US20040191867A1

US20040191867A1 - DNA sequences coding for a mammalian glucuronyl C5-epimerase and a process for its production

Info

Publication number: US20040191867A1
Application number: US10/835,179
Authority: US
Inventors: Ulf Lindahl; Jing-ping Li
Original assignee: Biotie Therapies Corp
Current assignee: Biotie Therapies Corp
Priority date: 1997-04-18
Filing date: 2004-04-30
Publication date: 2004-09-30
Also published as: WO1998048006A1; NO995059D0; EP0986639A1; NO995059L; HUP0000758A3; CA2286858A1; US6764844B1; JP3802570B2; AU7094898A; SE9701454D0; PL336487A1; HUP0000758A2; JP2001521399A; AU718472B2

Abstract

An isolated or recombinant DNA sequence coding for a mammalian, including human, glucuronyl C5-epimarase or a functional derivative thereof capable of converting D-glucuronic acid (GlcA) to L-iduronic acid (IdoA); a recombinant expression vector comprising such DNA sequence; a host cell transformed with such recombinant expression vector; a process for the manufacture of a glucuronyl C5-epimerase or functional derivative thereof capable of converting GlcA to IdoA, comprising cultivation of a cell-line transformed with such recombinant expression vector; and a glucuronyl C5-epimerase or functional derivative thereof prepared by such process.

Description

The present invention relates to an isolated or recombinant DNA sequence coding for a glucuronyl C5-epimerase capable of converting D-glucuronic acid to L-iduronic acid. The invention also relates to a process for the manufacture of such epimerase.

BACKGROUND OF THE INVENTION

Heparin and heparan sulfate are complex, sulfated glycosaminoglycans composed of alternating glucosamine and hexuronic acid residues. The two polysaccharides are structurally related but differ in composition, such that heparin is more heavily sulfated and shows a higher ratio of L-iduronic acid (IdoA)/D-glucuronic acid (GlcA) units. (Kjellén, L. and Lindahl, U. (1991) Annual Review of Biochemistry 60, 443-475; Salmivirta, M., Lidholt, K. and Lindahl, U. (1996) The FASEB Journal 10, 1270-1279). Heparin is mainly produced by connective tissue-type mast cells, whereas heparan sulfate has a ubiquitous distribution and appears to be expressed by most cell types. The biological roles of heparin and heparan sulfate are presumably largely due to interactions of the polysaccharides with proteins, such as enzymes, enzyme inhibitors, extracellular-matrix proteins, growth factors/cytokines and others (Salmivirta, M., Lidholt, K. and Lindahl, U. (1996) The FASEB Journal 10, 1270-1279). The ineractions tend to be more or less selective/specific with regard to carbohydrate structure, and thus depend on the amounts and distribution of the various sulfate groups and hexuronic acid units. Notably, IdoA units are believed to generally promote binding of heparin and heparan sulfate chains to proteins, due to the marked conformational flexibility of these residues (Casu, B., Petitou, M., Provasoli, M. and Sinay, P. (1988) Trends in Biochemical Sciences 13, 221-225).

Heparin and heparan sulfate are synthesized as proteoglycans. The process is initiated by glycosylation reactions that generate saccharide sequences composed of alternating GlcA and N-acetylglucosamine (GlcNAc) units covalently bound to peptide core structures. The resulting (GlcAβ1,4-GlcNAca1,4-) _ndisaccharide repeats are modified, probably along with chain elongation, by a series of enzymatic reactions that is initiated by N-deacetylation and N-sulfation of GlcNAc units, continues through C-5 epimerization of GlcA to IdoA residues, and is concluded by the incorporation of O-sulfate groups at various positions. The N-deacetylation/N-sulfation step has a key role in determining the overall extent of modification of the polymer chain, since the GlcA C-5 epimerase as well as the various O-sulfotransferases all depend on the presence of N-sulfate groups for substrate recognition. While the GlcNAc N-deacetylation and N-sulfation reactions are both catalyzed by the same protein, isolation and molecular cloning of N-deacetylase/N-sulfotransferase from different tissue sources implicated two distinct forms of the enzyme. The two enzyme types differ with regard to kinetic properties, and it has been suggested that they may be differentially involved in the biosynthesis of heparin and heparan sulfate.

SUMMARY OF THE INVENTION

The present invention provides for an isolated or recombinant DNA-sequence coding for a mammalian, including human, glucuronyl C-5 epimerase or a functional derivative thereof capable of converting D-glucuronic acid (GicA) to L-iduronic acid (IdoA).

The invention also provides for a recombinant expression vector containing a transcription unit comprising a DNA sequence as described above, a transcriptional promoter, and a polyadenylation sequence.

The invention also provides for a process for the manufacture of a glucuronyl C-5 epimerase or a functional derivative thereof capable of converting D-glucuronic acid (GlcA) to L-iduronic acid (IdoA), comprising cultivation of a cell line transformed with the above recombinant expression vector in a nutrient medium allowing expression and secretion of said epimerase or functional derivative thereof.

Specific DNA sequences according to the invention are defined in appended claims 2, 3 and 4.

Furthermore, the invention provides for a host cell transformed with such recombinant expression vector.

Finally, the invention covers a glucuronyl C-5 epimerase or a functional derivative thereof whenever prepared by the process outlined above.

BRIEF DESCRIPTION OF THE APPENDED FIGURES AND SEQUENCE LISTING

Sequence listing: Nucleotide sequence and the predicted amino acid sequence of the C5-epimerase. The predicted amino acid sequence is shown below the nucleotide sequence. The numbers on the right indicate the nucleotide residue and the amino acid residue in the respective sequence. The five sequenced peptides appear in bold. The N-terminal sequence of the purified protein is shown in bold and italics. The potential N-glycosylation sites (*) are shown. The potential transmembrane region is underlined.

FIG. 1. In vitro transcription-translation. The epimerase cDNA was inserted into a pcDNA3 expression vector and linearized with XbaI at the 3′-end. It was then subjected to in vitro transcription-translation in a rabbit reticulocyte lysate system in the presence of [ ³⁵S]methionine, as described in “Experimental Procedures”. The translation product of epimerase cDNA (Epi) has a molecular weight of ˜50 kDa, by comparison with the LMW protein standard. A 118 kDa control sample of β-galactosidase (C), expressed in the same system, is shown for comparison.

