物材料中分离相应的DNA分子,并确定该DNA分子的核酸序列。所述DNA分子包含转基因插入序列和玉米基因组侧翼序列,所述DNA分子的片段可以用作引物或探针。Primers and probes based on the flanking genomic DNA and insertion sequences of the present invention can be determined by conventional methods, for example, by isolating the corresponding DNA molecule from plant material derived from transgenic corn event DBN9229 and determining the nucleic acid sequence of the DNA molecule. The DNA molecule comprises the transgenic insertion sequence and the corn genomic flanking sequence, and fragments of the DNA molecule can be used as primers or probes.
本发明的核酸探针和引物在严格条件下与目标DNA序列杂交。任何常规的核酸杂交或扩增方法都可以用于鉴定样品中来源于转基因玉米事件DBN9229的DNA的存在。核酸分子或其片段在一定情况下能够与其他核酸分子进行特异性杂交。如本发明使用的,如果两个核酸分子能形成反平行的双链核酸结构,就可以说这两个核酸分子彼此间能够进行特异性杂交。如果两个核酸分子显示出完全的互补性,则称其中一个核酸分子是另一个核酸分子的“互补物”。如本发明使用的,当一个核酸分子的每一个核苷酸都与另一个核酸分子的对应核苷酸互补时,则称这两个核酸分子显示出“完全互补性”。如果两个核酸分子能够以足够的稳定性相互杂交从而使它们在至少常规的“低度严格”条件下退火且彼此结合,则称这两个核酸分子为“最低程度互补”。类似地,如果两个核酸分子能够以足够的稳定性相互杂交从而使它们在常规的“高度严格”条件下退火且彼此结合,则称这两个核酸分子具有“互补性”。从完全互补性中偏离是可以允许的,只要这种偏离不完全阻止两个分子形成双链结构。为了使一个核酸分子能够作为引物或探针,仅需保证其在序列上具有充分的互补性,以使得在所采用的特定溶剂和盐浓度下能形成稳定的双链结构。The nucleic acid probe and primer of the present invention hybridize with the target DNA sequence under stringent conditions. Any conventional nucleic acid hybridization or amplification method can be used to identify the presence of DNA derived from transgenic corn event DBN9229 in a sample. Nucleic acid molecules or fragments thereof can be specifically hybridized with other nucleic acid molecules under certain circumstances. As used in the present invention, if two nucleic acid molecules can form an antiparallel double-stranded nucleic acid structure, it can be said that the two nucleic acid molecules can specifically hybridize with each other. If two nucleic acid molecules show complete complementarity, then one of the nucleic acid molecules is said to be the "complement" of another nucleic acid molecule. As used in the present invention, when each nucleotide of a nucleic acid molecule is complementary to the corresponding nucleotide of another nucleic acid molecule, then the two nucleic acid molecules are said to show "complete complementarity". If two nucleic acid molecules can hybridize with sufficient stability so that they anneal and bind to each other under at least conventional "low stringency" conditions, then the two nucleic acid molecules are said to be "minimally complementary". Similarly, if two nucleic acid molecules can hybridize with sufficient stability so that they anneal and bind to each other under conventional "high stringency" conditions, then the two nucleic acid molecules are said to have "complementarity". Deviations from complete complementarity are permissible as long as such deviations do not completely prevent the two molecules from forming a double-stranded structure. In order for a nucleic acid molecule to serve as a primer or probe, it is only necessary to ensure that it has sufficient complementarity in sequence to form a stable double-stranded structure under the specific solvent and salt concentration used.
如本发明使用的,基本同源的序列是一段核酸分子,该核酸分子在高度严格条件下能够和相匹配的另一段核酸分子的互补链发生特异性杂交。促进DNA杂交的适合的严格条件,例如,大约在45℃条件下用6.0×氯化钠/柠檬酸钠(SSC)处理,然后在50℃条件
下用2.0×SSC洗涤,这些条件对本领域技术人员是公知的。例如,在洗涤步骤中的盐浓度可以选自低度严格条件的约2.0×SSC、50℃到高度严格条件的约0.2×SSC、50℃。此外,洗涤步骤中的温度条件可以从低度严格条件的室温约22℃,升高到高度严格条件的约65℃。温度条件和盐浓度可以都发生改变,也可以其中一个保持不变而另一个变量发生改变。优选地,本发明的一个核酸分子可以在中度严格条件下,例如在约2.0×SSC和约65℃下与SEQ ID NO:1、SEQ ID NO:2、SEQ ID NO:3、SEQ ID NO:4、SEQ ID NO:5、SEQ ID NO:6和SEQ ID NO:7中一个或多个核酸分子或其互补序列,或者上述序列的任一片段发生特异性杂交。更优选地,本发明的一个核酸分子在高度严格条件下与SEQ ID NO:1、SEQ ID NO:2、SEQ ID NO:3、SEQ ID NO:4、SEQ ID NO:5、SEQ ID NO:6和SEQ ID NO:7中一个或多个核酸分子或其互补序列,或者上述序列的任一片段发生特异性杂交。本发明中,优选的标记物核酸分子具有SEQ ID NO:1、SEQ ID NO:2、SEQ ID NO:6或SEQ ID NO:7或其互补序列,或者上述序列的任一片段。本发明另一优选的标记物核酸分子与SEQ ID NO:1、SEQ ID NO:2、SEQ ID NO:6或SEQ ID NO:7或其互补序列,或者上述序列的任一片段具有80%到100%或90%到100%的序列同一性。SEQ ID NO:1、SEQ ID NO:2、SEQ ID NO:6和SEQ ID NO:7可以用作植物育种方法中的标记物以鉴定遗传杂交的后代。探针与目标DNA分子的杂交可以通过任何一种为本领域技术人员所熟知的方法进行检测,这些方法包括但不限于,荧光标记、放射性标记、抗体类标记和化学发光标记。As used in the present invention, a substantially homologous sequence is a nucleic acid molecule that can specifically hybridize with the complementary strand of another matching nucleic acid molecule under highly stringent conditions. Suitable stringent conditions for promoting DNA hybridization include, for example, treatment with 6.0× sodium chloride/sodium citrate (SSC) at about 45°C and then at 50°C. The conditions are well known to those skilled in the art. For example, the salt concentration in the washing step can be selected from about 2.0×SSC, 50°C for low stringency conditions to about 0.2×SSC, 50°C for high stringency conditions. In addition, the temperature conditions in the washing step can be increased from about 22°C for low stringency conditions to about 65°C for high stringency conditions. Both the temperature conditions and the salt concentration can be changed, or one of them can remain unchanged while the other variable is changed. Preferably, a nucleic acid molecule of the present invention can specifically hybridize with one or more nucleic acid molecules or their complementary sequences in SEQ ID NO:1, SEQ ID NO:2, SEQ ID NO:3, SEQ ID NO:4, SEQ ID NO:5, SEQ ID NO:6 and SEQ ID NO:7, or any fragment of the above sequences under moderate stringency conditions, such as at about 2.0×SSC and about 65°C. More preferably, a nucleic acid molecule of the present invention specifically hybridizes with one or more nucleic acid molecules of SEQ ID NO:1, SEQ ID NO:2, SEQ ID NO:3, SEQ ID NO:4, SEQ ID NO:5, SEQ ID NO:6 and SEQ ID NO:7 or their complementary sequences, or any fragments of the above sequences under highly stringent conditions. In the present invention, a preferred marker nucleic acid molecule has SEQ ID NO:1, SEQ ID NO:2, SEQ ID NO:6 or SEQ ID NO:7 or their complementary sequences, or any fragments of the above sequences. Another preferred marker nucleic acid molecule of the present invention has 80% to 100% or 90% to 100% sequence identity with SEQ ID NO:1, SEQ ID NO:2, SEQ ID NO:6 or SEQ ID NO:7 or their complementary sequences, or any fragments of the above sequences. SEQ ID NO:1, SEQ ID NO:2, SEQ ID NO:6 and SEQ ID NO:7 can be used as markers in plant breeding methods to identify offspring of genetic crosses. The hybridization of the probe to the target DNA molecule can be detected by any method known to those skilled in the art, including but not limited to fluorescent labeling, radioactive labeling, antibody labeling, and chemiluminescent labeling.
关于使用特定的扩增引物对目标核酸序列进行的扩增(例如,通过PCR),“严格条件”指的是在DNA热扩增反应中仅允许引物对目标核酸序列发生杂交的条件,具有与目标核酸序列相应的野生型序列(或其互补序列)的引物,能够与所述目标核酸序列结合,并且优选产生唯一的扩增产物,扩增产物即扩增子。With respect to amplification of a target nucleic acid sequence using specific amplification primers (e.g., by PCR), "stringent conditions" refer to conditions that only allow the primers to hybridize to the target nucleic acid sequence in a DNA thermal amplification reaction, and primers having a wild-type sequence (or its complementary sequence) corresponding to the target nucleic acid sequence are able to bind to the target nucleic acid sequence and preferably produce a unique amplification product, i.e., an amplicon.
在文本中,术语“特异性结合(目标序列)”是指在严格杂交条件下探针或引物仅与包含目标序列的样品中的目标序列发生杂交。As used herein, the term "specifically binds to (a target sequence)" means that under stringent hybridization conditions, the probe or primer hybridizes only to the target sequence in a sample containing the target sequence.
在文本中,术语“扩增子”是指作为核酸模板一部分的目标核酸序列的核酸扩增产物。例如,为了确定玉米植物是否由含有本发明转基因玉米事件DBN9229通过有性杂交方式产生,或采集自田地的玉米样品是否包含转基因玉米事件DBN9229,或玉米提取物,例如粗粉、面或油是否包含转基因玉米事件DBN9229,从玉米植物组织样品或提取物提取的DNA可以通过使用引物对的核酸扩增方法以产生对于转基因玉米事件DBN9229的DNA的存在是诊断性的扩增子。所述引物对包括一个来源于植物基因组中
与插入的外源DNA插入位点相邻的侧翼序列的第一引物,和来源于插入的外源DNA的第二引物。扩增子具有一定长度和序列,所述序列对所述转基因玉米事件DBN9229也是诊断性的。扩增子的长度范围可以是引物对的结合长度加上一个核苷酸碱基对,优选加上约50个核苷酸碱基对,更优选加上约250个核苷酸碱基对,最优选加上约450个核苷酸碱基对或更多。As used herein, the term "amplicon" refers to the product of nucleic acid amplification of a target nucleic acid sequence that is part of a nucleic acid template. For example, to determine whether a corn plant was produced by sexual hybridization containing the transgenic corn event DBN9229 of the present invention, or whether a corn sample collected from a field contains transgenic corn event DBN9229, or whether a corn extract, such as meal, flour, or oil, contains transgenic corn event DBN9229, DNA extracted from a corn plant tissue sample or extract can be subjected to a nucleic acid amplification method using a primer pair to produce an amplicon that is diagnostic for the presence of DNA of the transgenic corn event DBN9229. The primer pair includes a primer pair derived from a plant genome. A first primer for a flanking sequence adjacent to the inserted exogenous DNA insertion site, and a second primer derived from the inserted exogenous DNA. The amplicon has a length and sequence that is also diagnostic for the transgenic corn event DBN9229. The amplicon can range in length from the combined length of the primer pair plus one nucleotide base pair, preferably plus about 50 nucleotide base pairs, more preferably plus about 250 nucleotide base pairs, and most preferably plus about 450 nucleotide base pairs or more.
可选的,引物对可以来源于插入DNA两侧的侧翼基因组序列,以产生包括整个插入核苷酸序列的扩增子。来源于植物基因组序列的引物对中的一个可以位于距插入DNA序列一定距离处,该距离的范围可以为一个核苷酸碱基对到约两万个核苷酸碱基对。术语“扩增子”的使用特别排除了在DNA热扩增反应中形成的引物二聚体。Alternatively, the primer pairs can be derived from flanking genomic sequences on both sides of the inserted DNA to produce an amplicon comprising the entire inserted nucleotide sequence. One of the primer pairs derived from the plant genomic sequence can be located at a distance from the inserted DNA sequence, the distance ranging from one nucleotide base pair to about 20,000 nucleotide base pairs. The use of the term "amplicon" specifically excludes primer dimers formed in a DNA thermal amplification reaction.
核酸扩增反应可以通过本领域已知的任何一种核酸扩增反应方法实现,包括聚合酶链式反应(PCR)。各种核酸扩增方法已是本领域技术人员所熟知的。PCR扩增方法已经发展到可扩增多达22kb的基因组DNA和多达42kb的噬菌体DNA。这些方法以及本领域的其他DNA扩增方法可以用于本发明。插入的外源DNA序列和来自转基因玉米事件DBN9229的侧翼DNA序列可以通过利用所提供的引物序列对转基因玉米事件DBN9229的基因组进行扩增,扩增后对PCR扩增子或克隆的DNA进行标准的DNA测序。Nucleic acid amplification reaction can be achieved by any nucleic acid amplification reaction method known in the art, including polymerase chain reaction (PCR). Various nucleic acid amplification methods are well known to those skilled in the art. PCR amplification methods have been developed to amplify up to 22kb of genomic DNA and up to 42kb of phage DNA. These methods and other DNA amplification methods in the art can be used in the present invention. The inserted exogenous DNA sequence and the flanking DNA sequence from the transgenic corn event DBN9229 can be amplified by utilizing the provided primer sequences to amplify the genome of the transgenic corn event DBN9229, and after amplification, the PCR amplicon or cloned DNA is subjected to standard DNA sequencing.
基于DNA扩增方法的DNA检测试剂盒含有用作引物的DNA分子,它们在适当的反应条件下特异性杂交到目标DNA上并扩增诊断性扩增子。试剂盒可提供基于琼脂糖凝胶的检测方法或者现有技术已知的检测诊断性扩增子的许多方法。含有与SEQ ID NO:3或SEQ ID NO:4的玉米基因组的任何部分同源或互补的、以及与SEQ ID NO:5的转基因插入区的任何部分同源或互补的DNA引物的试剂盒是本发明所提供的。特别地鉴别在DNA扩增方法中有用的引物对是SEQ ID NO:8和SEQ ID NO:9,其扩增与转基因玉米事件DBN9229的5’转基因/基因组区的一部分同源的诊断性扩增子,其中扩增子包括SEQ ID NO:1。用作DNA引物的其它DNA分子可选自SEQ ID NO:5。A DNA detection kit based on a DNA amplification method contains DNA molecules used as primers, which specifically hybridize to the target DNA under appropriate reaction conditions and amplify diagnostic amplicons. The kit can provide an agarose gel-based detection method or many methods for detecting diagnostic amplicons known in the prior art. A kit containing DNA primers homologous or complementary to any part of the corn genome of SEQ ID NO:3 or SEQ ID NO:4, and homologous or complementary to any part of the transgenic insertion region of SEQ ID NO:5 is provided by the present invention. The primer pair particularly identified as useful in the DNA amplification method is SEQ ID NO:8 and SEQ ID NO:9, which amplify a diagnostic amplicon homologous to a portion of the 5' transgenic/genomic region of the transgenic corn event DBN9229, wherein the amplicon includes SEQ ID NO:1. Other DNA molecules used as DNA primers can be selected from SEQ ID NO:5.
这些方法所产生的扩增子可以通过多种技术进行检测。其中一个方法是遗传点分析(Genetic Bit Analysis),该方法设计了一个跨越插入DNA序列和相邻的侧翼基因组DNA序列的DNA寡核苷酸链。将该寡核苷酸链固定在一个微孔板的微孔内,在对目标区域进行PCR扩增后(在插入序列内和相邻的侧翼基因组序列中各使用一个引物),单链PCR产物可与固定的寡核苷酸链进行杂交,并且作为单碱基延伸反应的模板,该延伸反应使用了DNA聚合酶和为下一个预期的碱基特定标记的ddNTPs。可以通过荧光或
ELISA类方法得到结果。信号代表了插入/侧翼序列的存在,其说明扩增、杂交和单碱基延伸反应是成功的。The amplicons generated by these methods can be detected by a variety of techniques. One such method is Genetic Bit Analysis, in which a DNA oligonucleotide strand is designed that spans the insert DNA sequence and the adjacent flanking genomic DNA sequence. The oligonucleotide strand is immobilized in a microwell of a microplate, and after PCR amplification of the target region (using one primer each in the insert sequence and the adjacent flanking genomic sequence), the single-stranded PCR product can be hybridized to the immobilized oligonucleotide strand and used as a template for a single base extension reaction using a DNA polymerase and ddNTPs specifically labeled for the next expected base. Results are obtained using an ELISA-type method. Signals represent the presence of the insert/flanking sequence, indicating that amplification, hybridization, and single base extension reactions were successful.
另一种方法是焦磷酸测序技术(Pyrosequencing)。该方法设计了一个跨越插入DNA序列和相邻的基因组DNA结合部位的寡核苷酸链。将该寡核苷酸链和目标区域的单链PCR产物(在插入序列内和相邻的侧翼基因组序列中各使用一个引物)进行杂交,然后和DNA聚合酶、ATP、硫酰基酶、荧光素酶、三磷酸腺苷双磷酸酶、腺苷-5’-磷硫酸盐和萤光素一起进行温育。分别加入dNTPs,测量产生的光信号。光信号代表了插入/侧翼序列的存在,其说明扩增、杂交、和单碱基或多碱基延伸反应是成功的。Another method is pyrosequencing. This method designs an oligonucleotide chain that spans the inserted DNA sequence and the adjacent genomic DNA binding site. The oligonucleotide chain is hybridized with the single-stranded PCR product of the target region (one primer is used in the inserted sequence and one primer is used in the adjacent flanking genomic sequence), and then incubated with DNA polymerase, ATP, sulfhydryl enzyme, luciferase, apyrase, adenosine-5'-phosphosulfate and luciferin. dNTPs are added separately and the generated light signals are measured. The light signal represents the presence of the inserted/flanking sequence, which indicates that the amplification, hybridization, and single-base or multi-base extension reaction are successful.
Chen等(基因组研究(Genome Res.)9:492-498,1999)描述的荧光偏振现象也是可以用于检测本发明扩增子的一种方法。使用这种方法需要设计一个跨越插入DNA序列和相邻的基因组DNA结合部位的寡核苷酸链。将该寡核苷酸链和目标区域的单链PCR产物(在插入序列内和相邻的侧翼基因组序列中各使用一个引物)进行杂交,然后和DNA聚合酶以及一种荧光标记的ddNTP一起进行温育。单碱基延伸会导致插入ddNTP。这种插入可以利用荧光仪测量其偏振的改变。偏振的改变代表了插入/侧翼序列的存在,其说明扩增、杂交和单碱基延伸反应是成功的。The fluorescence polarization phenomenon described by Chen et al. (Genome Res. 9:492-498, 1999) is also a method that can be used to detect the amplicon of the present invention. Using this method requires designing an oligonucleotide chain that spans the inserted DNA sequence and the adjacent genomic DNA binding site. The oligonucleotide chain is hybridized with the single-stranded PCR product of the target region (one primer is used in the inserted sequence and one primer is used in the adjacent flanking genomic sequence), and then incubated with a DNA polymerase and a fluorescently labeled ddNTP. Single-base extension will result in the insertion of the ddNTP. This insertion can be measured by a change in its polarization using a fluorimeter. The change in polarization represents the presence of the inserted/flanking sequence, which indicates that the amplification, hybridization and single-base extension reactions are successful.
Taqman被描述为一种检测和定量分析DNA序列存在的方法,该方法在制造商所提供的使用说明中有详细介绍。现简要说明如下,设计一个跨越插入DNA序列和相邻的基因组侧翼结合部位的FRET寡核苷酸探针。该FRET探针和PCR引物(在插入序列内和相邻的侧翼基因组序列中各使用一个引物)在热稳定聚合酶和dNTPs存在下进行循环反应。FRET探针的杂交导致FRET探针上荧光部分和淬灭部分的分裂以及荧光部分的释放。荧光信号的产生代表了插入/侧翼序列的存在,其说明扩增和杂交是成功的。Taqman is described as a method for detecting and quantifying the presence of a DNA sequence and is described in detail in the instructions provided by the manufacturer. As briefly described below, a FRET oligonucleotide probe is designed that spans the insert DNA sequence and the adjacent genomic flanking binding site. The FRET probe and PCR primers (one primer each in the insert sequence and the adjacent flanking genomic sequence) are cycled in the presence of a thermostable polymerase and dNTPs. Hybridization of the FRET probe results in the cleavage of the fluorescent and quenching moieties on the FRET probe and the release of the fluorescent moiety. The generation of a fluorescent signal represents the presence of the insert/flanking sequence, which indicates that amplification and hybridization were successful.
基于杂交原理,用于检测来源于转基因玉米事件DBN9229的植物材料的适合技术还可以包括Southern印迹杂交(Southern blot)、Northern印迹杂交(Northern blot)和原位杂交(in situ hybridization)。特别地,所述适合技术包括温育探针和样品,洗涤以移除未结合的探针和检测探针是否已经杂交。所述的检测方法取决于探针所附标记的类型,例如,通过X光片曝光和显影可以检测放射性标记的探针,或通过底物转化实现颜色变化可以检测酶标记的探针。Based on the principle of hybridization, suitable techniques for detecting plant materials derived from transgenic corn event DBN9229 may also include Southern blot hybridization, Northern blot hybridization, and in situ hybridization. In particular, the suitable techniques include incubating the probe and sample, washing to remove unbound probes, and detecting whether the probe has hybridized. The detection method depends on the type of label attached to the probe, for example, radiolabeled probes can be detected by X-ray exposure and development, or enzyme-labeled probes can be detected by color change through substrate conversion.
Tyangi等(自然生物技术(Nature Biotech.)14:303-308,1996)介绍了分子标记在序列检测中的应用。简要说明如下,设计一个跨越插入DNA序列和相邻的基因组侧翼结合部位的FRET寡核苷酸探针。该FRET探针的独特结构导致其含有二级结构,该二
级结构能够在近距离内保持荧光部分和淬灭部分。该FRET探针和PCR引物(在插入序列内和相邻的侧翼基因组序列中各使用一个引物)在热稳定聚合酶和dNTPs存在下进行循环反应。经过成功的PCR扩增,FRET探针和目标序列的杂交导致探针二级结构的丧失,从而使荧光部分和淬灭部分在空间上发生分离,产生荧光信号。荧光信号的产生代表了插入/侧翼序列的存在,其说明扩增和杂交是成功的。Tyangi et al. (Nature Biotech. 14:303-308, 1996) introduced the application of molecular markers in sequence detection. A brief description is as follows: a FRET oligonucleotide probe is designed that spans the inserted DNA sequence and the adjacent genomic flanking binding site. The unique structure of the FRET probe results in it containing a secondary structure. The secondary structure can keep the fluorescent part and the quenching part in close proximity. The FRET probe and PCR primers (one primer each in the insert sequence and the adjacent flanking genomic sequence) are cyclically reacted in the presence of a thermostable polymerase and dNTPs. After successful PCR amplification, hybridization of the FRET probe and the target sequence results in the loss of the probe secondary structure, thereby separating the fluorescent part and the quenching part in space and generating a fluorescent signal. The generation of the fluorescent signal represents the presence of the insert/flanking sequence, which indicates that the amplification and hybridization are successful.
其他描述的方法,例如微流体(microfluidics)提供了分离和扩增DNA样品的方法和设备。光染料用于检测和测定特定的DNA分子。包含用于检测DNA分子的电子传感器或结合特定DNA分子的纳珠并因而可被检测的纳试管(nanotube)设备对于检测本发明的DNA分子是有用的。Other described methods, such as microfluidics, provide methods and devices for separating and amplifying DNA samples. Optical dyes are used to detect and measure specific DNA molecules. Nanotube devices containing electronic sensors for detecting DNA molecules or nanobeads that bind specific DNA molecules and can thus be detected are useful for detecting DNA molecules of the present invention.
