[go: up one dir, main page]

US11479532B2 - 5-aminolevulinate synthase inhibitors and methods of use thereof - Google Patents

5-aminolevulinate synthase inhibitors and methods of use thereof Download PDF

Info

Publication number
US11479532B2
US11479532B2 US16/625,363 US201816625363A US11479532B2 US 11479532 B2 US11479532 B2 US 11479532B2 US 201816625363 A US201816625363 A US 201816625363A US 11479532 B2 US11479532 B2 US 11479532B2
Authority
US
United States
Prior art keywords
alkyl
alkenyl
independently
aryl
substituted
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Active, expires
Application number
US16/625,363
Other versions
US20210269397A1 (en
Inventor
Roman Manetsch
Gloria C. Ferreira
Bosko M. STOJANOVSKI
Katya Pavlova Nacheva
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
University of South Florida St Petersburg
Original Assignee
University of South Florida St Petersburg
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by University of South Florida St Petersburg filed Critical University of South Florida St Petersburg
Priority to US16/625,363 priority Critical patent/US11479532B2/en
Assigned to UNIVERSITY OF SOUTH FLORIDA reassignment UNIVERSITY OF SOUTH FLORIDA ASSIGNMENT OF ASSIGNORS INTEREST (SEE DOCUMENT FOR DETAILS). Assignors: MANETSCH, ROMAN, FERREIRA, GLORIA C., NACHEVA, Katya Pavlova, STOJANOVSKI, Bosko M.
Publication of US20210269397A1 publication Critical patent/US20210269397A1/en
Application granted granted Critical
Publication of US11479532B2 publication Critical patent/US11479532B2/en
Active legal-status Critical Current
Adjusted expiration legal-status Critical

Links

Classifications

    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07CACYCLIC OR CARBOCYCLIC COMPOUNDS
    • C07C311/00Amides of sulfonic acids, i.e. compounds having singly-bound oxygen atoms of sulfo groups replaced by nitrogen atoms, not being part of nitro or nitroso groups
    • C07C311/50Compounds containing any of the groups, X being a hetero atom, Y being any atom
    • C07C311/51Y being a hydrogen or a carbon atom
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K31/00Medicinal preparations containing organic active ingredients
    • A61K31/16Amides, e.g. hydroxamic acids
    • A61K31/18Sulfonamides
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K31/00Medicinal preparations containing organic active ingredients
    • A61K31/33Heterocyclic compounds
    • A61K31/395Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins
    • A61K31/40Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins having five-membered rings with one nitrogen as the only ring hetero atom, e.g. sulpiride, succinimide, tolmetin, buflomedil
    • A61K31/4015Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins having five-membered rings with one nitrogen as the only ring hetero atom, e.g. sulpiride, succinimide, tolmetin, buflomedil having oxo groups directly attached to the heterocyclic ring, e.g. piracetam, ethosuximide
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K31/00Medicinal preparations containing organic active ingredients
    • A61K31/33Heterocyclic compounds
    • A61K31/395Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins
    • A61K31/40Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins having five-membered rings with one nitrogen as the only ring hetero atom, e.g. sulpiride, succinimide, tolmetin, buflomedil
    • A61K31/403Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins having five-membered rings with one nitrogen as the only ring hetero atom, e.g. sulpiride, succinimide, tolmetin, buflomedil condensed with carbocyclic rings, e.g. carbazole
    • A61K31/404Indoles, e.g. pindolol
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K31/00Medicinal preparations containing organic active ingredients
    • A61K31/33Heterocyclic compounds
    • A61K31/395Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins
    • A61K31/435Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins having six-membered rings with one nitrogen as the only ring hetero atom
    • A61K31/44Non condensed pyridines; Hydrogenated derivatives thereof
    • A61K31/445Non condensed piperidines, e.g. piperocaine
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07DHETEROCYCLIC COMPOUNDS
    • C07D207/00Heterocyclic compounds containing five-membered rings not condensed with other rings, with one nitrogen atom as the only ring hetero atom
    • C07D207/02Heterocyclic compounds containing five-membered rings not condensed with other rings, with one nitrogen atom as the only ring hetero atom with only hydrogen or carbon atoms directly attached to the ring nitrogen atom
    • C07D207/44Heterocyclic compounds containing five-membered rings not condensed with other rings, with one nitrogen atom as the only ring hetero atom with only hydrogen or carbon atoms directly attached to the ring nitrogen atom having three double bonds between ring members or between ring members and non-ring members
    • C07D207/444Heterocyclic compounds containing five-membered rings not condensed with other rings, with one nitrogen atom as the only ring hetero atom with only hydrogen or carbon atoms directly attached to the ring nitrogen atom having three double bonds between ring members or between ring members and non-ring members having two doubly-bound oxygen atoms directly attached in positions 2 and 5
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07DHETEROCYCLIC COMPOUNDS
    • C07D209/00Heterocyclic compounds containing five-membered rings, condensed with other rings, with one nitrogen atom as the only ring hetero atom
    • C07D209/02Heterocyclic compounds containing five-membered rings, condensed with other rings, with one nitrogen atom as the only ring hetero atom condensed with one carbocyclic ring
    • C07D209/04Indoles; Hydrogenated indoles
    • C07D209/10Indoles; Hydrogenated indoles with substituted hydrocarbon radicals attached to carbon atoms of the hetero ring
    • C07D209/12Radicals substituted by oxygen atoms
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07DHETEROCYCLIC COMPOUNDS
    • C07D211/00Heterocyclic compounds containing hydrogenated pyridine rings, not condensed with other rings
    • C07D211/04Heterocyclic compounds containing hydrogenated pyridine rings, not condensed with other rings with only hydrogen or carbon atoms directly attached to the ring nitrogen atom
    • C07D211/06Heterocyclic compounds containing hydrogenated pyridine rings, not condensed with other rings with only hydrogen or carbon atoms directly attached to the ring nitrogen atom having no double bonds between ring members or between ring members and non-ring members
    • C07D211/08Heterocyclic compounds containing hydrogenated pyridine rings, not condensed with other rings with only hydrogen or carbon atoms directly attached to the ring nitrogen atom having no double bonds between ring members or between ring members and non-ring members with hydrocarbon or substituted hydrocarbon radicals directly attached to ring carbon atoms
    • C07D211/10Heterocyclic compounds containing hydrogenated pyridine rings, not condensed with other rings with only hydrogen or carbon atoms directly attached to the ring nitrogen atom having no double bonds between ring members or between ring members and non-ring members with hydrocarbon or substituted hydrocarbon radicals directly attached to ring carbon atoms with radicals containing only carbon and hydrogen atoms attached to ring carbon atoms
    • C07D211/14Heterocyclic compounds containing hydrogenated pyridine rings, not condensed with other rings with only hydrogen or carbon atoms directly attached to the ring nitrogen atom having no double bonds between ring members or between ring members and non-ring members with hydrocarbon or substituted hydrocarbon radicals directly attached to ring carbon atoms with radicals containing only carbon and hydrogen atoms attached to ring carbon atoms with hydrocarbon or substituted hydrocarbon radicals attached to the ring nitrogen atom

