WO1998040403A1 - Psca: prostate stem cell antigen - Google Patents

Abstract

The invention provides a novel prostate-specific cell-surface antigen, designated Prostate Stem Cell Antigen (PSCA), which is widely over-expressed across all stages of prostate cancer, including high grade prostatic intraepithelial neoplasia (PIN), androgen-dependent and androgen-independent prostate tumors.

Description

PSCA: PROSTATE STEM CELL ANTIGEN

Throughout this application, vanous publications are referenced within parentheses The disclosures of these publications are hereby incorporated by reference herein in their entireties

BACKGROUND OF THE INVENTION

Prostate cancer is currently the most common type of cancer in Amencan men and the second leading cause of cancer related death in this population In its advanced stages, prostate cancer metastasizes preferentially to bone, where it forms osteoblastic lesions After initial treatment with androgen ablation therapy, most metastatic prostate cancers become hormone-refractory and lethal Current diagnostic and therapeutic modalities are limited by a lack of specificity and an inability to predict which patients are at nsk of developing metastaUc disease

Most prostate cancers initially occur in the penpheral zone of the prostate gland, away from the urethra Tumors withm this zone may not produce any symptoms and. as a result, most men with early-stage prostate cancer will not present clinical symptoms of the disease until significant progression has occurred Tumor progression into the transition zone of the prostate may lead to urethral obstruction, thus producing the first symptoms of the disease However, these clinical symptoms are indistinguishable from the common non-malignant condition of benign prostatic hyperplasia (BPH)

One of the fundamental problems in the diagnosis and treatment of prostate cancer is the lack of a marker that can accurately detect early-stage, localized tumors Although a number of markers have been identified and some, like PSA are in widespread clinical use, the ideal prostate tumor marker has yet to be characterized A similar problem is the lack of an effective prognostic marker for determining which cancers are indolent and which ones are or will be aggressive PSA for example, fails to discnminate accurately between indolent and aggressive cancers In addition, there is also a great need for markers which might serve as ideal, prostate-specific targets for therapeutic methods such as antibody-directed therapy, lmmunotherapy, and gene therapy Currently, there is no effective treatment for the 20-40% of patients who develop recurrent disease after surgery or radiation therapy or for those patients who have metastatic disease at the time of diagnosis Although hormone ablation therapy can palliate these patients, the majority inevitably progress to develop incurable, androgen-mdependent disease (Lalam et al . 1997. Cancer Metastasis Rev 16 29-66)

Early detection and diagnosis of prostate cancer currently relies on digital rectal examinations (DRE). prostate specific antigen (PSA) measurements, transrectal ultrasonography (TRUS). and transrectal needle biopsy (TRNB) At present, serum PSA measurement in combination with DRE represent the leading tool used to detect and diagnose prostate cancer Both have major limitations which have fueled intensive research into finding better diagnostic markers of this disease

PSA is the most widely used tumor marker for screemng, diagnosis, and monitoring prostate cancer today In particular, several immunoassays for the detection of serum PSA are in widespread clinical use Recently, a reverse transcnptase-polymerase chain reaction (RT-PCR) assay for PSA mRNA in serum has been developed However, PSA is not a disease-specific marker, as elevated levels of PSA are detectable in a large percentage of patients with BPH and prostatitis (25- 86%)(Gao et al , 1997, Prostate 31 264-281), as well as in other nonmalignant disorders and in some normal men, a factor which significantly limits the diagnostic specificity of this marker For example, elevations m serum PSA of between 4 to 10 ng/ml are observed in BPH, and even higher values are observed in prostatitis, particularly acute prostatitis BPH is an extremely common condition in men Further confusing the situation is the fact that serum PSA elevations may be observed without any indication of disease from DRE. and visa-versa Moreover, it is now recognized that PSA is not prostate-specific (Gao et al , supra, for review)

Vanous methods designed to improve the specificity of PSA-based detection have been descnbed, such as measuπng PSA density and the ratio of free vs complexed PSA However, none of these methodologies have been able to reproducibly distinguish benign from malignant prostate disease In addition, PSA diagnostics have sensitivities of between 57-79% (Cupp & Osterhng, 1993, Mayo Clm Proc 68 297-306), and thus miss identifying prostate cancer m a significant population of men with the disease

Prostate -Specific Membrane Antigen (PSMA) is a recently descnbed cell surface marker of prostate cancer which has been the subject of vanous studies evaluating its use as a diagnostic and therapeutic marker PSMA expression is largely restricted to prostate tissues, but detectable levels of PSMA mRNA have been observed in brain, salivary gland, small intestine, and renal cell carcinoma (Israeli et al , 1993, Cancer Res 53 227-230) PSMA protein is highly expressed m most pπmary and metastatic prostate cancers, but is also expressed in most normal intraepithelial neoplasia specimens (Gao et al , supra) Preliminary results using an Indium-Ill labeled, anti- PSMA monoclonal antibody to image recurrent prostate cancer show some promise (Sodee et al 1996. C n Nuc Med 21 759-766) Whether PSMA will prove to be a useful therapeutic target remains to be determined However. PSMA is a hormone dependent antigen requiring the presence of functional androgen receptor Since not all prostate cancer cells express androgen receptor. PSMA's utility as a therapeutic target may be inherently limited.

Clinical staging of prostate cancer is another fundamental problem facing urologists toda\ Currently, clinical staging relies on rectal examination to determine whether the tumor remains withm the borders of the prostatic capsule (locally confined) or extends beyond it (locally advanced), in combination with serum PSA determinations and transrectal ultrasound guided biopsies However, because of the subjectivity involved, clinical staging by DRE regularly underestimates or overestimates local extension of the tumor, frequently misjudges its location, and correlates poorly with volume and extent of the tumor (Lee. C T and Osterhng, J E Cancer of the Prostate Diagnosis and Staging In Urologic Onclology, W B Saunders Company, Philadelphia, pp 357- 377 (1997)) Serum PSA levels are also utilized for staging purposes, but PSA alone has not been able to reliably stage prostate tumors No technique has proven reliable for predicting progression of the disease Thus, there is a need for more reliable and informative staging and prognostic methods in the management of prostate cancer

SUMMARY OF THE INVENTION

The invention provides a novel prostate-specific cell-surface antigen, designated Prostate Stem Cell Antigen (PSCA), which is widely over-expressed across all stages of prostate cancer, including high grade prostatic intraepithelial neoplasia (PIN), androgen-dependent and androgen-independent prostate tumors The PSCA gene shows 30% homology to stem cell antιgen-2 (SCA-2). a member of the Thy-l/Ly-6 family of glycosylphosphatidyhnositol (GPI)-anchored cell surface antigens, and encodes a 123 amino acid protein with an amino-terminal signal sequence, a carboxy-terminal GPI- anchonng sequence, and multiple N-glycosylation sites PSCA mRNA expression is prostate specific in normal male tissues and is highly upregulated m both androgen dependent and androgen independent prostate cancer xenografts In situ mRNA analysis localizes PSCA expression to the basal cell epithelium, the putative stem cell compartment of the prostate Flow cytometnc analysis demonstrates that PSCA is expressed predominantly on the cell surface and is anchored by a GPI linkage Fluorescent in situ hybridization analysis localizes the PSCA gene to chromosome 8q24 2, a region of allelic gain in more than 80% of prostate cancers

PSCA may be an optimal therapeutic target m view of its cell surface location, prostate specific expression, and greatly upregulated expression in prostate cancer cells In this regard, the invention provides antibodies capable of binding to PSCA which can be used therapeutically to destroy prostate cancer cells In addition, PSCA proteins and PSCA-encodmg nucleic acid molecules mav be used in vanous lmmunotherapeutic methods to promote immune-mediated destruction of prostate tumors

PSCA also may represent an ideal prostate cancer marker which can be used to discnnunate between malignant prostate cancers, normal prostate glands and non-malignant neoplasias For exmaple. PSCA is expressed at very high levels in prostate cancer in relation to benign prostatic hyperplasia (BPH) In contrast, the widely used prostate cancer marker PSA is expressed at high levels m both normal prostate and BPH, but at lower levels in prostate cancer, rendeπng PSA expression useless for distinguishing malignant prostate cancer from BPH or normal glands Because PSCA expression is essentially the reverse of PSA expression, analysis of PSCA expression can be employed to distinguish prostate cancer from non-malignant conditions

The genes encoding both human and munne PSCA have been isolated and their coding sequences elucidated and provided herein Also provided are the amino acid sequences of both human and munne PSCA The invention further provides vanous diagnostic assays for the detection, monitoring, and prognosis of prostate cancer, including nucleic acid-based and immunological assays PSCA-specific monoclonal and polyclonal antibodies and lmmunotherapeutic and other therapeutic methods of treating prostate cancer are also provided These and other aspects of the invention are further descnbed below

BRIEF DESCRIPTION OF THE FIGURES

FIG 1 Nucleotide (A) and translated amino acid (B) sequences of a cDNA encoding human PSCA (ATCC Designation 209612)

FIG 2 Nucleotide sequence of a cDNA encoding munne PSCA homologue

FIG 3 Alignment of amino acid sequences of human PSCA munne PSCA and human stem cell antιgen-2 (hSCA-2) Shaded regions highlight conserved amino acids Conserved cysteines are indicated by bold lettenng Four predicted N-glycosylation sites in PSCA are indicated by astensks The underlined amino acids at the beginning and end of the protein represent N terminal hydrophobic signal sequences and C terminal GPI-anchonng sequences, respectively

FIG 4 Hydrophobicity plot of human PSCA

FIG 5 Chou-Fassman analysis of human PSCA FIG 6 RT-PCR analysis of PSCA expression in vanous prostate cancer cell hues and xenografts

FIG 7 Restπcted Expression of PSCA mRNA m normal and cancerous tissues A RT-PCR analysis of PSCA expression m normal human tissues demonstrating high expression m prostate, placenta and tonsils lng of reverse-transcnbed first strand cDNA (Clontech. Palo Alto, CA) from the indicated tissues was amplified with PSCA gene specific primers Data shown are from 30 cycles of amplification B RT- PCR analysis of PSCA expression demonstrating high level m prostate cancer xenografts and normal tissue 5ng of reverse-transcnbed cDNA from the indicated tissues was amplified with PSCA gene specific primers Amplification with β-actin gene specific primers demonstrate normalization of of the first strand cDNA of the vanous samples Data shown are from 25 cycles of amplification. AD. androgen-dependent, Al, androgen-independent, IT, lntratibial xenograft, C L , cell line

FIG 8 Schematic representation of human PSCA, munne PSCA. and human Thy-l/Lv-6 gene structures

FIG 9 Northern blot analysis of PSCA expression A: Total RNA from normal prostate and LAPC-4 androgen dependent (AD) and independent (Al) prostate cancer xenografts were analyzed using PSCA or PSA specific probes Equivalent RNA loading and RNA integnty were demonstrated separately by ethidium staining for 18S and 28S RNA B: Human multiple tissue Northern blot analysis of PSCA The filter was obtained from Clontech (Palo Alto, CA) and contains 2ug of polyA RNA m each lane

FIG 10 Northern blot compaπson of PSCA, PSMA, and PSA expression in prostate cancer xenografts and tumor cell lines PSCA and PSMA demonstrate high level prostate cancer specific gene expression 10 μg of total RNA from the indicated tissues were size fractionated on an agarose formaldehyde gel, transferred to nitrocellulose, and hybndized sequentially with ³²P- labelled probes representing PSCA. PSMA, and PSA cDNA fragments Shown are 4 hour and 72 hour autoradiogrphic exposures of the membrane and the ethidium bromide gel demonstrating equivalent loading of samples BPH, benign prostatic hyperplasia. AD, androgen-dependent, Al. androgen-mdependent, IT, mtratibial xenograft, C L . cell line

FIG 11 In situ hybridization with antisense πboprobe for human PSCA on normal and malignant prostate specimens A: PSCA is expressed by a subset of basal cells within the basal cell epithelium (black arrows), but not by the terminally differentiated secretory cells lining the prostatic ducts (400X magnification) B: PSCA is expressed strongly by a high grade prostatic intraepithelial neoplasia (PIN) (black arrow) and by invasive prostate cancer glands (yellow arrows), but is not detectable in normal epithelium (green arrow) at 40X magnification C: Strong expression of PSCA in a case of high grade carcinoma (200X magnification) FIG 12 Biochemical analysis of PSCA A: PSCA was lmmunoprecipitated from 293T cells transiently transfected with a PSCA construct and then digested with either N-glycosidase F or O- glycosidase, as descnbed in Matenals and Methods B: PSCA was lmmunoprecipiated from 293T transfected cells, as well as from conditioned media of these cells Cell-associated PSCA migrates higher than secreted PSCA on a 15% polyacrylamide gel C:FACS analysis of mock-transfected 293T cells. PSCA-transfected 293T cells and LAPC-4 prostate cancer xenograft cells using an affinity purified polyclonal anti-PSCA antibody Cells were not permeabihzed in order to detect only surface expression The y axis represents relative cell number and the x axis represents fluorescent staining intensity on a loganthmic scale

