TW202210505A - Antibodies against sars-cov-2 - Google Patents
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Abstract
Description
關於序列表之聲明Statement Regarding Sequence Listing
以文本格式代替紙張複本提供與本申請案相關之序列表,且特此以引用之方式併入本說明書中。含有序列表之正文檔案之名稱為930585_409WO_SEQUENCE_LISTING.txt。2021年五月7日產生之正文檔案係約489 KB且經由EFS-Web以電子方式提交。The Sequence Listing pertaining to this application is provided in text format in lieu of a paper copy, and is hereby incorporated by reference into this specification. The name of the text file containing the sequence listing is 930585_409WO_SEQUENCE_LISTING.txt. The text file generated on May 7, 2021 is approximately 489 KB and submitted electronically via EFS-Web.
本發明係有關於抗SARS-COV-2之抗體。The present invention relates to antibodies against SARS-COV-2.
發明背景Background of the Invention
2019年末一種新穎β冠狀病毒出現於中國武漢。截至2021年五月2日,已經確認全球有約1.52億感染此病毒(被稱為SARS-CoV-2及武漢冠狀病毒等其他名稱)案例,且已導致約319.5萬死亡。需要用於預防或治療SARS-CoV-2感染之療法。A novel betacoronavirus emerged in Wuhan, China in late 2019. As of May 2, 2021, approximately 152 million cases of infection with this virus (known as SARS-CoV-2 and other names such as Wuhan coronavirus) have been confirmed worldwide, and approximately 3.195 million deaths have been reported. There is a need for therapy to prevent or treat SARS-CoV-2 infection.
依據本發明之一實施例,係特地提出一種抗體或其抗原結合片段,其包含一重鏈可變域(VH)及一輕鏈可變域(VL),該重鏈可變域(VH)包含一CDRH1、一CDRH2及一CDRH3,且該輕鏈可變域(VL)包含一CDRL1、一CDRL2及一CDRL3,其中: (i)該CDRH1包含根據以下中之任一者之胺基酸序列或由其組成:SEQ ID NO.: 400、23、33、43、53、63、75、85、97、107、120、130、140、147、160、170、174、183、190、199、209、219、229、241、255、265、275、285、299、313、323、333、370、380、390、410、420、430、435、445、455、465、475、485、495、505、515、525、535、545、555、565、575、585、595、605、615、631及693,或其包含一個、二個或三個酸取代之一序列變異體,該等取代中之一或多者任擇地為一守恆取代及/或為對一經生殖系編碼之胺基酸之一取代; (ii)該CDRH2包含根據以下中之任一者之胺基酸序列或由其組成:SEQ ID NO.: 401、24、34、44、54、64、76、86、98、108、121、131、141、148、151、161、171、184、200、210、220、230、242、256、266、276、286、300、314、324、334、352、360、362、364、366、371、381、391、411、421、431、436、446、456、466、476、486、496、506、516、526、536、546、556、566、576、586、596、606、616、625、632、635、637、639、641、643、645、647、649、651、653、655、657、659、661、663、665、667、669、671、673、675、677、679、681、683、685及694,或其包含一個、二個或三個胺基酸取代之一序列變異體,該等取代中之一或多者任擇地為一守恆取代及/或為對一經生殖系編碼之胺基酸之一取代; (iii)該CDRH3包含根據以下中之任一者之胺基酸序列或由其組成:SEQ ID NO.: 766、25、35、45、55、65、77、87、99、109、122、132、142、149、162、164、165、172、176、177、179、180、185、187、188、201、211、221、231、243、257、267、277、287、301、315、325、335、354、372、382、392、412、422、432、437、447、457、467、477、487、497、507、517、527、537、547、557、567、577、587、597、607、617、627、633、695、751、753、755、757、760、763、765及402,或其包含一個、二個或三個胺基酸取代之一序列變異體,該等取代中之一或多者任擇地為一守恆取代及/或為對一經生殖系編碼之胺基酸之一取代; (iv)該CDRL1包含根據以下中之任一者之胺基酸序列或由其組成:SEQ ID NO.: 404、27、37、47、57、67、79、89、101、111、124、134、144、152、155、156、158、159、166、181、192、203、213、223、233、245、259、269、279、289、303、317、327、337、356、374、384、394、414、424、439、449、459、469、479、489、499、509、519、529、539、549、559、569、579、589、599、609、619、687及697,或其包含一個、二個或三個胺基酸取代之一序列變異體,該等取代中之一或多者任擇地為一守恆取代及/或為對一經生殖系編碼之胺基酸之一取代; (v)該CDRL2包含根據以下中之任一者之胺基酸序列或由其組成:SEQ ID NO.: 405、28、38、48、58、68、80、90、102、112、125、135、145、153、167、182、193、204、214、224、234、246、260、270、280、290、304、318、328、338、375、385、395、415、425、440、450、460、470、480、490、500、510、520、530、540、550、560、570、580、590、600、610、620、688及698,或其包含一個、二個或三個胺基酸取代之一序列變異體,該等取代中之一或多者任擇地為一守恆取代及/或為對一經生殖系編碼之胺基酸之一取代;及/或 (vi)該CDRL3包含根據以下中之任一者之胺基酸序列或由其組成:SEQ ID NO.: 406、29、39、49、59、69、81、91、103、113、126、136、146、169、195、197、205、215、225、235、247、261、271、281、291、305、319、329、339、358、376、386、396、416、426、441、451、461、471、481、491、501、511、521、531、541、551、561、571、581、591、601、611、621、689、699、745及747,或其包含一個、二個或三個胺基酸取代之一序列變異體,該等取代中之一或多者任擇地為一守恆取代及/或為對一經生殖系編碼之胺基酸之一取代, 其中該抗體或抗原結合片段能夠結合至表現於一宿主細胞之一細胞表面上及/或一病毒粒子上之SARS-CoV-2的一表面醣蛋白。According to an embodiment of the present invention, an antibody or an antigen-binding fragment thereof is specially proposed, which comprises a heavy chain variable domain (VH) and a light chain variable domain (VL), and the heavy chain variable domain (VH) comprises A CDRH1, a CDRH2 and a CDRH3, and the light chain variable domain (VL) comprises a CDRL1, a CDRL2 and a CDRL3, wherein: (i) the CDRH1 comprises or consists of an amino acid sequence according to any one of the following: SEQ ID NO.: 400, 23, 33, 43, 53, 63, 75, 85, 97, 107, 120, 130, 140, 147, 160, 170, 174, 183, 190, 199, 209, 219, 229, 241, 255, 265, 275, 285, 299, 313, 323, 333, 370, 380, 390, 410, or including one , a sequence variant of two or three acid substitutions, one or more of these substitutions optionally being a conservative substitution and/or a substitution to a germline encoded amino acid; (ii) the CDRH2 comprises or consists of an amino acid sequence according to any one of the following: SEQ ID NO.: 401, 24, 34, 44, 54, 64, 76, 86, 98, 108, 121, 131, 141, 148, 151, 161, 171, 184, 200, 210, 220, 230, 242, 256, 266, 276, 286, 300, 314, 324, 334, 352, 360, 362, 364, 366, 371, 381, 391, 411, 421, 431, 436, 446, 456, 466, 476, 486, 496, 506, 516, 526, 536, 546, 556, 566, 576, 586, 596, 606, 616, 625, 632, 635, 637, 639, 641, 643, 645, 647, 649, 651, 653, 655, 657, 659, 661, 663, 665, 667, 669, 671, 673, 675, 677, 679, 681, 683, 685 and 694, or a sequence variant thereof comprising one, two or three amino acid substitutions, one or more of which are optionally a conservative substitution and/or a Substitution of one of the germline encoded amino acids; (iii) the CDRH3 comprises or consists of an amino acid sequence according to any one of the following: SEQ ID NO.: 766, 25, 35, 45, 55, 65, 77, 87, 99, 109, 122, 132, 142, 149, 162, 164, 165, 172, 176, 177, 179, 180, 185, 187, 188, 201, 211, 221, 231, 243, 257, 267, 277, 287, 301, 315, 325, 335, 354, 