可以使用本发明所述的组合物和DNA检测领域描述的或已知的方法来开发DNA检测试剂盒。所述试剂盒有利于鉴定样品中是否存在转基因玉米事件DBN9229的DNA,还可以用于培育含有转基因玉米事件DBN9229的DNA的玉米植物。所述试剂盒可以含有DNA引物或探针,其同源于或互补于SEQ ID NO:1、2、3、4或5的至少一部分,或含有其它DNA引物或探针,其同源于或互补于DNA的转基因遗传元件中所含的DNA,这些DNA序列可以用于DNA扩增反应,或作为DNA杂交方法中的探针。在玉米基因组中含有的以及在图1和表1中说明的转基因插入序列与玉米基因组结合部位的DNA结构包含:位于转基因插入序列5’末端的玉米植物DBN9229侧翼基因组区域;来自农杆菌的左侧边界区域(LB)的一部分插入序列;第一个表达盒由含有花椰菜花叶病毒35S启动子(pr35S),可操作地连接到链霉菌的草铵膦耐受性的膦丝菌素N-乙酰基转移酶(cPAT)上,并可操作地连接到花椰菜花叶病毒35S终止子(t35S)上而组成;第二个表达盒由来源于水稻的肌动蛋白1(Actin)启动子,可操作地连接到玉米Rubisco基因叶绿体转运肽基因(spZmCTP2)上,可操作地连接到苏云金芽孢杆菌的昆虫抗性的Cry2Ab2蛋白(cCry2Ab2)上,并可操作地连接到In2-1基因转录终止子(tIn2)上而组成;第三个表达盒由含有玉米泛素基因1启动子(prZmUbi1),可操作地连接到苏云金芽孢杆菌的昆虫抗性的Cry1Fa2蛋白(cCry1Fa2)上,可操作地连接到来自根癌农杆菌A6株pTiA6质粒甘露碱合酶的转录终止子(tORF25PolyA)上,并可操作地连接到核骨架结合序列(eRB7)上而组成;来自农杆菌的右侧边界区域(RB)的一部分插入序列,以及位于转基因插入序列3’末端的玉米植物DBN9229侧翼基因组区域(SEQ ID NO:5)。在DNA扩增方法中,作为引物的DNA分子可以是来源于转基因玉米事件DBN9229中转基因插入序列的任何部分,也可以是来源于转基因玉米事件DBN9229的
玉米基因组侧翼DNA序列的任何部分。A DNA detection kit can be developed using the compositions of the present invention and methods described or known in the art of DNA detection. The kit is useful for identifying the presence of DNA of transgenic corn event DBN9229 in a sample, and can also be used to grow corn plants containing DNA of transgenic corn event DBN9229. The kit can contain DNA primers or probes that are homologous to or complementary to at least a portion of SEQ ID NO: 1, 2, 3, 4, or 5, or other DNA primers or probes that are homologous to or complementary to DNA contained in a transgenic genetic element of the DNA, and these DNA sequences can be used in DNA amplification reactions, or as probes in DNA hybridization methods. The DNA structure of the transgenic insertion sequence and the junction site of the corn genome contained in the corn genome and illustrated in Figure 1 and Table 1 comprises: the flanking genomic region of the corn plant DBN9229 located at the 5' end of the transgenic insertion sequence; a portion of the insertion sequence from the left border region (LB) of Agrobacterium; the first expression cassette is composed of a cauliflower mosaic virus 35S promoter (pr35S), operably linked to the glufosinate-tolerant phosphinothricin N-acetyltransferase (cPAT) of Streptomyces, and operably linked to the cauliflower mosaic virus 35S terminator (t35S); the second expression cassette is composed of an actin 1 (Actin) promoter from rice, operably linked to the maize Rubisco gene chloroplast transit peptide gene (spZmCTP2), and operably linked to the cauliflower mosaic virus 35S terminator (t35S). The first expression cassette is composed of a Cry2Ab2 protein (cCry2Ab2) of insect resistance of Bacillus thuringiensis, and is operably connected to the In2-1 gene transcription terminator (tIn2); the third expression cassette is composed of a maize ubiquitin gene 1 promoter (prZmUbi1), operably connected to the Cry1Fa2 protein (cCry1Fa2) of insect resistance of Bacillus thuringiensis, operably connected to the transcription terminator (tORF25PolyA) of mannopine synthase from the pTiA6 plasmid of Agrobacterium tumefaciens A6 strain, and operably connected to the nuclear skeleton binding sequence (eRB7); a part of the insertion sequence from the right border region (RB) of Agrobacterium, and the flanking genomic region of the maize plant DBN9229 located at the 3' end of the transgenic insertion sequence (SEQ ID NO: 5). In the DNA amplification method, the DNA molecule used as a primer can be any part of the transgenic insertion sequence derived from the transgenic maize event DBN9229, or it can be derived from the transgenic maize event DBN9229. Any portion of the DNA sequence flanking the maize genome.
转基因玉米事件DBN9229可以与其他转基因玉米品种组合,例如除草剂(如草甘膦、麦草畏等)耐受性的转基因玉米品种,或携带其他抗虫基因的转基因玉米品种。所有这些不同转基因事件的各种组合,与本发明的转基因玉米事件DBN9229一起育种,可以提供抗多种虫害并抗多种除草剂的改良杂种转基因玉米品种。这些品种相比于非转基因品种和单性状的转基因品种可以表现出产量提升等更优异的特征。Transgenic corn event DBN9229 can be combined with other transgenic corn varieties, such as transgenic corn varieties with tolerance to herbicides (such as glyphosate, dicamba, etc.), or transgenic corn varieties carrying other insect-resistant genes. Various combinations of all these different transgenic events, bred together with the transgenic corn event DBN9229 of the present invention, can provide improved hybrid transgenic corn varieties that are resistant to multiple insect pests and multiple herbicides. These varieties can show more excellent characteristics such as yield improvement compared to non-transgenic varieties and single-trait transgenic varieties.
本发明转基因玉米事件DBN9229是对鳞翅目害虫的摄食损伤有抗性的,并且耐受含草铵膦的农业除草剂的植物毒性作用。玉米植物DBN9229表达来自苏云金芽孢杆菌的Cry2Ab2蛋白和Cry1Fa2蛋白,其提供了对鳞翅目害虫(如小地老虎、东方黏虫)摄食损伤的抗性,并表达来自链霉菌的草铵膦抗性的膦丝菌素N-乙酰基转移酶(PAT)蛋白,其赋予植物对草铵膦的耐受性。玉米植物DBN9229具有如下优点:1)免受由于鳞翅目害虫(如小地老虎、东方黏虫、棉铃虫、草地贪夜蛾等)造成的经济损失,小地老虎、东方黏虫、棉铃虫、草地贪夜蛾等是玉米种植区的主要害虫;2)施加含草铵膦的农业除草剂给玉米作物用于广谱杂草控制的能力;3)玉米产量没有降低。此外,编码昆虫抗性和草铵膦耐受性性状的转基因连锁在同一DNA区段上,并且存在于转基因玉米事件DBN9229基因组的单一基因座上,这一点提供了增强的育种效率并使得能够用分子标记来追踪繁殖群体及其子代中的转基因插入片段。同时本发明检测方法中SEQ ID NO:1或其互补序列、SEQ ID NO:2或其互补序列、SEQ ID NO:3或其互补序列、SEQ ID NO:4或其互补序列、SEQ ID NO:6或其互补序列、或者SEQ ID NO:7或其互补序列可以作为DNA引物或探针以产生诊断为转基因玉米事件DBN9229或其后代的扩增产物,且可以快速、准确、稳定的鉴定出来源于转基因玉米事件DBN9229的植物材料的存在。The transgenic corn event DBN9229 of the present invention is resistant to feeding damage by lepidopteran pests and tolerates the phytotoxic effects of agricultural herbicides containing glufosinate. The corn plant DBN9229 expresses Cry2Ab2 protein and Cry1Fa2 protein from Bacillus thuringiensis, which provide resistance to feeding damage by lepidopteran pests (such as small cutworms and oriental armyworms), and expresses glufosinate-resistant phosphinothricin N-acetyltransferase (PAT) protein from Streptomyces, which confers tolerance to glufosinate. The corn plant DBN9229 has the following advantages: 1) free from economic losses caused by lepidopteran pests (such as small cutworms, oriental armyworms, cotton bollworms, fall armyworms, etc.), which are major pests in corn-growing areas; 2) the ability to apply agricultural herbicides containing glufosinate to corn crops for broad-spectrum weed control; 3) corn yield is not reduced. In addition, the transgenes encoding insect resistance and glufosinate tolerance traits are linked to the same DNA segment and are present on a single locus in the genome of transgenic corn event DBN9229, which provides enhanced breeding efficiency and enables the use of molecular markers to track transgenic inserts in breeding populations and their progeny. At the same time, SEQ ID NO: 1 or its complementary sequence, SEQ ID NO: 2 or its complementary sequence, SEQ ID NO: 3 or its complementary sequence, SEQ ID NO: 4 or its complementary sequence, SEQ ID NO: 6 or its complementary sequence, or SEQ ID NO: 7 or its complementary sequence in the detection method of the present invention can be used as a DNA primer or probe to produce an amplification product diagnosed as transgenic corn event DBN9229 or its progeny, and can quickly, accurately and stably identify the presence of plant materials derived from transgenic corn event DBN9229.
发明的有益效果Advantageous Effects of the Invention
本申请通过用外源DNA(即含有目的基因的核酸构建体)转化玉米植物细胞,并将其插入了玉米基因组的特定位置,产生的转基因玉米事件DBN9229的玉米植物或其部分、种子、细胞或后代能够稳定且高表达具有昆虫抗性的蛋白和对草铵膦除草剂具有抗性的蛋白,并且相应性状还能够稳定遗传。The present application transforms corn plant cells with exogenous DNA (i.e., a nucleic acid construct containing a target gene) and inserts it into a specific position of the corn genome. The corn plants or parts, seeds, cells or progeny of the transgenic corn event DBN9229 produced can stably and highly express proteins with insect resistance and proteins with resistance to glufosinate herbicides, and the corresponding traits can also be stably inherited.
进一步的,通过实验证实了本申请所提供的核酸分子以及包含其的玉米植物或其部分、种子、细胞或后代具有良好的昆虫抗性(特别的,抗虫测定中昆虫死亡率达到了100%,显著降低了玉米植株的被害级别)以及草铵膦除草剂耐受性(特别的,施用草铵
膦除草剂后的玉米植株营养期损伤几乎为0)。并且,将玉米植物或其部分、种子、细胞或后代与其他具有抗性的玉米植株杂交,可进一步减少实际生产中要求的抗虫庇护所的比例,并提高植株产量。Furthermore, experiments have confirmed that the nucleic acid molecules provided in the present application and the corn plants or parts, seeds, cells or progeny thereof have good insect resistance (particularly, the insect mortality rate in the insect resistance test reached 100%, significantly reducing the damage level of the corn plants) and glufosinate herbicide tolerance (particularly, the application of glufosinate The damage of corn plants during the vegetative period after phosphine herbicide treatment is almost zero). In addition, hybridizing corn plants or their parts, seeds, cells or progeny with other resistant corn plants can further reduce the proportion of insect-resistant refuges required in actual production and increase plant yield.
因此,本申请的核酸分子以及包含其的玉米植物或其部分、种子、细胞或后代在玉米的种植和育种中具有较大的应用潜能。Therefore, the nucleic acid molecules of the present application and the corn plants or parts, seeds, cells or progeny thereof comprising the same have great application potential in corn planting and breeding.
下面将结合附图和实施例对本发明的实施方案进行详细描述,但是本领域技术人员将理解,下列附图和实施例仅用于说明本发明,而不是对本发明的范围的限定。根据附图和优选实施方案的下列详细描述,本发明的各种目的和有利方面对于本领域技术人员来说将变得显然。Embodiments of the present invention will be described in detail below in conjunction with the accompanying drawings and examples, but it will be appreciated by those skilled in the art that the following drawings and examples are only used to illustrate the present invention, rather than to limit the scope of the present invention. Various objects and advantages of the present invention will become apparent to those skilled in the art based on the following detailed description of the accompanying drawings and preferred embodiments.
图1为本发明用于检测玉米植物DBN9229的核酸序列及其检测方法的转基因插入序列与玉米基因组接合部位的结构示意图,以及用于检测玉米植物DBN9229的核酸序列相对位置的示意图(相对位置示意图参考B73 RefGen v4)。从左侧开始依次为5’玉米基因组,LB(bNLB),插入的第三个表达盒所包含的多个元件(t35S,cPAT和pr35S),插入的第二个表达盒所包含的多个元件(prOsAct1,spZmCTP2,cCry2Ab2和tIn2),插入的第一个表达盒所包含的多个元件(prZmUbi1,cCry1Fa2,tORF25PolyA和RB7),RB(bNRB),3’玉米基因组。Fig. 1 is a schematic diagram of the structure of the transgenic insertion sequence and the junction of the corn genome for detecting the nucleic acid sequence of corn plant DBN9229 and the detection method thereof of the present invention, as well as a schematic diagram of the relative position of the nucleic acid sequence for detecting corn plant DBN9229 (refer to B73 RefGen v4 for the relative position schematic diagram). From the left, it is the 5' corn genome, LB (bNLB), multiple elements contained in the third expression cassette inserted (t35S, cPAT and pr35S), multiple elements contained in the second expression cassette inserted (prOsAct1, spZmCTP2, cCry2Ab2 and tIn2), multiple elements contained in the first expression cassette inserted (prZmUbi1, cCry1Fa2, tORF25PolyA and RB7), RB (bNRB), and 3' corn genome.
图2为本发明用于检测玉米植物DBN9229的核酸序列及其检测方法的重组表达载体DBN11815的结构示意图。FIG. 2 is a schematic diagram of the structure of the recombinant expression vector DBN11815 for detecting the nucleic acid sequence of corn plant DBN9229 and the detection method thereof according to the present invention.
图3为本发明用于检测玉米植物DBN9229的核酸序列及其检测方法的转基因玉米事件DBN9229接种草地贪夜蛾、东方黏虫和亚洲玉米螟的离体效果图。3 is an in vitro effect diagram of the transgenic corn event DBN9229 inoculated with fall armyworm, oriental armyworm and Asian corn borer for detecting the nucleic acid sequence of the corn plant DBN9229 and the detection method thereof of the present invention.
图4为本发明用于检测玉米植物DBN9229的核酸序列及其检测方法的转基因玉米事件DBN9229接种亚洲玉米螟的田间效果图。4 is a field effect diagram of the transgenic corn event DBN9229 inoculated with Asian corn borer for detecting the nucleic acid sequence of the corn plant DBN9229 and the detection method thereof of the present invention.
图5为本发明用于检测玉米植物DBN9229的核酸序列及其检测方法的转基因玉米事件DBN9229在草地贪夜蛾自然发生条件下的田间效果图。5 is a field effect diagram of the transgenic corn event DBN9229 under the natural occurrence conditions of fall armyworm for detecting the nucleic acid sequence of corn plant DBN9229 and the detection method thereof of the present invention.
关于生物材料保藏的说明Notes on the Deposit of Biological Materials
转基因玉米事件DBN9229的种子已根据布达佩斯条约在位于北京市朝阳区北辰西路
1号院3号的中国微生物菌种保藏管理委员会普通微生物中心(China General Microbiological Culture Collection Center,CGMCC)进行保藏,其具有保藏号CGMCC No.45229,且保藏时间为2022年7月29日。保藏物将在保藏处保藏30年。Seeds of the genetically modified maize event DBN9229 have been purchased from the Budapest Treaty at Beichen West Road, Chaoyang District, Beijing. The deposit is held at the China General Microbiological Culture Collection Center (CGMCC) at No. 3, Courtyard 1, with the deposit number CGMCC No. 45229 and the deposit date is July 29, 2022. The deposit will be kept at the deposit for 30 years.
序列信息Sequence information
本发明涉及的部分序列的信息提供于下面的表1中。The information of the partial sequences involved in the present invention is provided in Table 1 below.
表1:序列的描述
Table 1: Description of sequences
Table 1: Description of sequences
现参照下列意在举例说明本发明(而非限定本发明)的实施例来描述本发明。The invention will now be described with reference to the following examples which are intended to illustrate the invention rather than to limit the invention.
除非特别指明,否则基本上按照本领域内熟知的以及在各种参考文献中描述的常规方法进行实施例中描述的实验和方法。例如,本发明中所使用的免疫学、生物化学、化学、分子生物学、微生物学、细胞生物学、基因组学和重组DNA等常规技术,可参见萨姆布鲁克(Sambrook)、弗里奇(Fritsch)和马尼亚蒂斯(Maniatis),《分子克隆:实验室手册》(MOLECULAR CLONING:A LABORATORY MANUAL),第2次编辑(1989);《当代分子生物学实验手册》(CURRENT PROTOCOLS IN MOLECULAR BIOLOGY)(F.M.奥苏贝尔(F.M.Ausubel)等人编辑,(1987));《酶学方法》(METHODS IN ENZYMOLOGY)系列(学术出版公司):《PCR 2:实用方法》(PCR 2:A PRACTICAL APPROACH)(M.J.麦克弗森(M.J.MacPherson)、B.D.黑
姆斯(B.D.Hames)和G.R.泰勒(G.R.Taylor)编辑(1995)),以及《动物细胞培养》(ANIMAL CELL CULTURE)(R.I.弗雷谢尼(R.I.Freshney)编辑(1987))。Unless otherwise specified, the experiments and methods described in the embodiments are basically carried out according to conventional methods well known in the art and described in various references. For example, conventional techniques such as immunology, biochemistry, chemistry, molecular biology, microbiology, cell biology, genomics and recombinant DNA used in the present invention can be found in Sambrook, Fritsch and Maniatis, MOLECULAR CLONING: A LABORATORY MANUAL, 2nd edition (1989); CURRENT PROTOCOLS IN MOLECULAR BIOLOGY (FM Ausubel et al., ed., (1987)); METHODS IN ENZYMOLOGY series (Academic Publishing Company): PCR 2: A PRACTICAL APPROACH (MJ MacPherson, BD Black et al., ed., (1989); ... Hames (BD Hames and GR Taylor eds. (1995)), and ANIMAL CELL CULTURE (RI Freshney ed. (1987)).
另外,实施例中未注明具体条件者,按照常规条件或制造商建议的条件进行。所用试剂或仪器未注明生产厂商者,均为可以通过市购获得的常规产品。本领域技术人员知晓,实施例以举例方式描述本发明,且不意欲限制本发明所要求保护的范围。本文中提及的全部公开案和其他参考资料以其全文通过引用合并入本文。In addition, if the specific conditions are not specified in the examples, they are carried out according to the conventional conditions or the conditions recommended by the manufacturer. If the manufacturer is not specified in the reagents or instruments used, they are all conventional products that can be obtained commercially. It is known to those skilled in the art that the embodiments describe the present invention by way of example and are not intended to limit the scope of the present invention. All public cases and other references mentioned herein are incorporated herein by reference in their entirety.
实施例1.载体克隆、转化与筛选Example 1. Vector cloning, transformation and screening
1.1、载体克隆1.1. Vector cloning
使用标准基因克隆技术构建重组表达载体DBN11815(如图2所示)。所述载体DBN11815包含三个串联的转基因表达盒,第一个表达盒由玉米多聚泛素基因1启动子(prZmUbi1),可操作地连接到来源于苏云金芽孢杆菌具有昆虫抗性的Cry1Fa2蛋白(cCry1Fa2)上,可操作地连接到根癌农杆菌A6株pTiA6质粒甘露碱合酶的转录终止子(tORF25PolyA)上,可操作地连接到核骨架结合序列(eRB7)上而组成;第二个表达盒由水稻肌动蛋白1启动子(prOsAct1),可操作的连接到玉米Rubisco基因叶绿体定位信号肽(spZmCTP2)上,可操作的连接到来源于苏云金芽孢杆菌具有昆虫抗性的Cry2Ab2蛋白(cCry2Ab2)上,可操作的连接到玉米In2-1基因转录终止子(tIn2)上而组成;第三个表达盒由花椰菜花叶病毒35S启动子(pr35S),可操作地连接到来源于链霉菌的具有草铵膦耐受性的膦丝菌素N-乙酰基转移酶(cPAT)上,并可操作地连接到花椰菜花叶病毒35S的转录终止子(t35S)上而组成。The recombinant expression vector DBN11815 (as shown in Figure 2) was constructed using standard gene cloning technology. The vector DBN11815 contains three transgenic expression cassettes in series. The first expression cassette is composed of the maize polyubiquitin gene 1 promoter (prZmUbi1), which is operably linked to the insect-resistant Cry1Fa2 protein (cCry1Fa2) from Bacillus thuringiensis, which is operably linked to the transcription terminator (tORF25PolyA) of the mannopine synthase of the pTiA6 plasmid of Agrobacterium tumefaciens A6 strain, and which is operably linked to the nuclear skeleton binding sequence (eRB7); the second expression cassette is composed of the rice actin 1 promoter (prOsAct1), which is operably linked to the maize The Rubisco gene chloroplast localization signal peptide (spZmCTP2) is operably linked to the insect-resistant Cry2Ab2 protein (cCry2Ab2) from Bacillus thuringiensis, and is operably linked to the transcription terminator (tIn2) of the corn In2-1 gene; the third expression cassette is composed of the cauliflower mosaic virus 35S promoter (pr35S), which is operably linked to the glufosinate-tolerant phosphinothricin N-acetyltransferase (cPAT) from Streptomyces, and is operably linked to the transcription terminator (t35S) of the cauliflower mosaic virus 35S.
将所述载体DBN11815用液氮法转化到农杆菌LBA4404(Invitrgen,Chicago,USA;Cat.No:18313-015)中,并且以草铵膦为选择标记对转化细胞进行筛选。The vector DBN11815 was transformed into Agrobacterium LBA4404 (Invitrgen, Chicago, USA; Cat. No: 18313-015) using the liquid nitrogen method, and the transformed cells were screened using glufosinate-ammonium as a selection marker.
1.2、植物转化1.2 Plant transformation
采用常规的农杆菌侵染法进行转化,将无菌培养的玉米品种DBN567的幼胚与本实施例1.1中所述的农杆菌共培养,将构建的重组表达载体DBN11815中的T-DNA转入到玉米染色体组中,以产生转基因玉米事件DBN9229。Conventional Agrobacterium infection method was used for transformation. The immature embryos of the sterile corn variety DBN567 were co-cultured with the Agrobacterium described in Example 1.1, and the T-DNA in the constructed recombinant expression vector DBN11815 was transferred into the corn chromosome to produce the transgenic corn event DBN9229.