FIG 13 In situ hybridization of biotin-labeled PSCA probes to human metaphase cells from phytohemagglutimn-stimulated penpheral blood lymphocytes The chromosome 8 homologues are identified with arrows, specific labeling was observed at 8q24 2 The inset shows partial karyotypes of two chromosome 8 homologues illustrating specific labeling at 8q24 2 (arrowheads) Images were obtained using a Zeiss Axiophot microscope coupled to a cooled charge coupled device (CCD) camera Separate images of DAPI stained chromosomes and the hybndization signal were merged using image analysis software (NU200 and Image 1 57)

FIG 14 How Ctometnc analysis of cell surface PSCA expression on prostate cancer xenograft (LAPC-9), prostate cancer cell line (LAPC-4) and normal prostate epithelial cells (PREC) using anti-PSCA monoclonal antibodies 1G8 (green) and 3E6 (red), mouse anti-PSCA polyclonal serum (blue), or control secondary antibody (black) See Example 5 for details

FIG 15 Epitope mappmg of anti-PSC A monoclonal antibodies 1G8 and 3E6 See Example 5 for details

DETAILED DESCRDTTION OF THE INVENTION

The present invention relates to Prostate Stem Cell Antigen (hereinafter "PSCA") PSCA is a novel, glycosylphosphatidylmositol (GPI)-anchored cell surface antigen which is expressed almost exclusively in prostate cells and which is overexpressed by both androgen-dependent and androgen- lndependent prostate cancer cells The expression of PSCA in prostate cancer may correlate with increasing grade

PSCA mRNA is also expressed by a subset of basal cells in normal prostate The basal cell epithelium is believed to contain the progemtor cells for the terminally differentiated secretory cells (Bonkhoff et al.. 1994, Prostate 24: 114-118). Recent studies using cytokeratin markers suggest that the basal cell epithelium contains at least two distinct cellular subpopulations, one expressing cytokeratins 5 and 14 and the other cytokeratins 5. 8 and 18 (Bonkhoff and Remberger, 1996, Prostate 28: 98-106). The finding that PSCA is expressed by only a subset of basal cells suggests that PSCA may be a marker for one of these two basal cell lineages.

The biological function of PSCA is unknown. The Ly-6 gene family is involved in diverse cellular functions, including signal transduction and cell-cell adhesion. Signaling through SCA-2 has been demonstrated to prevent apoptosis in immature thymocytes (Noda et al., 1996, J. Exp. Med. 183: 2355-2360). Thy-1 is involved in T cell activation and transmits signals through src-like tyrosine kinases (Thomas et al.. 1992. J. Biol. Chem. 267: 12317-12322). Ly-6 genes have been implicated both in tumorigenesis and in homotypic cell adhesion (Bamezai and Rock, 1995, Proc. Natl. Acad. Sci. USA 92: 4294-4298; Katz et al., 1994, Int. J. Cancer 59: 684-691; Brakenhoff et al., 1995, J. Cell Biol. 129: 1677-1689). Based on its restricted expression in basal cells and its homology to Sca- 2. we hypothesize that PSCA may play a role in stem/progemtor cell functions such as self-renewal (anti-apoptosis) and/or proliferation.

PSCA is highly conserved in mice and humans. The identification of a conserved gene which is predominantly restricted to prostate supports the hypothesis that PSCA may play an important role in normal prostate development.

In its various aspects, as described in detail below, the present invention provides PSCA proteins, antibodies, nucleic acid molecules, recombinant DNA molecules, transformed host cells, generation methods, assays, irnmunotherapeutic methods, transgenic animals, immunological and nucleic acid-based assays, and compositions.

PSCA PROTEINS

One aspect of the invention provides various PSCA proteins and peptide fragments thereof. As used herein, PSCA refers to a protein that has the amino acid sequence of human PSCA as provided in FIGS. IB and 3. the amino acid sequence of the murine PSCA homologue as provided in FIG. 3, or the amino acid sequence of other mammalian PSCA homologues. as well as allelic variants and conservative substitution mutants of these proteins that have PSCA activity. The PSCA proteins of the invention include the specifically identified and characterized variants herein described, as well as allelic variants, conservative substitution variants and homologs that can be isolated/generated and characterized without undue experimentation following the methods outlined below. For the sake of convenience, all PSCA proteins will be collectively referred to as the PSCA proteins, the proteins of the invention, or PSCA The term "PSCA" mcludes all naturally occurnng allelic variants, lsoforms. and precursors of human PSCA as provided m FIGS IB and 3 and munne PSCA as provided in FIG 3 In general, for example, naturally occurnng allehc variants of human PSCA will share significant homology (e g , 70 - 90%) to the PSCA am o aαd sequence provided m FIGS IB and 3 Allehc vanants, though possessing a slightly different ammo aαd sequence, may be expressed on the surface of prostate cells as a GPI linked protein or may be secreted. Typically, allehc variants of the PSCA protein will contain conservative ammo aαd substitutions from the PSCA sequence herein descnbed or will contain a substitution of an ammo aαd from a correspondmg position m a PSCA homologue such as, for example, the munne PSCA homologue descnbed herein

One class of PSCA allehc variants will be proteins that share a high degree of homology with at least a small region of the PSCA ammo aαd sequences presented in FIGS IB and 3, but will further contain a radical departure form the sequence, such as a non-conservative substitution, truncation, insertion or frame shift Such alleles are termed mutant alleles of PSCA and represent proteins that typically do not perform the same biological functions

Conservative amino acid substitutions can frequently be made m a protein without altenng either the conformation or the function of the protein Such changes include substituting any of isoleucine (I), valme (V). and leucme (L) for any other of these hydrophobic amino acids, aspartic acid (D) for glutamic acid (E) and vice versa, glutanune (Q) for asparagme (N) and vice versa, and senne (S) for threonine (T) and vice versa Other substitutions can also be considered conservative, depending on the environment of the particular amino acid and its role in the three-dimensional structure of the protein For example, glycine (G) and alanine (A) can frequently be interchangeable, as can alamne (A) and valme (V) Methionine (M), which is relatively hydrophobic, can frequently be interchanged with leuαne and isoleucine, and sometimes with valme Lysine (K) and arginine (R) are frequently interchangeable m locations in which the significant feature of the amino acid residue is its charge and the differing pK's of these two amino acid residues are not significant Still other changes can be considered "conservative" in particular environments

The ammo aαd sequence of human PSCA protein is provided m FIGS IB and 3 Human PSCA is compnsed of a single subunit of 123 ammo aαds and contains an anunc-ternrinal signal sequence, a cartioxy-terminal GPI-anchoπng sequence, and multiple N-glycosylation sites PSCA shows 30% homology to stem cell antigen-2 (SCA-2), a member of the Thy- 1 /Ly-6 gene family, a group of cell surface proteins which mark the earhest phases of hematopoetic development The ammo aαd sequence of a munne PSCA homologue is shown in FIG 3 Munne PSCA is a single subunit protein of 123 ammo aαds having approximately 70% homology to human PSCA and similar structural organization PSCA proteins may be embodied in many forms, preferably m isolated form As used herein, a protein is said to be isolated when physical, mechanical or chemical methods are employed to remove the PSCA protein from cellular constituents that are normally associated with the protein A skilled artisan can readily employ standard purification methods to obtain an isolated PSCA protein A punfied PSCA protein molecule will be substantially free of other proteins or molecules which impair the binding of PSCA to antibody or other hgand The nature and degree of isolation and purification will depend on the intended use Embodiments of the PSCA protein include a purified PSCA protein and a functional, soluble PSCA protein One example of a functional soluble PSCA protein has the ammo acid sequence shown in FIG IB or a fragment thereof In one form, such functional, soluble PSCA proteins or fragments thereof retain the ability to bind antibody or other hgand

The invention also provides peptides compnsing biologically active fragments of the human and munne PSCA ammo acid sequences shown m FIGS IB and 3 The peptides of the invention exhibit properties of PSCA, such as the ability to elicit the generation of antibodies which specifically bind an epitope associated with PSCA Such peptide fragments of the PSCA proteins can be generated using standard peptide synthesis technology and the ammo aαd sequences of the human or munne PSCA proteins disclosed herein Alternatively, recombinant methods can be used to generate nucleic aαd molecules that encode a fragment of the PSCA protein In this regard, the PSCA-encoding nucleic aαd molecules descnbed herein provide means for generating defined fragments of PSCA. As discussed below, peptide fragments of PSCA are particularly useful m generating domam specific antibodies, identifying agents that bmd to PSCA or a PSCA domam. identifying cellular factors that bmd to PSCA or a PSCA domam. and isolating homologs or other allehc forms of human PSCA PSCA peptides containing particularly interesting structures can be predicted and/or identified using vanous analytical techniques well known m the art. mcluding, for example, the methods of Chou-Fasman. Garnier-Robson, Kyte-Doohttle, Eisenberg, Kaφlus-Schultz or Jameson- Wolf analysis, or on the basis of immunogemαty As examples, hydrophobiαty and Chou-Fasman plots of human PSCA are provided m FIGS 4 and 5, respectively Fragments containing such residues are particularly useful in generating subunit specific anti-PSCA antibodies or in identifying cellular factors that bmd to PSC

The PSCA proteins of the invention may be useful for a vanety of purposes, mcluding but not limited to their use as diagnostic and/or prognostic markers of prostate cancer and as targets for vanous therapeutic modalities, as further descnbed below PSCA proteins may also be used to identify and isolate ligands and other agents that bmd to PSCA. In the normal prostate. PSCA is expressed exclusively m a subset of basal cells, suggesting that PSCA may be used as a marker for a specific cell lineage within basal epithehum In additioa applicants' results suggest that this set of basal cells represent the target of neoplastic transformation Accordingly for example, therapeutic strategies designed to eliminate or modulate the molecular factors responsible for transformation may be specifically directed to this population of cells via the PSCA cell surface protein PSCA ANTIBODIES

The invention further provides antibodies that bmd to PSCA. The most preferred antibodies will selectively bmd to PSCA and will not bmd (or will bmd weakly) to non-PSCA proteins Anti-PSCA antibodies that are particularly contemplated mclude monoclonal and polyclonal antibodies as well as fragments containing the antigen bmdmg domam and/or one or more complement deternunmg regions of these antibodies

In one embodiment, the PSCA antibodies specifically bind to the extracellular domain of a PSCA protein In other embodiments, the PSCA antibodies specifically bind to other domains of a PSCA protein or precursor As will be understood by those skilled in the art. the regions or epitopes of a PSCA protein to which an antibody is directed may vary with the intended application For example, antibodies intended for use in an immunoassay for the detection of membrane-bound PSCA on viable prostate cancer cells should be directed to an accessible epitope on membrane- bound PSCA Examples of such antibodies are descnbed the Examples which follow Antibodies which recognize other epitopes may be useful for the identification of PSCA within damaged or dying cells, for the detection of secreted PSCA proteins or fragments thereof The invention also encompasses antibody fragments which specifically recognize an PSCA protein As used herein, an antibody fragment is defined as at least a portion of the vanable region of the lmmunoglobulin molecule which binds to its target, l e . the antigen binding region Some of the constant region of the lmmunoglobulin may be included

The prostate-specificity of PSCA. its overexpression in both androgen-dependent and androgen- mdependent prostate cancer cells, and the cell surface location of PSCA represent charactenstics of an excellent marker for screemng, diagnosis, prognosis, and follow-up assays and imaging methods In addition, these charactenstics indicate that PSCA may be an excellent target for therapeutic methods such as targeted antibody therapy, immunotherapy, and gene therapy

PSCA antibodies of the invention may be particularly useful in diagnostic assays, imaging methodologies, and therapeutic methods in the management of prostate cancer The invention provides vanous immunological assays useful for the detection of PSCA proteins and for the diagnosis of prostate cancer Such assays generally compnse one or more PSCA antibodies capable of recognizing and bmdmg a PSCA protein, and mclude vanous immunological assay formats well known in the art. mcludmg but not limited to vanous types of radioimmunoassays. enzyme-linked immunosoibent assavs (ELISA), enzyme-hnked lmmunofluorescent assays (ELIFA). and the like In addition, immunological imaging methods capable of detecting prostate cancer are also provided by the invention, including but limited to radioscintigraphic imaging methods using labeled PSCA antibodies Such assavs may be clinically useful m the detection, monitoring, and prognosis of prostate cancer