372, 382, 392, 412, 422, 432, 437, 447, 457, 467, 477, 487, 497, 507, 517, 527, 537, 547, 557, 567, 577, 587, 597, 607, 617, 627, 633, 695, 751, 753, 755, 757, 760, 763, 765 and 402, or a sequence variant thereof comprising one, two or three amino acid substitutions, and the like One or more of the substitutions are optionally a conservative substitution and/or a substitution to a germline encoded amino acid; (iv) the CDRL1 comprises or consists of an amino acid sequence according to any of the following: SEQ ID NO.: 404, 27, 37, 47, 57, 67, 79, 89, 101, 111, 124, 134, 144, 152, 155, 156, 158, 159, 166, 181, 192, 203, 213, 223, 233, 245, 259, 269, 279, 289, 303, 317, 327, 337, 356, 374, 384, 394, 414, 424, 439, 449, 459, 469, 479, 489, 499, 509, 519, 529, 539, 549, 559, 569, 579, 589, 599, 609, 619, 687 and 697, or a sequence variant comprising one, two or three amino acid substitutions, one or more of which are optionally a conserved substitution and/or a change to a germline encoded amino acid a replacement; (v) the CDRL2 comprises or consists of an amino acid sequence according to any one of the following: SEQ ID NO.: 405, 28, 38, 48, 58, 68, 80, 90, 102, 112, 125, 135, 145, 153, 167, 182, 193, 204, 214, 224, 234, 246, 260, 270, 280, 290, 304, 318, 328, 338, 375, 385, 395, 415, 425, 440, 450, 460, 470, 480, 490, 500, 510, 520, 530, 540, 550, 560, 570, 580, 590, 600, 610, 620, 688 and 698, or including one, two or three A sequence variant of amino acid substitutions, one or more of which are optionally a conservative substitution and/or a substitution to a germline-encoded amino acid; and/or (vi) the CDRL3 comprises or consists of an amino acid sequence according to any of the following: SEQ ID NO.: 406, 29, 39, 49, 59, 69, 81, 91, 103, 113, 126, 136, 146, 169, 195, 197, 205, 215, 225, 235, 247, 261, 271, 281, 291, 305, 319, 329, 339, 358, 376, 386, 396, 416, 426, 441, 451, 461, 471, 481, 491, 501, 511, 521, 531, 541, 551, 561, 571, 581, 591, 601, 611, 621, 689, 699, 745 and 747, or including one, two a sequence variant of one or three amino acid substitutions, one or more of which is optionally a conservative substitution and/or a substitution to a germline-encoded amino acid, wherein the antibody or antigen-binding fragment is capable of binding to a surface glycoprotein of SARS-CoV-2 expressed on a cell surface of a host cell and/or on a virion.
較佳實施例之詳細說明DETAILED DESCRIPTION OF THE PREFERRED EMBODIMENT
本發明提供抗體及抗原結合片段,其結合至SARS-CoV-2冠狀病毒(例如,本文所述之SARS-CoV-2表面醣蛋白及/或RBD,在SARS-CoV-2病毒粒子中及/或表現於藉由SARS-CoV-2冠狀病毒感染的細胞之表面上)。在某些實施例中,本發明所揭露之抗體及抗原結合片段可中和活體外感染模型及/或動物感染模型及/或人類個體中之SARS-CoV-2感染。亦提供編碼抗體及抗原結合片段之聚核苷酸、載體、宿主細胞及相關組成物,以及使用該等抗體、核酸、載體、宿主細胞及相關組成物來治療(例如,降低、延遲、消除或預防)個體之SARS-CoV-2感染的方法及/或用於製造用以治療個體之SARS-CoV-2感染的藥劑。The present invention provides antibodies and antigen-binding fragments that bind to SARS-CoV-2 coronaviruses (eg, SARS-CoV-2 surface glycoproteins and/or RBDs described herein, in SARS-CoV-2 virions and/or or expressed on the surface of cells infected by the SARS-CoV-2 coronavirus). In certain embodiments, the antibodies and antigen-binding fragments disclosed herein can neutralize SARS-CoV-2 infection in in vitro infection models and/or animal infection models and/or in human subjects. Also provided are polynucleotides, vectors, host cells, and related compositions encoding antibodies and antigen-binding fragments, and the use of such antibodies, nucleic acids, vectors, host cells, and related compositions for treatment (e.g., reducing, delaying, eliminating or A method for preventing) SARS-CoV-2 infection in an individual and/or for the manufacture of a medicament for treating SARS-CoV-2 infection in an individual.
在更詳細闡述本揭露內容之前,其理解可有助於提供本文中待使用之某些術語的定義。其他定義闡述於整篇本揭露內容中。Before describing the present disclosure in greater detail, an understanding may be helpful to provide definitions of certain terms to be used herein. Other definitions are set forth throughout this disclosure.
如本文所用,「SARS-CoV-2」,在本文中亦稱為「武漢海產食品市場肺炎病毒」或「武漢冠狀病毒」或「武漢CoV」或「新穎CoV」或「nCoV」或「2019 nCoV」或「武漢nCoV」,為一種咸信具有譜系B (薩貝冠狀病毒)之β冠狀病毒。2019年末,在中國湖北省武漢市首次識別到SARS-CoV-2,且到2020年年初,在中國境內及世界其他地區傳播。SARS-CoV-2感染之症狀包括發熱、乾咳及呼吸困難。As used herein, "SARS-CoV-2", also referred to herein as "Wuhan Seafood Market Pneumonia Virus" or "Wuhan Coronavirus" or "Wuhan CoV" or "novel CoV" or "nCoV" or "2019 nCoV" ” or “Wuhan nCoV”, a betacoronavirus believed to have lineage B (Sabe coronavirus). In late 2019, SARS-CoV-2 was first identified in Wuhan, Hubei Province, China, and by early 2020, spread within China and the rest of the world. Symptoms of SARS-CoV-2 infection include fever, dry cough and difficulty breathing.
SARS-CoV-2分離株武漢-Hu-1之基因體序列提供於SEQ ID NO.:1 (亦參見GenBank MN908947.3,2020年一月23日)中,且基因體之胺基酸轉譯提供於SEQ ID NO.:2 (亦參見GenBank QHD43416.1,2020年一月23日)中。如同其他冠狀病毒(例如,SARS-CoV-1),SARS-CoV-2包含含有受體結合域(RBD)之「刺突」或表面(「S」) I型跨膜醣蛋白。咸信RBD藉由結合至細胞表面受體血管收縮素轉化酶2 (ACE2)介導譜系B SARS冠狀病毒進入呼吸上皮細胞。特定言之,咸信病毒RBD中之受體結合模體(RBM)與ACE2相互作用。The genome sequence of the SARS-CoV-2 isolate Wuhan-Hu-1 is provided in SEQ ID NO.: 1 (see also GenBank MN908947.3, January 23, 2020), and the amino acid translation of the genome provides In SEQ ID NO.: 2 (see also GenBank QHD43416.1, January 23, 2020). Like other coronaviruses (eg, SARS-CoV-1), SARS-CoV-2 contains a "spike" or surface ("S") type I transmembrane glycoprotein containing a receptor binding domain (RBD). It is believed that RBD mediates entry of lineage B SARS coronavirus into respiratory epithelial cells by binding to the cell surface receptor angiotensin-converting enzyme 2 (ACE2). Specifically, it is believed that the receptor binding motif (RBM) in the viral RBD interacts with ACE2.