FIG. 2. Effect of the expressed C5-epimerase on N-deacetylated, N-sulfated capsular polysaccharide from E. coli K5. Metabolically ³H-labeled K5 polysaccharide was N-deacetylated and N-sulfated, and was then incubated with (A) lysate of Sf9 cells infected with recombinant C5-epimerase; (B) lysate of Sf9 cells infected with recombinant β-glucuronidase. The incubation products were treated with HNO₂/NaBH₄, and the resultant hexuronyl-anhydromannitol disaccharides were recovered and separated by paper chromatography. The arrowheads indicate the migration positions of glucuronosyl-anhydromannitol (GM) and iduronosyl-anhydromannitol (IM) disaccharide standards. For further information see “Experimental Procedures”.

FIG. 3. Northern analysis of C5-epimerase mRNA expressed in bovine lung and mastocytoma cells. Total RNA from each tissue/cell line was separated by agarose gel electrophoresis. A blot was prepared, probed with a ³²P-labeled 2460-bp fragment of the epimerase cDNA clone, and finally exposed to X-ray film. (Kodak, Amersham). The arrow indicates the positions of molecular standards. For further information see “Experimental Procedures”.

DETAILED DESCRIPTION OF THE INVENTION

The present invention relates to DNA sequences coding for a mammalian glucuronyl C5-epimerase or a functional derivative thereof, such epimerase or derivative being capable of converting D-glucuronic acid (GlcA) to L-iduronic acid (IdoA). The term “mammalian” is intended to include also human varieties of the enzyme. [0014]
As used herein the definition “glucuronyl C5-epimerase or a functional derivative thereof” refers to enzymes which have the capability of converting D-glucuronic acid to L-iduronic acid. Accordingly, the definition embraces all epimerases having such capability including functional variants, such as functional fragments, mutants resulting from mutageneses or other recombinant techniques. Furthermore, the definition is intended to include glycosylated or unglycosylated mammalian glucuronyl C5-epimerases, polymorfic or allelic variants and other isoforms of the enzyme. “Functional derivatives” of the enzyme can include functional fragments, functional fusion proteins or functional mutant proteins. Such epimerases included in the present invention can have a deletion of one or more amino acids, such deletion being an N-terminal, C-terminal or internal deletion. Also truncated forms are envisioned as long as they have the conversion capability indicated herein. [0015]
Operable fragments, mutants or truncated forms can suitably be identified by screening. This is made possible by deletion of for example N-terminal, C-terminal or internal regions of the protein in a step-wise fashion, and the resulting derivative can be analyzed with regard to its capability of the desired conversion of D-glucuronic acid to L-iduronic acid. If the derivative in question operates in this capacity it is considered to constitute a functional derivative of the epimerase proper. [0016]
Examples of useful epimerases are proteins having the sequence as shown in the sequence listing or substantially as shown in the sequence listing and functional portions thereof. [0017]
Experimental Procedures [0018]
Peptide Purification and Sequencing—The 52 kDa epimerase protein (˜1 μg), purified from a detergent extract of bovine liver by chromatography on O-desulfated heparin-Sepharose, Red-Sepharose, Phenyl-Sepharose, and Concanavalin. A-Sepharose (Campbell, P., Hannesseon, H. H., Sandback, D., Rodén, L., Lindahl, U. and Li, J.-p. (1994) [0019] J Biol Chem 269, 26953-26958), was subjected to direct N-terminal sequencing using a model 470A protein sequenator (Applied Biosystems) equipped with an on-line 120 phenylthiohydantoin analyzer (Tempst, P., and Riviere, L. (1989) Anal. Biochem. 183, 290-300). Another sample (˜1 μg) was applied to preparative (12%) SDS-PAGE and was then transferred to a PVDF membrane. After staining the membrane with Coomassie Blue, the enzyme band was excised. Half of the material was submitted to direct N-terminal sequence analysis, whereas the remainder was digested with Lys-C (0.0075 U; Waco) in the presence of 1% RTX-100/10% acetonitrile/100 mM Tris-HCl, pH 8.0. The generated peptides were separated on a reverse phase C4-column, eluted at a flow rate of 100 μl/min with a 6-ml 10-70% acetonitrile gradient in 0.1% trifluoroacetic acid, and detected with a 990 Waters diode-array detector. Selected peptides were then subjected to sequence analysis as described above.
Probes for Screening—Total RNA was extracted from bovine liver according to the procedures of Sambrook et al. (1989). Single-stranded cDNA was synthesized by incubating ˜5 μg of bovine liver total RNA (denatured at 65° C., 3 min) with a reaction mixture containing 1 unit RNAse inhibitor (Perkin-Elmer Corp.), 1 mM of each dNTP, 5 μM random nucleotide hexamer and 1.25 units of murine leukemia virus reverse transcriptase (Perkin-Elmer Corp.) in a buffer of 10 mM Tris-HCl, pH 8.3. The mixture was kept at 42° C. for 45 min and then at 95° C. for 5 min. Degenerated oligonucleotide primers were designed based on the amino-acid sequence determined for one of the internal peptides derived from the purified epimerase (Table I). Single-stranded bovine liver cDNA was applied to PCR together with 100 pmols of primers 1 (sense) and 3 (antisense), in a total volume of 100 μl containing 1 μl of 10[0020] % Tween 20, 6 mM MgCl₂, 1 μM of each dNTP, and 2.5 units Taq polymerase (Pharmacia Biotech) in a buffer of 10 mM Tris-HCl, pH 9.0. The reaction products were separated on a 12% polyacrylamide gel. A ˜100-bp band was cut out from the gel and reamplified using the same PCR conditions. After an additional polyacrylamide gel electrophoresis, the product was isolated and sequenced, yielding a 108-bp sequence. This PCR product was subcloned into a pUC119 plasmid. The DNA fragment cleaved from the plasmid was labeled with [³²P]dCTP (DuPont NEN) using a Randon Primed DNA Labeling Kit (Boehringer Mannhem).
Screening of cDNA Library—A bovine lung cDNA library constructed in a lgt10 vector (Clontech) was screened with the 108-bp PCR fragment as hybridizing probe. The nitrocellulose replicas of the library plaques were prehybridized in 6×SSC, 5×Denhart's solution containing 0.1% SDS and 0.1 mg/ml denatured salmon DNA for 2 hours at 65° C. Hybridization was carried out at 42° C. in the same solution containing [0021] ³²P-labled probe for 16-18 hours. The filters were washed two times with 2×SSC, 0.5% SDS and two times with 0.5×SSC, 1% SDS at the same temperature. The library was repeatedly screened twice under the same conditions. Finally, the entire cDNA phage library was subjected to PCR amplification using lgt10 forward and reverse primers (Clontech) with a epimerase cDNA specific primer (5′-GCTGATTCTTTTCTGTC-3′).
Subcloning and Sequencing of cDNA Inserts—cDNA inserts, isolated by preparative agarose gel elctrophoresis (Sambrook et al., 1989) after EcoRI restriction cleavage of recombinant bacteriophage DNA, were subcloned into a pUC119 plasmid. The complete nucleotide sequence was determined independently on both strands using the dideoxy chain termination reaction either with [[0022] ³⁵S]dATP and the modified T7 DNA polymerase (Sequenase version 2.0 DNA Sequencing Kit; U.S. Biochemical Corp.) or the ALF™ System (Pharmacia Biotech). DNA sequences were compiled and analyzed using the DNASTAR™ program (Lasergene).