In one embodiment PSCA antibodies and fragments thereof are used for detecting the presence of a prostate cancer, PIN or basal epithelial cell expressing a PSCA protein The presence of such PSCA + cells within vanous biological samples, including serum, prostate and other tissue biopsy specimens, other tissues such as bone, unne, etc , may be detected with PSCA antibodies In addition, PSCA antibodies may be used in vanous imaging methodologies, such as lmmunoscintigraphy with Induιm-111 (or other isotope) conjugated antibody For example, an imaging protocol similar to the one recently descnbed using an In- 111 conjugated anti-PSMA antibody may be used to detect reαurent and metastatic prostate carcinomas (Sodee et al . 1997, Clin Nuc Med 21 759-766) In relation to other markers of prostate cancer, such as PSMA for example, PSCA may be particularly useful for targeting androgen receptor-negative prostate cancer cells PSCA antibodies may also be used therapeutically to inhibit PSCA function

PSCA antibodies may also be used in methods for purifying PSCA proteins and peptides and for isolating PSCA homologues and related molecules For example, m one embodiment, the method of purifying a PSCA protein comprises incubating a PSCA antibody, which has been coupled to a solid matrix, with a lysate or other solution containing PSCA under conditions which permit the PSCA antibody to bmd to PSCA, washing the solid matrix to eliminate lrnpunties, and eluting the PSCA from the coupled antibody

Additionally. PSCA antibodies may be used to isolate PSCA positive cells using cell sorting and purification techniques The presence of PSCA on prostate tumor cells may be used to distinguish and isolate human prostate cancer cells from other cells In particular. PSCA antibodies may be used to isolate prostate cancer cells from xenograft tumor tissue, from cells in culture, etc . using antibody-based cell sorting or affinity purification techniques Other uses of the PSCA antibodies of the invention include generating anti-idiotypic antibodies that mimic the PSCA protein

The ability to generate large quantities of relatively pure human prostate cancer cells which can be grown in tissue culture or as xenograft tumors in ammal models (e g , SCID or other immune deficient mice) provides many advantages, including, for example, permitting the evaluation of vanous transgenes or candidate therapeutic compounds on the growth or other phenotypic charactenstics of a relatively homogeneous population of prostate cancer cells Additionally this feature of the invention also permits the isolation of highly ennched preparations of human prostate cancer specific nucleic acids m quantities sufficient for vanous molecular mampulations For example, large quantities of such nucleic acid preparations will assist in the identification of rare genes with biological relevance to prostate cancer disease progression Another valuable application of this aspect of the invention is the ability to analyze and expenment with relatively pure preparations of viable prostate tumor cells cloned from individual patients with localh advanced or metastatic disease In this way. for example, an individual patient s prostate cancer cells may be expanded from a limited biopsy sample and then tested for the presence of diagnostic and prognostic genes, proteins, chromosomal abenations, gene expression profiles, or other relevant genotypic and phenotypic charactenstics. without the potentially confounding vanable of contaminating cells In addition, such cells may be evaluated for neoplastic aggressiveness and metastatic potential in ammal models Similarly, patient-specific prostate cancer vaccines and cellular lmmunotherapeutics may be created from such cell preparations

Vanous methods for the preparation of antibodies are well known m the art For example, antibodies may be prepared by immunizing a suitable mammalian host using a PSCA protein, peptide, or fragment, m isolated or unmunoconjugated form (Harlow, Antibodies. Cold Spring Harbor Press, NY (1989)) In addition, fusion proteins of PSCA may also be used, such as a PSCA GST-fusion protein Cells expressing or overexpressing PSCA may also be used for immunizations Similarly, any cell engineered to express PSCA may be used This strategy may result in the production of monoclonal antibodies with enhanced capaαties for recognizing endogenous PSC

The ammo acid sequence of PSCA presented herein may be used to select specific regions of the PSCA protem for generating antibodies For example, hydrophobiαty and hydrophihαty analyses of the PSCA ammo acid sequence may be used to identify hydrophihc regions m the PSCA structure Regions of the PSCA protem that show lmmunogemc structure, as well as other regions and domains, can readily be identified using vanous other methods known m the art. such as Chou-Fasman, Garnier-Robsoα Kyte- Doohttle. Eisenberg Kaφlus-Schultz or Jameson-Wolf analysis Fragments contammg these residues are particularly suited in generating specific classes of anti-PSCA antibodies Particularly useful fragments mclude. but are not limited to. the sequences TARIRAVGLLTVISK and VDDSQDYYVGKK As descnbed in Example 2, below, a rabbit polyclonal antibody was generated against the former fragment prepared as a synthetic peptide, and affinity purified using a PSCA-glutathione S transferase fusion protein Recognition of PSCA by this antibody was established by lmmunoblot and immunoprecipitation analysis of extracts of 293T cells transfected with PSCA and a GST-PSCA fusion protein This antibody also identified the cell surface expression of PSCA in PSCA- transfected 293T and LAPC-4 cells using fluorescence activated cell sorting (FACS)

Methods for prepanng a protein for use as an lmmunogen and for prepanng lmmunogemc conjugates of a protem with a earner such as BSA. KLH or other earner proteins are well known m the art In some circumstances, direct conjugation using, for example, carbodumide reagents may be used, m other instances linking reagents such as those supplied by Pierce Chemical Co . Rockford. IL, may be effective Administration of a PSCA immunogen is conducted generally by injection over a suitable time penod and with use of a suitable adjuvant, as is generally understood in the art During the immunization schedule, titers of antibodies can be taken to determine adequacy of antibody formation

While the polyclonal antisera produced m this way may be satisfactory for some applications, for pharmaceutical compositions, monoclonal antibody preparations are preferred. Immortalized cell lines which secrete a desired monoclonal antibody mav be prepared using the standard method of Kohler and Milstein or modifications which effect immortalization of lymphocytes or spleen cells, as is generally known The immortalized cell lines secreting the desired antibodies are screened by lmmunoassay m which the antigen is the PSCA protem or PSCA fragment When the appropnate immortalized cell culture secreting the desired antibody is identified, the cells can be cultured either m vitro or by production in asαtes fluid

The desired monoclonal antibodies are then recovered from the culture supernatant or from the asαtes supernatant Fragments of the monoclonals or the polvclonal antisera which contain the lmmunologically significant portion can be used as antagonists, as well as the intact antibodies Use of lmmunologically reactive fragments, such as the Fab. Fab', of F(ab')₂ fragments is often preferable, espeαalh m a therapeutic context, as these fragments are generally less lmmunogenic than the whole mrmunoglobulin

The generation of two monoclonal antibodies (MAbs) capable of bmdmg to cell surface PSCA is descnbed m Example 5 Epitope mappmg of these MAbs mdicates that they recognize different epitopes on the PSCA protem, one recognizing an epitope withm the carboxy-ternunal region and the other recognizing an epitope within the ammo-terminal region Such PSCA antibodies may be particularly well suited to use in a sandwich-formatted ELISA, given their differing epitope bmdmg charactenstics

The antibodies or fragments may also be produced, using current technology, by recombinant means Regions that bmd specifically to the desired regions of the PSCA protem can also be produced m the context of chimeπc or CDR grafted antibodies of multiple species ongm

The antibody or fragment thereof of the invention may be labeled with a detectable marker or conjugated to a second molecule, such as a cytotoxic agent, and used for targeting the second molecule to an PSCA positive cell (Vitetta, E S et al , 1993. Immunotoxin therapy, in DeVita. Jr V T et al . eds. Cancer Pnnciples and Practice of Oncology, 4th ed . J B Lippmcott Co Philadelphia, 2624-2636) Examples of cytotoxic agents include, but are not limited to ncin doxorubicin. daunorubiαn. taxol. ethiduim bromide, mitomycin, etoposide. tenoposide. vincnstine vinblastine. colchicine, dihvdroxv anthracm dione. actinomvcin D, diphtena toxin. Pseudomonas exotoxin (PE) A, PE40, ncin, abnn, and glucocorticoid and other chemotherapeutic agents, as well as radioisotopes Suitable detectable markers include, but are not limited to, a radioisotope. a fluorescent compound, a biolununescent compound, chemiluminescent compound, a metal chelator or an enzyme

PSCA antibodies may be used systemically to treat prostate cancer PSCA antibodies conjugated with toxic agents, such as ncin. as well as unconjugated antibodies may be useful therapeutic agents naturally targeted to PSCA-beanng prostate cancer cells Techmques for conjugating therapeutic agents to antibodies are well known (see, e g . Arnon et al , "Monoclonal Antibodies For Immunotargeting Of

Drup In Cancer Therapy", in Monoclonal Antibodies And Cancer Therapy, Reisfeld et al (eds ), pp 243-

56 (Alan R Liss. Inc 1985). Hellstrom et al , "Antibodies For Drug Delivery", m Controlled Drug Delivery (2nd Ed). Robinson et al (eds ), pp 623-53 (Marcel Dekker. Inc 1987). Thorpe, "Antibody

Carners Of Cytotoxic Agents In Cancer Therapy A Review", m Monoclonal Antibodies '84 Biological

And Clinical Applications. Pinchera et al (eds ), pp 475-506 (1985). and Thorpe et al , "The Preparation

And Cytotoxic Properties Of Antibody-Toxin Conjugates", Immunol Rev . 62 119-58 (1982)) The use of

PSCA antibodies as therapeutic agents is further descnbed in the subsection "PROSTATE CANCER IMMUNOTHERAPY' below

PSCA-ENCODING NUCLEIC ACID MOLECULES

Another aspect of the invention provides vanous nucleic acid molecules encoding PSCA proteins and fragments thereof, preferably in isolated form, including DNA, RNA, DNA/RNA hybnd and related molecules, nucleic acid molecules complementary to the PSCA coding sequence or a part thereof, and those which hybndize to the PSCA gene or to PSCA-encoding nucleic acids

Particularly preferred nucleic aαd molecules will have a nucleotide sequence substantially identical to or complementary to the human or munne DNA sequences herem disclosed Specifically contemplated are genomic DNA, cDNAs, πbozymes, and antisense molecules, as well as nucleic acids based on an alternative backbone or including alternative bases, whether denved from natural sources or synthesized

For example, antisense molecules can be RNAs or other molecules, including peptide nucleic aαds

(PNAs) or non-nucleic acid molecules such as phosphorothioate denvatives, that specifically bind

DNA or RNA in a base pair-dependent manner A skilled artisan can readily obtain these classes of nucleic acid molecules usmg the herem descnbed PSCA sequences For convemence, PSCA-encodmg nucleic acid molecules will be referred to herem as PSCA-encodmg nucleic aαd molecules. PSCA genes. or PSCA sequences

The nucleotide sequence of a cDNA encoding one allehc form of human PSCA is provided in FIG 1A The nucleotide sequence of a cDNA encoding a munne PSCA homologue ("munne PSCA") is provided in FIG 2 Genomic clones of human and munne PSCA have also been isolated as descnbed m Example 4 Both the human and munne genomic clones contain three exons encoding the translated and 3' untranslated regions of the PSCA gene A fourth exon encoding a 5' untranslated region is presumed to exist based on PSCA's homology to other members of the Ly-6 and Thy-1 gene families (FIG 8)

The human PSCA gene maps to chromosome 8q24 2 Human stem cell antigen 2 (RIG-E), as well as one other recently identified human Ly-6 homologue (E48) are also localized to this region, suggesting that a large family of related genes may exist at this locus (Brakenhoff et al . 1995, supra, Mao et al , 1996, Proc Natl Acad Sci USA 93 5910-5914) Intnguingly. chromosome 8q has been reported to be a region of allelic gam and amplification in a majonty of advanced and recurrent prostate cancers (Cher et al . 1994, Genes Chrom Cancer 11 153-162) c-myc localizes proximal to PSCA at chromosome 8q24 and extra copies of c-myc (either through allehc gam or amplification) have been found m 68% of pnmary prostate tumors and 96% of metastases (Jenkins et al , 1997, Cancer Res 57 524-531)

Embodiments of the PSCA-encoding nucleic acid molecules of the invention include pnmers. which allow the specific amplification of nucleic acid molecules of the invention or of any specific parts thereof, and probes that selectively or specifically hybndize to nucleic acid molecules of the invention or to any part thereof The nucleic acid probes can be labeled with a detectable marker Examples of a detectable marker include, but are not limited to, a radioisotope, a fluorescent compound a biolununescent compound a chemiluminescent compound a metal chelator or an enzyme Such labeled probes can be used to diagnosis the presence of a PSCA protein as a means for diagnosing cell expressing a PSCA protem Technologies for generating DNA and RNA probes are well known

As used herein, a nucleic aαd molecule is said to be "isolated" when the nucleic aαd molecule is substantially separated from contaminant nucleic aαd molecules that encode polypeptides other than PSCA. A skilled artisan can readily employ nucleic aαd isolation procedures to obtam an isolated PSCA- encodmg nucleic aαd molecule