Definitions

  • 5-Aminolevulinate synthase is the first enzyme and a regulatory enzyme of the heme biosynthetic pathway in metazoan [1].
  • ALAS is, therefore, a logical target for reducing porphyrin accumulation characteristic of porphyria [2], which can be found in certain hepatic and erythropoietic/blood disorders.
  • the compound or a salt thereof can include compounds of Formulas (I-V):
  • the method can include administering a composition that includes one or more compounds of Formulas (I-V).
  • a kinetic target-guided synthesis (TGS) approach against 5-aminolevulinate synthase (ALAS) was developed, which allows high-throughput screening and identification of novel ALAS-specific inhibitors.
  • a sulfo-click reaction was used in the kinetic TGS screening to identify ALAS inhibitors, thus allowing multi-fragment screening with a rapid throughput.
  • Target-guided synthesis is a fragment-based approach that combines the syntheses with screening of libraries of low molecular weight compounds in a single step [4,5].
  • the target protein e.g., ALAS
  • ALAS the target protein
  • An expanded library of fragments was used that covers a larger chemical space allowing exploration of multi-fragment screening. Fragments comprising sulfonyl azide or thio acid groups (sulfonyl azides SZ1-SZ38 and thio acids TA1-T45) are identified and synthesized for ALAS.
  • ALA inhibitors include the compounds of Formulas (I-V):
  • R 1 , R 2 , R 3 , R 4 , R 5 , R 6 is independently selected from the group consisting of H; F; Cl; Br; I; OH; C 1-14 linear, branched, or cyclic alkyl, including, but not limited, to methyl, ethyl, n-propyl, isopropyl, n-butyl, sec-butyl, isobutyl, tert-butyl, cyclopropyl, cyclobutyl, cyclopentyl, or cyclohexyl; C 2-14 linear, branched, or cyclic alkenyl, including, but not limited to ethenyl, propenyl, butenyl, butadienyl, cyclopentenyl, methylcycpentenyl, dimethylcyclohexyl, where one or more double bond is located at any position in the alkenyl carbon chain in an E or Z conformation and where a plurality of
  • n is an integer from 1 to 4.
  • W is —CH 2 —, O, S and NR 8 , where R 8 is selected from H; (C 1-14 )alkyl, such as methyl, ethyl, n-propyl, isopropyl, n-butyl, sec-butyl, isobutyl, tert-butyl; (C 2-14 )alkenyl, such as ethenyl, propenyl, butenyl, where the double bond can be located at any position in the alkenyl carbon chain, including any alkenyl conformational isomers; heteroalkyl; and heteroaryl.
  • R 8 is selected from H
  • (C 1-14 )alkyl such as methyl, ethyl, n-propyl, isopropyl, n-butyl, sec-butyl, isobutyl, tert-butyl
  • (C 2-14 )alkenyl such as ethenyl, propenyl,
  • alkyl can also refer to the radical of saturated aliphatic groups (i.e., an alkane with one hydrogen atom removed), including straight-chain alkyl groups, branched-chain alkyl groups, cycloalkyl (alicyclic) groups, alkyl-substituted cycloalkyl groups, and cycloalkyl-substituted alkyl groups.
  • alkyl also refers to a saturated hydrocarbon chain having the specified number of atoms.
  • alkyl can include both “unsubstituted alkyls” and “substituted alkyls,” the latter of which refers to alkyl moieties having one or more substituents replacing hydrogen on one or more carbons of the hydrocarbon backbone.
  • substituents include, but are not limited to, halogen, hydroxyl, carbonyl (such as a carboxyl, alkoxycarbonyl, formyl, or an acyl), thiocarbonyl (such as a thioester, a thioacetate, or a thioformate), alkoxyl, phosphoryl, phosphate, phosphonate, phosphinate, amino, amido, amidine, imine, cyano, nitro, azido, sulfhydryl, alkylthio, sulfate, sulfonate, sulfamoyl, sulfonamido, sulfonyl, heterocyclyl, aralkyl, or an aromatic or heteroaromatic moiety.
  • carbonyl such as a carboxyl, alkoxycarbonyl, formyl, or an acyl
  • thiocarbonyl such as a thioester, a thi
  • Moieties substituted on the hydrocarbon chain can themselves be substituted, if appropriate.
  • the substituents of a substituted alkyl may include halogen, hydroxy, nitro, thiols, amino, azido, imino, amido, phosphoryl (including phosphonate and phosphinate), sulfonyl (including sulfate, sulfonamido, sulfamoyl and sulfonate), and silyl groups, as well as ethers, alkylthios, carbonyls (including ketones, aldehydes, carboxylates, and esters), —CF 3 , —CN and the like. Cycloalkyls or cyclic alkyls can be substituted in the same manner.
  • heterocycl can refer to a non-aromatic ring and having the specified number of member atoms being saturated or having one or more degrees of unsaturation and, unless otherwise specified, containing one or more heteroatoms.
  • Suitable heteroatoms include, but are not limited to, O, N, Si, P, Se, B, and S, where the phosphorous and sulfur atoms are optionally oxidized, and the nitrogen heteroatom is optionally quaternized.
  • heteroaryl can refer to an aromatic ring having the specified number of member atoms and, unless otherwise specified, containing one or more heteroatoms. Suitable heteroatoms include, but are not limited to, O, N, Si, P, Se, B, and S, where the phosphorous and sulfur atoms are optionally oxidized, and the nitrogen heteroatom is optionally quaternized. Bicyclic and other polycyclic ring systems having a heteroaryl ring are described as fused systems.
  • heteroalkyl can refer to straight or branched chain, or cyclic carbon-containing radicals, or combinations thereof, containing at least one heteroatom.
  • Suitable heteroatoms include, but are not limited to, O, N, Si, P, Se, B, and S, where the phosphorous and sulfur atoms are optionally oxidized, and the nitrogen heteroatom is optionally quaternized.
  • heteroalkyl can refer to straight or branched chain, or cyclic carbon-containing radicals, or combinations thereof, containing at least one heteroatom.
  • Suitable heteroatoms include, but are not limited to, O, N, Si, P, Se, B, and S, where the phosphorous and sulfur atoms are optionally oxidized, and the nitrogen heteroatom is optionally quaternized.
  • alkoxyl or “alkoxy” can refer to an alkyl group having an oxygen radical attached thereto. Representative alkoxyl groups include methoxy, ethoxy, propyloxy, tert-butoxy and the like.
  • An “ether” is two hydrocarbons covalently linked by an oxygen. Accordingly, the substituent of an alkyl that renders that alkyl is an ether or resembles an alkoxyl, such as can be represented by one of —O-alkyl, —O-alkenyl, and —O-alkynyl.
  • the terms “aroxy” and “aryloxy” can include —O-aryl and O-heteroaryl.
  • amine or “amino” (and its protonated form) can include both unsubstituted and substituted amines, and “ammonium” e.g., a moiety that can be represented by the general formula:
  • R, R′, and R′′ each independently represent a hydrogen, an alkyl, an alkenyl, an aryl, —(CH 2 ) m —R C , or where R and R′ are taken together with the N atom to which they are attached complete a heterocycle having from 4 to 8 atoms in the ring structure;
  • R C represents an aryl, a cycloalkyl, a cycloalkenyl, a heterocycle or a polycycle; and m is zero to 8.
  • amide is —C( ⁇ O)NRR′ or —N(R)C( ⁇ O)R′ where: R and R′ can include a hydrogen, alkyl, cycloalkyl, alkenyl, cycloalkenyl, alkynyl, or aryl; or R and R′ are combined as an alkylene, alkenylene, or arylene to form a ring including the nitrogen.
  • imide is —N(C( ⁇ O)R)(C( ⁇ R′) where: R and R′ can include a hydrogen, alkyl, cycloalkyl, alkenyl, cycloalkenyl, alkynyl, or aryl; or R and R′ are combined as an alkylene, alkenylene, or arylene to form a ring including the nitrogen.
  • amino can include an amino-substituted carbonyl represented by the general formula:
  • R and R′ can include a hydrogen, alkyl, cycloalkyl, alkenyl, cycloalkenyl, or alkynyl; or R and R′ are combined as an alkylene, alkenylene, or arylene to form a ring including the nitrogen.
  • aryl can include a C 6 -C 14 -membered aromatic, fused aromatic, fused heterocyclic, or biaromatic, or bihetereocyclic ring systems. Examples include: phenyl and napthyl groups.
  • the aromatic ring can be substituted at one or more ring positions with one or more substituents including, but not limited to, halogen, azide, alkyl, aralkyl, alkenyl, alkynyl, cycloalkyl, hydroxyl, alkoxyl, amino (or quaternized amino), nitro, sulfhydryl, imino, amido, phosphonate, phosphinate, carbonyl, carboxyl, silyl, ether, alkylthio, sulfonyl, sulfonamido, ketone, aldehyde, ester, heterocyclyl, aromatic or heteroaromatic moieties, —CF 3 , —CN, and combinations thereof.
  • substituents including, but not limited to, halogen, azide, alkyl, aralkyl, alkenyl, alkynyl, cycloalkyl, hydroxyl, alkoxyl, amino (or quaternized
  • heteroaryl can include a C 3 -C 14 aromatic ring including one or more heteroatoms, includes 5-, 6-, 7-, 8-, 9-, and 10-membered single-ring aromatic groups that may include one to four heteroatoms, for example, benzimidazolyl, benzofuranyl, benzothiofuranyl, benzothiophenyl, benzoxazolyl, benzoxazolinyl, benzthiazolyl, benztriazolyl, benztetrazolyl, benzisoxazolyl, benzisothiazolyl, benzimidazolinyl, carbazolyl, 4aH carbazolyl, carbolinyl, chromanyl, chromenyl, cinnolinyl, decahydroquinolinyl, 2H,6H-1,5,2-dithiazinyl, dihydrofuro[2,
  • Heterocyclic groups can optionally be substituted with one or more substituents at one or more positions, such as a halogen, alkyl, aralkyl, alkenyl, alkynyl, cycloalkyl, hydroxyl, amino, nitro, sulfhydryl, imino, amido, phosphate, phosphonate, phosphinate, carbonyl, carboxyl, silyl, ether, alkylthio, sulfonyl, ketone, aldehyde, ester, a heterocyclyl, an aromatic or heteroaromatic moiety, —CF 3 , and —CN.
  • substituents such as a halogen, alkyl, aralkyl, alkenyl, alkynyl, cycloalkyl, hydroxyl, amino, nitro, sulfhydryl, imino, amido, phosphate, phosphonate, phosphinate, carbonyl,
  • aralkyl can include an alkyl group substituted with an aryl group (e.g., an aromatic or heteroaromatic group).
  • aralkyloxy can include —O-aralkyl.
  • “carbocycle,” can include an aromatic or non-aromatic ring(s) in which each atom of the ring(s) is carbon.
  • carbonyl can be represented by C ⁇ O comprising groups of the general formula:
  • X is a bond or represents an oxygen or a sulfur
  • R and R′ can include a hydrogen, alkyl, cycloalkyl, alkenyl, cycloalkenyl, alkynyl, or aryl.
  • the formula represents an “ester.”
  • X is oxygen
  • the moiety is referred to herein as a carboxyl group, and particularly when R is a hydrogen, the formula represents a “carboxylic acid.”
  • R′ is hydrogen
  • the formula represents a “formate.” In general, where the oxygen atom of the above formula is replaced by sulfur, the formula represents a “thiocarbonyl” group.
  • heteroatom can include any element other than carbon or hydrogen.
  • exemplary heteroatoms include, but are not limited to, boron, nitrogen, oxygen, phosphorus, sulfur, silicon, arsenic, and selenium.
  • substituted can refer to all permissible substituents of the compounds described herein.
  • the permissible substituents include acyclic and cyclic, branched and unbranched, carbocyclic and heterocyclic, aromatic and nonaromatic substituents of organic compounds.
  • Illustrative substituents include, but are not limited to, halogens, hydroxyl groups, or any other organic groupings containing any number of carbon atoms, e.g., 1-14 carbon atoms, and optionally can include one or more heteroatoms such as oxygen, sulfur, or nitrogen grouping in linear, branched, or cyclic structural formats.
  • substituents include alkyl, substituted alkyl, alkenyl, substituted alkenyl, alkynyl, substituted alkynyl, phenyl, substituted phenyl, aryl, substituted aryl, heteroaryl, substituted heteroaryl, halo, hydroxyl, alkoxy, substituted alkoxy, phenoxy, substituted phenoxy, aroxy, substituted aroxy, alkylthio, substituted alkylthio, phenylthio, substituted phenylthio, arylthio, substituted arylthio, cyano, isocyano, substituted isocyano, carbonyl, substituted carbonyl, carboxyl, substituted carboxyl, amino, substituted amino, amido, substituted amido, sulfonyl, substituted sulfonyl, sulfonic acid, phosphoryl, substituted phosphoryl, phosphonyl, substituted phosphonyl, polyaryl
  • Heteroatoms such as nitrogen
  • Specific compounds of Formulas (I-V) can include, but are not limited to:
  • the method of treating porphyria can include, but is not limited to, administering one or more compounds of Formulas (I-V) or a composition of one or more compounds of Formulas (I-V).
  • the administration can include, but is not limited to: administration though oral pathways, which administration includes administration in capsule, tablet, granule, spray, syrup, or other such forms; administration through non-oral pathways, which administration includes administration as an aqueous suspension, an oily preparation or the like or as a drip, suppository, salve, ointment or the like; administration via injection, subcutaneously, intraperitoneally, intravenously, intramuscularly, intradermally, or the like; as well as administration topically; and administration via controlled released formulations, depot formulations, and infusion pump delivery.
  • modes of administration and as further disclosure of modes of administration, disclosed herein are various methods for administration of the disclosed compounds and pharmaceutical compositions including modes of administration through intraocular, intranasal, and intra-auri
  • the method is characterized by the use of the compounds of Formulas (I-V) alone or in any combination, or in combination with other therapeutic or diagnostic agents.
  • These products can be utilized in vivo, ordinarily in a mammal, preferably in a human, or in vitro.
  • the products or compositions can be administered to the mammal in a variety of ways, including parenterally, intravenously, subcutaneously, intramuscularly, colonically, rectally, vaginally, nasally or intraperitoneally, employing a variety of dosage forms. Such methods can also be applied to testing chemical activity in vivo.
  • the compounds of Formulas (I-V) can be in the form of pharmaceutically acceptable salts.
  • pharmaceutically acceptable salt refers to salts that retain the biological effectiveness and properties of a compound and, which are not biologically or otherwise undesirable for use in a pharmaceutical.
  • the compounds disclosed herein are capable of forming acid and/or base salts by virtue of the presence of amino and/or carboxyl groups or groups similar thereto.
  • Pharmaceutically acceptable acid addition salts can be formed with inorganic acids and organic acids. Inorganic acids from which salts can be derived include, for example, hydrochloric acid, hydrobromic acid, sulfuric acid, nitric acid, phosphoric acid, and the like.
  • Organic acids from which salts can be derived include, for example, acetic acid, propionic acid, glycolic acid, pyruvic acid, oxalic acid, maleic acid, malonic acid, succinic acid, fumaric acid, tartaric acid, citric acid, benzoic acid, cinnamic acid, mandelic acid, methanesulfonic acid, ethanesulfonic acid, p-toluenesulfonic acid, salicylic acid, and the like.
  • Pharmaceutically acceptable base addition salts can be formed with inorganic and organic bases.
  • Inorganic bases from which salts can be derived include, for example, sodium, potassium, lithium, ammonium, calcium, magnesium, iron, zinc, copper, manganese, aluminum, and the like; particularly preferred are the ammonium, potassium, sodium, calcium and magnesium salts.
  • Organic bases from which salts can be derived include, for example, primary, secondary, and tertiary amines, substituted amines including naturally occurring substituted amines, cyclic amines, basic ion exchange resins, and the like, specifically such as isopropylamine, trimethylamine, diethylamine, triethylamine, tripropylamine, and ethanolamine.
  • composition containing compounds of Formulas (I-V) can include, but is not limited to, a pharmaceutically acceptable carrier.
  • pharmaceutically acceptable carrier includes any and all solvents, dispersion media, coatings, antibacterial and antifungal agents, isotonic and absorption delaying agents and the like. The use of such media and agents for pharmaceutically active substances is well known in the art. Except insofar as any conventional media or agent is incompatible with the active ingredient, its use in the therapeutic compositions of the invention is contemplated. Supplementary active ingredients can also be incorporated into the compositions.
  • a “therapeutically effective amount” means that amount of the compound in the composition which, when administered to a human suffering from a porphyria , is sufficient to effect treatment for the porphyria.
  • the amount of compounds which are administered and the dosage regimen for treating a porphyria with the compounds of Formulas (I-V) and/or compositions depends on a variety of factors, including the age, weight, sex and medical condition of the subject, the type of disease, the severity of the disease, the route and frequency of administration, and the particular compound employed. Thus, the dosage regimen may vary widely, but can be determined routinely using standard methods.
  • a daily dose can include about 0.01 to 500 mg/kg, about 0.01 and about 50 mg/kg, or about 0.01 and about 30 mg/kg of body weight may be appropriate.
  • the daily dose can be administered in one to four doses per day.
  • the starting material 4-(bromomethyl)benzenesulfonyl azide
  • the starting material was prepared according to the article, Hu, X. D., Sun, J., Wang, H.-G., Manetsch, R. Bcl-X L -templated Assembly of Its Own Protein-Protein Interaction Modulator from Fragments Decorated with Thio Acids and Sulfonyl Azides. J. Am. Chem. Soc. 130, 13820-13821 (2008), which is hereby incorporated by reference in its entirety.
  • SZ12 was synthesized by the reaction:
  • the starting material 3,4-bis(2,4-difluorophenyl)-1H-pyrrole-2,5-dione was prepared according to the article, Nacheva, K. et al. Fluorescent properties and resonance energy transfer of 3,4-bis(2,4-difluorophenyl)-maleimide. Org. Biomol. Chem. 10, 7840-7846 (2012), which is hereby incorporated by reference in its entirety.
  • N-acyl sulfonamides was prepared according to the article, Chem Comm 2012, 48, 1526-1528, which is hereby incorporated by reference in its entirey. All the reactions were performed at 20-30 mg scale.
  • the 9-flourenylmethyl thioester was taken in a 1.5 mL eppendorf and 3.5% DBU/dry DMF solution was added (per 1 ⁇ mol of thioester, 4.7 ⁇ L of 3.5% DBU/dry DMF solution was added) and the reaction was stirred for a minute. Then the sulfonylazide (1 eq to thioester) was added to the reaction mixture and immediately bubbling was observed.