Polyclonal Antibodies and Immunodetection—A peptide corresponding to residues 77-97 of the deduced epimerase amino-acid sequence was chemically synthesized (Ake Engstrom, Department of Medical and Physiological Chemistry, Uppsala University, Sweden), and was then conjugated to ovalbumin using glutaraldehyde (Harlow, E. and Lane, D. (1989) in [0023] Antibodies: A Laboratory Manual, pp 78-79, Cold Spring Harbor Laboratory, Cold Spring Harbor, N.Y.). A rabbit was immunized with the peptide conjugates together with Freund's adjuvant. After 6 boosts (each with 240 μg conjugated peptide) blood was collected and the serum recovered. The antibody fraction was further purified on a Protein A-Sepharose column (Pharmacia Biotech), and used for immunoblotting.
Samples of GlcA C5-epimerase were separated under denaturing conditions by 12% SDS-PAGE, and were then transferred to a nitrocellulose membrane (Hybond™ ECL). ECL immunoblotting was performed according to the protocol of the manufacturer (Amersham). Briefly, the membrane was first treated with blocking agent, then incubated with purified antibody, and finally incubated with the peroxidase labeled anti-rabbit antibody. After adding the ECL reagent, the light emitted by the chemical reaction was detected by exposure to Hyperfilm™ ECL for 30-60 sec. [0024]
Northern Blot Hybridization—Bovine liver and lung total RNA was prepared according to Sambrook, J., Fritsch, E. F. and Maniatis, T. (1989) in [0025] Molecular Cloning: A Laboratory Manual, Cold Spring Harabor Laboratory, Cold Spring Harbor N.Y.), and mouse matocytoma (MCT) total RNA was extracted from a tumor cell line (Montgomery, R. I., Lidholt, K., Flay, N. W., Liang, J., Verter, B., Lindahl, U. and Esko, J. D. (1992) PNAS 89, 11327-113331) as described by Chomczynski and Sacci (1987;. Total RNA from each tissue (˜20 μg samples) was denatured in 50% formamide (v/v), 5% formaldehyde, 20 mM Mops buffer, pH 7.0, at 65° C. for 5 min. The denatured RNA was separated by electrophoresis in 1.2% agarose gel containing 5% formaldehyde (v/v), and was then transferred to a Hybond N⁺ nylon membrane (Amersham). The RNA blot was pre-hybridized in ExpressHyb Hybridization Solution (Clontech) at 65° C. for 1 h, and subsequently hybridized in the same solution with-a [³²P]dCTP-labeled DNA probe (a 2460 bp fragment including the 5′-end of the cDNA clone; see the sequence listing). The membrane was washed in 2×SSC, 0.5% SDS at the same temperature for 2×15 min and in 0.5×SSC, 0.5% SDS for 2×15 min. The membrane was exposed to a Kodak X-ray film at −70° C. for 24 h.
In Vitro Translation—The 3-kb GlcA C5-epimerase clone, inserted in a pcDNA3 expression vector (Invitrogen) was linearized at the 3′-end by restriction enzyme XbaI. In vitro translation was carried out with a Linked T7 transcription-translation system (Amersham) α-cording to the instructions of the manufacturer. The corresponding mRNA generated by incubation of 0.5 μg linearized plasmid DNA with a T7 polymerase transcription mix (total volume, 10 μl; 30° C.; 15 min) was mixed with an optimized rabbit reticulocyte lysate containing 50 μCi [[0026] ³⁵S]methionine (total volume, 50 μl), and further incubated at 30° C. for 1 h. A sample (5 μl) of the product was subjected to 12% SDS-PAGE. The gel was directly exposed to a Kodak X-ray film. After exposure, the applied protein molecular standards (LMW Molecular Calibration Kit, Pharmacia Biotech) were visualized by staining the gel with Coomassie Blue.
Expression of the GlcA C5-Epimerase—The GlcA C5-epimerase was expressed using a BacPAK8™ Baculovirus Expression System (Clontech), according to the instructions by the manufacturer. Two oligonucleotides, one at the 5′-end of the cDNA clone (1-17 bp, sense) and the other at the 3′-end of the coding sequence (1387-1404 bp, antisense), were used to PCR amplify the coding sequence of the C5-epimerase cDNA clone. The resulting fragment was cloned into the BacPAK8 vector. Sf9 insect cells, maintained in Grece's Insect Medium (GibcoBRL) supplemented with 10% fetal calf serum and penicillin/streptomycin, were then cotransfected by the C5-epimerase construct along with viral DNA. Control transfections were performed with constructs of a β-glucuronidase cDNA construct included in the expression kit, and a mouse cDNA coding for the GlcNAc N-deacetylase/N-sulfotransferase implicated in heparin biosynthesis (Eriksson, I., Sandbäck, D., Ek, B., Lindahl, U. and Kjellén, K. (1994) [0027] J. Biol. Chem. 269, 10438-10443; Cheung, W F., Eriksson, I., Kusche-Gullberg, M., Lindahl, U. and Kjellén, L. (1996) Biochemistry 35, 5250-5256). Single plaques of each co-transfected recombinant were picked and propagated. Two Petri dishes (60-mm) of Sf9 cells were infected by each recombinant virus stock and incubated at 27° C. for 5 days. The cells from one dish were used for total RNA extraction and Northern analysis performed as described above. Cells from the other dish were lysed in a buffer of 100 mM KCl, 15 mM EDTA, 1% Triton X-100, 50 mM HEPES, pH 7.4, containing 1 mM PMSF and 10 μg/ml pepstatin A. Supernatants of cell lysates as well as conditioned media were analyzed for epimerase activity. Protein contents of the cell lysates were estimated by the method of Bradford (1976) or by the BCA reagent procedure (Smith, P. K., Krohn, R. I., Hermanson, G. T., Mallia, A. K., Gartner, F. H., Provenzano, M. D., Fujimoto, E. K., Goeke, N. M., Olson, B. J. and Klenk, D. C. (1985) Anal. biochem 150, 76-85).
Demonstration of GlcA C5-Epimerase Activity—Epimerase activity was assayed using a biphasic liquid scintillation counting procedure, essentially as described by Campbell et al. (1994) above. The reaction mixtures, total volume 55 μl, contained 25 μl cell lysate or medium, 25 μl of 2×epimerase assay buffer (20 mM HEPES, 30 mM EDTA, 0.02% Triton X-100, 200 mM KCl, pH 7.4) and 5 μl of substrate (10,000 cpm [0028] ³H). The substrate was a chemically N-deacetylated and N-sulfated polysaccharide, obtained from E. coli K5 according to the procedure of Campbell et al. (1994), except that D-[5-³H]glucose was substituted for D-[1-³H]glucose.
Enzymatic conversion of D-glucuronic to L-iduronic acid was demonstrated using the metabolically 1-[0029] ³H-labeled substrate (N-deacetylated, N-sulfated capsular polysaccharide from E. coli K5) and the analytical procedure described by Campbell et al. (1994). A sample (˜20 μg; 200,000 cpm of ³H) of the modified polymer was incubated with 250 μl of cell lysate in a total volume of 300 μl epimerase assay buffer at 37° C. for 6 hours. The incubation was terminated by heating at 100° C. for 5 min. The sample was mixed with 50 μg of carrier heparin and reacted with nitrous acid at pH 1.5 (Shively, J., and Conrad, H. E. (1976) Biochemistry 15, 3932-3942), followed by reduction of the products with NaBH₄. The resultant hexuronyl-anhydromannitol disaccharides were recovered by gel chromatography on a column (1×200 cm) of Sephadex G-15 in 0.2 M NH₄HCO₃, lyophilized, and subjected to paper chromatography on Whatman No 3 MM paper in ethyl acetate/acetic acid/water (3:1:1).
Results [0030]