The mvention further provides fragments of the PSCA-encodmg nucleic aαd molecules of the present mvention As used herein, a fragment of a PSCA-encodmg nucleic aαd molecule refers to a small portion of the entire PSCA-encodmg sequence The size Of the fragment will be determined by its intended use For example, if the fragment is chosen so as to encode an active portion of the PSCA protein, such an active domain, effector bmdmg site or GPI bmdmg domam then the fragment will need to be large enough to encode the functional regιon(s) of the PSCA protem If the fragment is to be used as a nucleic acid probe or PCR pnmer. then the fragment length is chosen so as to obtam a relatively small number of false positives during probmg/pπmmg Fragments of human PSCA that are particularly useful as selective hybndization probes or PCR primers can be readily identified from the entire PSCA sequence usmg art- known methods One set of PCR primers that are useful for RT-PCR analysis compnse 5' - TGCTTGCCCTGTTGATGGCAG - and 3' - CCAGAGCAGCAGGCCGAGTGCA -

Another class of fragments of PSCA-encodmg nucleic aαd molecules are the expression control sequence found upstream and downstream from the PSCA-encodmg region found m genomic clones of the PSCA gene Specifically, prostate specific expression control elements can be identified as being 5' to the PSCA- encodmg region found m genomic clones of the PSCA gene Such expression control sequence are useful m generating expression vectors for expressing genes m a prostate specific fashion A skilled artisan can readily use the PSCA cDNA sequence herem descnbed to isolate and identify genomic PSCA sequences and the expression control elements found m the PSCA gene

METHODS FOR ISOLATING OTHER PSCA-ENCODING NUCLEIC ACID MOLECULES

The PSCA-encodmg nucleic aαd molecules descnbed herem enable the isolation of PSCA homologues, alternatively shced isoforms, allehc vanants. and mutant forms of the PSCA protem as well as then- codmg and gene sequences The most preferred source of PSCA homologs are mammalian organisms

For example, a portion of the PSCA-encodmg sequence herem descnbed can be synthesized and used as a probe to retneve DNA encoding a member of the PSCA family of proteins from organisms other than human, allehc vanants of the human PSCA protem herem descnbed and genomic sequence containing the PSCA gene Oligomers containing approximately 18-20 nucleotides (encoding about a 6-7 am o aαd stretch) are prepared and used to screen genomic DNA or cDNA hbranes to obtam hybndization under stringent conditions or conditions of sufficient stringency to eliminate an undue level of false positives In a particular embodiment, cDNA encoding human PSCA was used to isolate a full length cDNA encoding the munne PSCA homologue as descnbed m Example 3 herem The munne clone encodes a protem with 70% am no acid identity to human PSCA.

In addition, the ammo aαd sequence of the human PSCA protem may be used to generate antibody probes to screen expression hbranes prepared from cells Typically, polyclonal antiserum from mammals such as rabbits immunized with the purified protem (as descnbed below) or monoclonal antibodies can be used to probe an expression library, prepared from a target organism, to obtam the appropriate codmg sequence for a PSCA homologue The cloned cDNA sequence can be expressed as a fusion protein, expressed directly using its own control sequences, or expressed bv constructing an expression cassette usmg control sequences appropnate to the particular host used for expression of the enzyme

Genomic clones containing PSCA genes may be obtained usmg molecular cloning methods well known m the art In one embodiment, a human genomic clone of approximately 14kb containing exons 1-4 of the PSCA gene was obtained bv screening a lambda phage library with a human PSCA cDNA probe, as more completely descnbed m Example 4 herem In another embodiment, a genomic clone of approximately lOkb containing the munne PSCA gene was obtained by screemng a munne BAC (bactenal artifiαal chromosome) library with a munne PSCA cDNA (also descnbed m Example 4)

Additionally, pairs of oligonucleotide primers can be prepared for use in a polymerase chain reaction (PCR) to selectively amplify/clone a PSCA-encodmg nucleic aαd molecule, or fragment thereof A PCR denature/anneal/extend cycle for usmg such PCR primers is well known m the art and can readily be adapted for use in isolating other PSCA-encodmg nucleic aαd molecules Regions of the human PSCA gene that are particularly well suited for use as a probe or as primers can be readily identified

Non-human homologues of PSCA, naturally occurnng allehc vanants of PSCA and genomic PSCA sequences will share a high degree of homology to the human PSCA sequences herem descnbed In general, such nucleic aαd molecules will hybndize to the human PSCA sequence under stnngent conditions Such sequences will typically contain at least 70% homology, preferably at least 80%. most preferably at least 90% homology to the human PSCA sequence "Stnngent conditions" are those that (1) employ low lomc strength and high temperature for washing for example. 0015M NaCl/00015M sodium titrate/0 1% SDS at 50EC , or (2) employ during hybndization a denatunng agent such as formamide. for example. 50% (vol vol) formamide with 0 1% bovine serum albumin 0.1% Fico VO 1% polyvmylpyrrohdone/50 mM sodium phosphate buffer at pH 6 5 with 750 mM NaCl. 75 mM sodium αtrate at 42EC Another example is use of 50% formamide. 5 x SSC (0 75M NaCl. 0075 M sodium citrate), 50 mM sodium phosphate (pH 6 8), 0 1% sodium pyrophosphate, 5 x Denhardt's solution, sonicated salmon sperm DNA (50 Tg/ml). 0 1% SDS. and 10% dextran sulfate at 42EC . with washes at 42EC 0 2 x SSC and 0 1% SDS A skilled artisan can readily determine and vary the stringency conditions appropriately to obtam a clear and detectable hybndization signal

RECOMBINANT DNA MOLECULES CONTAINING PSCA-ENCODING NUCLEIC ACIDS

Also provided are recombinant DNA molecules (rDNAs) that contain a PSCA-encodmg sequences as herem descnbed or a fragment thereof As used herein, a rDNA molecule is a DNA molecule that has been subjected to molecular manipulation tn vitro Methods for generating rDNA molecules are well known in the art, for example, see Sambrook et al , Molecular Cloning (1989) In the prefened rDNA molecules of the present invention, a PSCA-encodmg DNA sequence that encodes a PSCA protem or a fragment of PSCA. is operably linked to one or more expression control sequences and/or vector sequences The rDNA molecule can encode either the entire PSCA protein, or can encode a fragment of the PSCA protein The choice of vector and/or expression control sequences to which the PSCA-encodmg sequence is operably linked depends directly, as is well known m the art, on the functional properties desired e g protem expression, and the host cell to be transformed A vector contemplated by the present mvention is at least capable of directing the replication or insertion mto the host chromosome, and preferably also expression, of the PSCA-encodmg sequence mcluded m the rDNA molecule

Expression control elements that are used for regulating the expression of an operably linked protem encoding sequence are known m the art and include, but are not limited to, induαble promoters, constitutive promoters, secretion signals, enhancers, transαiption terminators and other regulaton elements Preferably, an mduαble promoter that is readily controlled such as being responsive to a nutnent in the host cell's medium, is used

In one embodiment, the vector containmg a PSCA-encodmg nucleic aαd molecule will mclude a prokaryotic rephcon, I e . a DNA sequence having the ability to direct autonomous replication and maintenance of the recombinant DNA molecule mtrachromosomally m a prokaryotic host cell, such as a bactenal host cell, transformed therewith Such rephcons are well known m the art In addition, vectors that mclude a prokaryotic rephcon may also mclude a gene whose expression confers a detectable marker such as a drug resistance Typical bactenal drug resistance genes are those that confer resistance to ampiαlhn or tetracychne

Vectors that mclude a prokaryotic rephcon can further mclude a prokaryotic or viral promoter capable of directing the expression (transcπption and translation) of the PSCA-encodmg sequence m a bactenal host cell, such as E coli A promoter is an expression control element formed by a DNA sequence that permits bmdmg of RNA polymerase and transcnption to occur Promoter sequences compatible with bactenal hosts are typically provided m plasmid vectors containmg convement restπction sites for insertion of a DNA segment of the present mvention Vanous viral vectors well known to those skilled m the art ma\ also be used such as. for example, a number of well known retroviral vectors

Expression vectors compatible with eukaryotic cells, preferably those compatible with vertebrate cells, can also be used to vanant rDNA molecules that contam a PSCA-encodmg sequence Eukaiyotic cell expression vectors are well known m the art and are available from several commerαal sources Typically, such vectors are provided containing convement restnction sites for insertion of the desired DNA. segment Typical of such vectors are PSVL and pKSV-10 (Pharmacia), pBPV-l/pML2d (International Biotechnologies. Inc ). pTDTl (ATCC, #31255) the veαor pCDM8 descnbed herein, and the like eukarvotic expression vectors

Eukarvotic cell expression vectors used to construct the rDNA molecules of the present invention ma\ further mclude a selectable marker that is effective m an eukaryotic ceil, preferably a drug resistance selection marker A preferred drug resistance marker is the gene whose expression results in neomyαn resistance. 1 e . the neomyαn phosphotransferase (neo) gene Southern et al . J Mol Anal Genet (1982) 1 327-341 Alternatively, the selectable marker can be present on a separate plasmid and the two vectors are mtroduced b> cotransfection of the host cell, and selected by cultunng m the presence of the appropπate drug for the selectable marker

In accordance with the practice of the invention, the vector can be a plasmid cosmid or phage vector encoding the cDNA molecule discussed above Additionally, the invention provides a host- vector system compnsmg the plasmid cosmid or phage vector transfected into a suitable eucaryotic host cell Examples of suitable eucaryotic host cells include a yeast cell, a plant cell, or an animal cell, such as a mammalian cell Examples of suitable cells include the LnCaP. LAPC-4, and other prostate cancer cell lines The host-vector system is useful for the production of an PSCA protein Alternatively, the host cell can be prokaryotic. such as a bactenal cell

TRANSFORMED HOST CELLS

The mvention further provides host cells transformed with a nucleic aαd molecule that encodes a PSCA protein or a fragment thereof The host cell can be either prokaryotic or eukaryotic Eukaryotic cells useful for expression of a PSCA protem are not limited so long as the cell line is compatible with cell culture methods and compatible with the propagation of the expression vector and expression of a PSCA gene Preferred eukaryotic host cells mclude, but are not limited to, yeast, insect and mammalian cells, preferably vertebrate cells such as those from a mouse, rat, monkey or human fibroblastic cell line Prostate cancer cell lines, such as the LnCaP and LAPC-4 cell lines may also be used Any prokaryotic host can be used to express a PSCA-encodmg rDNA molecule The preferred prokaryotic host is E coli

Transformation of appropπate cell hosts with an rDNA molecule of the present invention is accomplished by well known methods that typically depend on the type of vector used and host system employed With regard to transformation of prokaryotic host cells, electroporation and salt treatment methods are typically employed see, for example, Cohen et al , Proc Acad Set USA (1972) 69 2110, and Mamatis et al Molecular Clonmg. A Laboratory Manual, Cold Sprmg Harbor Laboratory, Cold Sprmg Harbor. NY (1982) With regard to transformation of vertebrate cells with vectors containmg rDNAs, electroporatioa cationic hpid or salt treatment methods are typically employed see. for example. Graham et al . I Irol (1973) 52 456. Wigler et al . Proc Natl Acad Sci USA (1979) 76 1373-76

Successfully transformed cells, I e , cells that contam an rDNA molecule of the present mvention, can be identified bv well known techniques For example, cells resulting from the introduction of an rDNA of the present mvention can be cloned to produce single colonies Cells from those colonies can be harvested lysed and their DNA content examined for the presence of the rDNA usmg a method such as that descnbed by Southern. JMol Biol (1975) 98 503. or Berent et al . Biotech (1985) 3 208 or the proteins produced from the cell assaved via an immunological method

RECOMBINANT METHODS OF GENERATING PSCA PROTEINS

The mvention further provides methods for producmg a PSCA protem usmg one of the PSCA-encodmg nucleic aαd molecules herem descnbed In general terms, the production of a recombinant PSCA protem typically mvolves the following steps

First a nucleic acid molecule is obtamed that encodes a PSCA protem or a fragment thereof, such as the nucleic aαd molecule depicted m FIG 1A. The PSCA-encodmg nucleic acid molecule is then preferably placed in an operable linkage with suitable control sequences, as descnbed above, to generate an expression unit containing the PSCA-encodmg sequence The expression unit is used to transform a suitable host and the transformed host is cultured under conditions that allow the production of the PSCA protem Optionally the PSCA protem is isolated from the medium or from the cells, recovery and punfication of the protem may not be necessary m some instances where some lmpunties may be tolerated