Landscapes

  • Chemical & Material Sciences (AREA)
  • Organic Chemistry (AREA)
  • Health & Medical Sciences (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Pharmacology & Pharmacy (AREA)
  • Epidemiology (AREA)
  • Medicinal Chemistry (AREA)
  • Animal Behavior & Ethology (AREA)
  • General Health & Medical Sciences (AREA)
  • Public Health (AREA)
  • Veterinary Medicine (AREA)
  • Organic Low-Molecular-Weight Compounds And Preparation Thereof (AREA)
  • Pharmaceuticals Containing Other Organic And Inorganic Compounds (AREA)

Abstract

Disclosed herein, are 5-Aminolevulinate synthase inhibitors and methods for their use in the treatment of porphyria. In at least one specific embodiment, the 5-Aminolevulinate synthase inhibitors can include compounds or salts thereof of Formulas (I-V)

Description

CROSS-REFERENCE TO RELATED APPLICATION
This application is the U.S. national stage application of International Patent Application No. PCT/US2018/038790, filed Jun. 21, 2018; which claims the benefit of U.S. Provisional Patent Application Ser. No. 62/524,341, filed Jun. 23, 2017, the disclosure of each of which is hereby incorporated by reference in its entirety, including any figures, tables, or drawings.
BACKGROUND OF THE INVENTION
5-Aminolevulinate synthase (ALAS) is the first enzyme and a regulatory enzyme of the heme biosynthetic pathway in metazoan [1]. ALAS is, therefore, a logical target for reducing porphyrin accumulation characteristic of porphyria [2], which can be found in certain hepatic and erythropoietic/blood disorders. Up to now, aminomalonate remains the only known inhibitor of ALAS (IC50=7 μM) [3]. New compounds are needed to combat porphyria due to the limited number of 5-Aminolevulinate synthase inhibitors.
BRIEF SUMMARY OF THE INVENTION
Provided herein are new compounds and methods of using the same in the treatment porphyria. In at least one specific embodiment, the compound or a salt thereof, can include compounds of Formulas (I-V):
Figure US11479532-20221025-C00002
In another specific embodiment, the method can include administering a composition that includes one or more compounds of Formulas (I-V).
DETAILED DISCLOSURE OF THE INVENTION
A kinetic target-guided synthesis (TGS) approach against 5-aminolevulinate synthase (ALAS) was developed, which allows high-throughput screening and identification of novel ALAS-specific inhibitors. A sulfo-click reaction was used in the kinetic TGS screening to identify ALAS inhibitors, thus allowing multi-fragment screening with a rapid throughput.
Target-guided synthesis is a fragment-based approach that combines the syntheses with screening of libraries of low molecular weight compounds in a single step [4,5]. In TGS, the target protein (e.g., ALAS) is actively involved in the assembly of its own bidentate ligand from a pool of smaller reactive fragments [6]. An expanded library of fragments was used that covers a larger chemical space allowing exploration of multi-fragment screening. Fragments comprising sulfonyl azide or thio acid groups (sulfonyl azides SZ1-SZ38 and thio acids TA1-T45) are identified and synthesized for ALAS.
ALA inhibitors according to embodiments of the invention include the compounds of Formulas (I-V):
Figure US11479532-20221025-C00003
where R1, R2, R3, R4, R5, R6 is independently selected from the group consisting of H; F; Cl; Br; I; OH; C1-14 linear, branched, or cyclic alkyl, including, but not limited, to methyl, ethyl, n-propyl, isopropyl, n-butyl, sec-butyl, isobutyl, tert-butyl, cyclopropyl, cyclobutyl, cyclopentyl, or cyclohexyl; C2-14 linear, branched, or cyclic alkenyl, including, but not limited to ethenyl, propenyl, butenyl, butadienyl, cyclopentenyl, methylcycpentenyl, dimethylcyclohexyl, where one or more double bond is located at any position in the alkenyl carbon chain in an E or Z conformation and where a plurality of double bonds are isolated or conjugated; C2-14 linear, branched, or cyclic alkynyl, where the one or more triple bond is located at any position in the alkynyl carbon chain; —OR, where R is C1-14 alkyl or C2-14 alkenyl; C6-14 aryl; C7-28 aralkyl; C7-28 alkaryl; heteroaryl, halogenated alkyl; heterocyclyl; amino; alkylamino; arylamino; dialkylamino, where the alkyls are independently C1-14 alkyl; alkylarylamino; diarylamino; tetraalkylammonium, where the alkyls are independently C1-14 alkyl; aryltrialkylammonium, where the alkyls are independently C1-14 alkyl; diaryldialkylammonium, where the alkyls are independently C1-14 alkyl and the aryls are independently C6-14 aryl; acylamino; hydroxyl; alkoxy; aryloxy; arylalkoxy; acyloxy; nitro; carbamoyl; trifluoromethyl; phenoxy; benzyloxy; alkaryl; arylalkyl; carbamate; hydroxyalkyl; aminoalkyl; alkoxyalkyl; hydroxyalkyl; aminoalkyl; alkoxyalkyl; alkyltriphenylphosphonium; —C(O)R, where R is C1-14 alkyl or C2-14 alkenyl; —C(O)H; —C(O)OH; —OC(O)R where R is C1-14 alkyl or C2-14 alkenyl; —ROC(O)R′ where R and R′ are independently C1-14 alkyl or C2-14 alkenyl; —RC(O)OR′, where R is C1-14 alkylene, C2-14 alkenylene, or arylene and R′ is C1-14 alkyl, C2-14 alkenyl, or aryl; —C(O)OR where R is C1-14 alkyl, C2-14 alkenyl, or aryl; —OCOOR, where R is C1-14 alkyl, C2-14 alkenyl, or aryl; —C(O)NRR′ where R and R′ are independently H, C1-14 alkyl, C2-14 alkenyl, or aryl; —N(R)C(O)R′, where R is C1-14 alkyl, C2-14 alkenyl, or aryl; —N(C(O)R)(C(O)R′), where R and R′ are independently C1-14 alkyl, C2-14 alkenyl, or aryl or R and R′ are combined as C1-14 alkylene, C2-14 alkenylene, or arylene; —OCN; —NCO; —ONO2; —CN; —NC; —NO; —CH═NOH; —B(OH)2; —B(OR)(R′), where R where R and R′ are independently H, C1-14 alkyl, or C2-14 alkenyl; —B(OR)(OR′), are independently H, C1-14 alkyl, or C2-14 alkenyl; —PR2, where R is independently selected from H, C1-14 alkyl, or C2-14 alkenyl; —OP(O)(OR)2, where R is independently selected from H, C1-14 alkyl, or C2-14 alkenyl; —P(O)(R)(OH), where R is selected from C1-14 alkyl or C2-14 alkenyl; —SH; thioalkyl; —SR, where R is selected from C1-14 alkyl or C2-14 alkenyl; —SSR, where R is C1-14 alkyl or C2-14 alkenyl; sulfonamide; —S(O)R, where R is C1-14 alkyl or C2-14 alkenyl; —SO2H; —SO3H; thiocyanate; isothiocyanate; —C(S)R where R is C1-14 alkyl or C2-14 alkenyl; where X is O, N, or S; where V is —CH2—, CO, S, and NR7, where R7 is independently H; C1-14 alkyl; C2-14 alkenyl; heteroalkyl; or heteroaryl;
where n is an integer from 1 to 4; and
where W is —CH2—, O, S and NR8, where R8 is selected from H; (C1-14)alkyl, such as methyl, ethyl, n-propyl, isopropyl, n-butyl, sec-butyl, isobutyl, tert-butyl; (C2-14)alkenyl, such as ethenyl, propenyl, butenyl, where the double bond can be located at any position in the alkenyl carbon chain, including any alkenyl conformational isomers; heteroalkyl; and heteroaryl.
As used herein, the term “alkyl” can also refer to the radical of saturated aliphatic groups (i.e., an alkane with one hydrogen atom removed), including straight-chain alkyl groups, branched-chain alkyl groups, cycloalkyl (alicyclic) groups, alkyl-substituted cycloalkyl groups, and cycloalkyl-substituted alkyl groups. “Alkyl” also refers to a saturated hydrocarbon chain having the specified number of atoms. The term “alkyl” can include both “unsubstituted alkyls” and “substituted alkyls,” the latter of which refers to alkyl moieties having one or more substituents replacing hydrogen on one or more carbons of the hydrocarbon backbone. Such substituents include, but are not limited to, halogen, hydroxyl, carbonyl (such as a carboxyl, alkoxycarbonyl, formyl, or an acyl), thiocarbonyl (such as a thioester, a thioacetate, or a thioformate), alkoxyl, phosphoryl, phosphate, phosphonate, phosphinate, amino, amido, amidine, imine, cyano, nitro, azido, sulfhydryl, alkylthio, sulfate, sulfonate, sulfamoyl, sulfonamido, sulfonyl, heterocyclyl, aralkyl, or an aromatic or heteroaromatic moiety.
Moieties substituted on the hydrocarbon chain can themselves be substituted, if appropriate. For instance, the substituents of a substituted alkyl may include halogen, hydroxy, nitro, thiols, amino, azido, imino, amido, phosphoryl (including phosphonate and phosphinate), sulfonyl (including sulfate, sulfonamido, sulfamoyl and sulfonate), and silyl groups, as well as ethers, alkylthios, carbonyls (including ketones, aldehydes, carboxylates, and esters), —CF3, —CN and the like. Cycloalkyls or cyclic alkyls can be substituted in the same manner.
As used herein, “heterocycl” can refer to a non-aromatic ring and having the specified number of member atoms being saturated or having one or more degrees of unsaturation and, unless otherwise specified, containing one or more heteroatoms. Suitable heteroatoms include, but are not limited to, O, N, Si, P, Se, B, and S, where the phosphorous and sulfur atoms are optionally oxidized, and the nitrogen heteroatom is optionally quaternized.
As used herein, “heteroaryl” can refer to an aromatic ring having the specified number of member atoms and, unless otherwise specified, containing one or more heteroatoms. Suitable heteroatoms include, but are not limited to, O, N, Si, P, Se, B, and S, where the phosphorous and sulfur atoms are optionally oxidized, and the nitrogen heteroatom is optionally quaternized. Bicyclic and other polycyclic ring systems having a heteroaryl ring are described as fused systems.
The term “heteroalkyl,” as used herein, can refer to straight or branched chain, or cyclic carbon-containing radicals, or combinations thereof, containing at least one heteroatom. Suitable heteroatoms include, but are not limited to, O, N, Si, P, Se, B, and S, where the phosphorous and sulfur atoms are optionally oxidized, and the nitrogen heteroatom is optionally quaternized.
The term “heteroalkyl,” as used herein, can refer to straight or branched chain, or cyclic carbon-containing radicals, or combinations thereof, containing at least one heteroatom. Suitable heteroatoms include, but are not limited to, O, N, Si, P, Se, B, and S, where the phosphorous and sulfur atoms are optionally oxidized, and the nitrogen heteroatom is optionally quaternized.
As used herein, “alkoxyl” or “alkoxy” can refer to an alkyl group having an oxygen radical attached thereto. Representative alkoxyl groups include methoxy, ethoxy, propyloxy, tert-butoxy and the like. An “ether” is two hydrocarbons covalently linked by an oxygen. Accordingly, the substituent of an alkyl that renders that alkyl is an ether or resembles an alkoxyl, such as can be represented by one of —O-alkyl, —O-alkenyl, and —O-alkynyl. The terms “aroxy” and “aryloxy” can include —O-aryl and O-heteroaryl.
As used herein, “amine” or “amino” (and its protonated form) can include both unsubstituted and substituted amines, and “ammonium” e.g., a moiety that can be represented by the general formula:
Figure US11479532-20221025-C00004