Generation of a Probe and Screening of cDNA Library—Amino acid sequence data for the ˜52 kDa protein were obtained by digesting highly purified epimerase with lysine-specific protease, followed by separation of the generated peptides on a reverse phase column. The five most prominent peptides were isolated and subjected to amino-acid sequencing (Table I). One of the peptides (peptide 1) was found to correspond to the N-terminal sequence of the native protein. The sequence of the largest peptide obtained ([0031] peptide 5 in Table I), was used to design two sense and one antisense degenerate oligonucleotide primers, as shown in Table I. A DNA probe was produced by PCR using primers 1 and 3 with bovine liver cDNA as template. The resultant ˜100 bp DNA fragment was purified by polyacrylamide gel electrophoresis, reamplified using the same primers, and finally isolated by electrophoresis. The identity of the product was ascertained by “nested” PCR, using primers 2 and 3, which yielded the expected ˜60 bp fragment (data not shown). Moreover, sequencing of the larger (108 bp) DNA fragment gave a deduced amino-acid sequence identical to that of the isolated peptide (Table I).
The 108-bp PCR product was labeled with [[0032] ³²P]dCTP and used for screening of a bovine lung lgt10 library. One hybridizing clone, containing a 3-kb insert, was identified. Repeated screening of the same library yielded two additional positive clones, both of which were of smaller size. Subsequent sequencing showed both of the latter clones to be contained within the 3.0-kb species (data not shown). The 3-kb clone was sequenced through both strands and was found to contain altogether 3073 bp; an additional 12-bp sequence was added at the 5′-end through characterization of a separate clone obtained by PCR amplification of the phage library (see “Experimental Procedures”).
Characterization of cDNA and Predicted Protein Structure—The total cDNA sequence identified, in all 3085 bp, contains an open reading frame corresponding to 444 amino-acid residues (the sequence listing). Notably, the coding region (1332 bp) is heavily shifted toward the 5′-end of the available cDNA, and is flanked toward the 3′-end by a larger (1681 bp) noncoding segment. The deduced amino-acid sequence corresponds to a 49,905 dalton polypeptide. All of the five peptides isolated after endo-peptidase digestion (Table I) were recognized in the primary structure deduced from the cDNA (the sequence listing). One of these peptides (peptide 1) is identical to the N-terminus of the isolated liver protein. This peptide was found to match residues 74-86 of the deduced polypeptide sequence. The enzyme isolated from bovine liver thus represents a truncated form of the native protein. Generation of mRNA from an expression vector inserted with the 3-kb cDNA clone, followed by incubation of the product with rabbit reticulocyte lysate in the presence of [[0033] ³⁵S]methionine, resulted in the formation of a distinct labeled protein with an estimated M_rof ˜50 kDa (FIG. 1). This product was recognized in immunoblotting (data not shown) by polyclonal antibodies raised against a synthetic peptide corresponding to residues 77-97 (see the sequence listing) of the deduced amino-acid sequence. The same antibodies also reacted with the isolated ˜52 kDa bovine liver protein (data not shown). These observations establish that the 3-kb cDNA is derived from the transcript that encodes the isolated ˜52 kDa bovine liver protein.
The cDNA structure indicates the occurrence of 3 potential N-glycosylation sites (the sequence listing). Sugar substituents may be important for the proper folding and catalytic activity of the enzyme, since the protein expressed in bacteria (which also gave a strong Western signal towards the polyclonal antibodies raised against the synthetic peptide; data not shown) was devoid of enzymatic activity. A potential transmembrane region is underlined in the sequence listing. The predicted protein contains two cystein residues, only one of which α-curs in the isolated (truncated) protein. Since NEM was inhibitory to epimerase activity (data not shown), this single cystein unit may be essential to the catalytic mechanism. [0034]
Functional Expression of the GlcA C5-Epimerase—A variety of expression systems were tested in attempts at generating the cloned protein in catalytically active form. A protein obtained by in vitro translation using a rabbit reticulocyte lysate system (see FIG. 1) showed no detectable epimerase activity. A construct made by inserting the 3-kb cDNA into a pcDNA3 vector (Invitrogen) failed to induce mRNA formation (or translation) in any of the cell lines tested (human embryonic kidney (293), COS-1 or CHO cells) (data not shown). We also attempted to express the enzyme in a bacterial pET system (Novagen). The transformed bacteria yielded appreciable amounts of immunoreactive protein which, however, lacked detectable enzyme activity (data not shown). [0035]
Cotransfection of epimerase recombinant with baculovirus into Sf9 insect cells resulted in the generation of abundant GlcA C5-epimerase activity (Table II). In two separate experiments, the lysates from cells infected with the same epimerase recombinant virus stock showed >10-fold higher enzyme activities, on a mg protein basis, than the corresponding fractions from cells infected with control recombinant virus stock. The conditioned media of cells infected with epimerase recombinant showed 20-30-fold higher enzyme activities than the corresponding fractions from cells infected with control plasmid virus stock. Transfections with cDNA encoding other enzymes, such as a β-glucuronidase, or the mouse mastocytoma GlcNAc N-deacetylase/N-sulfotransferase involved in heparin biosynthesis (Eriksson et al., 1994), did not significantly increase the epimerase activity beyond control levels. Notably, the higher [0036] ³H₂O release recorded for control samples as compared to heat-inactivated expressed enzyme (Table II) suggests that the insect cells constitutively produce endogenous C5-epimerase.
The polysaccharide substrate used for routine assays of epimerase activity was obtained by chemically N-deacetylating and N-sulfating the capsular polysaccharide [(GlcAβ1,4-GlcNAca1,4)[0037] _n] of E. coli K5 that had been grown in the presence of (5-³H)glucose. The data in Table II thus reflect the release of ³H₂O from 5-³H-labeled GlcA units in the modified polysaccharide, due to enzyme action (Jacobsson, I., Bäckström, G., Höök, M., Lindahl, U., Feingold, D. S., Malmström, M, and Rodén, L. (1979) J. Biol. Chem. 254, 2975-2982; Jacobsson, I., Lindahl, U., Jensen, J. W., Rodén, L., Prihar, H. and Feingold, D. S. (1984) Journal of Biological Chemistry 259, 1056-1064). More direct evidence for the actual conversion of GlcA to IdoA residues was obtained by incubating the expressed enzyme with an analogous substrate, obtained following incubation of the bacteria with [1-³H]glucose. This substrate will retain the label through the epimerization reaction, and can therefore be used to demonstrate the formation of IdoA-containing disaccharide units. Following incubation with the recombinant epimerase, 21% of the hexuronic acid residues was converted to IdoA, as demonstrated by paper chromatography of disaccharide deamination products (FIG. 2). The composition of the incubated polysaccharide thus approached the equilibrium ratio of IdoA/GlcA, previously determined to ˜3/7¹).
Northern Analysis—Total RNA, from bovine liver, lung, and mouse mastocytoma, were analysed by hybridization with a 2460-bp DNA fragment from epimerase cDNA clone as a probe. Both bovine liver and lung gave identical transcription patterns, with a dominant transcript of 9 kb and a weak ˜5 kb band (FIG. 3). By contrast, the mastocytoma RNA showed only the 5 kb transcript. [0038]