Each of the foregoing steps may be done m a vanety of ways For example, the desired codmg sequences may be obtamed from genomic fragments and used directly m an appropnate host The construction of expression veαors that are operable in a vanety of hosts is accomplished usmg an appropriate combination of rephcons and control sequences The control sequences, expression vectors, and transformation methods are dependent on the type of host cell used to express the gene and were discussed m detail earlier Suitable resrnction sites can, if not normally available, be added to the ends of the codmg sequence so as to provide an exαsable gene to insert mto these vectors A skilled artisan can readily adapt any host/expression system known m the art for use with PSCA-encodmg sequences to produce a PSCA protem

ASSAYS FOR IDENTIFYING PSCA LIGANDS AND OTHER BINDING AGENTS

Another aspect of the mvention relates to assays and methods which can be used to identify PSCA hands and other agents and cellular constituents that bmd to PSCA. Specifically. PSCA hgands and other agents and cellular constituents that bmd to PSCA can be identified by the abihtv of the PSCA hgand or other agent or constituent to bmd to PSCA and/or the ability to inhibit/stimulate PSCA activm Assays for PSCA activity (e g . bmdmg) usmg a PSCA protem are suitable for use m high through-put screemng methods In one embodiment, the assay compnses mixing PSCA with a test agent or cellular extract After mixing under conditions that allow assoαation of PSCA with the agent or component of the extract the mixture is analyzed to determine if the agent/component is bound to PSCA Bmdmg agents/components are identified as being able to bmd to PSCA Alternatively or consecutively, PSCA activity' can be directly assessed as a means for identifying agonists and antagonists of PSCA activity

Alternatively, targets that bmd to a PSCA protem can be identified usmg a yeast two-h bπd system or usmg a binding-capture assay In the yeast two hybnd system, an expression unit encoding a fusion protem made up of one subunit of a two subunit tianscnption factor and the PSCA protem is mtroduced and expressed m a yeast cell The cell is further modified to contam (1) an expression umt encodmg a detectable marker whose expression requires the two subunit tianscnption factor for expression and (2) an expression umt that encodes a fusion protem made up of the second subunit of the transcnption factor and a cloned segment of DNA. If the cloned segment of DNA encodes a protem that bmds to the PSCA protem. the expression results m the interaction of the PSCA and the encoded protem This bnngs the two subunits of the transcnption factor mto bmdmg proximity, allowing reconstitution of the transcnption factor This results m the expression of the detectable marker The yeast two hybnd system is particularly useful in sαeenmg a library of cDNA encodmg segments for cellular bmdmg partners of PSCA.

PSCA proteins which may be used m the above assays mclude, but are not limited to, an isolated PSCA protein, a fragment of a PSCA protem. a cell that has been altered to express a PSCA protem or a fraction of a cell that has been altered to express a PSCA protem Further, the PSCA protem can be the entire PSCA protem or a defined fragment of the PSCA protem It will be apparent to one of ordinary skill m the art that so long as the PSCA protem can be assayed for agent bmdmg, e g , by a shift in molecular weight or activity, the present assay can be used

The method used to identify whether an agent/cellular component bmds to a PSCA protein will be based pπmanly on the nature of the PSCA protem used For example, a gel retardation assay can be used to determine whether an agent bmds to PSCA or a fragment thereof Alternatively, immunodetection and biochip technologies can be adopted for use with the PSCA protem A skilled artisan can readily employ numerous art-known techmques for determining whether a particular agent bmds to a PSCA protem

Agents and cellular components can be further tested for the ability to modulate the activity of a PSCA protem using a cell-free assay system or a cellular assay system As the activities of the PSCA protem become more defined functional assays based on the identified activity can be employed

As used herein, an agent is said to antagonize PSCA activity when the agent reduces PSCA activity The preferred antagonist will selectively antagonize PSCA not affecting any other cellular proteins Further. the preferred antagonist will reduce PSCA activity by more than 50%. more preferably by more than 90%. most preferably eliminating all PSCA activity

As used herem. an agent is said to agonize PSCA activity when the agent increases PSCA activiti- The prefened agonist will selectively agonize PSCA not affecting any other cellular proteins Further the preferred antagonist will increase PSCA activity by more than 50%. more preferably by more than 90%, most preferably more than doubting PSCA activity

Agents that are assayed m the above method can be randomly selected or rationally selected or designed As used herem an agent is said to be randomly selected when the agent is chosen randomly without considering the specific sequences of the PSCA protem An example of randomly selected agents is the use of a chemical library or a peptide combinatoπal library, or a growth broth of an organism or plant extract

As used herem, an agent is said to be rationally selected or designed when the agent is chosen on a nonrandom basis that takes mto account the sequence of the target site and/or its conformation in connection with the agent's action Agents can be rationally selected or rationally designed by utilizing the peptide sequences that make up the PSCA protem For example, a rationally selected peptide agent can be a peptide whose ammo aαd sequence is identical to a fragment of a PSCA protem

The agents tested m the methods of the present mvention can be. as examples, peptides. small molecules and vitamin denvatives. as well as carbohydrates A skilled artisan can readily recognize that there is no limit as to the structural nature of the agents used m the present screemng method One class of agents of the present invention are peptide agents whose ammo aαd sequences are chosen based on the ammo aαd sequence of the PSCA protem Small peptide agents can serve as competitive inhibitors of PSCA protem assembly

Peptide agents can be prepared using standard solid phase (or solution phase) peptide synthesis methods, as is known m the art In addition, the DNA encodmg these peptides may be synthesized usmg commercially available ohgonucleotide synthesis instrumentation and produced recombmantiy usmg standard recombinant production systems The production usmg solid phase peptide synthesis is necessitated if non-gene-encoded ammo aαds are to be mcluded

Another class of agents of the present mvention are antibodies lmmunoreactive with cπtical positions of the PSCA protem As descnbed above, antibodies are obtamed by immunization of suitable mammalian subjects with peptides. containmg as antigenic regions, those portions of the PSCA protem intended to be targeted by the antibodies Cntical regions may mclude the domains identified m Figures 4 and 5 Such agents can be used m competitive bmdmg studies to identify second generation inhibitory agents The cellular extracts tested m the methods of the present mvention can be. as examples, aqueous extracts of cells or tissues, organic extracts of cells or tissues or partially purified cellular fractions A skilled artisan can readily recognize that there is no limit as to the source of the cellular extraα used m the screemng method of the present mvention

Agents that bmd a PSCA protein, such as a PSCA antibody, can be used to modulate the activity of PSCA to target anticancer agents to appropnate mammalian cells, or to identify agents that block the interaction with PSCA Cells expressing PSCA can be targeted or identified by usmg an agent that bmds to PSCA

How the PSCA bmdmg agents will be used depends on the nature of the PSCA bmdmg agent For example, a PSCA binding agent can be used to deliver conjugated toxins, such a diphthena toxin, cholera toxin, non or pseudomonas exotoxm, to a PSCA expressing cell, modulate PSCA activity, to directly kill PSCA expressing cells, or m screens to identify competitive bmdmg agents For example, a PSCA inhibitory agent can be used to directly inhibit the growth of PSCA expressing cells whereas a PSCA binding agent can be used as a diagnostic agent

PROSTATE CANCER IMMUNOTHERAPY

The mvention provides vanous lmmunotherapeutic methods for treating prostate cancer, mcludmg antibody therapy, in vivo vaccines, and ex vivo lnimunotherapy approaches In one approach, the mvention provides PSCA antibodies which may be used systemically to treat prostate cancer For example, unconjugated PSCA antibody may be introduced mto a patient such that the antibody bmds to PSCA on prostate cancer cells an mediates the destruction of the cells, and the tumor, by mechanisms which may include complement-mediated cytolysis. antibody-dependent cellular cytotoxiαty, altermg the physiologic function of PSCA, and/or the inhibition of hgand bmdmg or signal transduction pathways PSCA antibodies conjugated to toxic agents such as πcm may also be used therapeutically to deliver the toxic agent directly to PSCA-beanng prostate tumor cells and thereby destroy the tumor

Prostate cancer immunotherapy usmg PSCA antibodies may follow the teachmgs generated from vanous approaches which have been successfully employed with respect to other types of cancer, mcludmg but not limited to colon cancer (Arlen et al . 1998, Cπt Rev Immunol 18 133-138). multiple myeloma (Ozaki et al . 1997. Blood 90 3179-3186. Tsunenaπ et al , 1997, Blood 90 2437-2444), gastnc cancer (Kasprzyk et al . 1992. Cancer Res 52 2771-2776). B-cell lymphoma (Funakoshi et al , 1996. J Immunther Emphasis Tumor Immunol 19 93-101). leukemia (Zhong et al , 1996, Leuk Res 20 581-589), colorectal cancer (Moun et al . 1994. Cancer Res 54 6160-6166), Velders et al . 1995. Cancer Res 55 4398-4403). and breast cancer (Shepardet al , 1991, J Chn Immunol 11 117-127) The mvention further provides vaccines formulated to contam a PSCA protein or fragment thereof The use of a tumor antigen in a vaccine for generating humoral and cell-mediated immunity for use m anticancer therapy is well known in the art and has been employed m prostate cancer usmg human PSMA and rodent PAP lmmunogens (Hodge et al . 1995. Int J Cancer 63 231-237, Fong et al , 1997, J Immunol 159 3113-3117) Such methods can be readily practiced by employing a PSCA protem, or fragment thereof, or a PSCA-encodmg nucleic aαd molecule and recombinant veαors capable of expressing and appropnately presenting the PSCA lmmunogen

For example, viral gene delivery systems may be used to dehver a PSCA-encodmg nucleic acid molecule Vanous viral gene dehveiy systems which can be used m the practice of this aspect of the mvention mclude. but are not limited to, vaccinia fowlpox, canarypox. adenovirus, influenza, pohovirus. adeno- associated virus, lentivirus. and sindbus virus (Restifo, 1996. OUT Opm Immunol 8 658-663) Non-viral delivery systems may also be employed by usmg naked DNA encodmg a PSCA protem or fragment thereof introduced mto the patient (e g , mtramuscularly) to induce an anti-tumor response In one embodiment, the full-length human PSCA cDNA may be employed In another embodiment PSCA nucleic aαd molecules encodmg specific cytotoxic T lymphocyte (CTL) epitopes may be employed CTL epitopes can be determined usmg specific algonthms (e g , Epimer, Brown University) to identify peptides within a PSCA protem which are capable of optimally binding to specified HLA alleles

Vanous ex vivo strategies may also be employed One approach mvolves the use of dendntic cells to present PSCA antigen to a patient's immune system Dendntic cells express MHC class I and π. B7 costimulator, and EL-12. and are thus highly speαahzed antigen presenting cells In prostate cancer, autologous dendntic cells pulsed with peptides of the prostate-specific membrane antigen (PSMA) are being used in a Phase I clinical tnal to stimulate prostate cancer patients' immune systems (Tjoa et al . 1996, Prostate 28 65-69, Mtuphy et al . 1996, Prostate 29 371-380) Dendntic cells can be used to present PSCA peptides to T cells in the context of MHC class I and II molecules In one embodiment, autologous dendntic cells are pulsed with PSCA peptides capable of bmdmg to MHC molecules In another embodiment, dendntic cells are pulsed with the complete PSCA protein Yet another embodiment involves engineeπng the overexpression of the PSCA gene in dendntic cells using vanous implementing vectors known in the art. such as adenovirus (Arthur et al , 1997, Cancer Gene Ther 4 17-25), retrovirus (Henderson et al , 1996, Cancer Res 56 3763-3770). lentivirus. adeno-associated virus. DNA transfection (Ribas et al . 1997. Cancer Res 57 2865- 2869). and tumor-denved RNA transfection (Ashley et al . 1997. J Exp Med 186 1177-1182)

Anti-idiotypic anti-PSCA antibodies can also be used m anti-cancer therapy as a vaccine for inducing an immune response to cells expressing a PSCA protein Specifically, the generation of anti-idiotypic antibodies is well known in the art and can readily be adapted to generate anti-idiotypic anti-PSCA antibodies that mimic an epitope on a PSCA protem (see, for example. Wagner et al , 1997, Hybndoma 16 33^0. Foon et al . 1995. J Chn Invest 96 334-342, Herlyn et al . 1996. Cancer Immunol Immunother 43 65-76) Such an anti-idiotypic antibody can be used m anti-idiotypic therapy as presently practiced with other anti-idiotypic antibodies directed against tumor antigens