对于农杆菌介导的玉米转化,简要地,从玉米中分离未成熟的幼胚,用农杆菌悬浮液接触幼胚,其中农杆菌能够将DBN11815载体中的T-DNA(包含Cry1Fa2基因的核苷酸序列、Cry2Ab2基因的核苷酸序列和pat基因的核苷酸序列)传递至幼胚之一的至少一个细胞(步骤1:侵染步骤),在此步骤中,幼胚优选地浸入农杆菌悬浮液(OD660=0.4-
0.6,侵染培养基(MS盐4.3g/L、MS维他命、干酪素300mg/L、蔗糖68.5g/L、葡萄糖36g/L、乙酰丁香酮(AS)40mg/L、2,4-二氯苯氧乙酸(2,4-D)1mg/L,pH 5.3))中以启动接种。幼胚与农杆菌共培养一段时期(3天)(步骤2:共培养步骤)。优选地,幼胚在侵染步骤后在固体培养基(MS盐4.3g/L、MS维他命、干酪素300mg/L、蔗糖20g/L、葡萄糖10g/L、AS100mg/L、2,4-D 1mg/L、琼脂8g/L,pH 5.8)上培养。在此共培养阶段后,可以有一个选择性的“恢复”步骤。在“恢复”步骤中,恢复培养基(MS盐4.3g/L、MS维他命、干酪素300mg/L、蔗糖30g/L、2,4-D 1mg/L、头孢霉素250mg/L、植物凝胶3g/L,pH 5.8)中至少存在一种己知抑制农杆菌生长的抗生素(头孢霉素150-250mg/L),不添加植物转化体的选择剂(步骤3:恢复步骤)。优选地,幼胚在有抗生素但没有选择剂的固体培养基上培养,以消除农杆菌并为侵染细胞提供恢复期。接着,接种的幼胚在含选择剂(草铵膦)的培养基上培养并选择生长着的转化愈伤组织(步骤4:选择步骤)。优选地,幼胚在有选择剂的筛选固体培养基(MS盐4.3g/L、MS维他命、干酪素300mg/L、蔗糖30g/L、头孢霉素250mg/L、草铵膦10mg/L、2,4-D 1mg/L、植物凝胶3g/L,pH 5.8)上培养,导致转化的细胞选择性生长。然后,愈伤组织再生成植物(步骤5:再生步骤),优选地,在含选择剂的培养基上生长的愈伤组织在固体培养基(MS分化培养基和MS生根培养基)上培养以再生植物。For Agrobacterium-mediated transformation of maize, briefly, immature embryos are separated from maize and contacted with an Agrobacterium suspension, wherein the Agrobacterium is capable of transferring the T-DNA (containing the nucleotide sequence of the Cry1Fa2 gene, the nucleotide sequence of the Cry2Ab2 gene and the nucleotide sequence of the pat gene) in the DBN11815 vector to at least one cell of one of the embryos (step 1: infection step). In this step, the embryos are preferably immersed in the Agrobacterium suspension (OD 660 = 0.4- 0.6, infection medium (MS salts 4.3 g/L, MS vitamins, casein 300 mg/L, sucrose 68.5 g/L, glucose 36 g/L, acetosyringone (AS) 40 mg/L, 2,4-dichlorophenoxyacetic acid (2,4-D) 1 mg/L, pH 5.3)) to start the inoculation. The young embryos are co-cultivated with Agrobacterium for a period of time (3 days) (step 2: co-cultivation step). Preferably, the young embryos are cultured on solid medium (MS salts 4.3 g/L, MS vitamins, casein 300 mg/L, sucrose 20 g/L, glucose 10 g/L, AS 100 mg/L, 2,4-D 1 mg/L, agar 8 g/L, pH 5.8) after the infection step. After this co-cultivation stage, there can be an optional "recovery" step. In the "recovery" step, at least one antibiotic known to inhibit the growth of Agrobacterium (cephalosporin 150-250 mg/L) is present in the recovery medium (MS salts 4.3 g/L, MS vitamins, casein 300 mg/L, sucrose 30 g/L, 2,4-D 1 mg/L, cephalosporin 250 mg/L, phytagel 3 g/L, pH 5.8), and no selection agent for plant transformants is added (step 3: recovery step). Preferably, the young embryos are cultured on a solid medium with antibiotics but no selection agent to eliminate Agrobacterium and provide a recovery period for infected cells. Next, the inoculated young embryos are cultured on a medium containing a selection agent (glufosinate-ammonium) and growing transformed callus is selected (step 4: selection step). Preferably, the immature embryos are cultured on a screening solid medium with a selection agent (MS salts 4.3 g/L, MS vitamins, casein 300 mg/L, sucrose 30 g/L, cephalosporin 250 mg/L, glufosinate 10 mg/L, 2,4-D 1 mg/L, plant gel 3 g/L, pH 5.8), resulting in selective growth of transformed cells. Then, callus tissue is regenerated into plants (step 5: regeneration step), preferably, callus tissue grown on a medium containing a selection agent is cultured on a solid medium (MS differentiation medium and MS rooting medium) to regenerate plants.
筛选得到的抗性愈伤组织转移到所述MS分化培养基(MS盐4.3g/L、MS维他命、干酪素300mg/L、蔗糖30g/L、6-苄基腺嘌呤2mg/L、头孢霉素250mg/L、4-[羟基(甲基)膦酰基]-DL-高丙氨酸5mg/L、植物凝胶3g/L,pH 5.8)上,温度25℃下培养分化。分化出来的小苗转移到所述MS生根培养基(MS盐2.15g/L、MS维他命、干酪素300mg/L、蔗糖30g/L、头孢霉素250mg/L、吲哚-3-乙酸1mg/L、植物凝胶3g/L,pH 5.8)上,温度25℃下培养至约10cm高,移至温室培养至结实。在温室中,每天于温度28℃下培养16h,再于温度20℃下培养8h。The resistant callus obtained by screening was transferred to the MS differentiation medium (MS salt 4.3g/L, MS vitamin, casein 300mg/L, sucrose 30g/L, 6-benzyladenine 2mg/L, cephalosporin 250mg/L, 4-[hydroxy(methyl)phosphonyl]-DL-homoalanine 5mg/L, plant gel 3g/L, pH 5.8), and cultured for differentiation at 25°C. The differentiated seedlings were transferred to the MS rooting medium (MS salt 2.15g/L, MS vitamin, casein 300mg/L, sucrose 30g/L, cephalosporin 250mg/L, indole-3-acetic acid 1mg/L, plant gel 3g/L, pH 5.8), cultured at 25°C to a height of about 10cm, and moved to a greenhouse for culture until fruiting. In the greenhouse, culture was carried out at a temperature of 28°C for 16h every day and then at a temperature of 20°C for 8h.
1.3、转基因事件的鉴定和筛选1.3 Identification and screening of transgenic events
一共产生235个独立转基因T0单株。A total of 235 independent transgenic T0 individuals were generated.
由于遗传转化、基因插入等均可能对玉米植株造成农艺性状上的影响(例如黄弱、死亡、卷叶或结实差等),因此将上述235个独立的转基因T0单株送入温室移栽并进行培养,以鉴定转基因T0单株在不同时期(苗期-拔节期、拔节期-散粉期和灌浆期-成熟期)的农艺性状表现,共获得176个农艺性状表现正常的转基因T0单株。Since genetic transformation, gene insertion, etc. may affect the agronomic traits of corn plants (such as yellowing, death, leaf curling or poor fruiting, etc.), the above 235 independent transgenic T0 plants were sent to the greenhouse for transplanting and cultivation to identify the agronomic traits of the transgenic T0 plants at different stages (seedling stage-jointing stage, jointing stage-pollen shedding stage and filling stage-maturity stage). A total of 176 transgenic T0 plants with normal agronomic traits were obtained.
通过TaqManTM分析检测上述176个转基因玉米植株是否存在单拷贝的Cry1Fa2、
Cry2Ab2和pat基因,且不含载体骨架序列,共获得97个转基因T0单株;通过转基因插入位点分析,共筛选到20个T-DNA两侧序列完整、T-DNA没有插入到玉米基因组的重要基因中、基因插入没有产生新的开放阅读框(ORF)的转基因T0单株;通过对主要靶标昆虫(如小地老虎、东方黏虫、棉铃虫)的抗性评价和比较,共筛选到15个昆虫抗性良好的转基因T0单株;通过对草铵膦除草剂耐受性的评价和比较,共筛选到15个草铵膦除草剂耐受性良好的转基因T0单株;在不同世代、不同地理环境和/或不同遗传背景材料的情况下,通过对转基因玉米植株的农艺性状、分子生物学、靶标昆虫抗性、草铵膦耐受性等是否可稳定遗传进行筛选,选定了转基因玉米事件DBN9229是优异的,其具有单拷贝转基因(参见实施例2)、良好的昆虫抗性、草铵膦除草剂耐受性和农艺性状表现(参见实施例6和实施例7)。The 176 transgenic maize plants were tested for the presence of single copies of Cry1Fa2, Cry2Ab2 and pat genes, and no vector backbone sequence, a total of 97 transgenic T0 plants were obtained; through transgenic insertion site analysis, a total of 20 transgenic T0 plants with complete T-DNA flanking sequences, T-DNA not inserted into important genes in the maize genome, and gene insertion without generating new open reading frames (ORFs) were screened; through evaluation and comparison of resistance to major target insects (such as black cutworms, oriental armyworms, and cotton bollworms), a total of 15 transgenic T0 plants with good insect resistance were screened; through evaluation and comparison of tolerance to glufosinate herbicides, a total of 15 transgenic T0 plants with good tolerance to glufosinate herbicides were screened. 0 single plant; in different generations, different geographical environments and/or different genetic background materials, the agronomic traits, molecular biology, target insect resistance, glufosinate tolerance, etc. of the transgenic corn plants were screened for stably inherited, and the transgenic corn event DBN9229 was selected as excellent, having a single copy transgene (see Example 2), good insect resistance, glufosinate herbicide tolerance and agronomic trait performance (see Examples 6 and 7).
实施例2.用TaqMan进行转基因玉米事件DBN9229检测Example 2. Detection of transgenic corn event DBN9229 using TaqMan
取转基因玉米事件DBN9229的叶片约100mg作为样品,用植物DNA提取试剂盒(DNeasy Plant Maxi Kit,Qiagen)提取其基因组DNA,通过Taqman探针荧光定量PCR方法检测Cry1Fa2基因、Cry2Ab2基因和pat基因的拷贝数。同时以野生型玉米植株作为对照,按照上述方法进行检测分析。实验设3次重复,取平均值。About 100 mg of leaves of transgenic corn event DBN9229 were taken as samples, and the genomic DNA was extracted using a plant DNA extraction kit (DNeasy Plant Maxi Kit, Qiagen). The copy numbers of Cry1Fa2 gene, Cry2Ab2 gene and pat gene were detected by Taqman probe fluorescence quantitative PCR method. At the same time, wild-type corn plants were used as controls and the above method was used for detection and analysis. The experiment was repeated 3 times and the average value was taken.
具体方法如下:The specific method is as follows:
步骤1、取转基因玉米事件DBN9229的叶片(授粉后)100mg,在研钵中用液氮研成匀浆,每个样品取3个重复;Step 1: Take 100 mg of leaves (after pollination) of transgenic corn event DBN9229, grind them into a homogenate using liquid nitrogen in a mortar, and take 3 replicates for each sample;
步骤2、使用植物DNA提取试剂盒(DNeasy Plant Maxi Kit,Qiagen)提取上述样品的基因组DNA,具体方法参考其产品说明书;Step 2: Use a plant DNA extraction kit (DNeasy Plant Maxi Kit, Qiagen) to extract genomic DNA from the above samples. For specific methods, refer to its product manual.
步骤3、用超微量分光光度计(NanoDrop 2000,Thermo Scientific)测定上述样品的基因组DNA浓度;Step 3: Determine the genomic DNA concentration of the above samples using an ultra-micro spectrophotometer (NanoDrop 2000, Thermo Scientific);
步骤4、调整上述样品的基因组DNA浓度至同一浓度值,所述浓度值的范围为80-100ng/μL;Step 4, adjusting the genomic DNA concentration of the above samples to the same concentration value, wherein the concentration value ranges from 80-100 ng/μL;
步骤5、采用Taqman探针荧光定量PCR方法鉴定样品的拷贝数,以经过鉴定已知拷贝数的样品作为标准品,以野生型玉米植株的样品作为对照,每个样品3个重复,取其平均值;荧光定量PCR引物和探针序列分别是:Step 5: Use Taqman probe fluorescence quantitative PCR method to identify the copy number of the sample, use the sample with known copy number as the standard, and use the sample of wild-type corn plant as the control, and repeat 3 times for each sample to take the average value; the sequences of fluorescence quantitative PCR primers and probes are:
以下引物和探针用来检测Cry1Fa2基因序列:The following primers and probes were used to detect the Cry1Fa2 gene sequence:
引物1:ttgtctgagtttgttccaggtgtg如序列表中SEQ ID NO:16所示;
Primer 1: ttgtctgagtttgttccaggtgtg as shown in SEQ ID NO: 16 in the sequence listing;
引物2:ccaatcagatggagtgatgaagc如序列表中SEQ ID NO:17所示;Primer 2: ccaatcagatggagtgatgaagc as shown in SEQ ID NO: 17 in the sequence listing;
探针1:tgcgtttggcctcttcgacctcatc如序列表中SEQ ID NO:18所示;Probe 1: tgcgtttggcctcttcgacctcatc as shown in SEQ ID NO: 18 in the sequence listing;
以下引物和探针用来检测Cry2Ab2基因序列:The following primers and probes were used to detect the Cry2Ab2 gene sequence:
引物3:gctcctgctgccactctttg如序列表中SEQ ID NO:19所示;Primer 3: gctcctgctgccactctttg as shown in SEQ ID NO: 19 in the sequence listing;
引物4:gaggatcacgtcacgaatgaag如序列表中SEQ ID NO:20所示;Primer 4: gaggatcacgtcacgaatgaag as shown in SEQ ID NO: 20 in the sequence listing;
探针2:tcaggctgccaacctgcacctct如序列表中SEQ ID NO:21所示;Probe 2: tcaggctgccaacctgcacctct as shown in SEQ ID NO: 21 in the sequence listing;
以下引物和探针用来检测pat基因序列:The following primers and probes were used to detect the pat gene sequence:
引物5:gagggtgttgtggctggtattg如序列表中SEQ ID NO:22所示;Primer 5: gagggtgttgtggctggtattg as shown in SEQ ID NO: 22 in the sequence listing;
引物6:tctcaactgtccaatcgtaagcg如序列表中SEQ ID NO:23所示;Primer 6: tctcaactgtccaatcgtaagcg as shown in SEQ ID NO: 23 in the sequence listing;
探针3:cttacgctgggccctggaaggctag如序列表中SEQ ID NO:24所示;Probe 3: cttacgctgggccctggaaggctag as shown in SEQ ID NO: 24 in the sequence listing;
PCR反应体系为:
The PCR reaction system is:
The PCR reaction system is:
所述50×引物/探针混合物包含1mM浓度的每种引物各45μL,100μM浓度的探针50μL和860μL 1×TE缓冲液(10mM Tris-HCl、1mM EDTA,pH8.0),并且在4℃,贮藏在琥珀试管中。The 50× primer/probe mixture contained 45 μL of each primer at 1 mM concentration, 50 μL of probe at 100 μM concentration, and 860 μL 1× TE buffer (10 mM Tris-HCl, 1 mM EDTA, pH 8.0), and was stored in an amber test tube at 4°C.
PCR反应条件为:
The PCR reaction conditions were:
The PCR reaction conditions were:
利用快速实时荧光定量PCR系统软件(Applied Biosystems 7900HT Fast Real-Time PCR System SDS v2.3,Applied Biosystems)分析数据,结果表明获得的转基因玉米事件DBN9229为单拷贝。The data were analyzed using fast real-time fluorescence quantitative PCR system software (Applied Biosystems 7900HT Fast Real-Time PCR System SDS v2.3, Applied Biosystems), and the results showed that the transgenic corn event DBN9229 obtained was a single copy.
实施例3.分析转基因玉米事件DBN9229的插入位点Example 3. Analysis of the insertion site of transgenic corn event DBN9229
3.1、基因组DNA提取
3.1 Genomic DNA Extraction
DNA提取按照常规采用的CTAB(十六烷基三甲基溴化铵)法:取2g转基因玉米事件DBN9229的幼嫩叶片在液氮中研磨成粉后,加入0.5mL于温度65℃预热的DNA提取CTAB缓冲液(20g/L CTAB、1.4M NaCl、100mM Tris-HCl、20mM EDTA(乙二胺四乙酸),用NaOH调pH至8.0),充分混匀后,于温度65℃抽提90min;加入0.5倍体积苯酚和0.5倍体积氯仿,颠倒混匀;12000rpm(每分钟转数)转速下离心10min;吸取上清液,加入2倍体积无水乙醇,轻柔晃动离心管,于温度4℃静置30min;12000rpm转速下再离心10min;收集DNA到管底;弃上清液,用1mL质量浓度为70%的乙醇,洗涤沉淀;12000rpm转速下离心5min;真空抽干或在超净台吹干;DNA沉淀溶解于适量的TE缓冲液中,保存在温度-20℃条件下。DNA extraction was performed according to the conventional CTAB (cetyltrimethylammonium bromide) method: 2 g of young leaves of transgenic corn event DBN9229 were ground into powder in liquid nitrogen, and then 0.5 mL of DNA extraction CTAB buffer (20 g/L CTAB, 1.4 M NaCl, 100 mM Tris-HCl, 20 mM EDTA (ethylenediaminetetraacetic acid), pH adjusted to 8.0 with NaOH) preheated at 65°C was added, mixed thoroughly, and then extracted at 65°C for 90 min; 0.5 times the volume of phenol and 0. 5 times the volume of chloroform, invert to mix; centrifuge at 12000rpm (revolutions per minute) for 10 minutes; aspirate the supernatant, add 2 times the volume of anhydrous ethanol, gently shake the centrifuge tube, and let it stand at 4°C for 30 minutes; centrifuge at 12000rpm for another 10 minutes; collect the DNA at the bottom of the tube; discard the supernatant, wash the precipitate with 1mL of 70% ethanol; centrifuge at 12000rpm for 5 minutes; vacuum dry or blow dry in a clean bench; dissolve the DNA precipitate in an appropriate amount of TE buffer and store at -20°C.
3.2、侧翼DNA序列的分析3.2 Analysis of flanking DNA sequences
对上述提取的DNA样品进行浓度测定,使待测样品的浓度位于80-100ng/μL之间。用限制性内切酶Eco RI(5’端分析)和Nco I(3’端分析)分别酶切基因组DNA。每个酶切体系中加入26.5μL基因组DNA,0.5μL上述限制性内切酶以及3μL酶切缓冲液(采用的限制性酶均是NEB公司的酶及其配套的缓冲液或通用缓冲液,现称NEBCutSmart),酶切1h。待酶切结束后,向酶切体系中加入70μL无水乙醇,冰浴30min,12000rpm转速下离心7min,弃上清,吹干,之后加入8.5μL双蒸水、1μL10×T4-DNA连接酶缓冲液(NEB T4 DNA Ligase Reaction Buffer,其具体配方可访问NEB网站或参考https://www.neb.com/products/restriction-endonucleases、https://www.neb.com/products/b0202-t4-dna-ligase-reaction-buffer)以及0.5μL T4-DNA连接酶在温度4℃连接过夜。用一系列嵌套引物进行PCR扩增分离5’端和3’端基因组DNA。具体的,分离5’端基因组DNA的引物组合包括SEQ ID NO:13和SEQ ID NO:30作为第一引物,SEQ ID NO:31和SEQ ID NO:32作为第二引物,SEQ ID NO:13作为测序引物。分离3’端基因组DNA引物组合包括SEQ ID NO:15和SEQ ID NO:33作为第一引物,SEQ ID NO:34和SEQ ID NO:35作为第二引物,SEQ ID NO:15作为测序引物,PCR反应条件如表3所示。The concentration of the extracted DNA samples was measured to make the concentration of the sample to be tested between 80-100 ng/μL. The genomic DNA was digested with restriction endonucleases Eco RI (5' end analysis) and Nco I (3' end analysis). 26.5 μL of genomic DNA, 0.5 μL of the above restriction endonucleases and 3 μL of digestion buffer (the restriction enzymes used were all enzymes from NEB and their matching buffers or universal buffers, now called NEBCutSmart) were added to each digestion system and digested for 1 hour. After the digestion is completed, add 70 μL of anhydrous ethanol to the digestion system, ice bath for 30 minutes, centrifuge at 12000 rpm for 7 minutes, discard the supernatant, blow dry, then add 8.5 μL of double distilled water, 1 μL of 10×T 4 -DNA ligase buffer (NEB T4 DNA Ligase Reaction Buffer, the specific formula can be visited NEB website or refer to https://www.neb.com/products/restriction-endonucleases, https://www.neb.com/products/b0202-t4-dna-ligase-reaction-buffer) and 0.5 μL of T 4 -DNA ligase to connect overnight at 4°C. Use a series of nested primers to perform PCR amplification to separate the 5' and 3' end genomic DNA. Specifically, the primer combination for separating the 5' end genomic DNA includes SEQ ID NO: 13 and SEQ ID NO: 30 as the first primer, SEQ ID NO: 31 and SEQ ID NO: 32 as the second primer, and SEQ ID NO: 13 as the sequencing primer. The primer combination for separating the 3' end genomic DNA includes SEQ ID NO: 15 and SEQ ID NO: 33 as the first primer, SEQ ID NO: 34 and SEQ ID NO: 35 as the second primer, and SEQ ID NO: 15 as the sequencing primer. The PCR reaction conditions are shown in Table 3.
上述PCR扩增反应所获得的扩增产物在质量分数为2.0%琼脂糖凝胶上电泳以分离PCR扩增产物,随后使用胶回收试剂盒(QIAquick Gel Extraction Kit,目录#_28704,Qiagen Inc.,Valencia,CA)从琼脂糖基质分离目的片段。然后对纯化的PCR扩增产物测序(例如,使用ABIPrismTM 377,PE Biosystems,Foster City,CA)并分析(例如,使用DNASTAR序列分析软件,DNASTAR Inc.,Madison,WI)。
The amplified products obtained by the above PCR amplification reaction were electrophoresed on a 2.0% agarose gel to separate the PCR amplified products, and then the target fragments were separated from the agarose matrix using a gel recovery kit (QIAquick Gel Extraction Kit, catalog #_28704, Qiagen Inc., Valencia, CA). The purified PCR amplified products were then sequenced (e.g., using ABIPrismTM 377, PE Biosystems, Foster City, CA) and analyzed (e.g., using DNASTAR sequence analysis software, DNASTAR Inc., Madison, WI).
使用标准PCR方法确认5’和3’侧翼序列和接合序列。5’侧翼序列和接合序列可使用SEQ ID NO:8或SEQ ID NO:12,组合SEQ ID NO:9、SEQ ID NO:13或SEQ ID NO:30来确认。3’侧翼序列和接合序列可使用SEQ ID NO:10或SEQ ID NO:14,组合SEQ ID NO:11、SEQ ID NO:15或SEQ ID NO:33来确认。PCR反应体系和扩增条件如表2和表3所示。本领域技术人员将理解,其它引物序列也可用于确认侧翼序列和接合序列。Standard PCR methods were used to confirm the 5' and 3' flanking sequences and the junction sequence. The 5' flanking sequence and the junction sequence can be confirmed using SEQ ID NO: 8 or SEQ ID NO: 12, in combination with SEQ ID NO: 9, SEQ ID NO: 13, or SEQ ID NO: 30. The 3' flanking sequence and the junction sequence can be confirmed using SEQ ID NO: 10 or SEQ ID NO: 14, in combination with SEQ ID NO: 11, SEQ ID NO: 15, or SEQ ID NO: 33. The PCR reaction system and amplification conditions are shown in Tables 2 and 3. Those skilled in the art will appreciate that other primer sequences can also be used to confirm the flanking sequence and the junction sequence.
PCR扩增产物的DNA测序提供了可以用于设计其他DNA分子的DNA,所述其他DNA分子作为引物和探针可用于鉴定来源于转基因玉米事件DBN9229的玉米植物或种子。DNA sequencing of the PCR amplification products provides DNA that can be used to design other DNA molecules that can be used as primers and probes to identify corn plants or seeds derived from transgenic corn event DBN9229.
发现在SEQ ID NO:5的核苷酸第1-487位显示的为玉米基因组序列在转基因玉米事件DBN9229插入序列的左边界侧翼(5’侧翼序列),在SEQ ID NO:5的核苷酸第11987-12446位显示的为玉米基因组序列在转基因玉米事件DBN9229插入序列的右边界侧翼(3’侧翼序列)。5’接合序列在SEQ ID NO:1中列出,3’接合序列在SEQ ID NO:2中列出。It was found that the nucleotides 1-487 of SEQ ID NO:5 showed the left border flank of the insertion sequence of the transgenic corn event DBN9229 of the maize genomic sequence (5' flanking sequence), and the nucleotides 11987-12446 of SEQ ID NO:5 showed the right border flank of the insertion sequence of the transgenic corn event DBN9229 of the maize genomic sequence (3' flanking sequence). The 5' junction sequence is listed in SEQ ID NO:1, and the 3' junction sequence is listed in SEQ ID NO:2.