It is to be noted that the present invention is not restricted to the specific embodiments of the invention as described herein. The skilled artisan will easily recognize equivalent embodiments and such equivalents are intended to be encompassed in the scope of the appended claims.

TABLE I


Peptide and primer sequences

A. N-terminal sequences of isolated C5-epimerase

1. PNDWXVPKGCFMA (free solution)

2. PXDWTVPKGXF (band excised from PVDF-membrane)

B. Peptide sequences

1. PNDXTVPK

2. XXIAPETSEGXSLQL

3. GGWPIMVTRK

4. FLSEQHGV

5. KAMLPLYDTGSGTIYDLRHFMLGIAPNLAXWDYHTT

primer 1 primer 2 primer 3

(sense) (sense) (antisense)

C. Primer^a

Degeneracy

1 (S)	5′-cc gaattcAARGCNATGYT	384
	NCCNYT3′^b
2 (S)	5′-cc gaattcGAYYTNMGNCAY	288
	TTYATG-3′
3 (AS)	5′-cc ggatccGTNGTRTGRTA	32
	RTCCCA-3′

TABLE II


Expression of HexA C5-epimerase in Sf9 cells
Sf9 cells (1 × 10⁶in 4 ml medium) were
seeded in 60-mm Petri dishes and incubated for three
hours at 27° C. After the cells were attached, the
medium was removed, and 200 μl of recombinant virus
stock was added to infect the cells at room temperature
for 1 h. The virus suspension was aspirated and 4 ml of
medium was added to each dish. The cells were incubated
at 27° C. for 5 days. The medium was transferred into
a steril tube and centrifuged. The cells were collected,
washed twice with PBS and lysed with 300 μl of
homogenization buffer as described under “Experimental
Procedures”. Aliquots (25 μl) of cell lysate and medium
were assayed for epimerase activity. The activity is
expressed as release of ³H from K5 polysaccharide
per hour. The data is mean
value of three independent assays.