武漢-Hu-1表面醣蛋白之胺基酸序列提供於SEQ ID NO.:3中。武漢-Hu-1 RBD之胺基酸序列提供於SEQ ID NO.:4中。SARS-CoV-2 S蛋白與SARS-CoV-1具有約73%胺基酸序列一致性。武漢-Hu-1 RBM之胺基酸序列提供於SEQ ID NO.:5中。武漢-Hu-1 RBD與SARS-CoV-1 RBD具有約75%至77%胺基酸序列相似性,且武漢-Hu-1 RBM與SARS-CoV-1 RBM具有約50%胺基酸序列相似性。The amino acid sequence of Wuhan-Hu-1 surface glycoprotein is provided in SEQ ID NO.:3. The amino acid sequence of Wuhan-Hu-1 RBD is provided in SEQ ID NO.:4. The S protein of SARS-CoV-2 shares approximately 73% amino acid sequence identity with SARS-CoV-1. The amino acid sequence of Wuhan-Hu-1 RBM is provided in SEQ ID NO.:5. Wuhan-Hu-1 RBD shares about 75% to 77% amino acid sequence similarity with SARS-CoV-1 RBD, and Wuhan-Hu-1 RBM shares about 50% amino acid sequence similarity with SARS-CoV-1 RBM sex.
除非本文中另外規定,否則SARS-CoV-2武漢Hu-1係指包含任擇地具有SEQ ID NO.:1中所闡述之基因體序列的SEQ ID NO.:2、3及4中之任一者或多者中所闡述之胺基酸序列的病毒。Unless otherwise specified herein, SARS-CoV-2 Wuhan Hu-1 refers to comprising any of SEQ ID NO.: 2, 3 and 4, optionally having the gene body sequence set forth in SEQ ID NO.: 1 One or more of the amino acid sequences set forth in the virus.
已出現多種新興SARS-CoV-2變異體。一些SARS-CoV-2變異體含有N439K突變,該突變增強與人類ACE2受體之結合親和力(Thomson, E.C.等人,The circulating SARS-CoV-2 spike variant N439K maintains fitness while evading antibody-mediated immunity. bioRxiv, 2020)。一些SARS-CoV-2變異體含有與增加之傳播性相關的N501Y突變,包括分別發現於英國及南非的譜系B.1.1.7 (亦稱為20I/501Y.V1及VOC 202012/01;(del69-70、del144、N501Y、A570D、D614G、P681H、T716I、S982A及D1118H突變))及B.1.351 (亦稱為20H/501Y.V2;L18F、D80A、D215G、R246I、K417N、E484K、N501Y、D614G及A701V突變)(Tegally, H.,等人,Emergence and rapid spread of a new severe acute respiratory syndrome-related coronavirus 2 (SARS-CoV-2) lineage with multiple spike mutations in South Africa. medRxiv, 2020: p. 2020.12.21.20248640; Leung, K.,等人,Early empirical assessment of the N501Y mutant strains of SARS-CoV-2 in the United Kingdom, October to November 2020. medRxiv, 2020: p. 2020.12.20.20248581)。B.1.351亦包括在SARS-CoV2刺突蛋白之RBD域中的二個其他突變K417N及E484K (Tegally, H.等人, Emergence and rapid spread of a new severe acute respiratory syndrome-related coronavirus 2 (SARS-CoV-2) lineage with multiple spike mutations in South Africa. medRxiv, 2020: p. 2020.12.21.20248640)。其他SARS-CoV-2變異體包括譜系B.1.1.28,其在巴西首次報導;變異體P.1,譜系B.1.1.28 (亦稱為20J/501Y.V3),其在日本首次報導;變異體L452R,其在美國加利福尼亞首次報導(Pan American Health Organization, Epidemiological update: Occurrence of variants of SARS-CoV-2 in the Americas,2021年一月20日,可在reliefweb.int/sites/reliefweb.int/files/resources/2021-jan-20-phe-epi-update-SARS-CoV-2.pdf獲得)。其他SARS-CoV-2變異體包括分枝系19A之SARS CoV-2;分枝系19B之SARS CoV-2;分枝系20A之SARS CoV-2;分枝系20B之SARS CoV-2;分枝系20C之SARS CoV-2;分枝系20D之SARS CoV-2;分枝系20E (EU1)之SARS CoV-2;分枝系20F之SARS CoV-2;分枝系20G之CoV-2;SARS CoV-2 B1.1.207;及Rambaut, A.等人, A dynamic nomenclature proposal for SARS-CoV-2 lineages to assist genomic epidemiology. Nat Microbiol 5, 1403-1407 (2020)中所述之其他SARS CoV-2譜系。前述SARS-CoV-2變異體及其胺基酸及核苷酸序列以引用的方式併入本文中。因此,應理解SARS-CoV-2包括武漢Hu-1及其變異體,包括本發明所揭露之變異體。Multiple emerging SARS-CoV-2 variants have emerged. Some SARS-CoV-2 variants contain the N439K mutation that enhances binding affinity to the human ACE2 receptor (Thomson, EC et al., The circulating SARS-CoV-2 spike variant N439K maintains fitness while evading antibody-mediated immunity. bioRxiv , 2020). Some SARS-CoV-2 variants contain the N501Y mutation associated with increased transmissibility, including lineage B.1.1.7 found in the UK and South Africa, respectively (also known as 20I/501Y.V1 and VOC 202012/01; (del69 -70, del144, N501Y, A570D, D614G, P681H, T716I, S982A and D1118H mutations)) and B.1.351 (also known as 20H/501Y.V2; L18F, D80A, D215G, R246I, K417N, E484K, N501Y, D614G and A701V mutation) (Tegally, H., et al., Emergence and rapid spread of a new severe acute respiratory syndrome-related coronavirus 2 (SARS-CoV-2) lineage with multiple spike mutations in South Africa. medRxiv, 2020: p. 2020.12.21.20248640; Leung, K., et al., Early empirical assessment of the N501Y mutant strains of SARS-CoV-2 in the United Kingdom, October to November 2020. medRxiv, 2020: p. 2020.12.20.20248581). B.1.351 also includes two other mutations K417N and E484K in the RBD domain of the SARS-CoV2 spike protein (Tegally, H. et al., Emergence and rapid spread of a new severe acute respiratory syndrome-related coronavirus 2 (SARS- CoV-2) lineage with multiple spike mutations in South Africa. medRxiv, 2020: p. 2020.12.21.20248640). Other SARS-CoV-2 variants include lineage B.1.1.28, which was first reported in Brazil; variant P.1, lineage B.1.1.28 (also known as 20J/501Y.V3), which was first reported in Japan Variant L452R, which was first reported in California, USA (Pan American Health Organization, Epidemiological update: Occurrence of variants of SARS-CoV-2 in the Americas, January 20, 2021, available at reliefweb.int/sites/reliefweb. int/files/resources/2021-jan-20-phe-epi-update-SARS-CoV-2.pdf). Other SARS-CoV-2 variants include SARS CoV-2 of clade 19A; SARS CoV-2 of clade 19B; SARS CoV-2 of clade 20A; SARS CoV-2 of clade 20B; SARS CoV-2 of clade 20C; SARS CoV-2 of clade 20D; SARS CoV-2 of clade 20E (EU1); SARS CoV-2 of clade 20F; CoV-2 of clade 20G ; SARS CoV-2 B1.1.207; and Rambaut, A. et al., A dynamic nomenclature proposal for SARS-CoV-2 lineages to assist genomic epidemiology. Other SARS CoVs described in Nat Microbiol 5, 1403-1407 (2020) -2 Pedigree. The aforementioned SARS-CoV-2 variants and their amino acid and nucleotide sequences are incorporated herein by reference. Therefore, it should be understood that SARS-CoV-2 includes Wuhan Hu-1 and its variants, including the variants disclosed in the present invention.