Genetic immunization methods may be employed to generate prophylactic or therapeutic humoral and cellular immune responses directed against cancer cells expressing PSCA Using the PSCA-encodmg DNA molecules descnbed herein, constructs compnsing DNA encodmg a PSCA protein/imunogen and appropπate regulatory sequences may be injected directly mto muscle or skin of an mdividual. such that the cells of the muscle or skin take-up the construct and express the encoded PSCA protem/mrmunogen The PSCA protein immunogen may be expressed as a cell surface protein or be secreted Expression of the PSCA protein/immunogen results m the generation of prophylactic or therapeutic humoral and cellular lπimunity against prostate cancer Vanous prophylactic and therapeutic genetic immunization techmques known m the art may be used (for review, see information and references published at internet address www genvveb com)

METHODS FOR IDENTIFYING PSCA PROTEINS AND PSCA GENES AND RNA

The mvention provides methods for identifying cells, tissues or organisms expressing a PSCA protem or a PSCA gene Such methods can be used to diagnose the presence of cells or an organism that expresses a PSCA protem in vivo or in vitro The methods of the present mvention are particularly useful m the determi ng the presence of cells that mediate pathological conditions of the prostate Specifically, the presence of a PSCA protem can be identified by determmmg whether a PSCA protein, or nucleic aαd encodmg a PSCA protein, is expressed The expression of a PSCA protem can be used as a means for diagnosing the presence of cells, tissues or an organism that expresses a PSCA protem or gene

A vanety of immunological and molecular genetic techmques can be used to determine if a PSCA protem is expressed/produced m a particular cell or sample In general, an extract containmg nucleic aαd molecules or an extract containmg proteins is prepared The extract is then assayed to determine whether a PSCA protein, or a PSCA-encodmg nucleic aαd molecule, is produced m the cell

Vanous polynucleotide-based detection methods well known in the art may be employed for the detection of PSCA-encodmg nucleic acid molecules and for the detection of PSCA expressing cells m a biological specimen For example. RT-PCR methods may be used to selectively amplify a PSCA mRNA or fragment thereof, and such methods may be employed to identify cells expressing PSCA as descnbed m Example 1 below In a particular embodiment RT-PCR is used to detect micrometastauc prostate cancer cells or circulating prostate cancer cells Vanous other amplification type detection methods, such as. for example, branched DNA methods, and vanous well known hybndization assays usmg DNA or RNA probes mav also be used for the detection of PSCA-encodmg polynucleotides or PSCA expressing cells Vanous methods for the detection of proteins are well known m the art and may be employed for the detection of PSCA proteins and PSCA expressing cells To perform a diagnostic test based on proteins, a suitable protem sample is obtained and prepared usmg conventional techmques Protein samples can be prepared for example, simply by boiling a sample with SDS The extracted protem can then be analyzed to determine the presence of a PSCA protem usmg known methods For example, the presence of specific sized or charged vanants of a protem can be identified usmg mobility m an electπc filed Alternatively, antibodies can be used for detection purposes A stalled artisan can readily adapt known protem analytical methods to determine if a sample contains a PSCA protem

Alternatively, PSCA expression can also be used m methods to identify' agents that decrease the level of expression of the PSCA gene For example, cells or tissues expressing a PSCA protem can be contacted with a test agent to determine the effects of the agent on PSCA expression Agents that activate PSCA expression can be used as an agonist of PSCA activity whereas agents that decrease PSCA expression can be used as an antagonist of PSCA activity

PSCA PROMOTER AND OTHER EXPRESSION REGULATORY ELEMENTS

The mvention further provides the expression control sequences found 5' of the of the newly identified PSCA gene in a form that can be used m generating expression vectors and transgenic animals Specifically, the PSCA expression control elements, such as the PSCA promoter that can readily be identified as being 5' from the ATG start codon m the PSCA gene, can be used to direct the expression of an operably linked protem encodmg DNA sequence Since PSCA expression is confined to prostate cells. the expression control elements are particularly useful m directing the expression of an mtroduced transgene m a tissue specific fashion A skilled artisan can readily use the PSCA gene promoter and other regulatory elements m expression vectors usmg methods known m the art

GENERATION OF TRANSGENIC ANIMALS

Another aspect of the invention provides transgenic non-human mammals compnsing PSCA nucleic acids For example, m one application, PSCA-deficient non-human animals can be generated usmg standard knock-out procedures to inactivate a PSCA homologue or. if such animals are non-viable. mduαble PSCA homologue antisense molecules can be used to regulate PSCA homologue activity/expression Alternatively, an animal can be altered so as to contam a human PSCA-encodmg nucleic acid molecule or an antisense-PSCA expression umt that directs the expression of PSCA protem or the antisense molecule m a tissue specific fashion In such uses, a non-human mammal, for example a mouse or a rat is generated m which the expression of the PSCA homologue gene is altered by lnachvation or activation and/or replaced by a human PSCA gene This can be accomplished using a vanety of art-known procedures such as targeted recombination Once generated the PSCA homologue deficient animal, the animal that expresses PSCA (human or homologue) in a tissue specific manner, or an animal that expresses an antisense molecule can be used to (1) identify biological and pathological processes mediated bv the PSCA protein, (2) identify proteins and other genes that mteraα with the PSCA proteins, (3) identify agents that can be exogenously supplied to overcome a PSCA protem deficiency and (4) serve as an appropnate screen for identifying mutations withm the PSCA gene that increase or decrease activitv

For example, it is possible to generate transgemc mice expressing the human minigene encodmg PSCA m a tissue specific-fashion and test the effect of over-expression of the protem in tissues and cells that normally do not contam the PSCA protem This strategy has been successfully used for other genes, namely bcl-2 (Veis et al Cell 1993 75 229) Such an approach can readily be applied to the PSCA protein gene and can be used to address the issue of a potential beneficial or detrimental effect of the PSCA proteins in a specific tissue

COMPOSITIONS

The invention provides a pharmaceutical composition compnsing an PSCA nucleic acid molecule of the invention or an expression vector encoding an PSCA protem or encoding a fragment thereof and optionally, a suitable earner The invention additionally provides a pharmaceutical composition compnsing an antibody or fragment thereof which recognizes and binds an PSCA protein In one embodiment, the antibody or fragment thereof is conjugated or linked to a therapeutic drug or a cytotoxic agent

Suitable earners for pharmaceutical compositions include any matenal which when combined with the nucleic acid or other molecule of the invention retains the molecule's activity and is non-reactive with the subject's immune systems Examples include, but are not limited to, any of the standard pharmaceutical earners such as a phosphate buffered saline solution, water, emulsions such as oil/water emulsion, and vanous types of wetting agents Other earners may also include stenle solutions, tablets including coated tablets and capsules Typically such earners contain excipients such as starch, milk, sugar, certain types of clay, gelatin, steanc acid or salts thereof, magnesium or calcium stearate, talc, vegetable fats or oils, gums, glycols, or other known excipients Such earners may also include flavor and color additives or other ingredients Compositions compnsing such earners are formulated bv well known conventional methods Such compositions may also be formulated within vanous lipid compositions, such as. for example, liposomes as well as in vanous polvmenc compositions, such as polymer microspheres

The invention also provides a diagnostic composition compnsing a PSCA nucleic acid molecule, a probe that specifically hvbndizes to a nucleic acid molecule of the invention or to any part thereof, or an PSCA antibody or fragment thereof The nucleic acid molecule, the probe or the antibody or fragment thereof can be labeled with a detectable marker Examples of a detectable marker include, but are not limited to, a radioisotope, a fluorescent compound a bioluminescent compound a chemiluminescent compound a metal chelator or an enzyme Further, the invention provides a diagnostic composition compnsing a PSCA-specific pnmer pair capable of amplifying PSCA- encod g sequences using polymerase chain reaction methodologies, such as RT-PCR

EXAMPLES

EXAMPLE 1: IDENTIFICATION AND MOLECULAR CHARACTERIZATION OF A NOVEL PROSTATE-SPECIFIC CELL SURFACE ANTIGEN (PSCA)

MATERIALS AND METHODS

LAPC-4 Xenografts LAPC-4 xenografts were generated as descnbed in Klein et al. 1997, Nature Med 3 402-408

RDA Northern Analysis and RT-PCR Representational difference analysis of androgen dependent and independent LAPC-4 tumors was performed as previously descnbed (Braun et al , 1995. Mol

Cell Biol 15 4623-4630) Total RNA was isolated using Ultraspec^R RNA isolation systems

(Biotecx. Houston. TX) according to the manufacturer's instructions Northern filters were probed with a 660bp RDA fragment conesponding to the coding sequence and part of the 3 ' untranslated sequence of PSCA or a ~400bp fragment of PSA The human multiple tissue blot was obtained from Clontech and probed as specified For reverse transcnptase (RT)-PCR analysis, first strand cDNA was svnthesized from total RNA using the GeneAmp RNA PCR core kit (Perkin Elmer-Roche. New

Jersey) For RT-PCR of human PSCA transcnpts, pnmers 5^'- tgcttgccctgttgatggcag- and 3'- ccagagcagcaggccgagtgca- were used to amplify a -320 bp fragment Thermal cycling was performed by 25-25 cycles of 95° for 30 sec. 60° for 30sec and 72° for 1 min, followed by extension at 72° for 10 min Pnmers for GAPDH (Clontech) were used as controls For mouse PSCA. the pnmers used were 5' -ttctcctgctggccacctac- and 3' -gcagctcatcccttcacaat- In Situ Hybndization Assay for PSCA mRNA For mRNA in situ hybndization. recombinant plasmid pCR II (1 ug, Invrtrogen. San Diego, CA) containing the full-length PSCA gene was linearized to generate sense and antisense digoxigenin labeled nboprobes In situ hybndization was performed on an automated instrument (Ventana Gen II. Ventana Medical Systems) as previously descnbed (Magi-Galluzzi et al . 1997. Lab Invest 76 37-43) Prostate specimens were obtained from a previously descnbed database which has been expanded to -130 specimens (Magi-Galluzzi et al . supra) Slides were read and scored by two pathologists in a blinded fashion Scores of 0-3 were assigned according to the percentage of positive cells (0 = 0%, 1 = <25%, 2 = 25-50%, 3 = >50%) and the intensity of staining (0 = 0, 1 = 1+, 2 = 2+. 3 = 3+) The two scores were multiplied to give an overall score of 0-9

RESULTS

Human PSCA cDNA Representational Difference Analysis (RDA), a PCR-based subtractive hybndization technique, was used to compare gene expression between hormone dependent and hormone mdependent vanants of a human prostate cancer xenograft (LAPC-4) and to isolate cDNAs upregulated in the androgen-independent LAPC-4 subline Multiple genes were cloned sequenced and checked for differential expression One 660bp fragment (clone #15) was identified which was found to be highly overexpressed in xenograft tumors when compared with normal prostate Companson of the expression of this clone to that of PSA in normal prostate and xenograft tumors suggested that clone #15 was relatively cancer specific (FIG 9)

Sequence analysis revealed that clone #15 had no exact match m the databases, but shared 30% nucleotide homology with stem cell antigen 2, a member of the Thy-l/Ly-6 superfanulv of glycosylphosphatidylinositol (GPI)-anchored cell surface antigens Clone #15 encodes a 123 amino acid protein which is 30% identical to SCA-2 (also called RIG-E) and contains a number of highly conserved cysteine residues charactenstic of the Ly-6/Thy-l gene family (FIG 3) Consistent with its homology to a family of GPI-anchored proteins, clone #15 contains both an amino-terminal hydrophobic signal sequence and a carboxyl-terminal stretch of hydrophobic amino acids preceded by a group of small amino acids defining a cleavage/binding site for GPI linkage (Udenfnend and Kodukula. 1995. Ann Rev Biochem 64 563-591) It also contains four predicted N-glycosylation sites Because of its strong homology to the stem cell antιgen-2. clone #15 was renamed prostate stem cell antigen (PSCA) 5' and 3' PCR RACE analysis was then performed usmg cDNA obtained from the LAPC-4 androgen independent xenograft and the full length cDNA nucleotide sequence (mcludmg the codmg and untranslated regions) was obtamed The nucleotide sequence of the full length cDNA encodmg human PSCA is shown m FIG 1A and the translated ammo aαd sequence is shown in FIG IB and inFIG 3 PSCA Expression is Prostate-Specific The distnbution of PSCA mRNA in normal human tissues was examined bv Northern blot analysis The results, shown in FIG 9B. demonstrate that PSCA is expressed predominantly in prostate, with a lower level of expression present in placenta Small amounts of mRNA can be detected in kidney and small intestine after prolonged exposure and at approximately 1/100th of the level seen in prostate tissue Reverse transcnptase-polymerase chain reaction (RT-PCR) analysis of PSCA expression in normal human tissues also demonstrates that PSCA expression is restncted In a panel of normal tissues, high level PSCA mRNA expression was detected m prostate, with significant expression detected in placenta and tonsils (FIG 7A) RT- PCR analysis of PSCA mRNA expression in a vanety of prostate cancer xenografts prostate cancer cell lines and other cell lines, and normal prostate showed high level expression restncted to normal prostate, the LAPC-4 and LAPC-9 prostate cancer xenografts. and the ovanan cancer cell line A431 (FIG 7B)