3.3、PCR接合性测定3.3. PCR zygosity assay
接合序列是相对短的多核苷酸分子,其是新的DNA序列,当在多核酸检测分析中检测到时对于转基因玉米事件DBN9229的DNA是诊断性的。SEQ ID NO:1和SEQ ID NO:2中的接合序列为转基因玉米事件DBN9229中转基因片段的插入位点和玉米基因组DNA的每一侧的11个多核苷酸。更长或更短的多核苷酸接合序列可以从SEQ ID NO:3或SEQ ID NO:4中选择。接合序列(5’连接区域SEQ ID NO:1,和3’连接区域SEQ ID NO:2)作为DNA探针或作为DNA引物分子在DNA检测方法中是有用的。接合序列SEQ ID NO:6和SEQ ID NO:7也是转基因玉米事件DBN9229中新的DNA序列,其也可以作为DNA探针或作为DNA引物分子检测转基因玉米事件DBN9229 DNA的存在。所述SEQ ID NO:6(SEQ ID NO:3的核苷酸488-1105位)跨越了DBN11815构建体DNA序列和t35S转录终止序列和pat基因序列,所述SEQ ID NO:7(SEQ ID NO:4的核苷酸1-397位)跨越了RB7基因表达调控序列和DBN11815构建体DNA序列。The junction sequence is a relatively short polynucleotide molecule that is a novel DNA sequence that is diagnostic for the DNA of transgenic corn event DBN9229 when detected in a polynucleotide detection assay. The junction sequences in SEQ ID NO:1 and SEQ ID NO:2 are 11 polynucleotides on each side of the insertion site of the transgenic fragment in transgenic corn event DBN9229 and the corn genomic DNA. Longer or shorter polynucleotide junction sequences can be selected from SEQ ID NO:3 or SEQ ID NO:4. The junction sequences (5' junction region SEQ ID NO:1, and 3' junction region SEQ ID NO:2) are useful as DNA probes or as DNA primer molecules in DNA detection methods. The junction sequences SEQ ID NO:6 and SEQ ID NO:7 are also novel DNA sequences in transgenic corn event DBN9229, which can also be used as DNA probes or as DNA primer molecules to detect the presence of transgenic corn event DBN9229 DNA. The SEQ ID NO:6 (nucleotides 488-1105 of SEQ ID NO:3) spans the DBN11815 construct DNA sequence, the t35S transcription termination sequence and the pat gene sequence, and the SEQ ID NO:7 (nucleotides 1-397 of SEQ ID NO:4) spans the RB7 gene expression regulatory sequence and the DBN11815 construct DNA sequence.
此外,通过使用来自SEQ ID NO:3或SEQ ID NO:4的至少一个引物来产生扩增子,所述引物用于PCR方法中时产生转基因玉米事件DBN9229的诊断性扩增子。In addition, an amplicon is produced by using at least one primer from SEQ ID NO:3 or SEQ ID NO:4, which, when used in a PCR method, produces a diagnostic amplicon of transgenic corn event DBN9229.
具体地,从转基因插入序列的5’端产生PCR扩增产物,该PCR扩增产物为包含来源于转基因玉米事件DBN9229的植物材料的基因组中侧翼于T-DNA插入序列的5’端的
基因组DNA的一部分。这个PCR扩增产物包含SEQ ID NO:3。为了进行PCR扩增,设计与侧翼于转基因插入序列的5’端的基因组DNA序列杂交的引物7(SEQ ID NO:8),和与之配对的位于T-DNA插入序列中pat基因序列的引物8(SEQ ID NO:9)。Specifically, a PCR amplification product is generated from the 5' end of the transgenic insertion sequence, the PCR amplification product is a PCR product containing the 5' end of the T-DNA insertion sequence flanking the genome of the plant material derived from the transgenic corn event DBN9229. This PCR amplification product contains SEQ ID NO: 3. For PCR amplification, primer 7 (SEQ ID NO: 8) was designed to hybridize with the genomic DNA sequence flanking the 5' end of the transgenic insertion sequence, and primer 8 (SEQ ID NO: 9) was paired with the pat gene sequence located in the T-DNA insertion sequence.
从转基因插入序列的3’端产生PCR扩增产物,该PCR扩增产物包含来源于转基因玉米事件DBN9229的植物材料的基因组中侧翼于T-DNA插入序列的3’端的基因组DNA的一部分。这个PCR扩增产物包含SEQ ID NO:4。为了进行PCR扩增,设计与侧翼于转基因插入序列的3’端的基因组DNA序列杂交的引物9(SEQ ID NO:10),和与之配对的与T-DNA插入序列中RB7基因表达调控序列的引物10(SEQ ID NO:11)。A PCR amplification product was generated from the 3' end of the transgenic insertion sequence, which PCR amplification product contained a portion of the genomic DNA flanking the 3' end of the T-DNA insertion sequence in the genome of the plant material from the transgenic corn event DBN9229. This PCR amplification product contained SEQ ID NO: 4. For PCR amplification, primer 9 (SEQ ID NO: 10) was designed to hybridize with the genomic DNA sequence flanking the 3' end of the transgenic insertion sequence, and primer 10 (SEQ ID NO: 11) paired with it was designed to hybridize with the RB7 gene expression regulatory sequence in the T-DNA insertion sequence.
表2和表3中说明的DNA扩增条件可以用于上述PCR接合性试验以产生转基因玉米事件DBN9229的诊断性扩增子。扩增子的检测可以通过使用Stratagene Robocycler、MJ Engine、Perkin-Elmer 9700或Eppendorf Mastercycler Gradient热循环仪等进行,或通过本领域技术人员已知的方法和设备进行。The DNA amplification conditions described in Tables 2 and 3 can be used in the above-mentioned PCR zygosity test to generate diagnostic amplicons for transgenic corn event DBN9229. Detection of the amplicons can be performed by using a Stratagene Robocycler, MJ Engine, Perkin-Elmer 9700 or Eppendorf Mastercycler Gradient thermal cycler, etc., or by methods and equipment known to those skilled in the art.
表2、用于转基因玉米事件DBN9229的5’端转基因插入物/基因组接合区域鉴定的PCR步骤和反应混合物条件
Table 2. PCR steps and reaction mixture conditions for identification of the 5' transgenic insert/genomic junction region of transgenic maize event DBN9229
Table 2. PCR steps and reaction mixture conditions for identification of the 5' transgenic insert/genomic junction region of transgenic maize event DBN9229
表3、热循环仪扩增条件
Table 3. Thermal cycler amplification conditions
Table 3. Thermal cycler amplification conditions
轻轻地混合,如果热循环仪上没有保温帽,可以在每个反应液上方添加1-2滴矿物油。使用表3中的循环参数在Stratagene Robocycler(Stratagene,La Jolla,CA)、MJ Engine(MJ R-Biorad,Hercules,CA)、Perkin-Elmer 9700(Perkin Elmer,Boston,MA)或Eppendorf Mastercycler Gradient(Eppendorf,Hamburg,Germany)热循环仪上进行PCR反应。MJ Engine或Eppendorf Mastercycler Gradient热循环仪应当在计算的模式下运行。Perkin-Elmer 9700热循环仪运行时要将变温速度(ramp speed)设定为最大值。Mix gently and add 1-2 drops of mineral oil over each reaction if the thermocycler does not have a cap. Perform PCR reactions on a Stratagene Robocycler (Stratagene, La Jolla, CA), MJ Engine (MJ R-Biorad, Hercules, CA), Perkin-Elmer 9700 (Perkin Elmer, Boston, MA), or Eppendorf Mastercycler Gradient (Eppendorf, Hamburg, Germany) thermocycler using the cycling parameters in Table 3. The MJ Engine or Eppendorf Mastercycler Gradient thermocycler should be run in calculated mode. The Perkin-Elmer 9700 thermocycler should be run with the ramp speed set to maximum.
实验结果表明:引物7和8(SEQ ID NO:8和9),当其用在转基因玉米事件DBN9229基因组DNA的PCR反应中时,产生1105bp片段的扩增产物,当其用在未转化玉米基因组DNA和非DBN9229玉米基因组DNA的PCR反应中时,没有片段被扩增;引物9和10(SEQ ID NO:10和11),当其用在转基因玉米事件DBN9229基因组DNA的PCR反应中时,产生860bp片段的扩增产物,当其用在未转化玉米基因组DNA和非DBN9229玉米基因组DNA的PCR反应中时,没有片段被扩增。The experimental results showed that: primers 7 and 8 (SEQ ID NO: 8 and 9), when used in the PCR reaction of the genomic DNA of the transgenic corn event DBN9229, produced an amplification product of a 1105bp fragment, and when used in the PCR reaction of the untransformed corn genomic DNA and the non-DBN9229 corn genomic DNA, no fragment was amplified; primers 9 and 10 (SEQ ID NO: 10 and 11), when used in the PCR reaction of the genomic DNA of the transgenic corn event DBN9229, produced an amplification product of a 860bp fragment, and when used in the PCR reaction of the untransformed corn genomic DNA and the non-DBN9229 corn genomic DNA, no fragment was amplified.
PCR接合性测定还可用于鉴定来源于转基因玉米事件DBN9229的材料是纯合子或是杂合子。将引物11(SEQ ID NO:12)、引物12(SEQ ID NO:13)和引物13(SEQ ID NO:14)用于扩增反应以产生转基因玉米事件DBN9229的诊断性扩增子。表4和表5中说明的DNA扩增条件可以用于上述接合性试验以产生转基因玉米事件DBN9229的诊断性扩增子。The PCR zygosity assay can also be used to identify whether material derived from transgenic corn event DBN9229 is homozygous or heterozygous. Primer 11 (SEQ ID NO: 12), Primer 12 (SEQ ID NO: 13) and Primer 13 (SEQ ID NO: 14) are used in an amplification reaction to produce a diagnostic amplicon for transgenic corn event DBN9229. The DNA amplification conditions described in Tables 4 and 5 can be used in the above zygosity assay to produce a diagnostic amplicon for transgenic corn event DBN9229.
表4、接合性测定反应液
Table 4. Reaction solution for zygosity determination
Table 4. Reaction solution for zygosity determination
表5、接合性测定的热循环仪扩增条件
Table 5. Thermal cycler amplification conditions for zygosity assay
Table 5. Thermal cycler amplification conditions for zygosity assay
使用表5中的循环参数在Stratagene Robocycler(Stratagene,La Jolla,CA)、MJ Engine(MJ R-Biorad,Hercules,CA)、Perkin-Elmer 9700(Perkin Elmer,Boston,MA)或Eppendorf Mastercycler Gradient(Eppendorf,Hamburg,Germany)热循环仪上进行PCR反应。MJ Engine或Eppendorf Mastercycler Gradient热循环仪应当在计算的模式下运行。Perkin-Elmer 9700热循环仪运行时要将变温速度(ramp speed)设定为最大值。PCR reactions were performed on a Stratagene Robocycler (Stratagene, La Jolla, CA), MJ Engine (MJ R-Biorad, Hercules, CA), Perkin-Elmer 9700 (Perkin Elmer, Boston, MA), or Eppendorf Mastercycler Gradient (Eppendorf, Hamburg, Germany) thermocycler using the cycling parameters in Table 5. The MJ Engine or Eppendorf Mastercycler Gradient thermocycler should be run in calculated mode. The Perkin-Elmer 9700 thermocycler should be run with the ramp speed set to maximum.
在所述扩增反应中,含有模板DNA的生物样品含有诊断该样品中转基因玉米事件DBN9229的存在情况的DNA。或者扩增反应将由含有来源于玉米基因组的DNA的生物样品产生两个不同的DNA扩增子,所述来源于玉米基因组的DNA相对于转基因玉米事件DBN9229中存在的插入DNA对应的等位基因是杂合的。这两个不同的扩增子将对应于来源于野生型玉米基因组基因座的第一扩增子(SEQ ID NO:12和SEQ ID NO:14)和诊断转基因玉米事件DBN9229 DNA的存在情况的第二扩增子(SEQ ID NO:12和SEQ ID NO:13)。仅产生对应于针对杂合基因组描述的第二扩增子的单个扩增子的玉米DNA样品,可诊断确定该样品中转基因玉米事件DBN9229的存在,且该样品由相对于转基因玉米植物DBN9229中存在的插入DNA对应的等位基因为纯合的玉米种子所产生。In the amplification reaction, the biological sample containing template DNA contains DNA diagnostic for the presence of transgenic corn event DBN9229 in the sample. Alternatively, the amplification reaction will produce two different DNA amplicons from a biological sample containing DNA derived from a corn genome that is heterozygous for the allele corresponding to the inserted DNA present in transgenic corn event DBN9229. The two different amplicons will correspond to a first amplicon derived from a wild-type corn genomic locus (SEQ ID NO: 12 and SEQ ID NO: 14) and a second amplicon diagnostic for the presence of transgenic corn event DBN9229 DNA (SEQ ID NO: 12 and SEQ ID NO: 13). A corn DNA sample that produces only a single amplicon corresponding to the second amplicon described for a heterozygous genome can be diagnostic for the presence of transgenic corn event DBN9229 in the sample, and the sample is produced from corn seeds that are homozygous for the allele corresponding to the inserted DNA present in transgenic corn plant DBN9229.
需要说明的是,转基因玉米事件DBN9229的引物对被用于产生对转基因玉米事件DBN9229基因组DNA为诊断性的扩增子。这些引物对包括但不限于,引物7和8(SEQ
ID NO:8和9),和引物9和10(SEQ ID NO:10和11),用于所述的DNA扩增方法中。另外,用于扩增玉米内源基因的一个对照引物14和15(SEQ ID NO:25和26)被包括在内,其作为反应条件的一个内在标准。对转基因玉米事件DBN9229 DNA抽提样品的分析应该包括一个转基因玉米事件DBN9229的阳性组织DNA抽提物对照,一个来源于非转基因玉米事件DBN9229的阴性DNA抽提物对照和一个不含有模板玉米DNA抽提物的阴性对照。除了这些引物对之外,还可以使用来自SEQ ID NO:3或其互补序列、或者SEQ ID NO:4或其互补序列的任何引物对,当它们被用于DNA扩增反应时分别产生对于来源于转基因事件玉米植物DBN9229的组织为诊断性的包含SEQ ID NO:1或SEQ ID NO:2的扩增子。表2-表5中说明的DNA扩增条件可以用于使用合适的引物对以产生转基因玉米事件DBN9229的诊断性扩增子。当在DNA扩增方法中测试时产生对转基因玉米事件DBN9229为诊断性扩增子的、推定含有转基因玉米事件DBN9229的玉米植物或种子DNA的提取物,或来源于转基因玉米事件DBN9229的产物,可以被用作扩增的模板,来确定是否存在转基因玉米事件DBN9229。It should be noted that the primer pairs of transgenic corn event DBN9229 were used to generate an amplicon that is diagnostic for the genomic DNA of transgenic corn event DBN9229. These primer pairs include, but are not limited to, primers 7 and 8 (SEQ The invention relates to a method for amplifying a transgenic corn plant using a primer set comprising primers 14 and 15 (SEQ ID NOs: 25 and 26) for amplifying a corn endogenous gene. The method comprises a DNA amplification reaction of ... The DNA amplification conditions described in Tables 2-5 can be used to generate diagnostic amplicons for transgenic corn event DBN9229 using appropriate primer pairs. Extracts of corn plant or seed DNA that are presumed to contain transgenic corn event DBN9229, or products derived from transgenic corn event DBN9229, that produce amplicons that are diagnostic for transgenic corn event DBN9229 when tested in a DNA amplification method can be used as templates for amplification to determine the presence or absence of transgenic corn event DBN9229.
实施例4:利用Southern印迹杂交检测转基因玉米事件DBN9229Example 4: Detection of transgenic corn event DBN9229 using Southern blot hybridization
4.1、用于Southern印迹杂交的DNA提取4.1. DNA extraction for Southern blot hybridization
利用研钵和研杵,在液氮中研磨大约5-10g叶片组织。在20mL CTAB裂解缓冲液(100mM Tris-HCl pH 8.0、20mM EDTA pH 8.0、1.4M NaCl、0.2%v/vβ-疏基乙醇、2%w/v CTAB)中重悬浮4-5g研磨后的叶片组织,在温度65℃温育60min。在温育期间,每10min将样品颠倒混匀一次。温育后,加入等体积的苯酚/氯仿/异戊醇(25:24:1),轻轻颠倒混匀进行抽提,以转速4000rpm离心20min。取水相用等体积氯仿/异戊醇(24:1)重复抽提一次。再次收集水相后加入等体积异丙醇,混匀后在温度-20℃放置1h以沉淀DNA,再以转速4000rpm离心5min得到DNA沉淀,然后在1mL TE缓冲液(10mM Tris-HCl、1mM EDTA,pH 8.0)中重悬浮DNA沉淀。为了降解任何存在的RNA,在温度37℃下,将DNA和40μL浓度为10mg/mL RNase A温育30min,以4000rpm离心5min,并且在0.1倍体积浓度为3M醋酸钠(pH 5.2)和2倍体积无水乙醇存在的情况下,以转速12000rpm离心10min沉淀DNA。弃掉上清液后,用70%(v/v)的1mL乙醇洗涤沉淀,室温干燥后在1mL TE缓冲液中将DNA重新溶解。Grind approximately 5-10 g of leaf tissue in liquid nitrogen using a mortar and pestle. Resuspend 4-5 g of ground leaf tissue in 20 mL CTAB lysis buffer (100 mM Tris-HCl pH 8.0, 20 mM EDTA pH 8.0, 1.4 M NaCl, 0.2% v/v β-mercaptoethanol, 2% w/v CTAB) and incubate at 65°C for 60 min. During incubation, mix the sample by inversion every 10 min. After incubation, add an equal volume of phenol/chloroform/isoamyl alcohol (25:24:1), gently invert to mix, and centrifuge at 4000 rpm for 20 min. Repeat the extraction of the aqueous phase with an equal volume of chloroform/isoamyl alcohol (24:1). The aqueous phase was collected again and an equal volume of isopropanol was added. After mixing, the mixture was placed at -20°C for 1 hour to precipitate the DNA. The DNA was then centrifuged at 4000 rpm for 5 minutes to obtain a DNA precipitate, which was then resuspended in 1 mL TE buffer (10 mM Tris-HCl, 1 mM EDTA, pH 8.0). To degrade any RNA present, the DNA was incubated with 40 μL of 10 mg/mL RNase A at 37°C for 30 minutes, centrifuged at 4000 rpm for 5 minutes, and centrifuged at 12000 rpm for 10 minutes in the presence of 0.1 volume of 3 M sodium acetate (pH 5.2) and 2 volumes of anhydrous ethanol. After discarding the supernatant, the precipitate was washed with 1 mL of 70% (v/v) ethanol, dried at room temperature, and the DNA was redissolved in 1 mL TE buffer.
4.2、限制酶消化
4.2 Restriction enzyme digestion
用超微量分光光度计(NanoDrop 2000,Thermo Scientific)测定上述样品的基因组DNA浓度。The genomic DNA concentration of the above samples was measured using an ultra-micro spectrophotometer (NanoDrop 2000, Thermo Scientific).
在100μL反应体系中,每次消化5μg DNA,用限制性内切酶Nco I、Nhe I、Mfe I和Spe I分别消化基因组DNA,以T-DNA上Cry1Fa2基因、Cry2Ab2基因和pat基因的部分序列作为探针。对于每种酶,在适当的温度下过夜温育消化物。利用真空离心蒸发浓缩器(speed Vacuum,Thermo Scientific)旋转样品以减少体积至20μL。In a 100 μL reaction system, 5 μg of DNA was digested each time. Genomic DNA was digested with restriction endonucleases Nco I, Nhe I, Mfe I, and Spe I, respectively, using partial sequences of Cry1Fa2 gene, Cry2Ab2 gene, and pat gene on T-DNA as probes. For each enzyme, the digest was incubated overnight at the appropriate temperature. The sample was spun down to 20 μL using a speed Vacuum (Thermo Scientific).
4.3、凝胶电泳4.3 Gel electrophoresis
向来源于本实施例4.2中的每个样品添加溴酚蓝上样缓冲液,并且将每个样品加样到含有溴化乙锭的0.7% TAE琼脂糖凝胶上,在TAE电泳缓冲液(40mM Tris-醋酸、2mM EDTA,pH 8.5)中电泳分离,在电压20V下电泳凝胶过夜。Add bromophenol blue loading buffer to each sample from Example 4.2, and load each sample onto a 0.7% TAE agarose gel containing ethidium bromide, separate by electrophoresis in TAE electrophoresis buffer (40 mM Tris-acetate, 2 mM EDTA, pH 8.5), and run the gel at 20 V overnight.
电泳结束后,用0.25M HCl处理凝胶10min以使DNA脱嘌呤,然后分别用变性液(1.5M NaCl、0.5M NaOH)和中和液(1.5M NaCl、0.5M Tris-HCl,pH 7.2)处理凝胶各30min。在瓷盘中倒入5×SSC(3M NaCl、0.3M柠檬酸钠,pH 7.0),搭上一块玻璃板,然后依次放浸湿的滤纸桥、凝胶、带正电的尼龙膜(Roche,Cat.No.11417240001)、三张滤纸、纸塔、重物。在室温下转膜过夜后,在去离子水中漂洗尼龙膜2次,通过紫外交联仪(UVP,UV Crosslinker CL-1000)将DNA固定在膜上。After electrophoresis, the gel was treated with 0.25M HCl for 10 min to depurinate the DNA, and then the gel was treated with denaturing solution (1.5M NaCl, 0.5M NaOH) and neutralizing solution (1.5M NaCl, 0.5M Tris-HCl, pH 7.2) for 30 min each. 5×SSC (3M NaCl, 0.3M sodium citrate, pH 7.0) was poured into a porcelain dish, a glass plate was placed, and then a soaked filter paper bridge, gel, positively charged nylon membrane (Roche, Cat. No. 11417240001), three filter papers, paper tower, and weights were placed in sequence. After transferring the membrane overnight at room temperature, the nylon membrane was rinsed twice in deionized water, and the DNA was fixed on the membrane by UV crosslinker (UVP, UV Crosslinker CL-1000).
4.4、杂交4.4 Hybridization
用PCR扩增适合的DNA序列用于探针制备。所述DNA探针为SEQ ID NO:27、SEQ ID NO:28或SEQ ID NO:29,或者与上述序列部分同源或互补。用DNA Labeling and Detection Starter Kit II试剂盒(Roche,Cat.No.11585614910)进行探针的DIG标记、Southern印迹杂交、洗膜等操作,具体方法参考其产品说明书。最后用X光片(Roche,Cat.No.11666916001)检测探针结合的位置。Use PCR to amplify a suitable DNA sequence for probe preparation. The DNA probe is SEQ ID NO: 27, SEQ ID NO: 28 or SEQ ID NO: 29, or is partially homologous or complementary to the above sequence. Use DNA Labeling and Detection Starter Kit II (Roche, Cat. No. 11585614910) to perform DIG labeling, Southern blot hybridization, membrane washing and other operations of the probe. For specific methods, refer to its product manual. Finally, use X-ray film (Roche, Cat. No. 11666916001) to detect the position where the probe binds.
每个Southern上包括两种对照样品:(1)来自阴性(未转化的)分离子的DNA,其用于鉴定任何可与元件-特异性探针杂交的内源玉米序列;(2)来自阴性分离子的DNA,其中引入了Hind III-消化的DBN11815质粒,其量基于探针长度等价于一个拷贝数,其作为杂交的阳性对照并用于说明实验的灵敏度。Two control samples were included on each Southern run: (1) DNA from a negative (untransformed) segregant, which was used to identify any endogenous maize sequences that hybridized to the element-specific probe; and (2) DNA from a negative segregant into which Hind III-digested DBN11815 plasmid was introduced in an amount equivalent to one copy number based on probe length, which served as a positive control for hybridization and to illustrate the sensitivity of the experiment.
杂交数据提供了确证的证据支持TaqManTM PCR分析,即玉米植物DBN9229含有Cry1Fa2基因、Cry2Ab2基因和pat基因的单拷贝。利用该Cry1Fa2基因探针,Nco I和Nhe I酶解分别产生大小约8.0kb和8.5kb的单一条带;利用该Cry2Ab2基因探针,Mfe I和Spe I酶解分别产生大小约16kb和6.0kb的单一条带;利用该pat基因探针,Nco I
和Nhe I酶解分别产生大小约5.2kb和5.0kb的单一条带,这表明Cry1Fa2基因、Cry2Ab2基因和pat基因各一个拷贝存在于玉米植物DBN9229中。另外,对于骨架探针,未得到杂交条带,说明在转化过程中未有任何DBN11815载体骨架序列进入玉米植物DBN9229基因组中。The hybridization data provided conclusive evidence supporting the TaqMan ™ PCR analysis that the corn plant DBN9229 contained a single copy of the Cry1Fa2 gene, the Cry2Ab2 gene, and the pat gene. Using the Cry1Fa2 gene probe, Nco I and Nhe I digestions produced single bands of approximately 8.0 kb and 8.5 kb, respectively; using the Cry2Ab2 gene probe, Mfe I and Spe I digestions produced single bands of approximately 16 kb and 6.0 kb, respectively; using the pat gene probe, Nco I The digestion with Nhe I and Nhe I respectively produced single bands of about 5.2 kb and 5.0 kb, indicating that one copy of each of Cry1Fa2 gene, Cry2Ab2 gene and pat gene existed in the corn plant DBN9229. In addition, no hybridization bands were obtained for the backbone probe, indicating that no DBN11815 vector backbone sequence entered the genome of the corn plant DBN9229 during the transformation process.