respectively,
where R, R′, and R″ each independently represent a hydrogen, an alkyl, an alkenyl, an aryl, —(CH2)m—RC, or where R and R′ are taken together with the N atom to which they are attached complete a heterocycle having from 4 to 8 atoms in the ring structure; RC represents an aryl, a cycloalkyl, a cycloalkenyl, a heterocycle or a polycycle; and m is zero to 8.
As used herein, “amide” is —C(═O)NRR′ or —N(R)C(═O)R′ where: R and R′ can include a hydrogen, alkyl, cycloalkyl, alkenyl, cycloalkenyl, alkynyl, or aryl; or R and R′ are combined as an alkylene, alkenylene, or arylene to form a ring including the nitrogen. As used herein, “imide” is —N(C(═O)R)(C(═R′) where: R and R′ can include a hydrogen, alkyl, cycloalkyl, alkenyl, cycloalkenyl, alkynyl, or aryl; or R and R′ are combined as an alkylene, alkenylene, or arylene to form a ring including the nitrogen.
As used herein, “amido” can include an amino-substituted carbonyl represented by the general formula:
Figure US11479532-20221025-C00005
where R and R′ can include a hydrogen, alkyl, cycloalkyl, alkenyl, cycloalkenyl, or alkynyl; or R and R′ are combined as an alkylene, alkenylene, or arylene to form a ring including the nitrogen.
As used herein, “aryl” can include a C6-C14-membered aromatic, fused aromatic, fused heterocyclic, or biaromatic, or bihetereocyclic ring systems. Examples include: phenyl and napthyl groups. The aromatic ring can be substituted at one or more ring positions with one or more substituents including, but not limited to, halogen, azide, alkyl, aralkyl, alkenyl, alkynyl, cycloalkyl, hydroxyl, alkoxyl, amino (or quaternized amino), nitro, sulfhydryl, imino, amido, phosphonate, phosphinate, carbonyl, carboxyl, silyl, ether, alkylthio, sulfonyl, sulfonamido, ketone, aldehyde, ester, heterocyclyl, aromatic or heteroaromatic moieties, —CF3, —CN, and combinations thereof.
As used herein, “heteroaryl”, “aryl heterocycles” or “heteroaromatics” can include a C3-C14 aromatic ring including one or more heteroatoms, includes 5-, 6-, 7-, 8-, 9-, and 10-membered single-ring aromatic groups that may include one to four heteroatoms, for example, benzimidazolyl, benzofuranyl, benzothiofuranyl, benzothiophenyl, benzoxazolyl, benzoxazolinyl, benzthiazolyl, benztriazolyl, benztetrazolyl, benzisoxazolyl, benzisothiazolyl, benzimidazolinyl, carbazolyl, 4aH carbazolyl, carbolinyl, chromanyl, chromenyl, cinnolinyl, decahydroquinolinyl, 2H,6H-1,5,2-dithiazinyl, dihydrofuro[2,3]tetrahydrofuran, furanyl, furazanyl, imidazolidinyl, imidazolinyl, imidazolyl, 1H-indazolyl, indolenyl, indolinyl, indolizinyl, indolyl, 3H-indolyl, isatinoyl, isobenzofuranyl, isochromanyl, isoindazolyl, isoindolinyl, isoindolyl, isoquinolinyl, isothiazolyl, isoxazolyl, methylenedioxyphenyl, morpholinyl, naphthyridinyl, octahydroisoquinolinyl, oxadiazolyl, 1,2,3-oxadiazolyl, 1,2,4-oxadiazolyl, 1,2,5-oxadiazolyl, 1,3,4-oxadiazolyl, oxazolidinyl, oxazolyl, oxindolyl, pyrimidinyl, phenanthridinyl, phenanthrolinyl, phenazinyl, phenothiazinyl, phenoxathinyl, phenoxazinyl, phthalazinyl, piperazinyl, piperidinyl, piperidonyl, 4-piperidonyl, piperonyl, pteridinyl, purinyl, pyranyl, pyrazinyl, pyrazolidinyl, pyrazolinyl, pyrazolyl, pyridazinyl, pyridooxazole, pyridoimidazole, pyridothiazole, pyridinyl, pyridyl, pyrimidinyl, pyrrolidinyl, pyrrolinyl, 2H-pyrrolyl, pyrrolyl, quinazolinyl, quinolinyl, 4H-quinolizinyl, quinoxalinyl, quinuclidinyl, tetrahydrofuranyl, tetrahydroisoquinolinyl, tetrahydroquinolinyl, tetrazolyl, 6H-1,2,5-thiadiazinyl, 1,2,3-thiadiazolyl, 1,2,4-thiadiazolyl, 1,2,5-thiadiazolyl, 1,3,4-thiadiazolyl, thianthrenyl, thiazolyl, thienyl, thienothiazolyl, thienooxazolyl, thienoimidazolyl, thiophenyl, and xanthenyl. Heterocyclic groups can optionally be substituted with one or more substituents at one or more positions, such as a halogen, alkyl, aralkyl, alkenyl, alkynyl, cycloalkyl, hydroxyl, amino, nitro, sulfhydryl, imino, amido, phosphate, phosphonate, phosphinate, carbonyl, carboxyl, silyl, ether, alkylthio, sulfonyl, ketone, aldehyde, ester, a heterocyclyl, an aromatic or heteroaromatic moiety, —CF3, and —CN.
As used herein, “aralkyl,” can include an alkyl group substituted with an aryl group (e.g., an aromatic or heteroaromatic group).
As used herein, “aralkyloxy” can include —O-aralkyl.
As used herein, “carbocycle,” can include an aromatic or non-aromatic ring(s) in which each atom of the ring(s) is carbon.
The term “carbonyl” can be represented by C═O comprising groups of the general formula:
Figure US11479532-20221025-C00006
where X is a bond or represents an oxygen or a sulfur, and R and R′ can include a hydrogen, alkyl, cycloalkyl, alkenyl, cycloalkenyl, alkynyl, or aryl. Where X is an oxygen and R or R′ is not hydrogen, the formula represents an “ester.” Where X is oxygen, the moiety is referred to herein as a carboxyl group, and particularly when R is a hydrogen, the formula represents a “carboxylic acid.” Where X is an oxygen and R′ is hydrogen, the formula represents a “formate.” In general, where the oxygen atom of the above formula is replaced by sulfur, the formula represents a “thiocarbonyl” group. Where X is a sulfur and R or R′ is not hydrogen, the formula represents a “thioester.” Where X is sulfur and R is hydrogen, the formula represents a “thiocarboxylic acid.” Where X is a sulfur and R′ is hydrogen, the formula represents a “thioformate.” On the other hand, where X is a bond, and R is not hydrogen, the above formula represents a “ketone” group. Where X is a bond, and R is hydrogen, the above formula represents an “aldehyde” group.
As used herein, “heteroatom” can include any element other than carbon or hydrogen. Exemplary heteroatoms include, but are not limited to, boron, nitrogen, oxygen, phosphorus, sulfur, silicon, arsenic, and selenium.
The term “substituted” as used herein, can refer to all permissible substituents of the compounds described herein. In the broadest sense, the permissible substituents include acyclic and cyclic, branched and unbranched, carbocyclic and heterocyclic, aromatic and nonaromatic substituents of organic compounds. Illustrative substituents include, but are not limited to, halogens, hydroxyl groups, or any other organic groupings containing any number of carbon atoms, e.g., 1-14 carbon atoms, and optionally can include one or more heteroatoms such as oxygen, sulfur, or nitrogen grouping in linear, branched, or cyclic structural formats. Representative substituents include alkyl, substituted alkyl, alkenyl, substituted alkenyl, alkynyl, substituted alkynyl, phenyl, substituted phenyl, aryl, substituted aryl, heteroaryl, substituted heteroaryl, halo, hydroxyl, alkoxy, substituted alkoxy, phenoxy, substituted phenoxy, aroxy, substituted aroxy, alkylthio, substituted alkylthio, phenylthio, substituted phenylthio, arylthio, substituted arylthio, cyano, isocyano, substituted isocyano, carbonyl, substituted carbonyl, carboxyl, substituted carboxyl, amino, substituted amino, amido, substituted amido, sulfonyl, substituted sulfonyl, sulfonic acid, phosphoryl, substituted phosphoryl, phosphonyl, substituted phosphonyl, polyaryl, substituted polyaryl, C3-C20 cyclic, substituted C3-C20 cyclic, heterocyclic, substituted heterocyclic, amino acid, peptide, and polypeptide groups.
Heteroatoms, such as nitrogen, can have hydrogen substituents and/or any permissible substituents of organic compounds described herein which satisfy the valences of the heteroatoms. It is understood that “substitution” or “substituted” includes the implicit proviso that such substitution is in accordance with permitted valence of the substituted atom and the substituent, and that the substitution results in a stable compound, i.e., a compound that does not spontaneously undergo transformation such as by rearrangement, cyclization, elimination, etc.
Specific compounds of Formulas (I-V) can include, but are not limited to:
Figure US11479532-20221025-C00007
The method of treating porphyria, according to embodiments of the invention, can include, but is not limited to, administering one or more compounds of Formulas (I-V) or a composition of one or more compounds of Formulas (I-V). The administration can include, but is not limited to: administration though oral pathways, which administration includes administration in capsule, tablet, granule, spray, syrup, or other such forms; administration through non-oral pathways, which administration includes administration as an aqueous suspension, an oily preparation or the like or as a drip, suppository, salve, ointment or the like; administration via injection, subcutaneously, intraperitoneally, intravenously, intramuscularly, intradermally, or the like; as well as administration topically; and administration via controlled released formulations, depot formulations, and infusion pump delivery. As further examples of such modes of administration and as further disclosure of modes of administration, disclosed herein are various methods for administration of the disclosed compounds and pharmaceutical compositions including modes of administration through intraocular, intranasal, and intra-auricular pathways.
In embodiments of the invention, the method is characterized by the use of the compounds of Formulas (I-V) alone or in any combination, or in combination with other therapeutic or diagnostic agents. These products can be utilized in vivo, ordinarily in a mammal, preferably in a human, or in vitro. In employing them in vivo, the products or compositions can be administered to the mammal in a variety of ways, including parenterally, intravenously, subcutaneously, intramuscularly, colonically, rectally, vaginally, nasally or intraperitoneally, employing a variety of dosage forms. Such methods can also be applied to testing chemical activity in vivo.
In embodiments of the invention, the compounds of Formulas (I-V) can be in the form of pharmaceutically acceptable salts. The term “pharmaceutically acceptable salt” refers to salts that retain the biological effectiveness and properties of a compound and, which are not biologically or otherwise undesirable for use in a pharmaceutical. In many cases, the compounds disclosed herein are capable of forming acid and/or base salts by virtue of the presence of amino and/or carboxyl groups or groups similar thereto. Pharmaceutically acceptable acid addition salts can be formed with inorganic acids and organic acids. Inorganic acids from which salts can be derived include, for example, hydrochloric acid, hydrobromic acid, sulfuric acid, nitric acid, phosphoric acid, and the like. Organic acids from which salts can be derived include, for example, acetic acid, propionic acid, glycolic acid, pyruvic acid, oxalic acid, maleic acid, malonic acid, succinic acid, fumaric acid, tartaric acid, citric acid, benzoic acid, cinnamic acid, mandelic acid, methanesulfonic acid, ethanesulfonic acid, p-toluenesulfonic acid, salicylic acid, and the like. Pharmaceutically acceptable base addition salts can be formed with inorganic and organic bases. Inorganic bases from which salts can be derived include, for example, sodium, potassium, lithium, ammonium, calcium, magnesium, iron, zinc, copper, manganese, aluminum, and the like; particularly preferred are the ammonium, potassium, sodium, calcium and magnesium salts. Organic bases from which salts can be derived include, for example, primary, secondary, and tertiary amines, substituted amines including naturally occurring substituted amines, cyclic amines, basic ion exchange resins, and the like, specifically such as isopropylamine, trimethylamine, diethylamine, triethylamine, tripropylamine, and ethanolamine.