在本說明書中,除非另外指明,否則任何濃度範圍、百分比範圍、比率範圍或整數範圍應理解為包括在所列舉範圍內之任何整數值及(在適當時)其分數(諸如整數之十分之一及百分之一)。此外,除非另外指明,否則本文中所述之與諸如聚合物次單位、尺寸或厚度之任何物理特徵相關之任何數值範圍理解為包括所述範圍內之任何整數。如本文所用,除非另外指明,否則術語「約」意謂指定範圍、值或結構之±20%。應理解,如本文中所使用之術語「一(a/an)」係指所列舉之組分之「一或多者」。應瞭解,替代物(例如「或」)之使用意謂替代物之一者、二者或其任何組合。如本文所用,術語「包括」、「具有」及「包含」同義地使用,該等術語及其變化形式意欲被理解為非限制性的。In this specification, unless otherwise indicated, any concentration range, percentage range, ratio range or integer range should be understood to include any integer value within the recited range and, where appropriate, a fraction thereof (such as tenths of an integer) one and one percent). Furthermore, unless otherwise indicated, any numerical range described herein in relation to any physical characteristic such as a polymer subunit, size, or thickness is understood to include any integer within the range. As used herein, unless otherwise indicated, the term "about" means ±20% of the specified range, value or structure. It is to be understood that the term "a/an" as used herein refers to "one or more" of the listed components. It should be understood that the use of an alternative (eg, "or") means one of the alternatives, both, or any combination thereof. As used herein, the terms "including", "having" and "comprising" are used synonymously, and these terms and variations thereof are intended to be construed as non-limiting.
「任擇的」或「任擇地」意謂隨後描述之可能發生或可能不發生之要素、組分、事件或狀況,且該說明書包括該要素、組分、事件或狀況發生之情況及不發生之情況。"Optional" or "optionally" means that a subsequently described element, component, event or circumstance may or may not occur, and that the description includes instances in which such element, component, event or circumstance occurs and in which it does not occur situation that occurred.
另外,應理解,來源於本文所述之結構及次單位之各種組合的個別構築體或構築體之群體係由本申請案揭露,其程度如同各構築體或構築體之群體單獨地闡述一般。因此,特定結構或特定次單位之選擇在本揭露內容之範疇內。Additionally, it should be understood that individual constructs or groups of constructs derived from the various combinations of structures and subunits described herein are disclosed by this application to the same extent as if each construct or group of constructs were individually described. Accordingly, the selection of specific structures or specific subunits is within the scope of this disclosure.
術語「主要由…組成」不同於「包含」,且係指主張之指定物質或步驟,或實質上不影響所主張之標的物的基本特徵的物質或步驟。舉例而言,當蛋白質域、區域、模組或蛋白質之胺基酸序列包括延伸、刪除、突變或其組合(例如,在胺基或羧基末端處或在域之間的胺基酸)時,域、區域或模組(例如結合域)或蛋白質「基本上由特定胺基酸序列組成」,其組合地佔域、區域、模組或蛋白質之長度的至多20% (例如,至多15%、10%、8%、6%、5%、4%、3%、2%或1%)且不實質上影響(亦即,活性降低不超過50%,諸如不超過40%、30%、25%、20%、15%、10%、5%或1%)域、區域、模組或蛋白質之活性(例如,結合蛋白質之目標結合親和力)。The term "consisting essentially of" is different from "comprising," and refers to the specified substance or step claimed, or a substance or step that does not materially affect the essential characteristics of the claimed subject matter. For example, when the amino acid sequence of a protein domain, region, module, or protein includes extensions, deletions, mutations, or combinations thereof (eg, amino acids at the amino or carboxyl termini or between domains), A domain, region, or module (e.g., a binding domain) or protein "consists essentially of a specific amino acid sequence" which in combination occupies up to 20% (e.g., up to 15%, 10%, 8%, 6%, 5%, 4%, 3%, 2%, or 1%) and do not substantially affect (that is, the activity is reduced by no more than 50%, such as by no more than 40%, 30%, 25% %, 20%, 15%, 10%, 5% or 1%) domain, region, module or protein activity (eg, target binding affinity of the binding protein).
如本文所用,「胺基酸」係指天然存在及合成之胺基酸,以及以類似於天然存在之胺基酸的方式起作用的胺基酸類似物及胺基酸模擬物。天然存在之胺基酸為由遺傳密碼編碼之胺基酸以及之後經修飾之彼等胺基酸,例如羥基脯胺酸、γ-羧基麩胺酸及O-磷絲胺酸。胺基酸類似物係指具有與天然存在之胺基酸相同之基本化學結構(亦即α-碳與氫、羧基、胺基及R基團結合)的化合物,例如高絲胺酸、正白胺酸、甲硫胺酸亞碸、甲硫胺酸甲基鋶。此等類似物具有經修飾之R基團(例如正白胺酸)或經修飾之肽主鏈,然而保持與天然存在之胺基酸相同之基本化學結構。胺基酸模擬物係指具有與胺基酸之一般化學結構不同之結構,但以與天然存在之胺基酸類似之方式發揮功能的化合物。As used herein, "amino acid" refers to both naturally occurring and synthetic amino acids, as well as amino acid analogs and amino acid mimetics that function in a manner similar to naturally occurring amino acids. Naturally occurring amino acids are those encoded by the genetic code and those amino acids that are subsequently modified, such as hydroxyproline, gamma-carboxyglutamic acid, and O-phosphoserine. Amino acid analogs refer to compounds that have the same basic chemical structure as naturally occurring amino acids (i.e. α-carbon combined with hydrogen, carboxyl, amine and R groups), such as homoserine, norleucine acid, methionine, methionine, methyl methionine. These analogs have modified R groups (eg, n-leucine) or modified peptide backbones, yet retain the same basic chemical structure as a naturally occurring amino acid. An amino acid mimetic refers to a compound that has a structure that differs from the general chemical structure of an amino acid, but functions in a manner similar to that of a naturally occurring amino acid.