实施例5:转基因玉米载体DBN11815的筛选Example 5: Screening of transgenic corn vector DBN11815
根据对本领域的基本认识,包含相同基因的不同载体设计对目标性状的表现会有不同影响。为获得最佳的目标性状表现,设计并构建了包括载体DBN11815在内的10个包含Cry1Fa2、Cry2Ab2和pat基因的表达载体。它们包含相同的目的基因,但目的基因的调控元件及表达盒的组合方式不同,包括调整Cry1Fa2、Cry2Ab2、pat基因表达盒的排列顺序;调整Cry2Ab2基因表达盒与Cry1Fa2、pat基因表达盒的连接方向;调整Cry2Ab2、pat基因表达盒内所使用的启动子和/或终止子;调整元件核骨架结合序列(eRB7)是否存在以及在表达盒中的位置。将上述10个不同的表达载体分别转育到玉米中,通过相同的试验方法进行生物测定、蛋白含量检测以及抗虫性稳定性评估,筛选得到最优载体DBN11815,用于产品开发。DBN11815载体的实验结果如下:According to the basic understanding of this field, different vector designs containing the same gene will have different effects on the performance of the target trait. In order to obtain the best performance of the target trait, 10 expression vectors containing Cry1Fa2, Cry2Ab2 and pat genes, including vector DBN11815, were designed and constructed. They contain the same target gene, but the combination of the regulatory elements and expression cassettes of the target gene is different, including adjusting the arrangement order of the Cry1Fa2, Cry2Ab2, and pat gene expression cassettes; adjusting the connection direction of the Cry2Ab2 gene expression cassette with the Cry1Fa2 and pat gene expression cassettes; adjusting the promoter and/or terminator used in the Cry2Ab2 and pat gene expression cassettes; adjusting the presence of the element nucleus skeleton binding sequence (eRB7) and its position in the expression cassette. The above 10 different expression vectors were respectively transferred into corn, and the same experimental methods were used for bioassay, protein content detection and insect resistance stability evaluation to screen the optimal vector DBN11815 for product development. The experimental results of the DBN11815 vector are as follows:
5.1、转基因玉米载体的生物测定5.1. Bioassay of transgenic maize vectors
将DBN11815载体的转基因玉米植株和野生型玉米植株(非转基因,NGM)分别对小地老虎(Agrotis ypsilon Rottemberg,BCW)、东方黏虫(Mythimna seperata,OAW)按照如下方法进行生物测定:The DBN11815 vector-transgenic maize plants and wild-type maize plants (non-transgenic, NGM) were subjected to bioassays against cutworms (Agrotis ypsilon Rottemberg, BCW) and oriental armyworms (Mythimna seperata, OAW) according to the following methods:
分别取DBN11815转基因玉米载体和野生型玉米植株(非转基因,NGM)的新鲜叶片(V3-V4时期),用无菌水冲洗干净并用纱布将叶片上的水吸干,然后将玉米叶片去除叶脉,同时剪成约1cm×3cm的长条状,取1-3片(根据昆虫食量确定叶片数量)剪后的长条状叶片放入圆形塑料培养皿底部的滤纸上,所述滤纸用蒸馏水润湿,每个培养皿中放10头人工饲养的初孵幼虫,虫试培养皿加盖后,在温度26-28℃、相对湿度70%-80%、光周期(光/暗)16:8的条件下放置3天后统计结果。统计幼虫发育进度、死亡率和叶片损伤率三项指标,获得抗性总分(满分300分):抗性总分=100×死亡率+[100×死亡率+90×(初孵虫数/接虫数)+60×(初孵-阴性对照虫数/接虫数)+10×(阴性对照虫数/接虫数)]+100×(1-叶片损伤率)。其中,接虫数是指接虫的数量,即每皿10头(视害虫的取食量而定);幼虫发育进度已通过抗性总分公式体现;叶片损伤率是指被害虫取食的叶片面积占叶片总面积的比例。选择DBN11815载体的3个转化事件,每个转化事
件与野生型玉米植株(非转基因,NGM)分别选5株长势一致的植株进行测试,每株重复3次。结果如表6所示。Fresh leaves (V3-V4 period) of DBN11815 transgenic corn carrier and wild-type corn plants (non-transgenic, NGM) were taken respectively, rinsed with sterile water and dried with gauze, then the veins of the corn leaves were removed and cut into strips of about 1 cm×3 cm, 1-3 leaves (the number of leaves was determined according to the insect food intake) were taken and placed on the filter paper at the bottom of a round plastic culture dish, the filter paper was moistened with distilled water, 10 artificially reared newly hatched larvae were placed in each culture dish, and the insect test culture dishes were covered and placed under the conditions of temperature 26-28°C, relative humidity 70%-80%, and photoperiod (light/dark) 16:8 for 3 days before the results were counted. The three indicators of larval development progress, mortality rate and leaf damage rate were counted to obtain the total resistance score (full score 300 points): total resistance score = 100 × mortality rate + [100 × mortality rate + 90 × (number of newly hatched insects/number of insects inoculated) + 60 × (number of newly hatched negative control insects/number of insects inoculated) + 10 × (number of negative control insects/number of insects inoculated)] + 100 × (1-leaf damage rate). Among them, the number of insects inoculated refers to the number of insects inoculated, that is, 10 per dish (depending on the feeding amount of the pests); the larval development progress has been reflected in the total resistance score formula; the leaf damage rate refers to the proportion of the leaf area eaten by the pests to the total leaf area. Three transformation events of the DBN11815 vector were selected, and each transformation event Five plants with the same growth vigour were selected from each of the two plants and the wild-type corn plant (non-transgenic, NGM) for testing, and each plant was repeated 3 times. The results are shown in Table 6.
表6、DBN11815转基因玉米载体的抗虫生物测定平均结果-死亡率(%)和抗性总分(分)
Table 6. Average results of insect resistance bioassay of DBN11815 transgenic corn vector - mortality (%) and total resistance score (points)
Table 6. Average results of insect resistance bioassay of DBN11815 transgenic corn vector - mortality (%) and total resistance score (points)
5.2、转基因玉米载体抗虫蛋白检测5.2. Detection of insect-resistant proteins in transgenic corn
将DBN11815转基因玉米载体植株和野生型玉米植株(非转基因,NGM),通过ELISA按照如下方法检测Cry2Ab2和Cry1Fa2蛋白在不同表达载体中的表达量:The DBN11815 transgenic corn carrier plants and wild-type corn plants (non-transgenic, NGM) were tested for the expression levels of Cry2Ab2 and Cry1Fa2 proteins in different expression vectors by ELISA according to the following method:
分别取DBN11815玉米载体植株和野生型玉米植株(非转基因,NGM)的新鲜叶片(V3时期),经冷冻干燥处理后,称取20mg进行液氮研磨,然后加入1mL萃取缓冲液(8g/L NaCl,0.27g/L KH2PO4,1.42g/L Na2HPO4,0.2g/L KCl,5.5ml/L Tween-20,pH7.4),混匀,4℃静置30分钟,12000g离心10分钟,取上清液用上述萃取缓冲液稀释至适当倍数,取80μl稀释后的上清液用于ELISA检测。Fresh leaves (V3 stage) of DBN11815 corn carrier plants and wild-type corn plants (non-transgenic, NGM) were taken respectively, and after freeze-drying, 20 mg was weighed and ground with liquid nitrogen, and then 1 mL of extraction buffer (8 g/L NaCl, 0.27 g/L KH 2 PO 4 , 1.42 g/L Na 2 HPO 4 , 0.2 g/L KCl, 5.5 ml/L Tween-20, pH 7.4) was added, mixed, allowed to stand at 4°C for 30 minutes, centrifuged at 12000 g for 10 minutes, and the supernatant was diluted to an appropriate multiple with the above extraction buffer, and 80 μl of the diluted supernatant was used for ELISA detection.
用ENVIROLOGIX公司的ELISA(酶联免疫吸附测定法)检测试剂盒:Cry2A试剂盒(AP005)和Cry1F试剂盒(AP016),对样品中蛋白质(Cry2Ab2蛋白,Cry1Fa2蛋白)含量占组织干重的比例进行检测分析,具体方法参考其产品说明书。同时以野生型玉米植株叶片(非转基因,NGM)作为对照,按照上述方法进行检测分析,DBN11815载体选3个转化事件,每个转化事件选4株植株,每株进行4次技术重复。结果如表7所示。The ELISA (enzyme-linked immunosorbent assay) detection kits of ENVIROLOGIX: Cry2A kit (AP005) and Cry1F kit (AP016) were used to detect and analyze the proportion of protein (Cry2Ab2 protein, Cry1Fa2 protein) content in the sample to the dry weight of the tissue. The specific method is referred to the product manual. At the same time, wild-type corn plant leaves (non-transgenic, NGM) were used as controls and detected and analyzed according to the above method. Three transformation events were selected for the DBN11815 vector, and four plants were selected for each transformation event. Four technical replicates were performed for each plant. The results are shown in Table 7.
表7、DBN11815转基因玉米载体收集的组织中的抗虫基因蛋白水平(μg/g DWT)测定平均结果
Table 7 Average results of determination of insect-resistant gene protein levels (μg/g DWT) in tissues collected from DBN11815 transgenic corn vectors
Table 7 Average results of determination of insect-resistant gene protein levels (μg/g DWT) in tissues collected from DBN11815 transgenic corn vectors
上述实施例5.1和5.2的结果表明:与非转基因对照植株、其它9个包含Cry1Fa2、Cry2Ab2和pat基因的表达载体相比,载体DBN11815具有最优的抗虫表现(小地老虎和东方黏虫)和蛋白表达量。
The results of Examples 5.1 and 5.2 above show that, compared with non-transgenic control plants and the other nine expression vectors containing Cry1Fa2, Cry2Ab2 and pat genes, vector DBN11815 has the best insect resistance (to small cutworms and oriental armyworms) and protein expression.
5.3、转基因玉米载体的抗虫性稳定性检测5.3. Stability test of insect resistance of transgenic corn vector
(1)对小地老虎抗虫稳定性检测(1) Testing the stability of anti-insect resistance of cutworms
将转基因玉米载体DBN11815的T2代植株(包括纯合和杂合型植株)以及野生型玉米植株(非转基因,NGM)对小地老虎(Agrotis ypsilon Rottemberg,BCW)进行生物测定,试验设计和试验方法与上述实施例5.1一致。以野生型玉米植株叶片(非转基因,NGM)作为对照,DBN11815载体选3个转化事件,每个转化事件选5株植株,每株重复3次。结果如表8所示。The T2 generation plants (including homozygous and heterozygous plants) of the transgenic corn vector DBN11815 and wild-type corn plants (non-transgenic, NGM) were subjected to bioassays against Agrotis ypsilon Rottemberg (BCW). The experimental design and experimental methods were consistent with those in Example 5.1 above. The leaves of wild-type corn plants (non-transgenic, NGM) were used as controls. Three transformation events were selected for the DBN11815 vector, and five plants were selected for each transformation event. Each plant was repeated three times. The results are shown in Table 8.
表8、转基因玉米载体DBN11815的T2代对小地老虎的抗性结果-死亡率(%)和抗性总分(分)
Table 8. Resistance results of the T2 generation of transgenic corn vector DBN11815 to black cutworms - mortality rate (%) and total resistance score (points)
Table 8. Resistance results of the T2 generation of transgenic corn vector DBN11815 to black cutworms - mortality rate (%) and total resistance score (points)
(2)对东方黏虫的抗虫稳定性检测(2) Stability test of the resistance to oriental armyworm
在上一个试验的基础上,继续评估T2代材料在高筛选压下的抗虫性稳定性。将转基因玉米载体DBN11815(转化事件1~3)以及野生型玉米植株(非转基因,NGM)对二龄东方黏虫(Mythimna seperata,OAW)按照如下方法进行生物测定:Based on the previous experiment, the insect resistance stability of T2 generation materials under high selection pressure was further evaluated. The transgenic corn vector DBN11815 (transformation events 1 to 3) and wild-type corn plants (non-transgenic, NGM) were bioassayed against the second-instar Oriental armyworm (Mythimna seperata, OAW) according to the following method:
取玉米植株新鲜叶片(V5-V6时期),用无菌水冲洗干净并用纱布将叶片上的水吸干,然后将玉米叶片去除叶脉,同时剪成约2.5cm×3cm的长条状,取3片剪后的长条状叶片放入24孔板单孔中,按此操作放满24孔板,各单孔放入1头人工饲养的二龄幼虫,虫试24孔板加盖后,在温度26-28℃、相对湿度70%-80%、光周期(光/暗)16:8的条件下放置7天后统计结果(其中,放置4天后,为避免叶片腐烂影响幼虫存活,需按照以上方法更换新鲜的叶片,不同之处为本次取6片长条状叶片放入24孔板中)。以野生型玉米植株叶片(非转基因,NGM)作为对照,转基因玉米载体DBN11815选择3个转化事件,每个转化事件选择18株植株长势一致的植株进行测试,其中每6株植株作为一个整体,分布到一个24孔板中,每个植株的叶片平均分配到4个孔。以一个24孔板计为1个重复,共设3个重复,统计死亡率。结果如表9所示。Take fresh leaves of corn plants (V5-V6 period), rinse them with sterile water and absorb the water on the leaves with gauze, then remove the veins of the corn leaves and cut them into strips of about 2.5 cm×3 cm, take 3 pieces of the cut strips and put them into a single hole of a 24-well plate, fill the 24-well plate in this way, put one artificially reared second-instar larvae in each single hole, cover the 24-well plate, place it at a temperature of 26-28°C, a relative humidity of 70%-80%, and a photoperiod (light/dark) of 16:8 for 7 days, and then count the results (among which, after 4 days, in order to avoid leaf rot affecting larval survival, fresh leaves need to be replaced according to the above method, the difference is that this time 6 strips of leaves are taken and placed in the 24-well plate). The wild-type corn plant leaves (non-transgenic, NGM) were used as controls, and three transformation events were selected for the transgenic corn vector DBN11815. For each transformation event, 18 plants with consistent growth were selected for testing, where every 6 plants were distributed as a whole to a 24-well plate, and the leaves of each plant were evenly distributed to 4 wells. One 24-well plate was counted as one replicate, and a total of 3 replicates were set to calculate the mortality rate. The results are shown in Table 9.
表9、转基因玉米载体DBN11815的T2代对二龄东方黏虫的抗性结果-死亡率(%)
Table 9. Resistance results of the T2 generation of transgenic corn vector DBN11815 to the second-instar oriental armyworm - mortality (%)
Table 9. Resistance results of the T2 generation of transgenic corn vector DBN11815 to the second-instar oriental armyworm - mortality (%)
实施例5.3的结果表明:与非转基因对照植株、其它9个包含Cry1Fa2、Cry2Ab2和pat基因的表达载体相比,转基因玉米载体DBN11815测试的3个转化事件,在转基因位点分别为杂合和纯合植株中,对小地老虎和二龄东方黏虫均具有良好的抗性,不同转化事件抗虫表现稳定。The results of Example 5.3 show that compared with non-transgenic control plants and the other nine expression vectors containing Cry1Fa2, Cry2Ab2 and pat genes, the three transformation events tested by the transgenic corn vector DBN11815 had good resistance to black cutworms and second-instar oriental armyworms in heterozygous and homozygous plants at the transgenic sites, and the insect resistance performance of different transformation events was stable.
经第五实施例综合评估测试,DBN11815抗虫生物测定、抗虫蛋白表达量以及在不同世代间抗虫稳定性上综合表现最优,选择表现优良的转化事件DBN9229,用于产品开发。After comprehensive evaluation and testing in the fifth embodiment, DBN11815 performed best in terms of insect resistance bioassay, insect resistance protein expression, and insect resistance stability among different generations. The transformation event DBN9229 with excellent performance was selected for product development.
实施例6.转基因玉米事件DBN9229事件的昆虫抗性检测Example 6. Insect resistance detection of transgenic corn event DBN9229
6.1、转基因玉米事件DBN9229在玉米自交系DBN567遗传背景下的生物测定6.1. Bioassay of transgenic maize event DBN9229 in the genetic background of maize inbred line DBN567
将来自优选的转基因玉米载体DBN11815中的转基因玉米事件DBN9229和野生型玉米植株(非转基因,NGM)2种植株分别对草地贪夜蛾(Spodoptera frugiperda,FAW)、东方黏虫(Mythimna seperata,OAW)、亚洲玉米螟(Ostrinia furnacalis,ACB)、棉铃虫(Helicoverpa armigera,CBW)、桃蛀螟(Conogethes punctiferalis,YPM)、斜纹夜蛾(Spodoptera litura,TCW)和小地老虎(Agrotis ypsilon Rottemberg,BCW)进行生物测定,试验设计和试验方法与上述实施例5.1一致。结果如表10所示。另外,还将转基因玉米事件DBN9229和实施例1中筛选到的其他转基因玉米植株进行了比较,试验设计和试验方法与上述实施例5.1一致,结果如表11和表12所示。The transgenic corn event DBN9229 from the preferred transgenic corn vector DBN11815 and the wild-type corn plant (non-transgenic, NGM) were subjected to bioassays against Spodoptera frugiperda (FAW), Mythimna seperata (OAW), Ostrinia furnacalis (ACB), Helicoverpa armigera (CBW), Conogethes punctiferalis (YPM), Spodoptera litura (TCW) and Agrotis ypsilon Rottemberg (BCW), respectively. The experimental design and experimental methods were consistent with those in Example 5.1 above. The results are shown in Table 10. In addition, the transgenic corn event DBN9229 was compared with other transgenic corn plants screened in Example 1. The experimental design and experimental methods were consistent with those in Example 5.1 above. The results are shown in Table 11 and Table 12.
表10、转基因玉米事件DBN9229叶片组织的抗虫生物测定结果-死亡率(%)和抗性总分(分)
Table 10. Insect resistance bioassay results of leaf tissue of transgenic corn event DBN9229 - mortality (%) and total resistance score (points)
Table 10. Insect resistance bioassay results of leaf tissue of transgenic corn event DBN9229 - mortality (%) and total resistance score (points)
表11、不同转基因玉米事件抗虫(BCW)生物测定的比较-死亡率
Table 11. Comparison of insect resistance (BCW) bioassays of different GM maize events - mortality
Table 11. Comparison of insect resistance (BCW) bioassays of different GM maize events - mortality
表12、不同转基因玉米事件抗虫(BCW)生物测定的比较-抗性总分
Table 12. Comparison of insect resistance (BCW) bioassays for different transgenic maize events - Total resistance score
Table 12. Comparison of insect resistance (BCW) bioassays for different transgenic maize events - Total resistance score
结果表明:转基因玉米事件DBN9229受体背景叶片组织对草地贪夜蛾、东方黏虫、亚洲玉米螟、棉铃虫、桃蛀螟、斜纹夜蛾和小地老虎均具有较好的抗性,且转基因玉米事件DBN9229的试虫死亡率和抗性总分均显著高于NGM,其中,食用了转基因玉米事件DBN9229的昆虫的死亡率几乎全部达到了100%。并且,转基因玉米事件DBN9229的抗虫的死亡率和抗性总分显著高于实施例1中筛选到的其他转基因玉米植株。The results showed that the leaf tissue of the transgenic corn event DBN9229 receptor background had good resistance to fall armyworm, oriental armyworm, Asian corn borer, cotton bollworm, peach borer, Spodoptera litura and black cutworm, and the test insect mortality rate and total resistance score of the transgenic corn event DBN9229 were significantly higher than those of NGM, among which the mortality rate of insects that ate the transgenic corn event DBN9229 almost all reached 100%. In addition, the insect resistance mortality rate and total resistance score of the transgenic corn event DBN9229 were significantly higher than those of other transgenic corn plants screened in Example 1.
6.2、转基因玉米事件DBN9229在不同遗传背景下的生物测定6.2 Bioassay of transgenic maize event DBN9229 in different genetic backgrounds
通过回交方式,将转基因玉米事件DBN9229导入两个遗传差异较大的玉米自交系,MLA05和MLB07,世代为BC4F3。在新的遗传背景下评估玉米事件DBN9229的抗虫表现。将转基因玉米事件DBN9229和野生型玉米植株(非转基因,NGM)2种植株分别对草地贪夜蛾(Spodoptera frugiperda,FAW)、东方黏虫(Mythimna seperata,OAW)和亚洲玉米螟(Ostrinia furnacalis,ACB)进行生物测定,试验设计和试验方法与上述实施例5.1一致。结果如表13所示。The transgenic corn event DBN9229 was introduced into two genetically different corn inbred lines, MLA05 and MLB07, by backcrossing, and the generation was BC4F3. The insect resistance performance of corn event DBN9229 was evaluated under the new genetic background. The transgenic corn event DBN9229 and wild-type corn plants (non-transgenic, NGM) were bioassayed against fall armyworm (Spodoptera frugiperda, FAW), oriental armyworm (Mythimna seperata, OAW) and Asian corn borer (Ostrinia furnacalis, ACB), respectively. The experimental design and experimental methods were consistent with the above-mentioned Example 5.1. The results are shown in Table 13.
表13、转基因玉米事件DBN9229叶片组织的抗虫生物测定结果-死亡率(%)及抗性总分(分)
Table 13. Insect resistance bioassay results of leaf tissue of transgenic corn event DBN9229 - mortality (%) and total resistance score (points)
Table 13. Insect resistance bioassay results of leaf tissue of transgenic corn event DBN9229 - mortality (%) and total resistance score (points)
结果表明:转基因玉米事件DBN9229不同遗传背景叶片组织对草地贪夜蛾、东方黏虫和亚洲玉米螟均具有较好的抗性,且转基因玉米事件DBN9229的试虫死亡率和抗性总分均显著高于NGM。其中,食用了转基因玉米事件DBN9229不同遗传背景叶片组织的昆虫的死亡率几乎全部达到了100%。The results showed that the leaf tissues of transgenic corn event DBN9229 with different genetic backgrounds had good resistance to fall armyworm, oriental armyworm and Asian corn borer, and the mortality rate and total resistance score of transgenic corn event DBN9229 were significantly higher than those of NGM. Among them, the mortality rate of insects that ate leaf tissues of transgenic corn event DBN9229 with different genetic backgrounds almost reached 100%.
6.3、转基因玉米事件DBN9229在玉米杂交种MZ003遗传背景下的生物测定6.3 Bioassay of transgenic maize event DBN9229 in the genetic background of maize hybrid MZ003
将转基因玉米事件DBN9229与常规非转基因玉米自交系MLT05杂交,获得转基因玉米杂交种MZ003,在杂交种背景下评估玉米事件DBN9229的抗虫表现。The transgenic maize event DBN9229 was crossed with the conventional non-transgenic maize inbred line MLT05 to obtain the transgenic maize hybrid MZ003. The insect resistance performance of the maize event DBN9229 was evaluated in the hybrid background.
(1)转基因玉米事件DBN9229的杂交种MZ003叶片组织的生物测定(1) Bioassay of leaf tissue of hybrid MZ003 of transgenic maize event DBN9229
将包含玉米事件DBN9229的杂交种MZ003和常规玉米杂交种MZ003(非转基因,NGM)两种植株分别对草地贪夜蛾(Spodoptera frugiperda,FAW)和东方黏虫(Mythimna seperata,OAW)进行生物测定,试验设计和试验方法与上述实施例5.1一致。结果如表14所示。Hybrid MZ003 containing corn event DBN9229 and conventional corn hybrid MZ003 (non-transgenic, NGM) were subjected to bioassays against fall armyworm (Spodoptera frugiperda, FAW) and oriental armyworm (Mythimna seperata, OAW), respectively, and the experimental design and experimental methods were consistent with the above-mentioned Example 5.1. The results are shown in Table 14.
表14、转基因玉米事件DBN9229叶片组织的抗虫生物测定结果-死亡率(%)和抗性总分(分)
Table 14. Insect resistance bioassay results of leaf tissue of transgenic corn event DBN9229 - mortality (%) and total resistance score (points)
Table 14. Insect resistance bioassay results of leaf tissue of transgenic corn event DBN9229 - mortality (%) and total resistance score (points)
结果表明:转基因玉米事件DBN9229的杂交种MZ003叶片组织对草地贪夜蛾和东方黏虫均具有较好的抗性,且转基因玉米事件DBN9229的试虫死亡率和抗性总分均显著高于NGM。其中,食用了转基因玉米事件DBN9229的杂交种MZ003叶片组织的昆虫的死亡率全部达到了100%。The results showed that the leaf tissues of the hybrid MZ003 of the transgenic corn event DBN9229 had good resistance to both fall armyworm and oriental armyworm, and the mortality rate and total resistance score of the transgenic corn event DBN9229 were significantly higher than those of NGM. Among them, the mortality rate of insects that ate the leaf tissues of the hybrid MZ003 of the transgenic corn event DBN9229 reached 100%.