The composition containing compounds of Formulas (I-V) can include, but is not limited to, a pharmaceutically acceptable carrier. The term “pharmaceutically acceptable carrier” includes any and all solvents, dispersion media, coatings, antibacterial and antifungal agents, isotonic and absorption delaying agents and the like. The use of such media and agents for pharmaceutically active substances is well known in the art. Except insofar as any conventional media or agent is incompatible with the active ingredient, its use in the therapeutic compositions of the invention is contemplated. Supplementary active ingredients can also be incorporated into the compositions.
Determining a therapeutically effective amount of the composition is well within the capability of those skilled in the art. A “therapeutically effective amount” means that amount of the compound in the composition which, when administered to a human suffering from a porphyria, is sufficient to effect treatment for the porphyria.
The amount of compounds which are administered and the dosage regimen for treating a porphyria with the compounds of Formulas (I-V) and/or compositions depends on a variety of factors, including the age, weight, sex and medical condition of the subject, the type of disease, the severity of the disease, the route and frequency of administration, and the particular compound employed. Thus, the dosage regimen may vary widely, but can be determined routinely using standard methods. A daily dose can include about 0.01 to 500 mg/kg, about 0.01 and about 50 mg/kg, or about 0.01 and about 30 mg/kg of body weight may be appropriate. The daily dose can be administered in one to four doses per day.
MATERIALS AND METHODS
The examples and embodiments described herein are for illustrative purposes only and various modifications or changes in light thereof will be suggested to persons skilled in the art and are included within the spirit and purview of this application. In addition, any elements or limitations of any invention or embodiment thereof disclosed herein can be combined with any and/or all other elements or limitations (individually or in any combination) or any other invention or embodiment thereof disclosed herein, and all such combinations are contemplated with the scope of the invention without limitation thereto.
Synthesis of Selected Thio Ester and Sulfonyl Azide Intermediates Synthesis of SZ10
Figure US11479532-20221025-C00008
4-(((2-(Phenylthio)ethyl)(4-sulfamoylbenzyl)amino)methyl)benzenesulfonyl azide (SZ10) was prepared according to the article, ACS Chem. Biol. (2011), 6, 724-732, which is hereby incorporated by reference in its entirety.
Synthesis of SZ11
Figure US11479532-20221025-C00009
4′-(Tert-butyl)-[1,1′-biphenyl]-4-sulfonyl azide (SZ11) was prepared according to the article, Chem. Comm. (2012), 48, 1526-1528, which is hereby incorporated by reference in its entirety.
Synthesis of SZ12
SZ12 was synthesized by the reaction scheme:
Figure US11479532-20221025-C00010
The starting material, 4-(bromomethyl)benzenesulfonyl azide, was prepared according to the article, Hu, X. D., Sun, J., Wang, H.-G., Manetsch, R. Bcl-XL-templated Assembly of Its Own Protein-Protein Interaction Modulator from Fragments Decorated with Thio Acids and Sulfonyl Azides. J. Am. Chem. Soc. 130, 13820-13821 (2008), which is hereby incorporated by reference in its entirety. SZ12 was synthesized by the reaction:
Figure US11479532-20221025-C00011
To a round bottom flask was charged with 3-nitroaniline (138 mg, 1.00 mmol), 4-(bromomethyl)benzenesulfonyl azide (275 mg, 1.00 mmol), K2CO3 (276 mg, 2.00 mmol), MeOH/H20 (9:1, 12.5 mL), a magnetic stir bar and stirred at rt for 12 h. The reaction was judged to be complete via TLC, quenched with water, extracted with EtOAc, dried over Na2SO4 and concentrated under reduced pressure. The crude residue was purified using flash column chromatography and 4-(((3-nitrophenyl)amino)methyl)benzenesulfonyl azide SZ12 was obtained in 67% yield. Rf=0.35 in hexanes:EtOAc=3:1. 1H NMR (600 MHz, CDCl3) δ 7.94 (d, J=8.3 Hz, 2H), 7.61 (d, J=8.2 Hz, 2H), 7.57 (dd, J=8.1, 1.8 Hz, 1H), 7.40 (t, J=2.1 Hz, 1H), 7.30 (t, J=8.2 Hz, 1H), 6.86 (dd, J=8.2, 2.2 Hz, 1H), 4.64 (s, 1H), 4.56 (s, 2H). 13C NMR (101 MHz, CDCl3) δ: 148.2, 146.4, 130.2, 128.4, 128.3, 128.2, 127.8, 118.9, 113.0, 106.9, 47.5. HRMS (ESI) calcd for C13H11N5O4S [M+K]+: 372.0163, found: 372.0145.
Synthesis of SZ35
SZ35 was synthesized by the reaction:
Figure US11479532-20221025-C00012
To a flame dried sealed tube was charged with 4-bromobenzenesulfonamide (250 mg, 1.06 mmol), (4-phenoxyphenyl)boronic acid (250 mg, 1.17 mmol), PdCl2(dppf) (70.0 mg, 8.0 mol %), 2 N Na2CO3 (0.75 mL, 3.18 mmol), DMF (8.5 mL), a magnetic stir bar and purged with argon. The reaction was heated at 100° C. for 18 h. The reaction mixture was cooled, diluted with CH2Cl2 and filtered through Celite. The solution was dried over Na2SO4 and the solvent evaporated under reduced pressure. The aryl ether sulfonamide intermediate was purified using flash column chromatography resulting in a yellowish solid (310 mg, 90%). Rf=0.56 in hexanes:EtOAc=1:1. 1H NMR (400 MHz, DMSO-d6) δ 7.98-7.81 (m, 4H), 7.81-7.68 (m, 2H), 7.51-7.36 (m, 4H), 7.19 (t, J=7.4 Hz, 1H), 7.10 (t, J=8.9 Hz, 4H). 13C NMR (101 MHz, DMSO-d6) δ 157.19, 156.14, 142.59, 133.61, 130.10, 128.66, 126.75, 126.25, 123.83, 119.02, 118.74, 95.79.
An Erlenmeyer flask was charged with aryl ether sulfonamide intermediate (310 mg, 0.95 mmol), NaHCO3 (320 mg, 3.81 mmol), water (1.1 mL), 1 M CuSO4 (0.04 mL of a 1 M solution, 4 mol %), a magnetic stir bar and stirred at rt. To the flask a freshly prepared solution of TfN3 (1.9 mL of a 0.75 M solution, 1.50 mmol) in toluene followed by t-BuOH (7.6 mL) was added and stirred behind a blast shield for 18 h. The reaction mass was transferred to a round bottom flask and diluted with xylenes. Volatile solvents were removed under reduced pressure, the product precipitated and the solids recovered using vacuum filtration. The crude residue was purified using flash column chromatography and 4′-phenoxy-[1,1′-biphenyl]-4-sulfonyl azide SZ35 was obtained as a yellow solid (234 mg, 70%).%). Rf=0.86 in hexanes:EtOAc=1:1. 1H NMR (400 MHz, CDCl3) δ 8.02 (d, J=8.2 Hz, 2H), 7.82-7.76 (m, 2H), 7.63-7.58 (m, 2H), 7.44-7.37 (m, 2H), 7.22-7.16 (m, 1H), 7.15-7.08 (m, 4H). 13C NMR (101 MHz, CDCl3) δ 158.6, 156.3, 147.1, 136.5, 133.2, 129.9, 128.8, 128.1, 127.8, 124.0, 119.5, 118.9. HRMS (ESI) calcd for C18H13N3O3S [M+H]+: 352.0751, found: 352.0757.
Synthesis of TE2
Figure US11479532-20221025-C00013
S-((9H-Fluoren-9-yl)methyl) 4-(4,4-dimethylpiperidin-1-yl)benzothioate (TE2) was prepared according to the article, ChemComm 2012, 48, 1526-1528, which is hereby incorporated by reference in its entirety.
Synthesis of TE24
TE24 was synthesized by the reaction scheme:
Figure US11479532-20221025-C00014
To a flame dried flask was charged with 4-bromobenzoic acid (1.00 g, 4.97 mmol), THF (5 mL), a magnetic stir bar, purged with argon and cooled to −15° C. A 1.0 M solution of dibutylmagnesium in heptane (2.58 mL, 2.59 mmol) was added dropwise followed by the addition of a 2.5 M solution of n-butyllithium (2.20 mL, 5.32 mmol) over the course of 20 min and stirred for 1 h. A solution of 2,3,4-trimethoxybenzaldehyde (1.95 g, 4.97 mmol) in THF (2 mL) was added and stirred for 1 h. The resulting reaction mixture was quenched with 1 M HCl, allowed to come to rt and stirred overnight. The resulting solution containing benzyl alcohol intermediate was extracted with EtOAc, dried with Na2SO4, concentrated under reduced pressure and purified using flash column chromatography. Catalytic hydrogenation of benzylic alcohol intermediate was performed by dissolving the residue in AcOH, adding the solution to a Parr hydrogenator pressure bottle along with Pd/C. The pressure bottle was purged with hydrogen gas three times, charged with a hydrogen atmosphere to 40 psi and shaken for 4 h. The reaction was judged to be complete via TLC analysis. The reaction mass was then filtered through Celite, washed with MeOH, concentrated under reduced pressure and crude carboxylic acid was purified using flash column chromatography. 1H NMR (400 MHz, CDCl3) δ 8.02 (d, J=6.3 Hz, 2H), 7.30 (d, J=6.6 Hz, 2H), 6.81 (d, J=7.4 Hz, 1H), 6.62 (d, J=7.4 Hz, 1H), 3.99 (br. s., 2H), 3.89-3.80 (m, 6H), 3.73 (br. s., 3H).
The carboxylic acid was transformed into TE24 as previously reported in ACS Chem Biol 2011, 6, 724-732. The three synthetic steps gave TE24 with a 25% overall yield. 1H NMR (400 MHz, CDCl3) δ 7.90-7.86 (m, 2H), 7.76 (t, J=6.4 Hz, 4H), 7.44-7.38 (m, 2H), 7.37-7.31 (m, 2H), 7.29-7.25 (m, 2H), 6.80 (d, J=8.6 Hz, 1H), 6.62 (d, J=8.6 Hz, 1H), 4.26 (t, J=6.1 Hz, 1H), 3.96 (s, 2H), 3.89 (s, 3H), 3.86 (s, 3H), 3.75 (s, 3H), 3.67 (d, J=6.3 Hz, 2H). 13C NMR (101 MHz, CDCl3) δ 191.1, 152.6, 151.8, 147.8, 145.6, 142.4, 141.0, 134.8, 128.8, 127.6, 127.3, 127.0, 126.0, 124.7, 124.4, 119.8, 107.1, 60.7, 60.6, 55.9, 46.8, 35.9, 32.5. HRMS (ESI) calcd for C31H28O4S [M+H]+: 497.1781, found: 497.1732.
Synthesis of TE40
TE40 was synthesized by the reaction scheme:
Figure US11479532-20221025-C00015
Methyl 1-methyl-1H-indole-5-carboxylate was prepared according to the article, Org. Lett. 2014, 16, 1124-1127, which is hereby incorporated by reference in its entirety. Rf=0.49 in hexanes:EtOAc=2:1. 1H NMR (400 MHz, CDCl3) δ ppm 8.4 (s, 1H) 7.9 (d, J=8.6 Hz, 1H) 7.3 (d, J=9.4 Hz, 1H) 7.1 (d, J=3.1 Hz, 1H) 6.6 (d, J=3.9 Hz, 1H) 3.9 (s, 3H) 3.8 (s, 3H). 13C NMR (101 MHz, CDCl3) δ ppm 168.2, 139.0, 130.2, 127.9, 123.9, 122.8, 121.3, 108.8, 102.6, 51.7, 32.9.