如本文所用,「突變」係指核酸分子或多肽分子之序列分別與參考或野生型核酸分子或多肽分子相比的變化。突變可引起若干不同類型之序列的變化,包括核苷酸或胺基酸之取代、插入或刪除。As used herein, "mutation" refers to a change in the sequence of a nucleic acid molecule or polypeptide molecule compared to a reference or wild-type nucleic acid molecule or polypeptide molecule, respectively. Mutations can cause several different types of sequence changes, including nucleotide or amino acid substitutions, insertions, or deletions.
「守恆取代」係指不顯著影響或改變特定蛋白質之結合特徵的胺基酸取代。通常,守恆取代為經取代之胺基酸殘基置換為具有類似側鏈之胺基酸殘基的取代。守恆取代包括在以下組中之一者中發現之取代:第1組;丙胺酸(Ala或A)、甘胺酸(Gly或G)、絲胺酸(Ser或S)、蘇胺酸(Thr或T);第2組:天冬胺酸(Asp或D)、麩胺酸(Glu或Z);第3組:天冬醯胺(Asn或N)、麩醯胺(Gln或Q);第4組:精胺酸(Arg或R)、離胺酸(Lys或K)、組胺酸(His或H);第5組:異白胺酸(Ile或I)、白胺酸(Leu或L)、甲硫胺酸(Met或M)、纈胺酸(Val或V);及第6組:苯丙胺酸(Phe或F)、酪胺酸(Tyr或Y)、色胺酸(Trp或W)。另外地或可替代地,胺基酸可藉由類似功能、化學結構或組成(例如,酸性、鹼性、脂族、芳族或含硫)分至守恆取代組中。舉例而言,脂族分組可包括出於取代之目的的Gly、Ala、Val、Leu及Ile。其他守恆取代組包括:含硫:Met及半胱胺酸(Cys或C);酸性:Asp、Glu、Asn及Gln;小脂族、非極性或略微極性殘基:Ala、Ser、Thr、Pro及Gly;極性、帶負電殘基及其醯胺:Asp、Asn、Glu及Gln;極性、帶正電殘基:His、Arg及Lys;大脂族、非極性殘基:Met、Leu、Ile、Val及Cys;及大芳族殘基:Phe、Tyr及Trp。額外資訊可見於Creighton (1984) Proteins, W.H. Freeman and Company。"Conservative substitution" refers to amino acid substitutions that do not significantly affect or alter the binding characteristics of a particular protein. Typically, a conservative substitution is one in which a substituted amino acid residue is replaced by an amino acid residue with a similar side chain. Conserved substitutions include substitutions found in one of the following groups:
如本文所用,「蛋白質」或「多肽」係指胺基酸殘基之聚合物。蛋白質適用於天然存在之胺基酸聚合物,以及適用於其中一或多個胺基酸殘基為相應天然存在之胺基酸的人工化學模擬物的胺基酸聚合物,及非天然存在之胺基酸聚合物。亦涵蓋本揭露內容之蛋白質、肽及多肽的變異體。在某些實施例中,變異體蛋白質、肽及多肽包含或由與本文所述之經定義或參考胺基酸序列的胺基酸序列至少70%、75%、80%、85%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99%或99.9%一致的胺基酸序列組成。As used herein, "protein" or "polypeptide" refers to a polymer of amino acid residues. Proteins are suitable for naturally occurring amino acid polymers, as well as amino acid polymers suitable for use in which one or more amino acid residues are artificial chemical mimetics of the corresponding naturally occurring amino acids, and non-naturally occurring amino acid polymers. Amino acid polymers. Variants of the proteins, peptides and polypeptides of the present disclosure are also encompassed. In certain embodiments, variant proteins, peptides and polypeptides comprise or consist of at least 70%, 75%, 80%, 85%, 90% of the amino acid sequence of a defined or reference amino acid sequence described herein , 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 99.9% identical amino acid sequence composition.
「核酸分子」或「聚核苷酸」或「聚核酸」係指包括由天然次單位(例如,嘌呤或嘧啶鹼基)或非天然次單位(例如,𠰌啉環)組成之經共價連接的核苷酸的聚合化合物。嘌呤鹼基包括腺嘌呤、鳥嘌呤、次黃嘌呤及黃嘌呤,且嘧啶鹼基包括尿嘧啶、胸(腺)嘧啶及胞嘧啶。核酸分子包括聚核糖核酸(RNA),其包括mRNA、微小RNA、siRNA、病毒基因體RNA及合成RNA;及聚脫氧核糖核苷酸(DNA),其包括cDNA、基因體DNA及合成DNA;其中之任一者可為單股或雙股。若為單股,則核酸分子可為編碼股或非編碼(反義)股。編碼胺基酸序列之核酸分子包括編碼相同胺基酸序列之所有核苷酸序列。核苷酸序列之一些型式亦可包括內含子,其達到經由共轉錄或轉錄後機制移除內含子的程度。換言之,由於遺傳密碼之冗餘或簡倂或藉由剪接,不同核苷酸序列可編碼相同胺基酸序列。A "nucleic acid molecule" or "polynucleotide" or "polynucleic acid" refers to a covalently linked subunit consisting of natural subunits (eg, purine or pyrimidine bases) or non-natural subunits (eg, pyridine rings) nucleotide polymer compounds. Purine bases include adenine, guanine, hypoxanthine, and xanthine, and pyrimidine bases include uracil, thymine, and cytosine. Nucleic acid molecules include polyribonucleic acid (RNA), which includes mRNA, microRNA, siRNA, viral genome RNA, and synthetic RNA; and polydeoxyribonucleotides (DNA), which includes cDNA, genome DNA, and synthetic DNA; wherein Either one can be single or double. If single-stranded, the nucleic acid molecule can be a coding strand or a non-coding (antisense) strand. Nucleic acid molecules encoding amino acid sequences include all nucleotide sequences encoding the same amino acid sequence. Some versions of nucleotide sequences may also include introns, to the extent that introns are removed by co-transcriptional or post-transcriptional mechanisms. In other words, different nucleotide sequences can encode the same amino acid sequence due to redundancy or simplicity of the genetic code or by splicing.
亦涵蓋本揭露內容之核酸分子的變異體。變異體核酸分子為與本文所述之經定義或參考聚核苷酸的核酸分子至少70%、75%、80%、85%、90%,且較佳95%、96%、97%、98%、99%或99.9%一致,或在約65-68℃下在0.015M氯化鈉、0.0015M檸檬酸鈉或在約42℃下0.015M氯化鈉、0.0015M檸檬酸鈉及50%羧醯胺的嚴格雜交條件下與聚核苷酸雜交。核酸分子變異體保留編碼具有本文所述之官能性之其結合域,諸如結合目標分子的能力。Variants of the nucleic acid molecules of the present disclosure are also encompassed. A variant nucleic acid molecule is at least 70%, 75%, 80%, 85%, 90%, and preferably 95%, 96%, 97%, 98%, of a nucleic acid molecule of a defined or reference polynucleotide described herein %, 99% or 99.9% identical, or 0.015M sodium chloride, 0.0015M sodium citrate at about 65-68°C or 0.015M sodium chloride, 0.0015M sodium citrate and 50% carboxylate at about 42°C Hybridizes to polynucleotides under stringent hybridization conditions of amide. Nucleic acid molecule variants retain the ability to encode their binding domains having the functionalities described herein, such as the ability to bind target molecules.