Epimerase Activity

	Cell lysate	Medium
Construct	(cpm/mg/h)	(cpm/ml/h)

HexA C5-Epimerase-1	102670 ± 5540	45200 ± 1770
HexA C5-Epimerase-2	123270 ± 4660	52610 ± 810
HexA C5-Epimerase-1	240	610
(heat-inactivted)
N-Deacetylase/	9520 ± 620	1350 ± 280
sulfotransferase
β-Glucuronidase	8460 ± 1270	1610 ± 440
BacPAK plasmid	5150 ± 880	2820 ± 690
Neo	7250 ± 370	550 ± 120

[0041]
1 13 1 17 DNA Human 1 gctgattctt ttctgtc 17 2 13 PRT Human PEPTIDE (5)..(5) Amino acid 5 is Xaa wherein Xaa = any amino acid. 2 Pro Asn Asp Trp Xaa Val Pro Lys Gly Cys Phe Met Ala 1 5 10 3 11 PRT Human PEPTIDE (2)..(10) Amino acids 2 and 10 are Xaa wherein Xaa = any amino acid. 3 Pro Xaa Asp Trp Thr Val Pro Lys Gly Xaa Phe 1 5 10 4 8 PRT Human PEPTIDE (4)..(4) Amino acid 4 is Xaa wherein Xaa = any amino acid. 4 Pro Asn Asp Xaa Thr Val Pro Lys 1 5 5 15 PRT Human PEPTIDE (1)..(11) Amino acids 1, 2 and 11 are Xaa wherein Xaa = any amino acid. 5 Xaa Xaa Ile Ala Pro Glu Thr Ser Glu Gly Xaa Ser Leu Gln Leu 1 5 10 15 6 10 PRT Human 6 Gly Gly Trp Pro Ile Met Val Thr Arg Lys 1 5 10 7 8 PRT Human 7 Phe Leu Ser Glu Gln His Gly Val 1 5 8 36 PRT Human PEPTIDE (30)..(30) Amino acid 30 is Xaa wherein Xaa = any amino acid. 8 Lys Ala Met Leu Pro Leu Tyr Asp Thr Gly Ser Gly Thr Ile Tyr Asp 1 5 10 15 Leu Arg His Phe Met Leu Gly Ile Ala Pro Asn Leu Ala Xaa Trp Asp 20 25 30 Tyr His Thr Thr 35 9 25 DNA Human misc_feature (14)..(23) Nucleotides 14, 20 and 23 are “n” wherein “n” = any nucleotide. 9 ccgaattcaa rgcnatgytn ccnyt 25 10 26 DNA Human misc_feature (14)..(17) Nucleotides 14 and 17 are “n” wherein “n” = any nucleotide. 10 ccgaattcga yytnmgncay ttyatg 26 11 25 DNA Human misc_feature (11)..(11) Nucleotide 11 is “n” wherein “n” = any nucleotide. 11 ccggatccgt ngtrtgrtar tccca 25 12 3085 DNA Human CDS (73)..(1404) 12 tccaagctga attctcatag ctattccaaa gtctatgcac agagagcccc ttatcaccct 60 gatggtgtgt tt atg tcc ttt gaa ggc tac aat gtg gaa gtc cga gac aga 111 Met Ser Phe Glu Gly Tyr Asn Val Glu Val Arg Asp Arg 1 5 10 gtc aag tgc ata agt ggg gtt gaa ggt gta cct tta tct aca cag tgg 159 Val Lys Cys Ile Ser Gly Val Glu Gly Val Pro Leu Ser Thr Gln Trp 15 20 25 gga cct caa ggc tat ttc tac cca atc cag att gca cag tat ggg tta 207 Gly Pro Gln Gly Tyr Phe Tyr Pro Ile Gln Ile Ala Gln Tyr Gly Leu 30 35 40 45 agt cac tac agc aag aat cta act gaa aaa ccc cct cat ata gag gta 255 Ser His Tyr Ser Lys Asn Leu Thr Glu Lys Pro Pro His Ile Glu Val 50 55 60 tat gaa aca gca gaa gac agg gac aaa aac agc aag ccc aat gac tgg 303 Tyr Glu Thr Ala Glu Asp Arg Asp Lys Asn Ser Lys Pro Asn Asp Trp 65 70 75 act gtg ccc aag ggc tgc ttt atg gct agt gtg gct gat aag tca aga 351 Thr Val Pro Lys Gly Cys Phe Met Ala Ser Val Ala Asp Lys Ser Arg 80 85 90 ttc acc aat gtt aaa cag ttc att gct cca gaa acc agt gaa ggt gta 399 Phe Thr Asn Val Lys Gln Phe Ile Ala Pro Glu Thr Ser Glu Gly Val 95 100 105 tcc ttg caa ctg ggg aac aca aaa gat ttt att att tca ttt gac ctc 447 Ser Leu Gln Leu Gly Asn Thr Lys Asp Phe Ile Ile Ser Phe Asp Leu 110 115 120 125 aag ttc tta aca aat gga agc gtg tct gtg gtt ctg gag acg aca gaa 495 Lys Phe Leu Thr Asn Gly Ser Val Ser Val Val Leu Glu Thr Thr Glu 130 135 140 aag aat cag ctc ttc act gta cat tat gtc tca aat acc cag cta att 543 Lys Asn Gln Leu Phe Thr Val His Tyr Val Ser Asn Thr Gln Leu Ile 145 150 155 gct ttt aaa gaa aga gac ata tac tat ggc atc ggg ccc aga aca tca 591 Ala Phe Lys Glu Arg Asp Ile Tyr Tyr Gly Ile Gly Pro Arg Thr Ser 160 165 170 tgg agc aca gtt acc cgg gac ctg gtc act gac ctc agg aaa gga gtg 639 Trp Ser Thr Val Thr Arg Asp Leu Val Thr Asp Leu Arg Lys Gly Val 175 180 185 ggt ctt tcc aac aca aaa gct gtc aag cca aca aga ata atg ccc aag 687 Gly Leu Ser Asn Thr Lys Ala Val Lys Pro Thr Arg Ile Met Pro Lys 190 195 200 205 aag gtg gtt agg ttg att gcg aaa ggg aag ggc ttc ctt gac aac att 735 Lys Val Val Arg Leu Ile Ala Lys Gly Lys Gly Phe Leu Asp Asn Ile 210 215 220 acc atc tct acc aca gcc cac atg gct gcc ttc ttc gct gcc agt gac 783 Thr Ile Ser Thr Thr Ala His Met Ala Ala Phe Phe Ala Ala Ser Asp 225 230 235 tgg ctg gtg agg aac cag gat gag aaa ggc ggc tgg ccg att atg gtg 831 Trp Leu Val Arg Asn Gln Asp Glu Lys Gly Gly Trp Pro Ile Met Val 240 245 250 acc cgt aag tta ggg gaa ggc ttc aag tct tta gag cca ggg tgg tac 879 Thr Arg Lys Leu Gly Glu Gly Phe Lys Ser Leu Glu Pro Gly Trp Tyr 255 260 265 tcc gcc atg gcc caa ggg caa gcc att tct aca tta gtc agg gcc tat 927 Ser Ala Met Ala Gln Gly Gln Ala Ile Ser Thr Leu Val Arg Ala Tyr 270 275 280 285 ctc tta aca aaa gac cat ata ttc ctc aat tca gct tta agg gca aca 975 Leu Leu Thr Lys Asp His Ile Phe Leu Asn Ser Ala Leu Arg Ala Thr 290 295 300 gcc cct tac aag ttt ctg tca gag cag cat gga gtc aag gct gtg ttt 1023 Ala Pro Tyr Lys Phe Leu Ser Glu Gln His Gly Val Lys Ala Val Phe 305 310 315 atg aat aaa cat gac tgg tat gaa gaa tat cca act aca cct agc tct 1071 Met Asn Lys His Asp Trp Tyr Glu Glu Tyr Pro Thr Thr Pro Ser Ser 320 325 330 ttt gtt tta aat ggc ttt atg tat tct tta att ggg ctg tat gac tta 1119 Phe Val Leu Asn Gly Phe Met Tyr Ser Leu Ile Gly Leu Tyr Asp