At a temperature of 0° C., a round bottom flask was charged with cyclohexanecarbonyl chloride (465 mg, 3.17 mmol), DCM (15 mL), AlCl3 (423 mg, 3.17 mmol) and magnetic stir bar. The reaction mixture was allowed to stir and come to rt. Indole 9 (200 mg, 1.06 mmol) was added as a DCM (6 mL) solution over the course of 25 min. The reaction mixture was then stirred for 18 h. The reaction was quenched with saturated NH4Cl, extracted with DCM, dried with Na2SO4, solvent removed under reduced pressure and purified using flash column chromatography. The ester intermediate was hydrolyzed in 2 M NaOH in refluxing MeOH for 4 h. The reaction mixture was cooled, acidified with 1 M HCl and allowed to solidify upon standing. The carboxylic acid product was collected by vacuum filtration and used without further purification. 1H NMR (400 MHz, DMSO-d6) δ 12.60 (br. s., 1H), 8.90 (s, 1H), 8.48 (s, 1H), 7.87 (dd, J=1.4, 8.8 Hz, 1H), 7.58 (d, J=9.0 Hz, 1H), 3.88 (s, 3H), 3.11 (t, J=10.3 Hz, 1H), 1.78 (t, J=11.5 Hz, 4H), 1.68 (d, J=12.1 Hz, 1H), 1.52-1.30 (m, 4H), 1.26-1.14 (m, 1H). 13C NMR (101 MHz, DMSO-d6) δ 198.4, 168.1, 139.7, 138.7, 125.7, 124.4, 124.1, 123.9, 114.7, 110.4, 46.4, 33.3, 29.6, 25.6, 25.4.
The carboxylic acid intermediate was transformed into TE40 as previously reported in ACS Chem Biol 2011, 6, 724-732. The three synthetic steps gave TE40 with a 62% overall yield. 1H NMR (500 MHz, CDCl3) δ 9.09 (d, J=1.5 Hz, 1H), 7.92 (dd, J=1.7, 8.6 Hz, 1H), 7.80 (d, J=7.3 Hz, 2H), 7.78-7.75 (m, 3H), 7.42-7.38 (m, 2H), 7.37-7.31 (m, 3H), 4.27 (t, J=6.4 Hz, 1H), 3.85 (s, 3H), 3.68 (d, J=6.4 Hz, 2H), 3.00 (tt, J=3.0, 11.7 Hz, 1H), 1.96-1.85 (m, 4H), 1.77 (d, J=12.2 Hz, 1H), 1.68-1.58 (m, 2H), 1.46-1.35 (m, 2H), 1.35-1.28 (m, 1H). 13C NMR (126 MHz, CDCl3) δ 199.2, 191.7, 145.8, 140.9, 140.1, 136.2, 131.8, 127.6, 127.1, 126.0, 124.8, 123.5, 122.2, 119.8, 116.5, 109.6, 48.0, 47.0, 33.7, 32.8, 29.8, 26.0, 25.9. HRMS (ESI) calcd for C31H29NO2S [M+H]+: 480.1992, found: 480.1980.
Synthesis of TE42
TE42 was synthesized by the reaction scheme:
Figure US11479532-20221025-C00016
The starting material 3,4-bis(2,4-difluorophenyl)-1H-pyrrole-2,5-dione, was prepared according to the article, Nacheva, K. et al. Fluorescent properties and resonance energy transfer of 3,4-bis(2,4-difluorophenyl)-maleimide. Org. Biomol. Chem. 10, 7840-7846 (2012), which is hereby incorporated by reference in its entirety.
A round bottom flask was charged with starting material 3,4-bis(2,4-difluorophenyl)-1H-pyrrole-2,5-dione (250 mg, 0.78 mmol), methyl 4-(bromomethyl)benzoate (179 mg, 0.78 mmol), K2CO3 (215 mg, 1.56 mmol), DMF (8 mL), a magnetic stir bar and stirred at rt for 12 h. The reaction was quenched with water, extracted with EtOAc, washed with brine, dried with Na2SO4, solvent removed under reduced pressure and purified using flash column chromatography. The ester was hydrolyzed using HCl/AcOH (1:1, 6 mL) under reflux conditions. The product was filtered and washed with water to neutrality and used without further purification. 1H NMR (500 MHz, DMSO-d6) δ 12.94 (br. s., 1H), 7.93 (d, J=8.3 Hz, 2H), 7.60-7.54 (m, 2H), 7.49 (d, J=7.8 Hz, 2H), 7.38-7.31 (m, 2H), 7.23 (dt, J=2.0, 8.6 Hz, 2H), 4.83 (s, 2H). 13C NMR (126 MHz, DMSO-d6) δ 168.7, 167.0, 162.6 (dd, J=252, 14 Hz), 160.6 (dd, J=253, 14 Hz), 141.3, 133.5, 133.0 (d, J=5 Hz), 130.0, 129.6, 127.6, 113.5 (d, J=15 Hz), 112.0 (d, J=23 Hz), 104.7 (t, J=26 Hz), 41.4.
The carboxylic acid intermediate was transformed into TE42 as previously reported in as previously reported in ACS Chem Biol 2011, 6, 724-732. The four synthetic steps gave TE42 with a 72% overall yield. 1H NMR (500 MHz, CDCl3) δ7.92 (d, J=8.3 Hz, 2H), 7.76 (d, J=7.8 Hz, 2H), 7.72 (d, J=7.3 Hz, 2H), 7.54-7.47 (m, 4H), 7.43-7.37 (m, 2H), 7.36-7.30 (m, 2H), 7.01-6.94 (m, 2H), 6.84-6.78 (m, 2H), 4.85 (s, 2H), 4.26 (t, J=6.1 Hz, 1H), 3.68 (d, J=5.9 Hz, 2H). 13C NMR (101 MHz, CDCl3) δ 191.0, 169.0, 163.8 (dd, J=254, 12 Hz), 161.1 (dd, J=258, 14 Hz), 145.5, 141.2, 141.0, 136.7, 133.3, 132.4 (dd, J=10, 5 Hz), 128.9, 127.73, 127.69, 127.1, 124.7, 119.9, 112.0 (dd, J=22, 4 Hz), 111.8, 104.7 (t, J=25 Hz), 46.7, 41.9, 32.6. HRMS (ESI) calcd for C38H23F4NO3S [M+H]+: 650.1408, found: 650.1425.
General Procedure for the Amidation Reaction Between Thio Esters and Sulfonyl Azides
The amidation reaction between the thio esters and the sulfonyl azides is shown below:
Figure US11479532-20221025-C00017
N-acyl sulfonamides was prepared according to the article, Chem Comm 2012, 48, 1526-1528, which is hereby incorporated by reference in its entirey. All the reactions were performed at 20-30 mg scale. The 9-flourenylmethyl thioester was taken in a 1.5 mL eppendorf and 3.5% DBU/dry DMF solution was added (per 1 μmol of thioester, 4.7 μL of 3.5% DBU/dry DMF solution was added) and the reaction was stirred for a minute. Then the sulfonylazide (1 eq to thioester) was added to the reaction mixture and immediately bubbling was observed. After the reaction was completed in a minute, (monitored by LC-MS) water (200 μL) was added and the pH was adjusted to 7.0 using 1M HCl solution. The reaction mixture was extracted with DCM until there is no product in the aqueous layer (checked by TLC or LC-MS). The product was purified by flash chromatography.
SZ11TA40
1H NMR (500 MHz, DMSO-d6) δ 12.72-12.57 (m, 1H), 8.86 (s, 1H), 8.52 (s, 1H), 8.08 (d, J=8.8 Hz, 2H), 7.89 (d, J=8.8 Hz, 2H), 7.77 (dd, J=1.5, 8.8 Hz, 1H), 7.66 (d, J=8.3 Hz, 2H), 7.60 (d, J=8.8 Hz, 1H), 7.50 (d, J=8.3 Hz, 2H), 3.88 (s, 3H), 3.19-3.10 (m, 1H), 1.78 (t, J=12.2 Hz, 4H), 1.69 (d, J=12.2 Hz, 1H), 1.51-1.34 (m, 5H), 1.30 (s, 9H). 13C NMR (126 MHz, DMSO-d6) δ 198.4, 166.4, 151.2, 144.7, 139.7, 139.0, 138.5, 135.6, 128.3, 126.9, 126.8, 125.9, 125.6, 125.4, 123.4, 123.1, 114.8, 110.6, 46.4, 34.3, 33.3, 31.0, 29.6, 25.6, 25.3. HRMS (ESI) calcd for C33H36N2O4S [M+H]+: 557.2469, found: 557.248.
SZ12TA42
1H NMR (500 MHz, DMSO-d6) δ 7.89-7.84 (m, 4H), 7.56 (dt, J=6.6, 8.4 Hz, 2H), 7.48 (d, J=8.3 Hz, 2H), 7.39-7.32 (m, 6H), 7.31-7.28 (m, 1H), 7.22 (dt, J=2.5, 8.6 Hz, 2H), 7.07 (t, J=6.1 Hz, 1H), 6.97 (td, J=1.2, 7.8 Hz, 1H), 4.79 (s, 2H), 4.42 (d, J=6.4 Hz, 2H). 13C NMR (126 MHz, DMSO-d6) δ 168.7, 167.3, 162.6 (dd, J=251, 13 Hz), 160.0 (dd, J=254, 13 Hz), 149.5, 148.8, 143.2, 141.6, 139.8, 133.5, 133.0 (dd, J=11, 4 Hz), 130.0, 128.7, 127.5, 127.1, 127.0, 118.3, 113.4 (dd, J=16, 2 Hz), 112.1 (dd, J=22, 3 Hz), 110.2, 109.56, 105.7, 104.7 (t, J=26 Hz), 45.9, 41.4. HRMS (ESI) calcd for C37H24F4N4O7S [M+H]+: 745.1375, found: 745.141.
SZ35TA24
1H NMR (400 MHz, DMSO-d6) δ 8.04-8.00 (m, 2H), 7.85 (d, J=8.6 Hz, 2H), 7.80 (d, J=8.6 Hz, 2H), 7.77-7.73 (m, 2H), 7.46-7.39 (m, 2H), 7.24 (d, J=8.2 Hz, 2H), 7.21-7.16 (m, 1H), 7.12-7.07 (m, 4H), 6.86 (d, J=8.6 Hz, 1H), 6.72 (d, J=8.6 Hz, 1H), 3.88 (s, 2H), 3.75 (s, 3H), 3.71 (s, 3H), 3.61 (s, 3H). 13C NMR (101 MHz, DMSO-d6) δ 166.0, 157.4, 156.1, 152.3, 151.2, 146.7, 143.7, 141.9, 139.1, 133.5, 130.4, 130.2, 128.8, 128.5, 128.5, 128.2, 126.7, 125.9, 124.5, 123.9, 119.2, 118.7, 107.8, 60.4, 60.2, 55.8, 35.2. HRMS (ESI) calcd for C35H31NO7S [M+H]+: 610.1894, found: 610.1911.
SZ10TA2
1H NMR (500 MHz, DMSO-d6) δ12.00 (br. s., 1H), 7.94 (d, J=8.8 Hz, 2H), 7.80 (d, J=8.3 Hz, 2H), 7.75 (d, J=8.8 Hz, 2H), 7.60 (d, J=8.3 Hz, 2H), 7.57 (d, J=8.3 Hz, 2H), 7.36-7.30 (m, 2H), 7.20-7.13 (m, 4H), 7.07-7.00 (m, 1H), 6.90 (d, J=8.8 Hz, 2H), 3.70 (s, 2H), 3.67 (br. s., 2H), 3.34-3.27 (m, 4H), 3.19-3.12 (m, 2H), 2.64-2.57 (m, 2H), 1.37-1.31 (m, 4H), 0.92 (s, 6H). 13C NMR (126 MHz, DMSO-d6) δ 164.7, 153.6, 145.0, 143.2, 142.8, 138.8, 135.9, 130.3, 129.0, 128.9, 128.6, 127.7, 127.6, 125.7, 125.4, 118.9, 112.7, 56.9, 56.8, 51.8, 43.3, 37.4, 29.2, 28.5, 27.6. FIRMS (ESI) calcd for C36H42N4O5S3 [M+H]+: 707.2390, found: 707.2403.
ALAS Activity
ALAS activity was determined according the article, Stojanovski, B. M., Breydo, L., Hunter, G. A., Uversky, V. N, Ferreira G. C. (2014) Biochim. Biophys. Acta 1844, 2145-2154, which is hereby incorporated by reference in its entirety. The results are shown in Table 1.
TABLE 1
ALAS activity
TA/SZ-containing
Compounds Compounds IC50 (μM)
TA40-containing compounds SZ10TA40  8.6 ± 0.9
SZ11TA40 19.3 ± 2.7
SZ17TA40 TGS hits, but low ALAS
inhibition
SZ14TA40 Not a TGS hit
SZ31TA40 Not a TGS hit
TA42-containing compounds SZ12TA42  8.6 ± 0.9
SZ27TA42 TGS hits, but low ALAS
inhibition
SZ14TA42 Not a TGS hit
SZ35TA24 31.4 ± 1.8
TA24-containing compounds SZ15TA42 TGS hits, but low ALAS
inhibition
SZ10-containing compounds SZ10TA2  43.0 ± 5.8
SZ10TA15 Not a TGS hit
SZ10TA20 Not a TGS hit
SZ10TA21 Not a TGS hit
SZ10TA25 Not a TGS hit
SZ10TA34 Not a TGS hit
SZ17TA7  50.0 ± 6.1
While the present invention is described herein with reference to illustrative embodiments for particular applications, it should be understood that the invention is not limited thereto. Those having ordinary skill in the art and access to the teachings provided herein will recognize additional modifications, applications, and embodiments within the scope thereof and additional fields in which the present invention would be of significant utility. It is therefore intended by the appended claims to cover any and all such applications, modifications and embodiments within the scope of the present invention.
As used herein, the singular forms “a,” “an” and “the” are intended to include the plural forms as well, unless the context clearly indicates otherwise. Furthermore, to the extent that the terms “including,” “includes,” “having,” “has,” “with” or variants thereof are used in either the detailed description and/or the claims, such terms are intended to be inclusive in a manner similar to the term “comprising.” The transitional terms/phrases (and any grammatical variations thereof) “comprising,” “comprises,” “comprise,” “consisting essentially of,” “consists essentially of” “consisting” and “consists” can be used interchangeably.
All patents, patent applications, provisional applications, and publications referred to or cited herein are incorporated by reference in their entirety, including all figures and tables, to the extent they are not inconsistent with the explicit teachings of this specification.
REFERENCES
  • 1. Fratz, E. J., Stojanvoski, B. M., and Ferreira, G C. (2013) In Handbook of Porphyrin Science (Ferreira, G. C., Kadish, K. M. Smith, K. M. and Guilard, R., Eds.), pp 3-68, World Scientific Publishing Co.
  • 2. Zoubida, K., Goya, L., Deybach, J.-C., and Puy, H. (2013) In Handbook of Porphyrin Science (Ferreira, G. C., Kadish, K. M. Smith, K. M. and Guilard, R., Eds.), pp 89-118, World Scientific Publishing Co.
  • 3. Matthew, M. and Neuberger, A. (1963) Biochem. J. 87, 601-612.
  • 4. Sharpless, K. B. and Manetsch, R. (2006) Expert Opin. Drug Discov. 1, 525-538.
  • 5. Hu, X., Sun, J., Wang, H. G., and Manetsch, R. (2008) J. Am. Chem. Soc. 130, 13820-13821.
  • Hu, X. and Manetsch, R. (2010) Chem. Soc. Rev. 39, 1316-1324.
  • Stojanovski, B. M., Breydo, L., Hunter, G. A., Uversky, V. N, Ferreira G. C. (2014) Biochim. Biophys. Acta 1844, 2145-2154.