「序列一致性百分比」係指如藉由比較序列確定之在二個或更多個序列之間的關係。確定序列一致性之較佳方法經設計以給出在所比較序列之間的最大匹配。舉例而言,出於最佳比較目的來比對序列(例如,可在第一及第二胺基酸或核酸序列中的一者或二者中引入間隔以用於最佳比對)。此外,出於比較目的可忽略非同源序列。除非另外指明,否則根據參考序列之長度計算本文所提及之序列一致性百分比。用以確定序列一致性及相似性之方法可見於公開可用的電腦程式中。序列比對及百分比一致性計算可使用BLAST程式(例如,BLAST 2.0、BLASTP、BLASTN或BLASTX)進行。用於BLAST程式中之數學算法可見於Altschul等人, Nucleic Acids Res. 25:3389-3402, 1997。在本揭露內容之上下文內,將理解,當序列分析軟體用於分析時,分析結果係基於所參考之程式的「預設值」。「預設值」意謂最初在首次初始化時使用軟體加載之任何值或參數集。"Percent sequence identity" refers to the relationship between two or more sequences as determined by comparing the sequences. Preferred methods for determining sequence identity are designed to give the greatest match between the sequences being compared. For example, sequences are aligned for optimal comparison purposes (eg, a spacer can be introduced in one or both of the first and second amino acid or nucleic acid sequences for optimal alignment). In addition, non-homologous sequences can be ignored for comparison purposes. Unless otherwise indicated, the percent sequence identity referred to herein is calculated based on the length of the reference sequence. Methods for determining sequence identity and similarity can be found in publicly available computer programs. Sequence alignments and percent identity calculations can be performed using BLAST programs (eg, BLAST 2.0, BLASTP, BLASTN, or BLASTX). Mathematical algorithms used in the BLAST program can be found in Altschul et al., Nucleic Acids Res. 25:3389-3402, 1997. Within the context of this disclosure, it will be understood that when sequence analysis software is used for analysis, the analysis results are based on "defaults" of the referenced program. "Default" means any value or parameter set initially loaded by the software on first initialization.
術語「經分離」意謂自其初始環境(例如若其為天然存在的,則為天然環境)中移除該物質。舉例而言,存在於活動物中之天然存在之核酸或多肽為未經分離的,但與天然系統中之一些或所有共存物質分離的相同核酸或多肽為經分離的。此類核酸可為載體之一部分及/或此類核酸或多肽可為組成物(例如細胞溶解物)之一部分,且仍經分離,因為此類載體或組成物不為核酸或多肽之天然環境的一部分。The term "isolated" means that the material is removed from its original environment (eg, the natural environment if it is naturally occurring). For example, a naturally-occurring nucleic acid or polypeptide present in a living animal is not isolated, but the same nucleic acid or polypeptide is isolated from some or all coexisting materials in the natural system. Such nucleic acid may be part of a vector and/or such nucleic acid or polypeptide may be part of a composition (eg, cell lysate) and still be isolated because such vector or composition is not part of the nucleic acid or polypeptide's natural environment. part.
術語「基因」意謂涉及產生多肽鏈之DNA或RNA片段;在某些情況下,其包括在編碼區之前及之後的區域(例如,5'非轉譯區(UTR)及3' UTR),以及個別編碼片段(外顯子)之間的介入序列(內含子)。The term "gene" means a DNA or RNA segment involved in producing a polypeptide chain; in some cases, it includes regions preceding and following the coding region (eg, the 5' untranslated region (UTR) and the 3' UTR), and Intervening sequences (introns) between individual coding segments (exons).
「功能變異體」係指在結構上類似或在結構上實質上類似於本揭露內容之親體或參考化合物,但在組成(例如,一個鹼基、原子或官能基不同、經添加或移除)方面略微不同的多肽或聚核苷酸,使得該多肽或經編碼多肽能夠以至少50%效率,較佳地親體多肽之活性的至少55%、60%、70%、75%、80%、85%、90%、95%、96%、97%、98%、99%、99.9%或100%位準,進行親體多肽之至少一個功能。換言之,當功能變異體與親體或參考多肽相比在所選分析中,諸如用於量測結合親和力之分析(例如,量測締合(Ka)或解離(KD )常數之Biacore®或四聚體染色),展現出效能減小不超過50%時,本揭露內容之多肽或經編碼多肽的功能變異體具有「類似結合」、「類似親和力」或「類似活性」。"Functional variant" refers to a parent or reference compound that is structurally or substantially structurally similar to the disclosure, but differs in composition (eg, a base, atom, or functional group is different, added or removed) Polypeptides or polynucleotides that differ slightly in aspect such that the polypeptide or encoded polypeptide is capable of at least 50% efficiency, preferably at least 55%, 60%, 70%, 75%, 80%, 85%, of the activity of the parent polypeptide %, 90%, 95%, 96%, 97%, 98%, 99%, 99.9% or 100% level, perform at least one function of the parent polypeptide. In other words, when a functional variant is compared to a parent or reference polypeptide in a selected assay, such as an assay used to measure binding affinity (eg, Biacore® or tetramers that measure association (Ka) or dissociation (K D ) constants A polypeptide of the present disclosure or a functional variant of an encoded polypeptide has "similar binding", "similar affinity" or "similar activity" when it exhibits no more than 50% reduction in potency.
如本文所用,「功能部分」或「功能片段」係指包含僅親體或參考化合物之域、部分或片段的多肽或聚核苷酸,且多肽或經編碼多肽保持與親體或參考化合物之域、部分或片段相關之至少50%活性,較佳地為至少親體多肽之活性的55%、60%、70%、75%、80%、85%、90%、95%、96%、97%、98%、99%、99.9%或100%位準,或提供生物效益(例如,效應功能)。當功能部分或片段與親體或參考多肽相比,展現出效能減小不超過50%時(關於親和力,與親體或參考相比較佳不超過20%或10%,或不超過對數差異),本揭露內容之多肽或經編碼多肽的「功能部分」或「功能片段」具有「類似結合」或「類似活性」。As used herein, a "functional portion" or "functional fragment" refers to a polypeptide or polynucleotide comprising only the domain, portion, or fragment of the parent or reference compound, and the polypeptide or encoded polypeptide retains the domain, portion, or fragment of the parent or reference compound. At least 50% of the activity relative to the part or fragment, preferably at least 55%, 60%, 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, of the activity of the parent polypeptide, 98%, 99%, 99.9% or 100% level, or provide biological benefit (eg, effector function). When the functional portion or fragment exhibits no more than a 50% reduction in potency compared to the parent or reference polypeptide (with respect to affinity, preferably no more than 20% or 10% compared to the parent or reference, or no more than a log difference), the present A "functional portion" or "functional fragment" of a polypeptide or encoded polypeptide of the disclosure has "similar binding" or "similar activity."
如本文所用,術語「經工程化」、「重組」或「非天然」係指包括至少一個基因改變或藉由引入外源性或異源性核酸分子而經修飾之生物體、微生物、細胞、核酸分子或載體,其中此類改變或修飾藉由基因工程化(亦即,人工干預)來引入。基因改變包括例如引入編碼功能性RNA、蛋白質、融合蛋白質或酶類之可表現的核酸分子的修飾,或其他核酸分子添加、刪除、取代或細胞之基因物質的其他功能性破壞。額外修飾包括例如非編碼調節區,其中修飾改變聚核苷酸、基因或操縱子之表現。As used herein, the terms "engineered", "recombinant" or "non-natural" refer to an organism, microorganism, cell, Nucleic acid molecules or vectors in which such changes or modifications are introduced by genetic engineering (ie, human intervention). Genetic alterations include modifications such as the introduction of expressible nucleic acid molecules encoding functional RNAs, proteins, fusion proteins or enzymes, or additions, deletions, substitutions of other nucleic acid molecules, or other functional disruption of the genetic material of a cell. Additional modifications include, for example, non-coding regulatory regions, wherein the modification alters the expression of the polynucleotide, gene or operon.