The major PSCA transcnpt in normal prostate is -lkb (FIG 9B) Mouse PSCA expression was analyzed by RT-PCR in mouse spleen, liver, lung, prostate, kidney and testis Like human PSCA munne PSCA is expressed predominantly in prostate Expression can also be detected in kidney at a level similar to that seen for placenta in human tissues These data indicate that PSCA expression is largely prostate-specific

The expression of PSCA PSMA and PSA m prostate cancer cell lines and xenografts was compared by Northern blot analysis The results shown in FIG 10 demonstrate high level prostate cancer specific expression of both PSCA and PSMA whereas PSA expression is not prostate cancer specific

PSCA is Expressed bv a Subset of Basal Cells m Normal Prostate Normal prostate contains two major epithelial cell populations-secretory luminal cells and subjacent basal cells In situ hybndizations were performed on multiple sertions of normal prostate using an antisense nboprobe specific for PSCA to localize its expression As shown in FIG 11. PSCA is expressed exclusively in a subset of normal basal cells Little to no staining is seen in stroma. secretory cells or infiltrating lymphocytes Hybndization with sense PSCA nboprobes showed no background staining Hybndization with an antisense probe for GAPDH confirmed that the RNA m all cell types was intact Because basal cells represent the putative progemtor cells for the terminally differentiated secretory cells, these results suggest that PSCA may be a prostate-specific stem/progemtor cell marker (Bonkhoff et al . 1994. Prostate 24 114-118) In addition, since basal cells are androgen- lndependent, the association of PSCA with basal cells raises the possibility that PSCA may play a role in androgen-mdependent prostate cancer progression PSCA is Overexpressed in Prostate Cancer Cells The initial analysis companng PSCA expression in normal prostate and LAPC-4 xenograft tumors suggested that PSCA was overexpressed in prostate cancer As demonstrated by the Northern blot analysis shown FIG 9 LAPC-4 prostate cancer tumors strongly express PSCA. however, there is almost no detectable expression in normal prostate In contrast, PSA expression is clearly detectable in normal prostate, at levels 2-3 times those seen in the LAPC-4 tumors Thus, the expression of PSCA in prostate cancer appears to be the reverse of what is seen with PSA While PSA is expressed more strongly in normal than malignant prostate tissue. PSCA is expressed more highly m prostate cancer

To confirm the prostate-specificity of PSCA expression, one hundred twenty six paraffin-embedded prostate cancer specimens were analyzed by mRNA in situ hybndization for PSCA expression Specimens were obtained from pnmary tumors removed by radical prostatectomy or transurethral resection in all cases except one All specimens were probed with both a sense and antisense construct in order to control for background staimng Slides were assigned a composite score as descnbe under Matenals and Methods, with a score of 6 to 9 indicating strong expression and a score of 4 meamng moderate expression 102/126 (81%) of cancers stained strongly for PSCA while another 9/126 (7%) displayed moderate staimng (FIGS 11B and 11C) High grade prostatic intraepithelial neoplasia, the putative precursor lesion of invasive prostate cancer, stained strongly positive for PSCA in 82% (97/118) of specimens (Figure 3b) (Yang et al , 1997. Am J Path 150 693-703) Normal glands stained consistently weaker than malignant glands (FIG 11B) Nine specimens were obtamed from patients treated pnor to surgery with hormone ablation therapy Seven of nine (78%) of these residual presumably androgen-mdependent cancers overexpressed PSCA a percentage similar to that seen in untreated cancers Because such a large percentage of specimens expressed PSCA mRNA no statistical conelation could be made between PSCA expression and pathological features such as tumor stage and grade These results suggest that PSCA mRNA overexpression is a common feature of androgen-dependent and independent prostate cancer

PSCA is Expressed in Androgen Receptor Negative Prostate Cancer Cell Lines Although PSCA was imtially cloned using subtractive hybndization. Northern blot analysis demonstrated strong PSCA expression m both androgen-dependent and androgen-mdependent LAPC-4 xenograft tumors (FIG 9) Moreover. PSCA expression was detected in all prostate cancer xenografts and cell lines tested including the LAPC-4 cell line and xenograft. the LAPC-9 xenograft, and the LnCaP cell line (all androgen-dependent) as well as in the Al LAPC-4 xenograft subhne the LAPC-3 xenograft. the PC-3 and DU-145 cell lines, the Al LnCaP subhne, and the MatLyLu cell line (all androgen-mdependent) PSCA expression in the androgen-mdependent. androgen receptor-negative prostate cancer cell lines PC3 and DU145 was also detected by reverse-transcnptase polymerase chain reaction analysis These data suggest that PSCA can be expressed m the absence of functional androgen receptor

EXAMPLE 2: BIOCHEMICAL CHARACTERIZATION OF PSCA

MATERIALS AND METHODS

Polyclonal Antibodies and Immunoprecipitations Rabbit polyclonal antiserum was generated against the synthetic peptide -TARIRAVGLLTVISK- and affinity purified using a PSCA- glutathione S transferase fusion protein 293T cells were transiently transfected with pCDNA II (Invitrogen, San Diego, CA) expression vectors containing PSCA CD59. E25 or vector alone by calcium phosphate precipitation Immunoprecipitation was performed as previously descnbed (Harlow and Lane, 1988. Antibodies A Laboratory Manual (Cold Spnng Harbor Press)) Bnefly. cells were labeled with 500uCι of trans35S label (ICN, Irvine, CA) for six hours Cell lysates and conditioned media were incubated with lug of purified rabbit anti-PSCA antibody and 20ul protein A sepharose CL-4B (Pharmacia Biotech, Sweden) for two hours For deglycosylation. immunoprecipitates were treated overnight at 37° with lu N-glycosidase F (Boehnnger Mannheim) or 0 1 u neuramimdase (Sigma. St Louis. MO) for 1 hour followed by overmght in 2 5 mU O- glycosidase (Boehnnger Mannheim)

Flow Cvtometry For flow cytometnc analysis of PSCA cell surface expression, single cell suspensions were stained with 2ug/ml of purified anti-PSCA antibody and a 1 500 dilution of fluorescein isothiocyanate (FITC) labeled anti-rabbit IgG (Jackson Laboratones, West Grove. PA) Data was acquired on a FACScan (Becton Dickinson) and analyzed using LYSIS II software Control samples were stained with secondary antibody alone Glycosylphosphatidyl inositol linkage was analyzed by digestion of 2 X 10⁶ cells with 0 5 units of phosphatidylinositol-specific phosphohpase C (PI-PLC, Boehnnger Mannheim) for 90 mm at 37° C Cells were analyzed pnor to and after digestion by either FACS scanning or lmmunoblotting

RESULTS

PSCA is a GPI-Anchored Glvcoprotein Expressed on the Cell Surface The deduced PSCA amino acid sequence predicts that PSCA is heavily glycosylated and anchored to the cell surface through a GPI mechanism In order to test these predictions, we produced an affinity purified polyclonal antibody raised against a unique PSCA peptide (see Matenals and Methods) This peptide contains no glycosvlation sites and was predicted based on compaπson to the three dimensional structure of CD59 (another GPI-anchored PSCA homologue). to lie in an exposed portion of the mature protein (Kiefer et al . 1994. Biochem 33 4471-4482) Recognition of PSCA bv the affinity-purified antibody was demonstrated by lmmunoblot and immunoprecipitation analysis of extracts of 293T cells transfected with PSCA and a GST-PSCA fusion protein The polyclonal antibody immunoprecipitates predominantly a 24kd band from PSCA-transfected but not mock-transfected cells (FIG 12 A) Three smaller bands are also present, the smallest being ~10kd The lmmunoprecipitate was treated with N and O specific glycosidases in order to determine if these bands represented glycosylated forms of PSCA N-glycosidase F deglycosylated PSCA whereas O- glycosidase had no effect (FIG 12A) Some GPI-anchored proteins are known to have both membrane-bound and secreted forms (Fntz and Lowe, 1996. Am J Physiol 270 G176-G183) FIG 12B indicates that some PSCA is secreted in the 293T-overexpressιng system The secreted form of PSCA migrates at a lower molecular weight than the cell surface-associated form, perhaps reflecting the absence of the covalent GPI-linkage This result may reflect the high level of expression in the 293T cell line and needs to be confirmed in prostate cancer cell lines and in vivo

Fluorescence activated cell sorting (FACS) analysis was used to localize PSCA expression to the cell surface Nonpermeabilized mock-transfected 293T cells, PSCA-expressmg 293T cells and LAPC-4 cells were stained with affinity purified antibody or secondary antibody alone FIG 12C shows cell surface expression of PSCA in PSCA-transfected 293T and LAPC-4 cells, but not in mock- transfected cells To confirm that this cell surface expression is mediated by a covalent GPI-linkage, cells were treated with GPI-speαfic phosphohpase C (PLC) Release of PSCA from the cell surface by PLC was indicated by a greater than one log reduction in fluorescence intensity Recovery of PSCA in post digest conditioned medium was also confirmed by lmmunoblotting The specificity of phosphohpase C digestion for GPI-anchored proteins was confirmed by performing the same expenment on 293T cells transfected with the GPI-linked antigen CD59 or the non-GPI linked transmembrane protein E25a (Deleersmjder et al , 1996, J Biol Chem 271 19475-19482) PLC digestion reduced cell surface expression of CD59 to the same degree as PSCA but had no effect on E25 These results support the prediction that PSCA is a glycosylated GPI-anchored cell surface protein

EXAMPLE 3: ISOLATION OF cDNA ENCODING MURINE PSCA HOMOLOGUE

The human PSCA cDNA was used to search munne EST databases in order to identify homologues for potential transgenic and knockout expenments One EST obtained from fetal mouse and another from neonatal kidnev were 70% identical to the human cDNA at both the nucleotide and amino aαd levels The homology between the mouse clones and human PSCA included regions of divergence between human PSCA and its GPI-anchored homologues. indicating that these clones likely represented the mouse homologue of PSCA Alignment of these ESTs and 5' extension using RACE-PCR provided the entire coding sequence (FIG 2)

EXAMPLE 4: ISLOATION OF HUMAN AND MURINE PSCA GENES

MATERIALS AND METHODS

Genomic Clomng Lambda phage clones contaimng the human PSCA gene were obtained by screemng a human genomic library (Stratagene) with a human PSCA cDNA probe (Sambrook et al . 1989. Molecular Clomng (Cold Spnng Harbor)) BAC (bactenal artificial chromosome) clones contaimng the munne PSCA gene were obtained by screemng a munne BAC library (Genome Systems. St Louis. MO) with a munne PSCA cDNA probe A 14kb human Not I fragment and a lOkb munne Eco RI fragment were subcloned into pBluescnpt (Stratagene). sequenced and restnction mapped

Chromosome Mapping bv Fluorescence In Situ Hybndization Fluorescence in situ chromosomal analysis (FISH) was performed as previously descnbed using overlapping human lambda phage clones (Rowley et al.. 1990, Proc Natl Acad Sci USA 87 9358-9362)

RESULTS

Structure of PSCA Gene Human and munne genomic clones of approximately 14kb and lOkb. respeαively. were obtained and restnction mapped A schematic representation of the gene structures of human and munne PSCA and Ly-6/Thy-l is shown in FIG 8 Both the human and munne genomic clones contain three exons encoding the translated and 3 ^' untranslated regions of the PSCA gene A fourth exon encoding a 5' untranslated region is presumed to exist based on PSCA's homology to other members of the Ly-6 and Thy-1 gene families (FIG 8)

Human PSCA Gene Maps to Chromosome 8q24 2 Southern blot analysis of LAPC-4 genomic DNA revealed that PSCA is encoded bv a single copy gene Other Lv-6 gene family members contain four exons. including a first exon encoding a 5^' untranslated region and three additional exons encoding the translated and 3 ' untranslated regions Genomic clones of human and munne PSCA contaimng all but the presumed 5' first exon were obtained by screening lambda phage hbranes Mouse and human PSCA clones had a similar genomic organization The human clone was used to localize PSCA by fluorescence in situ hybndization analysis Cohybndization of overlapping human PSCA lambda phage clones resulted in specific labeling only of chromosome 8 (FIG 13) Ninety' seven percent of detected signals localized to chromosome 8q24, of which 87% were specific for chromosome 8q24 2 These results show that PSCA is located at chromosome 8 band q24 2

EXAMPLE 5 GENERATION OF MONOCLONAL ANTIBODIES RECOGNIZING DIFFERENT EPITOPES OF PSCA

MATERIALS AND METHODS

A GST-PSCA fusion protem immunogen was used to raise antibodies in mice using standard monoclonal antibody generation methodology Bnefly, the PSCA coding sequence conespondmg to amino acids 18 through 98 of the human PSCA amino acid sequence shown in FIG IB was PCR- amplified using the pnmer pair