Claims (4)

We claim:
1. A method of treating porphyria, the method comprising administering to a subject an effective amount of a composition comprising one or more compounds of Formulas (I-V):
Figure US11479532-20221025-C00018
wherein R1, R2, R3, R4, R5, R6 are independently selected from the group consisting of: H; F; Cl; Br; I; OH; C1-14 linear, branched, or cyclic alkyl; C2-14 linear, branched, or cyclic alkenyl; C2-14 linear, branched, or cyclic alkynyl —OR, where R is C1-14 alkyl or C2-14 alkenyl; C6-14 aryl; C7-28 aralkyl; C7-28 alkaryl; heteroaryl, halogenated alkyl; heterocyclyl; amino; alkylamino; arylamino; dialkylamino, where the alkyls are independently C1-14 alkyl; alkylarylamino; diarylamino; tetraalkylammonium, where the alkyls are independently C1-14 alkyl; aryltrialkylammonium, where the alkyls are independently C1-14 alkyl; diaryldialkylammonium, where the alkyls are independently C1-14 alkyl and the aryls are independently C6-14 aryl; acylamino; hydroxyl; alkoxy; aryloxy; arylalkoxy; acyloxy; nitro; carbamoyl; trifluoromethyl; phenoxy; benzyloxy; alkaryl; arylalkyl; carbamate; hydroxyalkyl; aminoalkyl; alkoxyalkyl; hydroxyalkyl; aminoalkyl; alkoxyalkyl; alkyltriphenylphosphonium; —C(O)R, where R is C1-14 alkyl or C2-14 alkenyl; —C(O)H; —C(O)OH; —OC(O)R where R is C1-14 alkyl or C2-14 alkenyl; —ROC(O)R′ where R and R′ are independently C1-14 alkyl or C2-14 alkenyl; —RC(O)OR′, where R is C1-14 alkylene, C2-14 alkenylene, or arylene and R′ is C1-14 alkyl, C2-14 alkenyl, or aryl; —C(O)OR where R is C1-14 alkyl, C2-14 alkenyl, or aryl; —OCOOR, where R is C1-14 alkyl, C2-14 alkenyl, or aryl; —C(O)NRR′ where R and R′ are independently H, C1-14 alkyl, C2-14 alkenyl, or aryl; —N(R)C(O)R′, where R is C1-14 alkyl, C2-14 alkenyl, or aryl; —N(C(O)R)(C(O)R′), where R and R′ are independently C1-14 alkyl, C2-14 alkenyl, or aryl or R and R′ are combined as C1-14 alkylene, C2-14 alkenylene, or arylene; —OCN; —NCO; —ONO2; —CN; —NC; —NO; —CH═NOH; —B(OH)2; —B(OR)(R′), where R where R and R′ are independently H, C1-14 alkyl, or C2-14 alkenyl; —B(OR)(OR′), are independently H, C1-14 alkyl, or C2-14 alkenyl; —PR2, where R is independently selected from H, C1-14 alkyl, or C2-14 alkenyl; —OP(O)(OR)2, where R is independently selected from H, C1-14 alkyl, or C2-14 alkenyl; —P(O)(R)(OH), where R is selected from C1-14 alkyl or C2-14 alkenyl; —SH; thioalkyl; —SR, where R is selected from C1-14 alkyl or C2-14 alkenyl; —SSR, where R is C1-14 alkyl or C2-14 alkenyl; sulfonamide; —S(O)R, where R is C1-14 alkyl or C2-14 alkenyl; —SO2H; —SO3H; thiocyanate; isothiocyanate; —C(S)R where R is C1-14 alkyl or C2-14 alkenyl; where X is O, N, or S; where V is —CH2—, CO, S, and NR7, where R7 is independently H; C1-14 alkyl; C2-14 alkenyl; heteroalkyl; or heteroaryl;
wherein n is an integer from 1 to 4; and
wherein W is —CH2—, O, S and NR8, where R8 is selected from H, methyl, ethyl, n-propyl, isopropyl, n-butyl, sec-butyl, isobutyl, tert-butyl; ethenyl, propenyl, butenyl, where the double bond can be located at any position in the alkenyl carbon chain, including any alkenyl conformational isomers; heteroalkyl; and heteroaryl.
2. The method of treating porphyria of claim 1, wherein the compound is selected from the group consisting of:
Figure US11479532-20221025-C00019
3. The method of treating porphyria of claim 1, wherein the administering comprises:
oral administration of a capsule, tablet, granule, spray, or syrup;
non-oral administration of an aqueous suspension or an oily preparation as a drip, suppository, salve, or ointment;
injection;
subcutaneously;
intraperitoneally;
intravenously;
intramuscularly;
intradermally;
intraocularly;
intranasally; or
intra-auricularly.
4. The method of treating porphyria of claim 1, wherein the administering is by a controlled released formulation, a depot formulation, or an infusion pump delivery and through at least one of intraocular, intranasal, and intra-auricular pathways.
US16/625,363 2017-06-23 2018-06-21 5-aminolevulinate synthase inhibitors and methods of use thereof Active 2039-01-16 US11479532B2 (en)