如本文所用,「異源性」或「非內源性」或「外源性」係指並非宿主細胞或個體原生的任何基因、蛋白質、化合物、核酸分子或活性,或已被改變的宿主細胞或個體原生的任何基因、蛋白質、化合物、核酸分子或活性。異源性、非內源性或外源性包括已突變或以其他方式改變使得結構、活性或二者在原生與改變的基因、蛋白質、化合物或核酸分子之間不同的基因、蛋白質、化合物或核酸分子。在某些實施例中,異源性、非內源性或外源性基因、蛋白質或核酸分子(例如,受體、配位體等)可能不對宿主細胞或個體為內源性的,但實際上,編碼此類基因、蛋白質或核酸分子之核酸可藉由共軛、轉型、轉染、電穿孔或其類似方式添加至宿主細胞,其中經添加之核酸分子可整合至宿主細胞基因體中或可以染色體外基因物質之形式存在(例如,作為質體或其他自我複製載體)。術語「同源性」或「同源物」係指見於或衍生自宿主細胞、物種或菌株之基因、蛋白質、化合物、核酸分子或活性。舉例而言,異源性或外源性聚核苷酸或編碼多肽之基因可與原生聚核苷酸或基因同源,且對同源性多肽或活性編碼,但聚核苷酸或多肽可具有改變的結構、序列、表現位準或其任何組合。非內源性聚核苷酸或基因以及經編碼多肽或活性可來自相同物種、不同物種或其組合。As used herein, "heterologous" or "non-endogenous" or "exogenous" refers to any gene, protein, compound, nucleic acid molecule or activity that is not native to the host cell or individual, or that has been altered by the host cell Or any gene, protein, compound, nucleic acid molecule or activity native to the individual. Heterologous, non-endogenous, or exogenous includes genes, proteins, compounds, or nucleic acid molecules that have been mutated or otherwise altered such that structure, activity, or both differ between the native and altered genes, proteins, compounds, or nucleic acid molecules. Nucleic acid molecules. In certain embodiments, a heterologous, non-endogenous, or exogenous gene, protein, or nucleic acid molecule (eg, receptor, ligand, etc.) may not be endogenous to the host cell or individual, but the actual Above, nucleic acids encoding such genes, proteins or nucleic acid molecules can be added to a host cell by conjugation, transformation, transfection, electroporation or the like, wherein the added nucleic acid molecule can be integrated into the host cell genome or It may exist in the form of extrachromosomal genetic material (eg, as a plastid or other self-replicating vector). The term "homology" or "homolog" refers to a gene, protein, compound, nucleic acid molecule or activity found in or derived from a host cell, species or strain. For example, a heterologous or exogenous polynucleotide or gene encoding a polypeptide can be homologous to the native polynucleotide or gene and encode a homologous polypeptide or activity, but the polynucleotide or polypeptide can be With altered structure, sequence, level of expression, or any combination thereof. The non-endogenous polynucleotide or gene and the encoded polypeptide or activity can be from the same species, different species, or a combination thereof.
在某些實施例中,若其已改變或突變,則宿主細胞原生之核酸分子或其部分將視為對宿主細胞為異源的,或若其已經異源表現控制序列改變或已經通常不與宿主細胞原生之核酸分子相關的內源性表現控制序列改變,則宿主細胞原生之核酸分子可視為異源的。另外,術語「異源性」可指與宿主細胞不同、改變或不為內源性的生物活性。如本文所述,超過一個異源核酸分子可作為單獨核酸分子、作為多個單獨受控基因、作為多順反子核酸分子、作為編碼融合蛋白質之單核酸分子或其任何組合引入至宿主細胞中。In certain embodiments, a nucleic acid molecule or portion thereof native to the host cell will be considered heterologous to the host cell if it has been altered or mutated, or if it has heterologous expression control sequences altered or has generally not been associated with A nucleic acid molecule native to the host cell may be considered to be heterologous by altering the endogenous expression control sequences associated with the nucleic acid molecule native to the host cell. Additionally, the term "heterologous" can refer to a biological activity that is different, altered, or not endogenous to the host cell. As described herein, more than one heterologous nucleic acid molecule can be introduced into a host cell as a single nucleic acid molecule, as multiple individually controlled genes, as a polycistronic nucleic acid molecule, as a single nucleic acid molecule encoding a fusion protein, or any combination thereof .
如本文所用,術語「內源性」或「原生」係指通常存在於宿主細胞或個體中之聚核苷酸、基因、蛋白質、化合物、分子或活性。As used herein, the term "endogenous" or "native" refers to a polynucleotide, gene, protein, compound, molecule or activity that is normally present in a host cell or individual.
如本文所用之術語「表現」係指基於核酸分子,諸如基因之編碼序列產生多肽之方法。方法可包括轉錄、轉錄後控制、轉錄後修飾、轉譯、轉譯後控制、轉譯後修飾,或其任何組合。經表現核酸分子通常可操作地連接至表現控制序列(例如,啟動子)。The term "expression" as used herein refers to a method of producing a polypeptide based on the coding sequence of a nucleic acid molecule, such as a gene. The method can include transcription, post-transcriptional control, post-transcriptional modification, translation, post-translational control, post-translational modification, or any combination thereof. The expressed nucleic acid molecule is typically operably linked to an expression control sequence (eg, a promoter).
術語「可操作地連接」係指單一核酸片段上之二個或更多個核酸分子結合,使得一者之功能受另一者影響。舉例而言,在啟動子能夠影響編碼序列之表現時,該啟動子可操作地與該編碼序列連接(亦即編碼序列在該啟動子之轉錄控制下)。「不連接」意謂相關基因要素彼此不緊密相關,且一者之功能不影響另一者。The term "operably linked" refers to the association of two or more nucleic acid molecules on a single nucleic acid fragment such that the function of one is affected by the other. For example, a promoter is operably linked to a coding sequence (ie, the coding sequence is under the transcriptional control of the promoter) when the promoter is capable of affecting the performance of the coding sequence. "Disconnected" means that the related genetic elements are not closely related to each other and that the function of one does not affect the other.
如本文所述,超過一個異源核酸分子可作為單獨核酸分子、作為多個單獨受控基因、作為多順反子核酸分子、作為編碼融合蛋白質(例如,抗體之重鏈)之單核酸分子或其任何組合引入至宿主細胞中。當二個或更多個異源核酸分子引入至宿主細胞中時,應理解,二個或更多個異源核酸分子可作為在單獨載體上之單核酸分子(例如,在單一載體上)引入,在單個位點或多個位點處整合至宿主染色體中,或其任何組合。所提及之異源核酸分子或蛋白質活性的數目係指編碼核酸分子之數目或蛋白質活性之數目,而非引入至宿主細胞中之單獨核酸分子之數目。As described herein, more than one heterologous nucleic acid molecule can be used as a single nucleic acid molecule, as multiple individually controlled genes, as a polycistronic nucleic acid molecule, as a single nucleic acid molecule encoding a fusion protein (eg, the heavy chain of an antibody), or Any combination thereof is introduced into the host cell. When two or more heterologous nucleic acid molecules are introduced into a host cell, it is understood that the two or more heterologous nucleic acid molecules can be introduced as a single nucleic acid molecule on separate vectors (eg, on a single vector) , integrated into the host chromosome at a single site or multiple sites, or any combination thereof. References to the number of heterologous nucleic acid molecules or protein activities refer to the number of encoding nucleic acid molecules or protein activities, not the number of individual nucleic acid molecules introduced into the host cell.