Leu 335 340 345 aaa gaa act gca ggg gaa aaa ctc ggg aaa gaa gcg agg tcc ttg tat 1167 Lys Glu Thr Ala Gly Glu Lys Leu Gly Lys Glu Ala Arg Ser Leu Tyr 350 355 360 365 gag cgt ggc atg gaa tcc ctt aaa gcc atg ctc ccc ttg tac gac act 1215 Glu Arg Gly Met Glu Ser Leu Lys Ala Met Leu Pro Leu Tyr Asp Thr 370 375 380 ggc tca gga acc atc tat gac ctc cgg cac ttc atg ctt ggc att gcc 1263 Gly Ser Gly Thr Ile Tyr Asp Leu Arg His Phe Met Leu Gly Ile Ala 385 390 395 ccc aac ctg gcc cgc tgg gac tat cac acc acc cac atc aat caa ctg 1311 Pro Asn Leu Ala Arg Trp Asp Tyr His Thr Thr His Ile Asn Gln Leu 400 405 410 cag ctg ctt agc acc att gat gag tcc cca atc ttc aaa gaa ttt gtc 1359 Gln Leu Leu Ser Thr Ile Asp Glu Ser Pro Ile Phe Lys Glu Phe Val 415 420 425 aag agg tgg aag agc tac ctt aaa ggc agc cgg gca aag cac aac 1404 Lys Arg Trp Lys Ser Tyr Leu Lys Gly Ser Arg Ala Lys His Asn 430 435 440 tagagctcag aaccaaaatc ctacgtcagc ctctgctgta cacagaaact agaggctctg 1464 tgtcagcaga gcataggcac attttaaaag gctgtatact aggtttttgt ggattacatc 1524 aaagtgataa atgatcctta aaaccagtct tctgagataa ttgcattcca tgggtttagt 1584 gtttagaatg tcgatggcat ttatagcaga aaagtgttta gtcagtgggc tgaatgaaga 1644 tgtttaactt ggcctcgctt atcaccctgt tcagttccac aggtagtcca gttctctcga 1704 tttgggaaag acaatggtaa gtagctcttg atggccagct gtccagcact tgtctgaaaa 1764 cttagtatgg ggctctttta aaatgtggtt atttatgttt atgttgaaag cagactttaa 1824 aaaaataatg tgctaaaata cagtaaatat gtacttgtag cctgatagtg actgtgtgca 1884 actttaaaaa tgatttttct tttctataaa ttaatttctt aggggtggat gagcatttgt 1944 tgtgtttgtt caagttgtta tatatggaga atattttgaa tttatggttt gcttgaagtg 2004 tataaattaa aaacacaacc agtgttcagg cttcacagtt atataatgta agcacaacta 2064 aaatgaaact tgttgactgc acaagaaatt acaaaacaga acaaaaatgt tatctgtttt 2124 atgaaactat ctacaatcag taaagatttg ataatcagta tacccctcct gtacccccat 2184 tgtggtggtt tctttttgcc actatctcaa attttgtatt tcatttcaga ctacacttga 2244 gagttttgtc tattttgggg ggacattttg gggacatttg ggaaatttta ctataaacct 2304 agatttgatg aggaggtagt aagtttaata agcccactac cactgccttt tctagattct 2364 tttccccttt aaggaaaaat attaggtcag atattataag gattgtagca gatttttttc 2424 ctacttagat cattcttggt ctacagcttt ccaaactatt gatgtacaca aaatacatag 2484 tttttgtgta agctttcaaa cttttctggt gttttttctt tgcagttttt aattttaaat 2544 tatttcagct cttggataaa agtgatgcta ctatattagc tgtacatgtg taatcagacc 2604 tttattttgg ttttatatcc cacatacctc acataaatag gcatcatagc cctcacaccc 2664 tgggcagtgt ctgctctagg acttaggcag taggtcagaa ctgagggagg ttgattttgc 2724 tgtctctgtt ttagtgtatg acaatacagt aaatcaatac aataacttat acagattgga 2784 aatacgagat ccggtacttt cagaggactg agtctgacac acgcagtgca gtgtgtgtgt 2844 gacctgtatg aaatgcacat caagagcgag gtggcacctg cctgccactg catcttgcct 2904 ggacttagtc taccaacacc actcagaaat ggcaaaatgc atacatgcct ttgagcaaca 2964 tatatgttgt atcagcagcc ggaacgaaga cctacaactg acatgaaact gttagtcact 3024 aagtcgtgtc caactctttg tgacctcata gactgtagcc cgccaggctt ctttgtccat 3084 g 3085 13 444 PRT Human 13 Met Ser Phe Glu Gly Tyr Asn Val Glu Val Arg Asp Arg Val Lys Cys 1 5 10 15 Ile Ser Gly Val Glu Gly Val Pro Leu Ser Thr Gln Trp Gly Pro Gln 20 25 30 Gly Tyr Phe Tyr Pro Ile Gln Ile Ala Gln Tyr Gly Leu Ser His Tyr 35 40 45 Ser Lys Asn Leu Thr Glu Lys Pro Pro His Ile Glu Val Tyr Glu Thr 50 55 60 Ala Glu Asp Arg Asp Lys Asn Ser Lys Pro Asn Asp Trp Thr Val Pro 65 70 75 80 Lys Gly Cys Phe Met Ala Ser Val Ala Asp Lys Ser Arg Phe Thr Asn 85 90 95 Val Lys Gln Phe Ile Ala Pro Glu Thr Ser Glu Gly Val Ser Leu Gln 100 105 110 Leu Gly Asn Thr Lys Asp Phe Ile Ile Ser Phe Asp Leu Lys Phe Leu 115 120 125 Thr Asn Gly Ser Val Ser Val Val Leu Glu Thr Thr Glu Lys Asn Gln 130 135 140 Leu Phe Thr Val His Tyr Val Ser Asn Thr Gln Leu Ile Ala Phe Lys 145 150 155 160 Glu Arg Asp Ile Tyr Tyr Gly Ile Gly Pro Arg Thr Ser Trp Ser Thr 165 170 175 Val Thr Arg Asp Leu Val Thr Asp Leu Arg Lys Gly Val Gly Leu Ser 180 185 190 Asn Thr Lys Ala Val Lys Pro Thr Arg Ile Met Pro Lys Lys Val Val 195 200 205 Arg Leu Ile Ala Lys Gly Lys Gly Phe Leu Asp Asn Ile Thr Ile Ser 210 215 220 Thr Thr Ala His Met Ala Ala Phe Phe Ala Ala Ser Asp Trp Leu Val 225 230 235 240 Arg Asn Gln Asp Glu Lys Gly Gly Trp Pro Ile Met Val Thr Arg Lys 245 250 255 Leu Gly Glu Gly Phe Lys Ser Leu Glu Pro Gly Trp Tyr Ser Ala Met 260 265 270 Ala Gln Gly Gln Ala Ile Ser Thr Leu Val Arg Ala Tyr Leu Leu Thr 275 280 285 Lys Asp His Ile Phe Leu Asn Ser Ala Leu Arg Ala Thr Ala Pro Tyr 290 295 300 Lys Phe Leu Ser Glu Gln His Gly Val Lys Ala Val Phe Met Asn Lys 305 310 315 320 His Asp Trp Tyr Glu Glu Tyr Pro Thr Thr Pro Ser Ser Phe Val Leu 325 330 335 Asn Gly Phe Met Tyr Ser Leu Ile Gly Leu Tyr Asp Leu Lys Glu Thr 340 345 350 Ala Gly Glu Lys Leu Gly Lys Glu Ala Arg Ser Leu Tyr Glu Arg Gly 355 360 365 Met Glu Ser Leu Lys Ala Met Leu Pro Leu Tyr Asp Thr Gly Ser Gly 370 375 380 Thr Ile Tyr Asp Leu Arg His Phe Met Leu Gly Ile Ala Pro Asn Leu 385 390 395 400 Ala Arg Trp Asp Tyr His Thr Thr His Ile Asn Gln Leu Gln Leu Leu 405 410 415 Ser Thr Ile Asp Glu Ser Pro Ile Phe Lys Glu Phe Val Lys Arg Trp 420 425 430 Lys Ser Tyr Leu Lys Gly Ser Arg Ala Lys His Asn 435 440