(2)转基因玉米事件DBN9229的杂交种MZ003在田间的抗虫效果(2) The insect resistance of the hybrid MZ003 of the transgenic corn event DBN9229 in the field
将包含玉米事件DBN9229的杂交种MZ003和常规玉米杂交种MZ003(非转基因,NGM)两种植株的种子按随机区组设计种植,3次重复,每个重复的小区面积为30m2(5m×6m),行距60cm,株距25cm,常规栽培管理,全生育期不喷施杀虫剂。不同昆虫试验小区之间有2m的间隔,避免昆虫在不同小区之间的扩散。The seeds of hybrid MZ003 containing corn event DBN9229 and conventional corn hybrid MZ003 (non-transgenic, NGM) were planted in a randomized block design with 3 replicates. The area of each replicate was 30m2 (5m×6m), with a row spacing of 60cm and a plant spacing of 25cm. Conventional cultivation management was used and no pesticides were sprayed during the entire growth period. There was a 2m interval between different insect test plots to prevent the spread of insects between different plots.
(a)棉铃虫(a) Cotton bollworm
在玉米吐丝期进行人工接虫,共接虫2次,每小区人工接虫植株数不少于40株,在每株玉米花丝中接人工饲养的初孵幼虫约20头。初次接虫3天后,进行第二次接虫,接虫数量同第一次。在接虫14-21天后,逐株调查雌穗被害率、每个雌穗存活幼虫数和雌
穗被害长度。通常接虫后14天开始调查,若此时NGM的为害级别达到感或高感,则视为有效,若没有达到可适当推迟调查,但若接虫后21天NGM的为害仍未达到相应级别,则本次接虫视为无效。根据雌穗被害率、存活幼虫数、雌穗被害长度(cm),计算各小区玉米穗期棉铃虫对雌穗的为害级别平均值,判断标准如表15所示,然后按表16的标准判别玉米穗期对棉铃虫的抗性水平。转基因玉米事件DBN9229吐丝期对棉铃虫的抗性结果如表17所示。Artificial inoculation was carried out during the silking period of corn, with a total of 2 inoculations. The number of artificially inoculated plants in each plot was no less than 40, and about 20 artificially reared newly hatched larvae were inoculated in the silk of each corn plant. Three days after the first inoculation, the second inoculation was carried out, with the same number of insects as the first. 14-21 days after inoculation, the damage rate of female ears, the number of surviving larvae per female ear, and the number of female ears were investigated plant by plant. Damaged length of ear. Usually the investigation starts 14 days after inoculation. If the damage level of NGM reaches susceptible or highly susceptible at this time, it is considered effective. If not, the investigation can be appropriately postponed. However, if the damage of NGM still does not reach the corresponding level 21 days after inoculation, the inoculation is considered invalid. According to the damage rate of female ears, the number of surviving larvae, and the damaged length of female ears (cm), the average damage level of cotton bollworm to female ears at the corn ear stage in each plot is calculated. The judgment criteria are shown in Table 15, and then the resistance level of corn ear stage to cotton bollworm is judged according to the standards in Table 16. The resistance results of transgenic corn event DBN9229 to cotton bollworm at the silking stage are shown in Table 17.
表15、玉米雌穗受棉铃虫为害程度的分级标准
Table 15. Grading standards for the degree of damage caused by cotton bollworms on corn ears
Table 15. Grading standards for the degree of damage caused by cotton bollworms on corn ears
表16、玉米雌穗对棉铃虫的抗性评价标准
Table 16. Evaluation criteria for resistance of corn ears to cotton bollworm
Table 16. Evaluation criteria for resistance of corn ears to cotton bollworm
表17、转基因玉米事件DBN9229雌穗对棉铃虫的抗性结果
Table 17. Resistance results of transgenic corn event DBN9229 female ears to cotton bollworm
Table 17. Resistance results of transgenic corn event DBN9229 female ears to cotton bollworm
结果表明:在人工接种的条件下,转基因玉米事件DBN9229对棉铃虫表现高抗水平,而对照玉米植株则较容易受到虫害。转基因玉米事件DBN9229对棉铃虫的被害级别显著低于非转基因玉米(NGM),低了至少3个级别。The results showed that under artificial inoculation conditions, the transgenic corn event DBN9229 showed a high level of resistance to cotton bollworm, while the control corn plants were more susceptible to insect infestation. The damage level of the transgenic corn event DBN9229 to cotton bollworm was significantly lower than that of non-transgenic corn (NGM), at least 3 levels lower.
(b)亚洲玉米螟(b) Asian corn borer
试验方法与上述评价棉铃虫抗性一致。不同的是,根据雌穗被害情况、蛀孔数量、蛀孔隧道长度(cm)以及存活幼虫龄期和存活数量,计算各小区玉米穗期亚洲玉米螟对雌穗的抗性被害级别平均值,判断标准如表18所示,然后按表19的标准判别玉米穗期对亚洲玉米螟的抗性水平。转基因玉米事件DBN9229吐丝期对亚洲玉米螟的抗性结果如表20所示。
The test method is consistent with the above evaluation of cotton bollworm resistance. The difference is that the average value of the damage level of resistance to the female ear of the corn ear of each plot is calculated based on the damage to the female ear, the number of boreholes, the length of the borehole tunnel (cm), the age and number of surviving larvae, and the judgment criteria are shown in Table 18. Then, the resistance level to the Asian corn borer at the corn ear stage is judged according to the standards in Table 19. The resistance results of the transgenic corn event DBN9229 to the Asian corn borer at the silking stage are shown in Table 20.
表18、玉米雌穗受亚洲玉米螟为害程度的分级标准
Table 18. Grading standards for the degree of damage to corn ears caused by the Asian corn borer
Table 18. Grading standards for the degree of damage to corn ears caused by the Asian corn borer
表19、玉米雌穗对亚洲玉米螟的抗性评价标准
Table 19. Evaluation criteria for resistance of corn ears to Ostrinia furnacalis
Table 19. Evaluation criteria for resistance of corn ears to Ostrinia furnacalis
表20、转基因玉米事件DBN9229雌穗对亚洲玉米螟的抗性结果
Table 20. Resistance results of transgenic corn event DBN9229 female ears to Asian corn borer
Table 20. Resistance results of transgenic corn event DBN9229 female ears to Asian corn borer
结果表明:在人工接种的条件下,转基因玉米事件DBN9229对亚洲玉米螟表现高抗水平,而对照玉米植株则较容易受到虫害。转基因玉米事件DBN9229对亚洲玉米螟的被害级别显著低于非转基因玉米(NGM),低了至少3个级别。The results showed that under artificial inoculation conditions, the transgenic corn event DBN9229 showed a high level of resistance to the Asian corn borer, while the control corn plants were more susceptible to the insect. The damage level of the transgenic corn event DBN9229 to the Asian corn borer was significantly lower than that of non-transgenic corn (NGM), at least 3 levels lower.
(c)草地贪夜蛾(c) Fall Armyworm
试验方法不同于以上棉铃虫和亚洲玉米螟,草地贪夜蛾为田间自然感虫条件下评估。在草地贪夜蛾发生较为严重的地区对转基因玉米事件DBN9229进行自然条件下的田间抗虫测试。在小喇叭口期左右评估叶片组织,发生虫害10-15天后,且NGM多为5-6龄高龄幼虫危害时,逐株调查草地贪夜蛾对玉米叶片为害情况,计算各重复草地贪夜蛾对玉米叶片为害级别的平均值,其判断标准如表21所示,然后按表22的标准判别玉米小喇叭口期叶片对草地贪夜蛾的抗性水平。转基因玉米事件DBN9229小喇叭口期对草地贪夜蛾的抗性结果如表23所示。The test method is different from that for cotton bollworm and Asian corn borer mentioned above. Fall armyworm is evaluated under natural field conditions. Field insect resistance tests were conducted on the transgenic corn event DBN9229 under natural conditions in areas where fall armyworm is more serious. Leaf tissue was evaluated around the trumpet stage. 10-15 days after the occurrence of insect infestation, and when NGM was mostly 5-6-year-old larvae, the damage of fall armyworm to corn leaves was investigated plant by plant, and the average value of the damage level of fall armyworm to corn leaves in each replicate was calculated. The judgment criteria are shown in Table 21, and then the resistance level of corn leaves to fall armyworm in the trumpet stage was judged according to the standards in Table 22. The resistance results of transgenic corn event DBN9229 to fall armyworm in the trumpet stage are shown in Table 23.
表21、玉米叶片受草地贪夜蛾为害程度的分级标准
Table 21. Grading standards for the degree of damage to corn leaves by fall armyworm
Table 21. Grading standards for the degree of damage to corn leaves by fall armyworm
表22、玉米叶片对草地贪夜蛾的抗性评价标准
Table 22. Evaluation criteria for corn leaf resistance to fall armyworm
Table 22. Evaluation criteria for corn leaf resistance to fall armyworm
表23、转基因玉米事件DBN9229自然感虫条件下叶片组织对草地贪夜蛾的抗性结果
Table 23. Resistance results of leaf tissues of transgenic corn event DBN9229 to fall armyworm under natural insect-infected conditions
Table 23. Resistance results of leaf tissues of transgenic corn event DBN9229 to fall armyworm under natural insect-infected conditions
结果表明:在草地贪夜蛾自然发生条件下,转基因玉米事件DBN9229对草地贪夜蛾具有较好的抗性水平,而对照玉米植株则受到了严重的虫害。转基因玉米事件DBN9229叶片组织对草地贪夜蛾的被害级别显著低于非转基因玉米(NGM)。The results showed that under the natural occurrence of fall armyworm, the transgenic corn event DBN9229 had a good resistance level to fall armyworm, while the control corn plants were seriously damaged. The damage level of leaf tissue of transgenic corn event DBN9229 to fall armyworm was significantly lower than that of non-transgenic corn (NGM).
6.4、转基因玉米事件DBN9229×DBN9501×DBN9936的生物测定及应用评估6.4 Bioassay and application evaluation of transgenic maize event DBN9229×DBN9501×DBN9936
将转基因玉米事件DBN9229与DBN9936(CN104830847B)和DBN9501(CN109868273B)进行遗传整合,导入到同一个玉米植株中。具体为,首先将转基因玉米事件DBN9936与转基因玉米事件DBN9501杂交,获得叠加转基因玉米事件DBN9501×DBN9936的杂合植株,然后经过两代自交,并通过TaqMan检测目标基因拷贝数(参考第二实施例)和PCR接合性检测位点的纯杂合(参考第三实施例),获得叠加转基因玉米事件DBN9501×DBN9936纯合植株,将其作为父本与转基因玉米事件DBN9229(母本)杂交,获得叠加转基因玉米事件DBN9229×DBN9501×DBN9936。The transgenic corn event DBN9229 was genetically integrated with DBN9936 (CN104830847B) and DBN9501 (CN109868273B) and introduced into the same corn plant. Specifically, the transgenic corn event DBN9936 was first hybridized with the transgenic corn event DBN9501 to obtain a heterozygous plant of the stacked transgenic corn event DBN9501×DBN9936, and then after two generations of self-pollination, the number of target gene copies was detected by TaqMan (refer to the second embodiment) and the pure heterozygosity of the PCR zygosity detection site was detected (refer to the third embodiment), and the stacked transgenic corn event DBN9501×DBN9936 homozygous plant was obtained, which was used as the male parent to hybridize with the transgenic corn event DBN9229 (female parent) to obtain the stacked transgenic corn event DBN9229×DBN9501×DBN9936.
本领域的技术人员应当知晓,除上述示例外,还有其他多种杂交组合方式可以将转
基因玉米事件DBN9229、DBN9501和DBN9936导入到同一个玉米植株中。Those skilled in the art will appreciate that, in addition to the above examples, there are many other hybridization combinations that can be used to Genetic maize events DBN9229, DBN9501 and DBN9936 were introduced into the same maize plant.
(1)转基因玉米事件DBN9229×DBN9501×DBN9936对草地贪夜蛾抗性检测(1) Detection of resistance of transgenic corn event DBN9229×DBN9501×DBN9936 to fall armyworm
(a)转基因玉米事件DBN9229×DBN9501×DBN9936叶片组织的生物测定(a) Bioassay of leaf tissue of transgenic maize event DBN9229×DBN9501×DBN9936
将转基因玉米事件DBN9229×DBN9501×DBN9936和野生型玉米植株(非转基因,NGM)2种植株对草地贪夜蛾(Spodoptera frugiperda,FAW)进行生物测定,试验设计和试验方法与上述实施例5.1的评价一致。结果如表24示。The transgenic maize event DBN9229×DBN9501×DBN9936 and the wild-type maize plant (non-transgenic, NGM) were subjected to bioassay against fall armyworm (Spodoptera frugiperda, FAW), and the experimental design and experimental method were consistent with the evaluation of Example 5.1 above. The results are shown in Table 24.
表24、转基因玉米事件DBN9229×DBN9501×DBN9936叶片组织对初孵草地贪夜蛾的抗性结果-死亡率(%)和抗性总分(分)
Table 24. Resistance results of leaf tissues of transgenic corn events DBN9229×DBN9501×DBN9936 to newly hatched fall armyworm - mortality (%) and total resistance score (points)
Table 24. Resistance results of leaf tissues of transgenic corn events DBN9229×DBN9501×DBN9936 to newly hatched fall armyworm - mortality (%) and total resistance score (points)
结果表明:转基因玉米事件DBN9229×DBN9501×DBN9936杂交种背景叶片组织对草地贪夜蛾具有较好的抗性,抗虫测定中的昆虫死亡率达到了100%,且转基因玉米事件DBN9229×DBN9501×DBN9936的试虫死亡率和抗性总分均显著高于非转基因玉米(NGM)。The results showed that the leaf tissue of the hybrid background of the transgenic corn event DBN9229×DBN9501×DBN9936 had good resistance to the fall armyworm, and the insect mortality rate in the insect resistance assay reached 100%. In addition, the test insect mortality rate and total resistance score of the transgenic corn event DBN9229×DBN9501×DBN9936 were significantly higher than those of non-transgenic corn (NGM).
(b)转基因玉米事件DBN9229×DBN9501×DBN9936田间效果(b) Field effects of transgenic corn event DBN9229×DBN9501×DBN9936
试验设计和试验方法与上述的实施例6.3(2)(c)草地贪夜蛾评估一致,且判断标准如上表21所示,抗性评价标准如上表22所示。转基因玉米事件DBN9229×DBN9501×DBN9936小喇叭口期对草地贪夜蛾的抗性结果如表25所示。The experimental design and experimental methods are consistent with the above Example 6.3 (2) (c) evaluation of fall armyworm, and the judgment criteria are shown in Table 21 above, and the resistance evaluation criteria are shown in Table 22 above. The results of the resistance of transgenic corn event DBN9229×DBN9501×DBN9936 to fall armyworm at the trumpet stage are shown in Table 25.
表25、转基因玉米事件DBN9229×DBN9501×DBN9936自然感虫条件下叶片组织对草地贪夜蛾的抗性结果
Table 25. Resistance results of leaf tissues of transgenic corn event DBN9229×DBN9501×DBN9936 to fall armyworm under natural insect-infected conditions
Table 25. Resistance results of leaf tissues of transgenic corn event DBN9229×DBN9501×DBN9936 to fall armyworm under natural insect-infected conditions
结果表明:在草地贪夜蛾自然发生条件下,转基因玉米事件DBN9229×DBN9501×DBN9936对草地贪夜蛾具有较好的抗性水平,且转基因玉米事件DBN9229×DBN9501×DBN9936叶片组织被害级别显著低于非转基因玉米(NGM)。The results showed that under the natural occurrence conditions of fall armyworm, the transgenic corn event DBN9229×DBN9501×DBN9936 had a good level of resistance to fall armyworm, and the leaf tissue damage level of the transgenic corn event DBN9229×DBN9501×DBN9936 was significantly lower than that of non-transgenic corn (NGM).
(2)转基因玉米事件DBN9229×DBN9501×DBN9936产量和品质评估(2) Yield and quality evaluation of transgenic corn event DBN9229×DBN9501×DBN9936
遗传叠加的转基因玉米DBN9229×DBN9501×DBN9936对亚洲玉米螟具有多个抗虫机制。可进一步减少实际生产中要求的抗虫庇护所的比例,更好的保护生产效益并延缓
抗性发生。将转基因玉米事件DBN9229×DBN9501×DBN9936(多抗虫机制,5%庇护所混种)和DBN9936(单一抗虫机制,20%庇护所条播)在亚洲玉米螟自然发生较为严重的地区进行评估。试验设计为每处理种植20行,行长9m,行距60cm,株距28cm,常规栽培管理。根据NY/T 1611-2017玉米螟测报技术规范,调查亚洲玉米螟发生代数、各代发生级别、为害率(为害率=被害虫取食的玉米植株数量/总植株数量×100%)。计算每个小区的玉米产量为各小区的玉米籽粒总产量(重量),不同产品的产量差异以产量百分率的形式进行度量,产量百分率(%)=DBN9229×DBN9501×DBN9936(5%庇护所混种)/DBN9936(20%庇护所条播)×100%。产量百分比结果如表26所示。并且计算各小区发霉果穗比率,仅统计由亚洲玉米螟导致的发霉果穗(发霉果穗比率=发霉果穗数/总植株数量×100%)。不同产品的发霉果穗比率如表26所示。The genetically stacked transgenic corn DBN9229×DBN9501×DBN9936 has multiple insect resistance mechanisms against Asian corn borer. It can further reduce the proportion of insect-resistant shelters required in actual production, better protect production benefits and delay Resistance occurs. The transgenic maize events DBN9229×DBN9501×DBN9936 (multiple insect resistance mechanisms, 5% shelter mixed planting) and DBN9936 (single insect resistance mechanism, 20% shelter drill planting) were evaluated in areas where the natural occurrence of Asian corn borer is more serious. The experimental design was to plant 20 rows per treatment, with a row length of 9m, a row spacing of 60cm, and a plant spacing of 28cm, and conventional cultivation management. According to the NY/T 1611-2017 Technical Specification for Corn Borer Monitoring and Forecasting, the number of generations of Asian corn borer, the occurrence level of each generation, and the damage rate (damage rate = number of corn plants eaten by pests/total number of plants × 100%) were investigated. The corn yield of each plot was calculated as the total corn kernel yield (weight) of each plot, and the yield difference of different products was measured in the form of yield percentage, yield percentage (%) = DBN9229 × DBN9501 × DBN9936 (5% shelter mixed planting) / DBN9936 (20% shelter drill sowing) × 100%. The yield percentage results are shown in Table 26. The moldy ear ratio of each plot was also calculated, and only the moldy ears caused by Asian corn borer were counted (moldy ear ratio = number of moldy ears/total number of plants × 100%). The moldy ear ratios of different products are shown in Table 26.
调查发现,种植地区当年亚洲玉米螟发生两代,一代亚洲玉米螟危害率为57%,二代亚洲玉米螟百株活虫数为56头。前后两代亚洲玉米螟均为4级偏重发生级别。在该亚洲玉米螟自然发生较为严重的条件下,因玉米螟为害引起的果穗霉变率,DBN9229×DBN9501×DBN9936(多抗虫机制,5%庇护所混种)显著低于DBN9936(单一抗虫机制,20%庇护所条播),籽粒品质显著提升(表26)。同时产量方面表现略有提高(表26)。体现了遗传叠加DBN9229×DBN9501×DBN9936玉米转化事件在生产应用中的巨大价值。The investigation found that there were two generations of Asian corn borer in the planting area that year. The damage rate of the first generation of Asian corn borer was 57%, and the number of live worms per 100 plants of the second generation of Asian corn borer was 56. The two generations of Asian corn borer were both at the level of 4 heavy occurrence. Under the condition that the natural occurrence of Asian corn borer was relatively serious, the rate of ear mildew caused by corn borer damage was significantly lower in DBN9229×DBN9501×DBN9936 (multiple insect resistance mechanisms, 5% shelter mixed planting) than in DBN9936 (single insect resistance mechanism, 20% shelter drill sowing), and the grain quality was significantly improved (Table 26). At the same time, the yield performance was slightly improved (Table 26). It reflects the great value of the genetic superposition DBN9229×DBN9501×DBN9936 corn transformation event in production application.
表26、转基因玉米事件DBN9229×DBN9501×DBN9936对品质和产量的评估结果
Table 26. Evaluation results of transgenic corn event DBN9229×DBN9501×DBN9936 on quality and yield
Table 26. Evaluation results of transgenic corn event DBN9229×DBN9501×DBN9936 on quality and yield
实施例7.事件的除草剂耐受性评估Example 7. Herbicide tolerance evaluation of events
7.1、营养期损伤的耐受性及其稳定性评估7.1. Assessment of tolerance to damage during the vegetative period and its stability
对转基因玉米事件DBN9229的T3、T4和T5等世代的材料喷施草铵膦进行评估。试验选用保试达(Basta)除草剂(有效成分为18%的草铵膦铵盐水剂)进行喷施,保试达进行田间控草的推荐使用浓度是400g a.i./ha。各世代材料评估试验均对DBN9229进行以下两种除草剂处理:(1)按800g a.i./ha(a.i./ha是指“活性成分每公顷”)剂量在V3期喷施保试达除草剂;(2)不喷施除草剂,在处理(1)喷施除草剂的同时,喷施等体积的清水。每种处理均设置3个重复,每个重复2行(行长9m,行距60cm,株距
28cm)。并设置非转基因玉米(NGM)为平行对照。The T3, T4 and T5 generations of the transgenic corn event DBN9229 were evaluated by spraying glufosinate ammonium. The test used Basta herbicide (18% glufosinate ammonium salt solution as active ingredient) for spraying. The recommended concentration of Basta for field weed control is 400g ai/ha. In the evaluation test of each generation of materials, DBN9229 was treated with the following two herbicides: (1) Basta herbicide was sprayed at a dosage of 800g ai/ha (ai/ha means "active ingredient per hectare") at the V3 stage; (2) no herbicide was sprayed, and at the same time as the herbicide was sprayed in treatment (1), an equal volume of clean water was sprayed. Each treatment was set up with 3 replicates, and each replicate had 2 rows (row length 9m, row spacing 60cm, plant spacing Non-genetically modified corn (NGM) was used as a parallel control.
在用药后2周调查药害症状,药害症状分级如表27所示。用营养期受损评分作为评价转化事件除草剂耐受性的指标。营养期损伤主要指在草铵膦处理后短期内(几小时至十几天)造成的诸如叶片灼伤、畸形、枯萎等药害表现;具体地,营养期损伤评分=∑(同级受害株数×级别数)/(总株数×最高级别)×100;其中营养期损伤评分是根据草铵膦处理后2周的药害调查结果而确定的。需要说明的是,不同含量和剂型的草铵膦除草剂换算成上述等量有效成分草铵膦均适用于以下结论。转基因玉米事件DBN9229对草铵膦除草剂耐受性结果如表28所示。The phytotoxicity symptoms were investigated 2 weeks after the application of the drug, and the phytotoxicity symptom classification is shown in Table 27. The vegetative damage score is used as an indicator to evaluate the herbicide tolerance of the transformation event. Vegetative damage mainly refers to the phytotoxicity manifestations such as leaf burns, deformities, and wilting caused in a short period of time (several hours to more than ten days) after the glufosinate treatment; specifically, the vegetative damage score = ∑ (number of affected plants at the same level × number of levels) / (total number of plants × highest level) × 100; the vegetative damage score is determined based on the phytotoxicity investigation results 2 weeks after the glufosinate treatment. It should be noted that the conversion of glufosinate herbicides of different contents and dosage forms into the above-mentioned equivalent amount of the active ingredient glufosinate is applicable to the following conclusions. The results of the tolerance of the transgenic corn event DBN9229 to glufosinate herbicides are shown in Table 28.