Priority Applications (1)

Application Number Priority Date Filing Date Title
US16/625,363 US11479532B2 (en) 2017-06-23 2018-06-21 5-aminolevulinate synthase inhibitors and methods of use thereof

Applications Claiming Priority (3)

Application Number Priority Date Filing Date Title
US201762524341P 2017-06-23 2017-06-23
PCT/US2018/038790 WO2018237163A1 (en) 2017-06-23 2018-06-21 5-aminolevulinate synthase inhibitors and methods of use thereof
US16/625,363 US11479532B2 (en) 2017-06-23 2018-06-21 5-aminolevulinate synthase inhibitors and methods of use thereof

Publications (2)

Publication Number Publication Date
US20210269397A1 US20210269397A1 (en) 2021-09-02
US11479532B2 true US11479532B2 (en) 2022-10-25

Family

ID=64737403

Family Applications (1)

Application Number Title Priority Date Filing Date
US16/625,363 Active 2039-01-16 US11479532B2 (en) 2017-06-23 2018-06-21 5-aminolevulinate synthase inhibitors and methods of use thereof

Country Status (2)

Country Link
US (1) US11479532B2 (en)
WO (1) WO2018237163A1 (en)

Citations (7)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US20040147581A1 (en) 2002-11-18 2004-07-29 Pharmacia Corporation Method of using a Cox-2 inhibitor and a 5-HT1A receptor modulator as a combination therapy
US7183320B2 (en) * 2001-06-06 2007-02-27 Eli Lilly And Company Benzoylsulfonamides and sulfonylbenzamidines for use as antitumour agents
WO2007026028A2 (en) 2005-09-02 2007-03-08 Neuraxo Biopharmaceuticals Gmbh Pharmaceutical composition comprising an iron chelator
US20130281511A1 (en) * 2012-04-10 2013-10-24 Brian Bettencourt Compositions and methods for inhibiting expression of the alas1 gene
US20160022642A1 (en) 2014-07-25 2016-01-28 Yale University Compounds Useful for Promoting Protein Degradation and Methods Using Same
US20160031858A1 (en) 2013-04-12 2016-02-04 Obschestvo S Ogranichennoi Otvetstvennostiyu "Pharmenterprises" Dicarboxylic acid bisamide derivatives, use thereof, pharmaceutical composition based thereon and methods for producing dicarboxylic acid bisamide derivatives
US20160116482A1 (en) * 2013-08-06 2016-04-28 The Penn State Research Foundation Target Binding Molecules Identified by Kinetic Target-Guided Synthesis

Patent Citations (7)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US7183320B2 (en) * 2001-06-06 2007-02-27 Eli Lilly And Company Benzoylsulfonamides and sulfonylbenzamidines for use as antitumour agents
US20040147581A1 (en) 2002-11-18 2004-07-29 Pharmacia Corporation Method of using a Cox-2 inhibitor and a 5-HT1A receptor modulator as a combination therapy
WO2007026028A2 (en) 2005-09-02 2007-03-08 Neuraxo Biopharmaceuticals Gmbh Pharmaceutical composition comprising an iron chelator
US20130281511A1 (en) * 2012-04-10 2013-10-24 Brian Bettencourt Compositions and methods for inhibiting expression of the alas1 gene
US20160031858A1 (en) 2013-04-12 2016-02-04 Obschestvo S Ogranichennoi Otvetstvennostiyu "Pharmenterprises" Dicarboxylic acid bisamide derivatives, use thereof, pharmaceutical composition based thereon and methods for producing dicarboxylic acid bisamide derivatives
US20160116482A1 (en) * 2013-08-06 2016-04-28 The Penn State Research Foundation Target Binding Molecules Identified by Kinetic Target-Guided Synthesis
US20160022642A1 (en) 2014-07-25 2016-01-28 Yale University Compounds Useful for Promoting Protein Degradation and Methods Using Same

Non-Patent Citations (7)

* Cited by examiner, † Cited by third party
Title
Fratz, E. J. et al., "Toward Heme: 5-Aminolevulinate Synthase and Initiation of Porphyrin Synthesis," Handbook of Porphyrin Science, pp. 1-79.
Hu, X. et al., "Bcl-XL-Templated Assembly of Its Own Protein-Protein Interaction Modulator from Fragments Decorated with Thio Acids and Sulfonyl Azides," J. Am. Chem. Soc., 2008,130:13820-13821, American Chemical Society.
Hu, X. et al., "Kinetic target-guided synthesis†," Chemical Society Reviews, 2010, 39:1316-1324, abstract only.
International Search Report in International Application No. PCT/US2018/038790, filed Jun. 21, 2018.
Matthew, M. et al., "Aminomalonate as an Enzyme Inhibitor," Biohem. J., 1963, 87:601-612.
Sharpless, K. B. et al., "In situ click chemistry: a powerful means for lead discovery," Expert Opinion on Drug Discovery, 2006, 1(6):525-538, abstract only.
Stojanovski, B. M. et al., "Catalytically active alkaline molten globular enzyme: Effect of pH and temperature on the structural integrity of 5-aminolevulinate synthase*," Biochim Biophys Acta., Dec. 2014, 1544(12):2145-2154.

Also Published As

Publication number Publication date
WO2018237163A1 (en) 2018-12-27
US20210269397A1 (en) 2021-09-02

Similar Documents

Publication Publication Date Title
TWI841759B (en) Compounds useful to treat influenza virus infections
AU603012B2 (en) N-substituted derivatives of 1-desoxynojirimycin 1- desoxymannojirimycin, processes for their preparation and their use in medicaments
AU2019324522B2 (en) Succinate and fumarate acid addition salts of piperazine derivatives useful as glycosidase inhibitors
US6803365B2 (en) Imidazo[1,3,5]triazinones and the use thereof
AU2020200846A1 (en) Piperidine derivatives as hdac1/2 inhibitors
KR20100051698A (en) Imidazolone derivatives, preparation method thereof and biological use of same
Castro et al. Non-ATP competitive glycogen synthase kinase 3β (GSK-3β) inhibitors: study of structural requirements for thiadiazolidinone derivatives
SI9010633A (en) Process for preparing pteridine-4(3h)-ones and medicaments containing them
EP1560826B1 (en) Pyridopyrimidinone compounds, method for production thereof and medicaments comprising the same
ES2231311T3 (en) TRIAZOLOTRIAZINONAS AND ITS USE.
CN106660992B (en) Dimethylpyridine derivative and medical application thereof
CN105924362A (en) Aromatic cyclopropyl amine compound, pharmaceutically acceptable salts thereof, and preparation method and application thereof
Aziz-ur-Rehman et al. Synthesis, characterization and biological screening of various S-substituted derivatives of 5-(3-Nitrophenyl)-1, 3, 4-Oxadiazole-2-thiol
US6821986B2 (en) Amino acid derivatives and their use as medicines
AU2011336217B2 (en) KAT II inhibitors
HRP20010135A2 (en) Novel natural product derivatives
US11479532B2 (en) 5-aminolevulinate synthase inhibitors and methods of use thereof
EP3566749A1 (en) Thiazole derivative and applications thereof
EP0415634A2 (en) Benzazabicyclic carbamates as cholinesterase inhibitors
CA2730071A1 (en) Antineoplastic derivatives of 4-oxo-l, 4-dihydro-quinolin?, preparation thereof, and therapeutic use thereof
KR100227715B1 (en) Pharmaceutical compositions containing a-oxopyrrolo[2,3-b]indole acetic acid, esters, amides and related analogs
JPS606348B2 (en) New polyamines
US20180104220A1 (en) Imidazole compound
Brugier et al. Synthesis and reactivity of alkyl (4-aminothien-3-yl) carbamates
US6777416B2 (en) Isoxazolo pyrimidinones and the use thereof

Legal Events

Date Code Title Description
FEPP Fee payment procedure

Free format text: ENTITY STATUS SET TO UNDISCOUNTED (ORIGINAL EVENT CODE: BIG.); ENTITY STATUS OF PATENT OWNER: SMALL ENTITY

AS Assignment

Owner name: UNIVERSITY OF SOUTH FLORIDA, FLORIDA

Free format text: ASSIGNMENT OF ASSIGNORS INTEREST;ASSIGNORS:MANETSCH, ROMAN;FERREIRA, GLORIA C.;STOJANOVSKI, BOSKO M.;AND OTHERS;SIGNING DATES FROM 20180718 TO 20190323;REEL/FRAME:051642/0835

FEPP Fee payment procedure

Free format text: ENTITY STATUS SET TO SMALL (ORIGINAL EVENT CODE: SMAL); ENTITY STATUS OF PATENT OWNER: SMALL ENTITY

Free format text: ENTITY STATUS SET TO MICRO (ORIGINAL EVENT CODE: MICR); ENTITY STATUS OF PATENT OWNER: SMALL ENTITY

STPP Information on status: patent application and granting procedure in general

Free format text: DOCKETED NEW CASE - READY FOR EXAMINATION

STPP Information on status: patent application and granting procedure in general

Free format text: NON FINAL ACTION MAILED

STPP Information on status: patent application and granting procedure in general

Free format text: RESPONSE TO NON-FINAL OFFICE ACTION ENTERED AND FORWARDED TO EXAMINER

FEPP Fee payment procedure

Free format text: ENTITY STATUS SET TO SMALL (ORIGINAL EVENT CODE: SMAL); ENTITY STATUS OF PATENT OWNER: SMALL ENTITY

STPP Information on status: patent application and granting procedure in general

Free format text: NOTICE OF ALLOWANCE MAILED -- APPLICATION RECEIVED IN OFFICE OF PUBLICATIONS

STPP Information on status: patent application and granting procedure in general

Free format text: AWAITING TC RESP., ISSUE FEE NOT PAID

STPP Information on status: patent application and granting procedure in general

Free format text: NOTICE OF ALLOWANCE MAILED -- APPLICATION RECEIVED IN OFFICE OF PUBLICATIONS

STPP Information on status: patent application and granting procedure in general

Free format text: AWAITING TC RESP., ISSUE FEE NOT PAID

STPP Information on status: patent application and granting procedure in general

Free format text: NOTICE OF ALLOWANCE MAILED -- APPLICATION RECEIVED IN OFFICE OF PUBLICATIONS

STPP Information on status: patent application and granting procedure in general

Free format text: PUBLICATIONS -- ISSUE FEE PAYMENT VERIFIED

STCF Information on status: patent grant

Free format text: PATENTED CASE