5'- GGAGAATTCATGGCACTGCCCTGCTGTGCTAC 3'-GGAGAATTCCTAATGGGCCCCGCTGGCGTT

The amplified PSCA sequence was cloned into pGEX-2T (Pharmacia), used to transform E coli. and the fusion protem isolated

Flow cytometπc analysis of cell surface PSCA expression was earned out on LAPC-9 mouse prostate cancer xenograft cells, the prostate cancer cell line LAPC-4. or normal prostate epithelial cells (Clonetics) using MAbs 3E6 and 1G8 and the mouse polyclonal serum descnbed in Example 2 25.000 cells per sample were analyzed following staimng with a 1 to 10 dilution of either MAb 1G8. 3E6. or mouse polyclonal serum, followed by a 1 to 100 dilution of an FITC-labeled goat anti-mouse secondary antibody Background fluorescence (control) was determined by incubation of the samples with the secondary antibody only

Epitope mapping of anti-PSCA monoclonal antibodies was conducted by Western blot analysis of GST-PSCA fusion proteins Bnefly. 1 μg GST-PSCA fusion protein (amino acids 18 - 98) or a GST-PSCA amino terminal region protein (N-terminal. ammo acids 2-50), a GST-PSCA middle region protein (GST-middle, amino acids 46-109). or a GST-carboxyl terminal region protein (GST- C-termmal. amino acids 85-123) were separated on a 12% SDS-PAGE gel and transfened to nitrocellulose The membrane was probed with a 1 to 250 dilution of concentrated tissue culture supernatant of either 1G8 or 3E6 monoclonal antibody hybndomas and then with a peroxidase labeled secondary antibody and visualized by enhanced chemiluminesence RESULTS

Four hvbndoma clones were selected and the tissue culture supernatants evaluated by ELISA FACS. Western blot, and immunoprecipitation These analyses indicated that two of the clones produce MAbs. designated 3E6 and 1G8. which consistently recognize PSCA Cell surface expression analysis of PSCA expression on cancerous and normal prostate epithelial cells bv flow cytometrv using MAbs 3E6 and 1G8 and the polyclonal antibody descnbed in Example 2 is shown in FIG 14

PSCA MAbs 3E6 and 1G8 were epitope mapped by Western blot analysis of GST-PSCA fusion proteins The results are shown in FIG 15 and indicate that these MAbs recognize different epitopes on PSCA MAb 3E6 recognizes an epitope in the carboxy-terminal region of the protein, whereas MAb 1G8 recognizes an ammo-terminal epitope (FIG 15)

Example 6

This data provides epitope mapping of anti-PSCA monoclonal antibodies

Monoclonal antibodies 1G8, 2H5, 3C5, and 4A10 recognize an epitope residing in the amino terminal region of the PSCA protein and monoclonal antibody 3E6 recognizes an epitope in the carboxyl-terminal region of the protein GST-PSCA fusion proteins encoding either the amino terminal region of the PSCA protein (N-terminal, amino acids 2-50), the middle region (middle, amino acids 46-109), or the carboxyl terminal region (C-terminal amino acids 85-123) were used in an ELISA to identify the epitope recognized by 5 anti-PSCA monoclonal antibodies 10 ng of the indicated fusion protein coated in wells of a nucrotiter plate was incubated with either a 1 250 dilution of concentrated tissue culture supernatants of hybndomas 1G8 or 3E6 or with 1 10 dilutions of supernatants from hybndomas 2H5. 3C5. or 4A10 Binding of the monoclonal antibodies was detected by incubation with a 1 4,000 dilution of peroxidase-labeled secondary antibody and developed with 3,3' 5.5' tetramethylbenzidine base Optical densities of the wells were determined at a wavelength of 450 nm Data for 1G8 and 3E6 antibodies represent the mean + SD of tnplicate determinations and data for 2H5. 3C5. and 4A10 are the means + the range of duplicate determinations Strongest binding of the monoclonal antibodies to the vanous fusion proteins is indicated in bold The results are in Table 1 Table 1

1G8 3E6 2H5 3C5 4A10

N-terminal 1.262+0.202 0 147+0 014 0.803+0.033 2.230+0.064 1.859+0.071 Middle 0 588+0 066 0 124+0 007 0 006+0 010 0 002+0 001 0 009+0 002 C-terminal 0 088+0 025 >4.00 0 010+0 010 0 066+0 060 0 006+0 003

Monoclonal antibodies 1G8. 2H5. 3C5. and 4A10 recognize an epitope residing in the amino terminal region of the PSCA protein and monoclonal antibody 3E6 recognizes an epitope in the carboxyl-terminal region of the protein GST-PSCA fusion proteins encoding either the amino terminal region of the PSCA protein (N-terminal. ammo acids 2-50). the middle region (middle, amino acids 46-109), or the carboxyl terminal region (C-ternunal amino acids 85-123) were used in an ELISA to identify the epitope recognized by 5 anti-PSCA monoclonal antibodies 10 ng of the indicated fusion protein coated in wells of a nucrotiter plate was incubated with either a 1 250 dilution of concentrated tissue culture supernatants of hybndomas 1G8 or 3E6 or with 1 10 dilutions of supernatants from hybndomas 2H5. 3C5. or 4A10 Binding of the monoclonal antibodies was detected by incubation with a 1 4.000 dilution of peroxidase-labeled secondary antibody and developed with 3.3' 5,5' tetramethylbenzidine base Optical densities of the wells were determined at a wavelength of 450 nm Data for 1G8 and 3E6 antibodies represent the mean + SD of tnplicate determinations and data for 2H5. 3C5. and 4A10 are the means + the range of duplicate determinations Strongest binding of the monoclonal antibodies to the vanous fusion proteins is indicated in bold These results are shown in Table 2

Table 2

1G8 3E6 2H5 3C5 4A10

N-terminal 1.262+0.202 0 147+0 014 0.803+0.033 2.230+0.064 1.859+0.071 Middle 0 588+0 066 0 124+0 007 0 006+0 010 0 002+0 001 0 009+0 002

C-terminal 0 088+0 025 >4.00 0 010+0 010 0 066+0 060 0 006+0 003

The present invention is not to be limited in scope by the embodiments disclosed herein, which are intended as single illustrations of individual aspects of the invention, and any which are functionalh eqmvalent are within the scope of the invention Vanous modifications to the models and methods of the invention, in addition to those descnbed herein, will become apparent to those skilled in the art from the foregoing descnption and teachings, and are similarly intended to fall within the scope of the invention Such modifications or other embodiments can be practiced without departing from the true scope and spmt of the invention

Claims

What is claimed is

1 An isolated PSCA protein having an amino acid sequence that is encoded by a nucleic acid molecule that hybridizes, under stnngent conditions, to a nucleic acid molecule encoding the sequence shown in Figure IB or 2

2 The isolated PSCA protein of claim 1 having the amino acid sequence of Human PSCA as shown in Figure IB

3 The isolated PSCA protein of claim 1 having the amino acid sequence shown in Figure 2

4 A peptide fragment of the protein of claim 1

5 The peptide fragment of claim 4 having the ammo acid sequence TARIRAVGLLTVISK

6 The peptide fragment of claim 4 having the amino acid sequence VDDSQDYYVGKK

7 An antibody, or antibody fragment contaimng an antigen binding site, wherein the antigen binding site binds and recognizes the protein of claim 1

8 The antibody of claim 7. wherein the antigen binding site is TARIRAVGLLTVISK

9 The antibody of claim 7. wherein the antigen binding site is VDDSQDYYVGKK

10 The antibody of claim 7 which is a monoclonal antibody

11 The antibody of claim 7 which is a polyclonal antibody

12 The antibody of claim 7 which is a chimenc antibody having a munne antigen-binding site and a humanized region that regulates effector function

13 An immunoconjugate compnsing a molecule containing the antigen-binding region of the antibody or antibody fragment of claim 7 jomed to a therapeutic agent

14 The immunoconjugate of claim 13. wherem the therapeutic agent is a cytotoxic agent

15 The immunoconjugate of claim 13. wherem the cytotoxic agent is selected from a group consisting of ncin. doxorubicin. daunorubicin. taxol. ethiduim bromide, mitomyαn, etoposide. tenoposide. vincnstine. vinblastine. colchicine. dihydroxy anthracm dione. actinomvcin D. diphtena toxin. Pseudomonas exotoxin (PE) A PE40. ncin. abnn. glucocorticoid and radioisotopes

The immunoconjugate of claim 13. wherein the antibody fragments are selected from the group consisting of Fv. F(ab') and F(ab')₂ fragments

A nucleic aαd molecule encodmg the protem of claim 1 or 4

The cDNA of claim 17

A vector which compnses the nucleic aαd molecule of claim 17

A host vector system comprising a vector of claim 19 m a suitable host cell

The host vector system of claim 20. wherein the suitable host cell is a bactenal cell

The host vector system of claim 20, wherem the suitable host cell is an eukaryotic cell

A method for producmg a PSCA protem compnsmg cultunng the host vector system of claim 20 under suitable culture conditions so as to produce the PSCA protem in the host and recovering the PSCA protem so produced

A PSCA protem produced by the method of claim 23

A method for detecting the presence of a PSCA protein in a sample compnsing contacting the sample with the antibody of claim 7 and detecting the binding of the antibody with the PSCA protein in the sample

The method of claim 25. wherein the detecting compnses a contacting the sample with the antibody capable of forming a complex with the PSCA protein in the sample, and b determining whether any complex is so formed

A method for detecting the presence of a nucleic acid encoding a PSCA protein in a tissue sample compnsing contacting the sample with the nucleic acid of claim 17 and detecting the binding of the nucleic acid of claim 17 to a constituent in the sample thereby forming a complex, the complex being indicative of the nucleic acid encoding the PSCA protein in the sample

The method of claim 27. wherein the constituent is a PSCA RNA

The method of claim 25. wherein the sample is a tissue or biological fluid

The method of claim 29. wherein the sample is the tissue is bone, bone marrow, or prostate tissue

The method of claim 29. wherein the biological fluid is unne or blood sera

The method of claim 25. wherein the antibody is labeled so as to directly or indirectly produce a detectable signal with a compound selected from the group consisting of a radiolabel. an enzyme, a chromophore and a fluorescer

The method of claim 27, wherein the nucleic acid is labeled so as to directly or indirectly produce a detectable signal with a compound selected from the group consisting of a radiolabel. an enzyme, a chromophore and a fluorescer

A method for diagnosing in a subject a cancer associated with the presence of the PSCA protein which compnses quantitativelv determining in a cell sample from the subject the number of cells associated with the PSCA protein using the antibody of claim 7 and companng the number of cells so determined to the amount in a sample from a normal subject, the presence of a measurable different amount indicating the presence of the cancer

A method for diagnosing in a subject a cancer associated with the presence of the PSCA protein which compnses quantitatively determining in a sample from the subject the amount of RNA encoding the PSCA protem usmg the nucleic acid of claim 17 and companng the amount of RNA so determined to the amount in a sample from a normal subject, the presence of a measurable different amount indicating the presence of the cancer

A method for momtonng the course of prostate cancer in a subject which compnses quantitatively determining in a first sample from the subject the presence of a PSCA protein and companng the amount so determined with the amount present in a second sample from the subject, such samples being taken at different points in time, a difference in the amounts determined being indicative of the course of prostate cancer

37. A method for monitoring the course of prostate cancer in a subject which comprises quantitatively determining in a first sample from the subject the presence of a PSCA RNA and comparing the amount so determined with the amount present in a second sample from the subject, such samples being taken at different points in time, a difference in the amounts determined being indicative of the course of prostate cancer.

38. A method for diagnosing in a subject prostate cancer associated with a PSCA protein comprising: a. obtaining from the subject a sample; and b. quantitatively determimng the concentration in the sample of the PSCA protein, the presence of the protein in the sample indicating that the subject has prostate cancer.

39. A method for diagnosing in a subject prostate cancer associated with a PSCA RNA comprising: a. obtaining from the subject a sample: and b. quantitatively determimng the concentration in the sample of the PSCA RNA the presence of RNA in the sample indicating that the subject has prostate cancer.

40. The method of claim 38 or 39, wherein the sample is a tissue or biological fluid.

41. The method of claim 40, wherein the tissue is bone, bone manow. or prostate tissue.

42. The method of claim 40. wherein the biological fluid is urine or blood sera.

43. A method for selectively killing a cell expressing PSCA antigen comprising reacting the immunoconjugate of claim 13 with the cell so that the therapeutic agent of the immunoconjugate can kill the cell.