表27、草铵膦除草剂对玉米营养期损伤程度的分级标准
Table 27. Grading standards for the degree of damage caused by glufosinate herbicides to corn during the vegetative period
Table 27. Grading standards for the degree of damage caused by glufosinate herbicides to corn during the vegetative period
表28、转基因玉米事件DBN9229对草铵膦除草剂耐受性的结果
Table 28. Results of tolerance of transgenic corn event DBN9229 to glufosinate herbicide
Table 28. Results of tolerance of transgenic corn event DBN9229 to glufosinate herbicide
结果表明:在不同世代中,转基因玉米事件DBN9229在草铵膦除草剂(800g a.i./ha)处理下营养期损伤评分均为0。由此,转基因玉米事件DBN9229具有良好的草铵膦除草剂耐受性,并且在不同世代间表现稳定。The results showed that in different generations, the damage score of the transgenic corn event DBN9229 during the vegetative period under the treatment of glufosinate herbicide (800 g a.i./ha) was 0. Therefore, the transgenic corn event DBN9229 has good tolerance to glufosinate herbicide and is stable among different generations.
7.2、对产量影响的评估7.2. Assessment of impact on production
本试验在三个不同环境(A:吉林长春市;B:河北唐山市;C:山东济南市)进行,各环境中对转基因玉米事件DBN9229均进行以下两种处理:(1)草铵膦药剂处理:按800g a.i./ha(a.i./ha是指“活性成分每公顷”)剂量在V3期对玉米DBN9229植株喷洒保试达除草剂(2)对照药剂处理:(有效成分为30%的苯唑草酮)+莠去津除草剂混合处理;具体操作为,按25g a.i./ha剂量的与按945g a.i./ha剂量的莠去
津除草剂混配,将混配后的除草剂在V3期喷洒玉米DBN9229植株。每种处理均设置6个重复。每个重复小区面积为21.6m2(9m×2.4m),行距60cm,株距28cm,常规栽培管理。The experiment was conducted in three different environments (A: Changchun, Jilin; B: Tangshan, Hebei; C: Jinan, Shandong). In each environment, the transgenic maize event DBN9229 was subjected to the following two treatments: (1) glufosinate treatment: maize DBN9229 plants were sprayed with the herbicide Glufosinate at a dosage of 800 g ai/ha (ai/ha means "active ingredient per hectare") at the V3 stage; (2) control treatment: (with an active ingredient of 30% benzathine) + atrazine herbicide mixed treatment; the specific operation is to use 25g ai/ha and atrazine at a dose of 945 g ai/ha Tianjin herbicide was mixed and sprayed on corn DBN9229 plants at V3 stage. Six replicates were set for each treatment. The area of each replicate plot was 21.6m2 (9m×2.4m), with a row spacing of 60cm and a plant spacing of 28cm, and conventional cultivation management was used.
每个小区的玉米产量为各小区的玉米籽粒总产量(重量),不同处理间的产量差异以产量百分率的形式进行度量,产量百分率=喷施草铵膦小区产量/喷施+莠去津小区产量×100%。产量百分率结果如表29所示。The corn yield of each plot is the total corn grain yield (weight) of each plot. The yield difference between different treatments is measured in the form of yield percentage, yield percentage = yield of the plot sprayed with glufosinate/sprayed + atrazine plot yield × 100%. The yield percentage results are shown in Table 29.
表29、转基因玉米事件DBN9229玉米产量结果
Table 29. Corn yield results of transgenic corn event DBN9229
Table 29. Corn yield results of transgenic corn event DBN9229
结果显示,在不同环境下,转基因玉米事件DBN9229喷施苞卫除草剂(25g a.i./ha)+莠去津除草剂(945g a.i./ha)和喷施草铵膦除草剂(800g a.i./ha)两种处理下的产量没有明显差异,由此,进一步表明转基因玉米事件DBN9229具有良好的草铵膦耐受性。The results showed that under different environments, there was no significant difference in the yield of the transgenic corn event DBN9229 when sprayed with basil herbicide (25 g a.i./ha) + atrazine herbicide (945 g a.i./ha) and when sprayed with glufosinate herbicide (800 g a.i./ha), which further demonstrated that the transgenic corn event DBN9229 has good tolerance to glufosinate.
实施例8.转基因玉米制品Example 8. Genetically modified corn products
可由转基因玉米事件DBN9229生产诸如农产品或商品。如果在所述农产品或商品中检测到足够的表达量,所述农产品或商品预期含有能够诊断转基因玉米事件DBN9229材料在所述农产品或商品中存在的核苷酸序列。所述农产品或商品包括但不限于玉米油、玉米粗粉、玉米面、玉米面筋、玉米饼、玉米淀粉以及将要作为食物源供动物消费的任何其它食品、或者另外作为膨大剂或化妆组合物中的成分用于化妆用途等。基于探针或引物对的核酸检测方法和/或试剂盒可以被开发以检测生物样品中诸如SEQ ID NO:1或SEQ ID NO:2所示的来源于转基因玉米事件DBN9229的核苷酸序列,其中探针序列或引物序列选自如SEQ ID NO:1、SEQ ID NO:2、SEQ ID NO:3、SEQ ID NO:4和SEQ ID NO:5中所示的序列或其部分,以诊断转基因玉米事件DBN9229的存在。Agricultural products or commodities such as can be produced from transgenic corn event DBN9229. If sufficient expression is detected in the agricultural product or commodity, the agricultural product or commodity is expected to contain a nucleotide sequence that can diagnose the presence of transgenic corn event DBN9229 material in the agricultural product or commodity. The agricultural product or commodity includes, but is not limited to, corn oil, corn meal, cornmeal, corn gluten, corn tortillas, corn starch, and any other food to be consumed by animals as a food source, or otherwise used as a bulking agent or ingredient in a cosmetic composition for cosmetic purposes. Nucleic acid detection methods and/or kits based on probe or primer pairs can be developed to detect nucleotide sequences derived from transgenic corn event DBN9229 such as shown in SEQ ID NO:1 or SEQ ID NO:2 in biological samples, wherein the probe sequence or primer sequence is selected from the sequences shown in SEQ ID NO:1, SEQ ID NO:2, SEQ ID NO:3, SEQ ID NO:4 and SEQ ID NO:5, or portions thereof, to diagnose the presence of transgenic corn event DBN9229.
综上所述,本发明转基因玉米事件DBN9229对鳞翅目昆虫具有较好的抗性,同时对草铵膦除草剂具有较高的耐受性,对产量无影响,且检测方法可以准确快速的鉴定生物样品中是否包含转基因玉米事件DBN9229的DNA分子。In summary, the transgenic corn event DBN9229 of the present invention has good resistance to lepidopteran insects and high tolerance to glufosinate herbicides without affecting yield. The detection method can accurately and quickly identify whether the biological sample contains the DNA molecules of the transgenic corn event DBN9229.
对应于转基因玉米事件DBN9229的种子已根据布达佩斯条约于2022年7月29日保
藏在中国微生物菌种保藏管理委员会普通微生物中心(简称CGMCC,地址:北京市朝阳区北辰西路1号院3号,中国科学院微生物研究所,邮编100101),保藏编号为CGMCC No.45229。保藏物将在保藏处保藏30年。Seeds corresponding to the biotech maize event DBN9229 have been protected under the Budapest Treaty on July 29, 2022. The deposit is deposited in the General Microbiology Center of China Microorganism Culture Collection (referred to as CGMCC, address: No. 3, No. 1 Beichen West Road, Chaoyang District, Beijing, Institute of Microbiology, Chinese Academy of Sciences, zip code 100101), and the deposit number is CGMCC No. 45229. The deposit will be kept at the deposit for 30 years.
尽管本发明的具体实施方式已经得到详细的描述,但本领域技术人员将理解:根据已经公布的所有教导,可以对细节进行各种修改和变动,并且这些改变均在本发明的保护范围之内。本发明的全部分为由所附权利要求及其任何等同物给出。
Although the specific embodiments of the present invention have been described in detail, it will be understood by those skilled in the art that various modifications and changes may be made to the details according to all the teachings that have been published, and these changes are within the scope of protection of the present invention. The entire invention is given by the attached claims and any equivalents thereof.
Claims (15)
- 一种核酸分子或其组合,其核酸序列包含:A nucleic acid molecule or a combination thereof, wherein the nucleic acid sequence comprises:SEQ ID NO:3或其互补序列第1-487位中至少11个连续的核苷酸、和/或SEQ ID NO:3或其互补序列第488-1105位中至少11个连续的核苷酸;At least 11 consecutive nucleotides from positions 1 to 487 of SEQ ID NO: 3 or its complementary sequence, and/or at least 11 consecutive nucleotides from positions 488 to 1105 of SEQ ID NO: 3 or its complementary sequence;SEQ ID NO:4或其互补序列第1-397位中至少11个连续的核苷酸、和/或SEQ ID NO:4或其互补序列第398-860位中至少11个连续的核苷酸;和/或At least 11 consecutive nucleotides from positions 1 to 397 of SEQ ID NO: 4 or its complementary sequence, and/or at least 11 consecutive nucleotides from positions 398 to 860 of SEQ ID NO: 4 or its complementary sequence; and/orSEQ ID NO:3或其互补序列第1-487位中至少11个连续的核苷酸、和/或SEQ ID NO:4或其互补序列第398-860位中至少11个连续的核苷酸;At least 11 consecutive nucleotides from positions 1 to 487 of SEQ ID NO:3 or its complementary sequence, and/or at least 11 consecutive nucleotides from positions 398 to 860 of SEQ ID NO:4 or its complementary sequence;优选地,所述连续的核苷酸为11、12、13、14、15、16、17、18、19、20、21、22、23、24、25、26、27、28、29、30个或更多个连续的核苷酸;Preferably, the consecutive nucleotides are 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30 or more consecutive nucleotides;优选地,所述互补序列与其母本序列是部分互补或完全互补;Preferably, the complementary sequence is partially complementary or fully complementary to its parent sequence;优选地,所述核酸序列包含SEQ ID NO:3或其互补序列第1-487位中22-25个连续的核苷酸和SEQ ID NO:3或其互补序列第488-1105位中22-25个连续的核苷酸;和/或SEQ ID NO:4或其互补序列第1-397位中22-25个连续的核苷酸和SEQ ID NO:4或其互补序列第398-860位中22-25个连续的核苷酸;Preferably, the nucleic acid sequence comprises 22-25 consecutive nucleotides from positions 1-487 of SEQ ID NO: 3 or its complementary sequence and 22-25 consecutive nucleotides from positions 488-1105 of SEQ ID NO: 3 or its complementary sequence; and/or 22-25 consecutive nucleotides from positions 1-397 of SEQ ID NO: 4 or its complementary sequence and 22-25 consecutive nucleotides from positions 398-860 of SEQ ID NO: 4 or its complementary sequence;优选地,所述核酸序列包含SEQ ID NO:1或其互补序列;和/或SEQ ID NO:2或其互补序列;Preferably, the nucleic acid sequence comprises SEQ ID NO: 1 or its complementary sequence; and/or SEQ ID NO: 2 or its complementary sequence;优选地,所述核酸序列包含SEQ ID NO:6或其互补序列;和/或SEQ ID NO:7或其互补序列;Preferably, the nucleic acid sequence comprises SEQ ID NO: 6 or its complementary sequence; and/or SEQ ID NO: 7 or its complementary sequence;优选地,所述核酸序列包含SEQ ID NO:3或其互补序列;和/或SEQ ID NO:4或其互补序列。Preferably, the nucleic acid sequence comprises SEQ ID NO: 3 or its complementary sequence; and/or SEQ ID NO: 4 or its complementary sequence.
- 一种核酸分子,所述核酸分子的核酸序列包含选自下述的任意一项:A nucleic acid molecule, the nucleic acid sequence of which comprises any one selected from the following:(1)对应于SEQ ID NO:3或其互补序列的第487位核苷酸及其上下游至少11个连续的核苷酸(例如,11、12、13、14、15、16、17、18、19、20、21、22、23、24、25、26、27、28、29、30个或更多个连续的核苷酸);(1) corresponding to nucleotide 487 of SEQ ID NO:3 or its complementary sequence and at least 11 consecutive nucleotides upstream and downstream thereof (e.g., 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30 or more consecutive nucleotides);优选地,所述核酸序列包含对应于SEQ ID NO:3或其互补序列的第487位核苷酸上游至少3个(例如,3、4、5、6、7、8、9、10、11、12、13、14、15、16、17、18、19、20或更多个)连续的核苷酸; Preferably, the nucleic acid sequence comprises at least 3 (e.g., 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20 or more) consecutive nucleotides upstream of nucleotide 487 of SEQ ID NO: 3 or its complementary sequence;优选地,所述核酸序列包含对应于SEQ ID NO:3或其互补序列的第487位核苷酸下游至少3个(例如,3、4、5、6、7、8、9、10、11、12、13、14、15、16、17、18、19、20或更多个)连续的核苷酸;Preferably, the nucleic acid sequence comprises at least 3 (e.g., 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20 or more) consecutive nucleotides downstream of nucleotide 487 of SEQ ID NO: 3 or its complementary sequence;优选地,所述核酸序列包含SEQ ID NO:1或其互补序列;Preferably, the nucleic acid sequence comprises SEQ ID NO: 1 or its complementary sequence;优选地,所述核酸序列包含SEQ ID NO:6或其互补序列;Preferably, the nucleic acid sequence comprises SEQ ID NO: 6 or its complementary sequence;优选地,所述核酸序列包含SEQ ID NO:3或其互补序列;Preferably, the nucleic acid sequence comprises SEQ ID NO: 3 or its complementary sequence;优选地,所述互补是部分互补或完全互补;Preferably, the complementarity is partial complementarity or complete complementarity;(2)对应于SEQ ID NO:4或其互补序列的第397位核苷酸及其上下游至少11个连续的核苷酸(例如,11、12、13、14、15、16、17、18、19、20、21、22、23、24、25、26、27、28、29、30个或更多个连续的核苷酸);(2) corresponding to nucleotide 397 of SEQ ID NO:4 or its complementary sequence and at least 11 consecutive nucleotides upstream and downstream thereof (e.g., 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30 or more consecutive nucleotides);优选地,所述核酸序列包含对应于SEQ ID NO:4或其互补序列的第397位核苷酸上游至少3个(例如,3、4、5、6、7、8、9、10、11或更多个)连续的核苷酸;Preferably, the nucleic acid sequence comprises at least 3 (e.g., 3, 4, 5, 6, 7, 8, 9, 10, 11 or more) consecutive nucleotides upstream of nucleotide 397 of SEQ ID NO: 4 or its complementary sequence;优选地,所述核酸序列包含对应于SEQ ID NO:4或其互补序列的第397位核苷酸下游至少3个(例如,3、4、5、6、7、8、9、10、11或更多个)连续的核苷酸;Preferably, the nucleic acid sequence comprises at least 3 (e.g., 3, 4, 5, 6, 7, 8, 9, 10, 11 or more) consecutive nucleotides downstream of the 397th nucleotide of SEQ ID NO: 4 or its complementary sequence;优选地,所述核酸序列包含SEQ ID NO:2或其互补序列;Preferably, the nucleic acid sequence comprises SEQ ID NO: 2 or its complementary sequence;优选地,所述核酸序列包含SEQ ID NO:7或其互补序列;Preferably, the nucleic acid sequence comprises SEQ ID NO:7 or its complementary sequence;优选地,所述核酸序列包含SEQ ID NO:4或其互补序列;Preferably, the nucleic acid sequence comprises SEQ ID NO: 4 or its complementary sequence;优选地,所述互补是部分互补或完全互补;Preferably, the complementarity is partial complementarity or complete complementarity;优选地,通过检测玉米植物或其部分、种子、细胞或后代中是否存在所述核酸分子以判断是否存在转基因玉米事件DBN9229的DNA;优选地,所述转基因玉米事件DBN9229的种子的代表性样品已保藏于中国普通微生物菌种保藏管理中心,保藏编号为CGMCC No.45229。Preferably, the presence of the nucleic acid molecule in a corn plant or its part, seed, cell or progeny is detected to determine whether the DNA of the transgenic corn event DBN9229 exists; preferably, representative samples of seeds of the transgenic corn event DBN9229 have been deposited in the China General Microbiological Culture Collection Center, with the deposit number CGMCC No. 45229.
- 根据权利要求1或2所述的核酸分子,其特征在于,所述核酸序列包含SEQ ID NO:5或其互补序列。The nucleic acid molecule according to claim 1 or 2 is characterized in that the nucleic acid sequence comprises SEQ ID NO: 5 or its complementary sequence.
- 一种玉米植物或其部分、种子、细胞或后代,其基因组包含权利要求1-3任一项所述的核酸分子;A corn plant or part, seed, cell or progeny thereof, the genome of which comprises the nucleic acid molecule according to any one of claims 1 to 3;优选地,所述玉米种子的代表性样品已保藏于中国普通微生物菌种保藏管理中心,保藏编号为CGMCC No.45229。 Preferably, the representative sample of the corn seeds has been deposited in the China General Microbiological Culture Collection Center with the deposit number of CGMCC No.45229.
- 包含权利要求4所述的玉米植物或其部分、种子、细胞或后代的制品;A product comprising the corn plant of claim 4 or a part, seed, cell or progeny thereof;优选地,所述制品包含所述玉米植物或其部分、种子、细胞或后代的基因组DNA;Preferably, the preparation comprises genomic DNA of the corn plant or a part, seed, cell or progeny thereof;优选地,所述制品选自玉米耳穗、去苞叶玉米、玉米穗丝、玉米花粉、玉米糁、玉米粉、压碎玉米、玉米面、玉米油、玉米淀粉、玉米浆、玉米麦芽、玉米糖、玉米糖浆、由玉米油生产的人造黄油、不饱和玉米油、饱和玉米油、玉米片、爆玉米花、由玉米生产的乙醇和/或汁(liquor)、由玉米发酵产生的干酒糟(DDGS)、来自玉米的动物饲料、化妆品和填充剂中的一项或多项。Preferably, the product is selected from one or more of corn ears, dehusked corn, corn silk, corn pollen, corn grits, corn flour, crushed corn, corn meal, corn oil, corn starch, corn steep liquor, corn malt, corn sugar, corn syrup, margarine produced from corn oil, unsaturated corn oil, saturated corn oil, corn flakes, popcorn, ethanol and/or liquor produced from corn, distillers dried grains (DDGS) produced from corn fermentation, animal feed from corn, cosmetics and fillers.
- 一种检测样品中转基因玉米的DNA的方法,所述方法包括:A method for detecting DNA of genetically modified corn in a sample, the method comprising:(a)使所述样品与用于扩增所述DNA的引物(例如,至少两种引物)在核酸扩增反应或体系中接触;(a) contacting the sample with primers (e.g., at least two primers) for amplifying the DNA in a nucleic acid amplification reaction or system;(b)进行核酸扩增反应;和(b) performing a nucleic acid amplification reaction; and(c)检测所述DNA或其扩增产物的存在;(c) detecting the presence of the DNA or its amplified product;其中,所述DNA或其扩增产物包含权利要求1-3任一项所述的核酸分子的核酸序列;优选地,所述DNA或其扩增产物包含SEQ ID NO:1或其互补序列、SEQ ID NO:2或其互补序列、SEQ ID NO:6或其互补序列、和/或SEQ ID NO:7或其互补序列;Wherein, the DNA or its amplified product comprises the nucleic acid sequence of the nucleic acid molecule according to any one of claims 1 to 3; preferably, the DNA or its amplified product comprises SEQ ID NO: 1 or its complementary sequence, SEQ ID NO: 2 or its complementary sequence, SEQ ID NO: 6 or its complementary sequence, and/or SEQ ID NO: 7 or its complementary sequence;任选地,在步骤(a)中,提供至少一种探针,使所述探针与所述样品和引物接触;Optionally, in step (a), at least one probe is provided and contacted with the sample and primers;优选地,所述样品是从玉米中提取的DNA样品;Preferably, the sample is a DNA sample extracted from corn;优选地,所述引物包含权利要求1-3任一项所述的核酸分子的核酸序列;Preferably, the primer comprises the nucleic acid sequence of the nucleic acid molecule according to any one of claims 1 to 3;优选地,所述两种引物选自SEQ ID NO:1和SEQ ID NO:9、SEQ ID NO:8和SEQ ID NO:9、SEQ ID NO:2的互补序列和SEQ ID NO:11、SEQ ID NO:10和SEQ ID NO:11、SEQ ID NO:1和SEQ ID NO:2的互补序列,或其任意组合;Preferably, the two primers are selected from the complementary sequences of SEQ ID NO: 1 and SEQ ID NO: 9, SEQ ID NO: 8 and SEQ ID NO: 9, SEQ ID NO: 2 and SEQ ID NO: 11, SEQ ID NO: 10 and SEQ ID NO: 11, SEQ ID NO: 1 and SEQ ID NO: 2, or any combination thereof;优选地,所述方法用于检测样品中转基因玉米事件DBN9229的DNA是否存在。Preferably, the method is used to detect the presence of DNA from transgenic corn event DBN9229 in a sample.
- 一种检测样品中转基因玉米的DNA的方法,所述方法包括:A method for detecting DNA of genetically modified corn in a sample, the method comprising:(a)使所述样品与探针接触,所述探针包含权利要求1-3任一项所述的核酸分子的核酸序列;优选地,所述探针包含SEQ ID NO:1或其互补序列、SEQ ID NO:2或其互补序列、SEQ ID NO:6或其互补序列、和/或SEQ ID NO:7或其互补序列;(a) contacting the sample with a probe, wherein the probe comprises the nucleic acid sequence of the nucleic acid molecule according to any one of claims 1 to 3; preferably, the probe comprises SEQ ID NO: 1 or its complementary sequence, SEQ ID NO: 2 or its complementary sequence, SEQ ID NO: 6 or its complementary sequence, and/or SEQ ID NO: 7 or its complementary sequence;(b)使所述待检测样品和所述探针在严格杂交条件下杂交;和 (b) hybridizing the sample to be detected and the probe under stringent hybridization conditions; and(c)检测所述待检测样品和所述探针的杂交情况;(c) detecting the hybridization between the sample to be detected and the probe;优选地,所述样品是从玉米中提取的DNA样品;Preferably, the sample is a DNA sample extracted from corn;优选地,所述DNA包含权利要求1-3任一项所述的核酸分子的核酸序列;Preferably, the DNA comprises the nucleic acid sequence of the nucleic acid molecule according to any one of claims 1 to 3;优选地,至少一个所述探针用至少一种荧光基团标记;Preferably, at least one of said probes is labeled with at least one fluorescent group;优选地,所述检测探针包含荧光基团和淬灭基团,其中,所述荧光基团能够发出信号,并且,所述淬灭基团能够吸收或淬灭所述荧光基团发出的信号;并且,所述探针在与其互补序列杂交的情况下发出的信号不同于在未与其互补序列杂交的情况下发出的信号;Preferably, the detection probe comprises a fluorescent group and a quencher group, wherein the fluorescent group can emit a signal, and the quencher group can absorb or quench the signal emitted by the fluorescent group; and the signal emitted by the probe when hybridizing with its complementary sequence is different from the signal emitted when not hybridizing with its complementary sequence;优选地,所述探针选自TaqMan探针,FRET探针,或其任意组合;Preferably, the probe is selected from TaqMan probe, FRET probe, or any combination thereof;优选地,所述方法用于检测样品中转基因玉米事件DBN9229的DNA是否存在。Preferably, the method is used to detect the presence of DNA from transgenic corn event DBN9229 in a sample.
- 一种检测样品中转基因玉米的DNA的方法,所述方法包括:A method for detecting DNA of genetically modified corn in a sample, the method comprising:(a)使所述样品与标记物核酸分子接触,所述标记物核酸分子包括权利要求1-3任一项所述的核酸分子的核酸序列;优选地,所述标记物核酸分子包括选自以下的至少一种:SEQ ID NO:1或其互补序列、SEQ ID NO:2或其互补序列、和/或SEQ ID NO:6-11或其互补序列;(a) contacting the sample with a marker nucleic acid molecule, wherein the marker nucleic acid molecule comprises a nucleic acid sequence of the nucleic acid molecule according to any one of claims 1 to 3; preferably, the marker nucleic acid molecule comprises at least one selected from the group consisting of: SEQ ID NO: 1 or its complementary sequence, SEQ ID NO: 2 or its complementary sequence, and/or SEQ ID NO: 6-11 or its complementary sequence;(b)使所述样品和所述标记物核酸分子在严格杂交条件下杂交;(b) hybridizing the sample and the marker nucleic acid molecule under stringent hybridization conditions;(c)检测所述样品和所述标记物核酸分子的杂交情况,进而通过标记物辅助育种分析以确定昆虫抗性和/或除草剂耐受性与标记物核酸分子在遗传学上是连锁的;(c) detecting hybridization between the sample and the marker nucleic acid molecule, and then determining through marker-assisted breeding analysis that insect resistance and/or herbicide tolerance is genetically linked to the marker nucleic acid molecule;优选地,所述方法用于检测样品中转基因玉米事件DBN9229的DNA是否存在。Preferably, the method is used to detect the presence of DNA from transgenic corn event DBN9229 in a sample.