Claims

1. An isolated or recombinant DNA sequence coding for a mammalian, including human, glucuronyl C5-epimerase or a functional derivative thereof capable of converting D-glucuronic acid (GlcA) to L-iduronic acid (IdoA).

2. A DNA sequence according to claim 1 constituted by a nucleotide sequence comprising nucleotide residues 1 to 1404, inclusive, as depicted in the sequence listing.

3. A DNA sequence according to claim 2 constituted by a nucleotide residue comprising nucleotide residues 73 to 1404, inclusive, as depicted in the sequence listing.

4. A DNA sequence according to claim 2 constituted by a nucleotide residue comprising nucleotide residues 1 to 1404, inclusive, as depicted in the sequence listing.

5. A recombinant expression vector containing a transcription unit comprising a DNA sequence according to any one of the preceding claims, a transcriptional promoter, and a polyadenylation sequence.

6. A host cell transformed with the recombinant expression vector of claim 5.

7. A process for the manufacture of a glucuronyl C5-epimerase or a functional derivative thereof capable of converting D-glucuronic acid (GlcA) to L-iduronic acid (IdoA), comprising cultivation of a cell line transformed with a recombinant expression vector according to claim 5 in a nutrient medium allowing expression and secretion of said epimerase or functional derivative thereof.

8. A glucuronyl C5-epimerase or a functional derivative thereof whenever prepared by the process of claim 7.