- 一种DNA检测试剂盒,所述试剂盒包括至少一个DNA分子,所述DNA分子包含权利要求1-3任一项所述的核酸分子的核酸序列;A DNA detection kit, the kit comprising at least one DNA molecule, the DNA molecule comprising the nucleic acid sequence of the nucleic acid molecule according to any one of claims 1 to 3;优选地,所述DNA分子可以作为对于转基因玉米事件DBN9229或其后代具有特异性的DNA引物之一和/或探针;Preferably, the DNA molecule can be used as one of the DNA primers and/or probes specific to the transgenic maize event DBN9229 or its progeny;优选地,所述DNA分子可以作为对于权利要求4所述的玉米植物或其部分、种子、细胞或后代或者权利要求5的制品具有特异性的引物和/或探针;优选地,所述引物如权利要求6中所定义;优选地,所述探针如权利要求7中所定义;Preferably, the DNA molecule can be used as a primer and/or probe specific for the corn plant or its part, seed, cell or progeny according to claim 4 or the product according to claim 5; preferably, the primer is as defined in claim 6; preferably, the probe is as defined in claim 7;优选地,所述DNA分子包含SEQ ID NO:1或其互补序列、SEQ ID NO:2或其互补序列、SEQ ID NO:6或其互补序列、和/或SEQ ID NO:7或其互补序列。 Preferably, the DNA molecule comprises SEQ ID NO: 1 or its complementary sequence, SEQ ID NO: 2 or its complementary sequence, SEQ ID NO: 6 or its complementary sequence, and/or SEQ ID NO: 7 or its complementary sequence.
- 一种保护玉米植物免于昆虫侵袭的方法,所述方法包括在靶昆虫的膳食中提供至少一种转基因玉米植物细胞,所述转基因玉米植物细胞在其基因组中包含SEQ ID NO:1和/或SEQ ID NO:2所示的序列;A method for protecting corn plants from insect attack, the method comprising providing at least one transgenic corn plant cell in the diet of a target insect, the transgenic corn plant cell comprising in its genome the sequence shown in SEQ ID NO:1 and/or SEQ ID NO:2;优选地,摄食所述转基因玉米植物细胞的靶昆虫被抑制进一步摄食所述转基因玉米植物;Preferably, target insects that feed on cells of the transgenic corn plant are inhibited from further feeding on the transgenic corn plant;优选地,所述转基因玉米植物细胞在其基因组中包含SEQ ID NO:3和/或SEQ ID NO:4所示的序列;Preferably, the transgenic corn plant cell comprises the sequence shown in SEQ ID NO: 3 and/or SEQ ID NO: 4 in its genome;优选地,所述转基因玉米植物细胞在其基因组中依次包含SEQ ID NO:1、SEQ ID NO:5第685-11603位核酸序列和SEQ ID NO:2,或者包含SEQ ID NO:5所示的序列;Preferably, the transgenic corn plant cell comprises in its genome the nucleic acid sequences of SEQ ID NO:1, SEQ ID NO:5, positions 685-11603 and SEQ ID NO:2, or comprises the sequence shown in SEQ ID NO:5;优选地,所述转基因玉米植物细胞获自权利要求4所述的玉米植物或其部分、种子、细胞或后代,或者权利要求5的制品;Preferably, the transgenic corn plant cell is obtained from the corn plant or part, seed, cell or progeny thereof of claim 4, or the product of claim 5;优选地,所述昆虫为鳞翅目害虫;Preferably, the insect is a lepidopteran pest;优选地,所述昆虫选自草地贪夜蛾(Spodoptera frugiperda)、东方黏虫(Mythimna seperata)、亚洲玉米螟(Ostrinia furnacalis)、棉铃虫(Helicoverpa armiger)、桃蛀螟(Conogethes punctiferalis)、斜纹夜蛾(Spodoptera litura)、小地老虎(Agrotis ypsilon Rottemberg)、欧洲玉米螟(Ostrinia nubilalis)、谷实夜蛾(Helicoverpa zea)、西南玉米螟(Diatraea grandiosella),或其任意组合。Preferably, the insect is selected from the group consisting of fall armyworm (Spodoptera frugiperda), oriental armyworm (Mythimna seperata), Asian corn borer (Ostrinia furnacalis), cotton bollworm (Helicoverpa armiger), peach borer (Conogethes punctiferalis), fall armyworm (Spodoptera litura), cutworm (Agrotis ypsilon Rottemberg), European corn borer (Ostrinia nubilalis), corn armyworm (Helicoverpa zea), southwestern corn borer (Diatraea grandiosella), or any combination thereof.
- 一种保护玉米植物免受由除草剂引起的损伤或控制种植玉米植物的大田中杂草的方法,所述方法包括将有效剂量的草铵膦除草剂施加到种植至少一种转基因玉米植物的大田中,所述转基因玉米植物在其基因组中包含SEQ ID NO:1和/或SEQ ID NO:2所示的序列,所述转基因玉米植物对草铵膦除草剂具有耐受性;A method for protecting corn plants from damage caused by herbicides or controlling weeds in a field where corn plants are planted, the method comprising applying an effective amount of a glufosinate herbicide to a field where at least one transgenic corn plant is planted, the transgenic corn plant comprising in its genome the sequence shown in SEQ ID NO:1 and/or SEQ ID NO:2, the transgenic corn plant being tolerant to the glufosinate herbicide;优选地,所述转基因玉米植物包含对所述草铵膦除草剂具有抗性的基因(例如,膦丝菌素N-乙酰基转移酶cPAT);Preferably, the transgenic corn plant comprises a gene that confers resistance to the glufosinate herbicide (e.g., phosphinothricin N-acetyltransferase cPAT);优选地,所述转基因玉米植物在其基因组中包含SEQ ID NO:3和/或SEQ ID NO:4所示的序列;Preferably, the transgenic corn plant comprises the sequence shown in SEQ ID NO: 3 and/or SEQ ID NO: 4 in its genome;优选地,所述转基因玉米植物在其基因组中依次包含SEQ ID NO:1、SEQ ID NO:5第685-11603位核酸序列和SEQ ID NO:2,或者包含SEQ ID NO:5所示的序列;Preferably, the transgenic corn plant comprises the nucleic acid sequences of SEQ ID NO: 1, SEQ ID NO: 5, positions 685-11603 and SEQ ID NO: 2 in sequence in its genome, or comprises the sequence shown in SEQ ID NO: 5;优选地,所述转基因玉米植物是或获自权利要求4所述的玉米植物或其部分、种 子、细胞或后代。Preferably, the transgenic corn plant is or is obtained from the corn plant or part thereof, seed or plant of claim 4. offspring, cells or progeny.
- 一种培养对昆虫具有抗性和/或耐受草铵膦除草剂的玉米植物的方法,所述方法包括:A method of growing corn plants that are insect resistant and/or tolerant to glufosinate herbicides, the method comprising:(a)种植至少一粒玉米种子,所述玉米种子的基因组中包含编码昆虫抗性Cry1Fa2蛋白的核酸序列、Cry2Ab2蛋白的核酸序列和/或编码草铵膦除草剂耐受性PAT蛋白的核酸序列、以及特定区域的核酸序列;或者所述玉米种子的基因组中包含SEQ ID NO:5所示的核酸序列;(a) planting at least one corn seed, wherein the genome of the corn seed comprises a nucleic acid sequence encoding an insect resistance Cry1Fa2 protein, a nucleic acid sequence encoding a Cry2Ab2 protein and/or a nucleic acid sequence encoding a glufosinate herbicide tolerance PAT protein, and a nucleic acid sequence in a specific region; or the genome of the corn seed comprises the nucleic acid sequence shown in SEQ ID NO:5;(b)使所述玉米种子长成玉米植株;(b) growing the corn seeds into corn plants;(c)用靶昆虫侵袭所述玉米植株和/或用有效剂量草铵膦除草剂喷洒所述玉米植株,收获与其他不具有特定区域的核酸序列的植株相比具有减弱的植物损伤的玉米植株;(c) infesting the corn plants with target insects and/or spraying the corn plants with an effective amount of glufosinate herbicide, and harvesting corn plants having reduced plant damage compared to other plants not having the nucleic acid sequence of the specific region;所述特定区域的核酸序列包含SEQ ID NO:1和/或SEQ ID NO:2所示的序列;优选地,所述特定区域的核酸序列包含SEQ ID NO:3和/或SEQ ID NO:4所示的序列;The nucleic acid sequence of the specific region comprises the sequence shown in SEQ ID NO: 1 and/or SEQ ID NO: 2; preferably, the nucleic acid sequence of the specific region comprises the sequence shown in SEQ ID NO: 3 and/or SEQ ID NO: 4;优选地,所述昆虫为鳞翅目害虫;Preferably, the insect is a lepidopteran pest;优选地,所述昆虫选自草地贪夜蛾(Spodoptera frugiperda)、东方黏虫(Mythimna seperata)、亚洲玉米螟(Ostrinia furnacalis)、棉铃虫(Helicoverpa armiger)、桃蛀螟(Conogethes punctiferalis)、斜纹夜蛾(Spodoptera litura)、小地老虎(Agrotis ypsilon Rottemberg)、欧洲玉米螟(Ostrinia nubilalis)、谷实夜蛾(Helicoverpa zea)、西南玉米螟(Diatraea grandiosella),或其任意组合;Preferably, the insect is selected from the group consisting of fall armyworm (Spodoptera frugiperda), oriental armyworm (Mythimna seperata), Asian corn borer (Ostrinia furnacalis), cotton bollworm (Helicoverpa armiger), peach borer (Conogethes punctiferalis), fall armyworm (Spodoptera litura), cutworm (Agrotis ypsilon Rottemberg), European corn borer (Ostrinia nubilalis), corn armyworm (Helicoverpa zea), southwestern corn borer (Diatraea grandiosella), or any combination thereof;优选地,所述玉米种子是或获自权利要求4所述的玉米植物或其部分、种子、细胞或后代。Preferably, the corn seed is or is obtained from the corn plant of claim 4, or a part, seed, cell or progeny thereof.
- 一种产生对昆虫具有抗性和/或对草铵膦除草剂具有耐受性的玉米植株的方法,所述方法包括:向所述玉米植株的基因组中引入编码昆虫抗性Cry1Fa2蛋白的核酸序列、Cry2Ab2蛋白的核酸序列和/或编码草铵膦耐受性PAT蛋白的核酸序列、以及特定区域的核酸序列,所述特定区域的核酸序列包含选自SEQ ID NO:1、SEQ ID NO:2、SEQ ID NO:3、SEQ ID NO:4、SEQ ID NO:5、SEQ ID NO:6和SEQ ID NO:7所示序列中至少一种核酸序列;A method for producing a corn plant that is resistant to insects and/or tolerant to glufosinate herbicides, the method comprising: introducing into the genome of the corn plant a nucleic acid sequence encoding an insect-resistant Cry1Fa2 protein, a nucleic acid sequence of a Cry2Ab2 protein and/or a nucleic acid sequence encoding a glufosinate-tolerant PAT protein, and a nucleic acid sequence in a specific region, wherein the nucleic acid sequence in the specific region comprises at least one nucleic acid sequence selected from the group consisting of SEQ ID NO: 1, SEQ ID NO: 2, SEQ ID NO: 3, SEQ ID NO: 4, SEQ ID NO: 5, SEQ ID NO: 6 and SEQ ID NO: 7;优选地,所述方法包括将第一玉米植物基因组中包含的编码昆虫抗性Cry1Fa2蛋白的核酸序列、Cry2Ab2蛋白的核酸序列和/或编码草铵膦耐受性PAT蛋白的核酸序列、以 及特定区域的核酸序列,或者将所述第一玉米植物基因组中包含的SEQ ID NO:5所示的核酸序列,引入第二玉米植物,从而产生大量子代植株;选择具有所述特定区域的核酸序列的所述子代植株,且所述子代植株对昆虫具有抗性和/或对草铵膦除草剂具有耐受性;所述特定区域的核酸序列包含SEQ ID NO:1和/或SEQ ID NO:2所示的序列;优选地,所述特定区域的核酸序列包含SEQ ID NO:3和/或SEQ ID NO:4所示的序列;Preferably, the method comprises converting the nucleic acid sequence encoding the insect resistance Cry1Fa2 protein, the nucleic acid sequence of the Cry2Ab2 protein and/or the nucleic acid sequence encoding the glufosinate-tolerant PAT protein contained in the genome of the first corn plant into and a nucleic acid sequence in a specific region, or the nucleic acid sequence shown in SEQ ID NO:5 contained in the genome of the first corn plant is introduced into a second corn plant, thereby producing a large number of progeny plants; selecting the progeny plants having the nucleic acid sequence in the specific region, and the progeny plants are resistant to insects and/or tolerant to glufosinate-ammonium herbicides; the nucleic acid sequence in the specific region comprises the sequence shown in SEQ ID NO:1 and/or SEQ ID NO:2; preferably, the nucleic acid sequence in the specific region comprises the sequence shown in SEQ ID NO:3 and/or SEQ ID NO:4;优选地,所述方法包括将转基因玉米事件DBN9229与另外的玉米植株(例如,缺少昆虫抗性和/或草铵膦耐受性的玉米植株)杂交(例如,有性杂交)或自交,从而产生大量子代植株,选择具有所述特定区域的核酸序列的所述子代植株;Preferably, the method comprises crossing (e.g., sexually crossing) or selfing the transgenic corn event DBN9229 with another corn plant (e.g., a corn plant lacking insect resistance and/or glufosinate tolerance), thereby producing a plurality of progeny plants, and selecting the progeny plants having the nucleic acid sequence of the specific region;优选地,所述方法包括将第一代子代植株自交,由此产生多个第二代子代植株;用靶昆虫侵袭和/或用草铵膦处理所述子代植株;选择对昆虫具有抗性和/或对草铵膦除草剂具有耐受性的所述子代植株;Preferably, the method comprises selfing a first generation progeny plant, thereby producing a plurality of second generation progeny plants; infesting the progeny plants with target insects and/or treating the progeny plants with glufosinate-ammonium; selecting the progeny plants for resistance to the insects and/or tolerance to the glufosinate-ammonium herbicide;优选地,所述玉米植株是或获自权利要求4所述的玉米植物或其部分、种子、细胞或后代。Preferably, the corn plant is or is obtained from the corn plant of claim 4, or a part, seed, cell or progeny thereof.
- 根据权利要求13所述的方法,所述方法还包括将所述对昆虫具有抗性和/或对草铵膦除草剂具有耐受性的子代植株与另一玉米亲本进行有性杂交,并且收获由此生产的杂交种子;The method according to claim 13, further comprising sexually crossing the insect-resistant and/or glufosinate-tolerant progeny plant with another corn parent and harvesting the hybrid seed produced thereby;优选地,所述昆虫为鳞翅目害虫;Preferably, the insect is a lepidopteran pest;优选地,所述昆虫选自草地贪夜蛾(Spodoptera frugiperda)、东方黏虫(Mythimna seperata)、亚洲玉米螟(Ostrinia furnacalis)、棉铃虫(Helicoverpa armiger)、桃蛀螟(Conogethes punctiferalis)、斜纹夜蛾(Spodoptera litura)、小地老虎(Agrotis ypsilon Rottemberg)、欧洲玉米螟(Ostrinia nubilalis)、谷实夜蛾(Helicoverpa zea)、西南玉米螟(Diatraea grandiosella),或其任意组合。Preferably, the insect is selected from the group consisting of fall armyworm (Spodoptera frugiperda), oriental armyworm (Mythimna seperata), Asian corn borer (Ostrinia furnacalis), cotton bollworm (Helicoverpa armiger), peach borer (Conogethes punctiferalis), fall armyworm (Spodoptera litura), cutworm (Agrotis ypsilon Rottemberg), European corn borer (Ostrinia nubilalis), corn armyworm (Helicoverpa zea), southwestern corn borer (Diatraea grandiosella), or any combination thereof.
- 一种产生自转基因玉米事件DBN9229的农产品或商品,其特征在于,所述农产品或商品为玉米粗粉、玉米面、玉米油、玉米穗丝、玉米淀粉、玉米面筋、玉米饼、化妆品或填充剂。 An agricultural product or commodity produced from transgenic corn event DBN9229, characterized in that the agricultural product or commodity is corn meal, corn flour, corn oil, corn silk, corn starch, corn gluten, corn tortillas, cosmetics or fillers.
Applications Claiming Priority (2)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
CN202310235118.1 | 2023-03-13 | ||
CN202310235118.1A CN116732215A (en) | 2023-03-13 | 2023-03-13 | Nucleic acid sequence for detecting corn plant DBN9229 and its detection method |
Publications (1)
Publication Number | Publication Date |
---|---|
WO2024188236A1 true WO2024188236A1 (en) | 2024-09-19 |
Family
ID=87900107
Family Applications (1)
Application Number | Title | Priority Date | Filing Date |
---|---|---|---|
PCT/CN2024/081178 WO2024188236A1 (en) | 2023-03-13 | 2024-03-12 | Nucleic acid sequence for detecting corn plant dbn9229 and detection method therefor |
Country Status (3)
Country | Link |
---|---|
CN (1) | CN116732215A (en) |
AR (1) | AR132130A1 (en) |
WO (1) | WO2024188236A1 (en) |
Families Citing this family (1)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
CN116732215A (en) * | 2023-03-13 | 2023-09-12 | 北京大北农生物技术有限公司 | Nucleic acid sequence for detecting corn plant DBN9229 and its detection method |
Citations (8)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
CN104968672A (en) * | 2012-07-02 | 2015-10-07 | 先锋国际良种公司 | Novel insecticidal proteins and methods of use thereof |
WO2016044092A1 (en) * | 2014-09-17 | 2016-03-24 | Pioneer Hi Bred International Inc | Compositions and methods to control insect pests |
CN106086011A (en) * | 2016-06-18 | 2016-11-09 | 北京大北农科技集团股份有限公司 | For detecting nucleotide sequence and the detection method thereof of herbicide tolerant bean plant DBN9004 |
CN109868273A (en) * | 2019-04-09 | 2019-06-11 | 北京大北农生物技术有限公司 | For detecting the nucleic acid sequence and its detection method of corn plant DBN9501 |
CN109971880A (en) * | 2019-04-09 | 2019-07-05 | 北京大北农生物技术有限公司 | Nucleic acid sequence for detection of maize plant DBN9508 and detection method thereof |
CN112831585A (en) * | 2021-01-27 | 2021-05-25 | 隆平生物技术(海南)有限公司 | Transgenic maize event LP007-4 and methods of detecting same |
WO2022094790A1 (en) * | 2020-11-04 | 2022-05-12 | 中国农业大学 | Corn event 2a-7 and identification method therefor |
CN116732215A (en) * | 2023-03-13 | 2023-09-12 | 北京大北农生物技术有限公司 | Nucleic acid sequence for detecting corn plant DBN9229 and its detection method |
-
2023
- 2023-03-13 CN CN202310235118.1A patent/CN116732215A/en active Pending
-
2024
- 2024-03-12 WO PCT/CN2024/081178 patent/WO2024188236A1/en unknown
- 2024-03-13 AR ARP240100626A patent/AR132130A1/en unknown
Patent Citations (8)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
CN104968672A (en) * | 2012-07-02 | 2015-10-07 | 先锋国际良种公司 | Novel insecticidal proteins and methods of use thereof |
WO2016044092A1 (en) * | 2014-09-17 | 2016-03-24 | Pioneer Hi Bred International Inc | Compositions and methods to control insect pests |
CN106086011A (en) * | 2016-06-18 | 2016-11-09 | 北京大北农科技集团股份有限公司 | For detecting nucleotide sequence and the detection method thereof of herbicide tolerant bean plant DBN9004 |
CN109868273A (en) * | 2019-04-09 | 2019-06-11 | 北京大北农生物技术有限公司 | For detecting the nucleic acid sequence and its detection method of corn plant DBN9501 |
CN109971880A (en) * | 2019-04-09 | 2019-07-05 | 北京大北农生物技术有限公司 | Nucleic acid sequence for detection of maize plant DBN9508 and detection method thereof |
WO2022094790A1 (en) * | 2020-11-04 | 2022-05-12 | 中国农业大学 | Corn event 2a-7 and identification method therefor |
CN112831585A (en) * | 2021-01-27 | 2021-05-25 | 隆平生物技术(海南)有限公司 | Transgenic maize event LP007-4 and methods of detecting same |
CN116732215A (en) * | 2023-03-13 | 2023-09-12 | 北京大北农生物技术有限公司 | Nucleic acid sequence for detecting corn plant DBN9229 and its detection method |
Non-Patent Citations (1)
Title |
---|
LI YU, WANG TIAN-YU: "Germplasm Enhancement in Maize: Advances and Prospects", JOURNAL OF MAIZE SCIENCES, vol. 26, no. 2, 15 April 2018 (2018-04-15), XP093210451, ISSN: 1005-0906, DOI: 10.13597/j.cnki.maize.science.20180201 * |
Also Published As
Publication number | Publication date |
---|---|
CN116732215A (en) | 2023-09-12 |
AR132130A1 (en) | 2025-05-28 |
Similar Documents
Publication | Publication Date | Title |
---|---|---|
CN109868273B (en) | Nucleic acid sequence and detection method for detecting corn plant DBN9501 | |
CN112852801B (en) | Transgenic corn event LP007-1 and detection method thereof | |
CN116144818B (en) | Genetically modified corn event LP026-2 and its detection method | |
WO2016173361A1 (en) | Maize plant dbn9936 and method for use in detecting nucleic acid sequence thereof | |
CN109971880B (en) | Nucleic acid sequence for detection of maize plant DBN9508 and detection method thereof | |
CN111406117B (en) | Nucleic acid sequence for detecting soybean plant DBN8002 and detection method thereof | |
WO2016173362A1 (en) | Maize plant dbn9978 and method for use in detecting nucleic acid sequence thereof | |
CN111247255B (en) | Nucleic acid sequence for detecting soybean plant DBN8007 and detection method thereof | |
CN116144817B (en) | Transgenic corn event LP026-4 and detection method thereof | |
CN112831585A (en) | Transgenic maize event LP007-4 and methods of detecting same | |
WO2024188231A1 (en) | Nucleic acid sequence for detecting corn plant dbn9235 and detection method therefor | |
CN112831584A (en) | Transgenic maize event LP007-2 and methods of detecting same | |
CN104878092B (en) | Nucleic acid sequence and its detection method for detecting corn plant DBN9953 | |
WO2023155193A1 (en) | Nucleic acid sequence for detecting glycine max plant dbn8205 and detection method therefor | |
CN113151533A (en) | Transgenic maize event LP007-6 and methods of detecting same | |
CN113151534A (en) | Transgenic maize event LP007-5 and methods of detecting same | |
WO2024188236A1 (en) | Nucleic acid sequence for detecting corn plant dbn9229 and detection method therefor | |
CN116144671A (en) | Transgenic corn event LP026-3 and detection method thereof | |
WO2025020707A1 (en) | Transgenic soybean event lp086-1 and detection method therefor | |
CN104830983A (en) | Nucleic acid sequence for detecting corn plant DBN9968, and detection method thereof | |
WO2016173360A1 (en) | Maize plant dbn9927 and method for use in detecting nucleic acid sequence thereof | |
CN104878097B (en) | Nucleic acid sequence and its detection method for detecting corn plant DBN9981 | |
CN116640761B (en) | Transgenic maize event LP018-1 and detection method thereof | |
CN113980958A (en) | Transgenic maize event LP007-8 and methods of detecting same |
Legal Events
Date | Code | Title | Description |
---|---|---|---|
121 | Ep: the epo has been informed by wipo that ep was designated in this application |
Ref document number: 24769928 Country of ref document: EP Kind code of ref document: A1 |