術語「構築體」係指含有重組核酸分子(或當上下文清楚地指示時,本揭露內容之融合蛋白質)之任何聚核苷酸。(聚核苷酸)構築體可存在於載體(例如,細菌載體、病毒載體)中,或可整合至基因體中。「載體」為能夠輸送另一核酸分子之核酸分子。載體可為例如質體、黏質體、病毒、RNA載體或線性或環狀DNA或RNA分子,其可包括染色體、非染色體、半合成或合成核酸分子。本揭露內容之載體亦包括轉位子系統(例如,Sleeping Beauty,參見例如,Geurts等人, Mol. Ther. 8:108, 2003: Mátés等人, Nat. Genet. 41:753, 2009)。例示性載體為能夠自主複製(附加型載體)、能夠將聚核苷酸遞送至細胞基因體(例如,病毒載體)或能夠表現其所連接之核酸分子(表現載體)的載體。The term "construct" refers to any polynucleotide comprising a recombinant nucleic acid molecule (or, when the context clearly dictates, a fusion protein of the present disclosure). The (polynucleotide) construct can be present in a vector (eg, bacterial vector, viral vector), or can be integrated into a gene body. A "vector" is a nucleic acid molecule capable of transporting another nucleic acid molecule. A vector can be, for example, a plastid, a cosmid, a virus, an RNA vector, or a linear or circular DNA or RNA molecule, which can include chromosomal, non-chromosomal, semi-synthetic or synthetic nucleic acid molecules. Vectors of the present disclosure also include translocation subsystems (eg, Sleeping Beauty, see eg, Geurts et al., Mol. Ther. 8:108, 2003: Mátés et al., Nat. Genet. 41:753, 2009). Exemplary vectors are those capable of autonomous replication (episomal vectors), capable of delivering polynucleotides to cellular genomes (eg, viral vectors), or capable of expressing the nucleic acid molecules to which they are linked (expression vectors).
如本文所用,「表現載體」或「載體」係指含有可操作地連接至適合之控制序列的核酸分子的DNA構築體,該控制序列能夠實現適合之宿主中核酸分子之表現。此類控制序列包括實現轉錄之啟動子、控制此類轉錄之任擇的操縱序列、編碼適合之mRNA核糖體結合位點之序列及控制轉錄及轉譯終止之序列。載體可為質體、噬菌體粒子、病毒或僅潛在的基因體插入。一旦轉型至適合之宿主中,載體可獨立於宿主基因體複製及起作用,或可在某些情況下整合至基因體自身中,或將載體中所含之聚核苷酸遞送至不具有載體序列之基因體中。在本發明書中,「質體」、「表現質體」、「病毒」及「載體」通常可互換地使用。As used herein, "expression vector" or "vector" refers to a DNA construct containing a nucleic acid molecule operably linked to suitable control sequences that enable expression of the nucleic acid molecule in a suitable host. Such control sequences include promoters to effect transcription, optional operator sequences to control such transcription, sequences encoding suitable mRNA ribosomal binding sites, and sequences to control the termination of transcription and translation. The vector can be a plastid, a phage particle, a virus, or only a potential gene body insertion. Once transformed into a suitable host, the vector can replicate and function independently of the host genome, or can in some cases integrate into the genome itself, or deliver the polynucleotides contained in the vector to those without the vector sequence in the genome. In the present specification, "plastid", "expression plasmid", "virus" and "vector" are often used interchangeably.
在將核酸分子插入至細胞中之上下文中,術語「引入」意謂「轉染」、「轉型」或「轉導」,且包括提及到將核酸分子併入至真核或原核細胞中,其中該核酸分子可併入至細胞之基因體(例如,染色體、質體、色素體或粒線體DNA)中,轉化成自主複製子或暫時表現(例如,經傳染mRNA)。In the context of inserting a nucleic acid molecule into a cell, the term "introduced" means "transfection", "transformation" or "transduction" and includes references to the incorporation of a nucleic acid molecule into a eukaryotic or prokaryotic cell, Wherein the nucleic acid molecule can be incorporated into the genome of the cell (eg, chromosomal, plastid, chromosomal or mitochondrial DNA), converted into an autonomous replicon or transiently expressed (eg, infected mRNA).
在某些實施例中,本揭露內容之聚核苷酸可以可操作方式連接至載體之某一要素。舉例而言,實現所接合之編碼序列的表現及加工所需的聚核苷酸序列可以可操作方式連接。表現控制序列可包括適當轉錄起始、終止、啟動子及強化子序列;有效RNA加工訊號,諸如剪接及聚腺苷酸化訊號;使細胞質mRNA穩定之序列;增強轉譯效率之序列(亦即克紮克共有序列(Kozak consensus sequence));增強蛋白質穩定性之序列;及增強蛋白質分泌之可能的序列。若表現控制序列與感興趣的基因及以反式或在一定距離下作用以控制感興趣的基因的表現控制序列鄰接,則表現控制序列可以可操作方式連接。In certain embodiments, the polynucleotides of the present disclosure may be operably linked to an element of a vector. For example, the polynucleotide sequences necessary to effect performance and processing of the joined coding sequences can be operably linked. Expression control sequences may include appropriate transcription initiation, termination, promoter and enhancer sequences; efficient RNA processing signals, such as splicing and polyadenylation signals; sequences to stabilize cytoplasmic mRNA; Kozak consensus sequence); sequences that enhance protein stability; and possible sequences that enhance protein secretion. An expression control sequence can be operably linked if it is contiguous with the gene of interest and an expression control sequence that acts in trans or at a distance to control the gene of interest.
在某些實施例中,載體包含質體載體或病毒載體(例如,慢病毒載體或γ-反轉錄病毒載體)。病毒載體包括反轉錄病毒;腺病毒;小病毒(例如腺相關病毒);冠狀病毒;負股RNA病毒,諸如正黏病毒(例如流感病毒)、棒狀病毒(例如狂犬病及水泡性口炎病毒)、副黏病毒(例如麻疹及仙台);正股RNA病毒,諸如小RNA病毒及α病毒;及雙股DNA病毒,包括腺病毒、疱疹病毒(例如1型及2型單純疱疹病毒、埃-巴二氏病毒(Epstein-Barr virus)、細胞巨大病毒)及痘病毒(例如牛痘、禽痘及金絲雀痘)。其他病毒包括例如諾沃克病毒(Norwalk virus)、披衣病毒、黃病毒、呼腸孤病毒、乳多泡病毒、嗜肝DNA病毒及肝炎病毒。反轉錄病毒之實例包括:鳥類白血病性肉瘤性病毒、哺乳動物C型病毒、B型病毒、D型病毒、HTLV-BLV群、慢病毒、泡沫病毒(Coffin, J. M., Retroviridae: The viruses and their replication, Fundamental Virology,第三版, B.N.Fields等人編, Lippincott-Raven Publishers, Philadelphia, 1996)。In certain embodiments, the vector comprises a plastid vector or a viral vector (eg, a lentiviral vector or a gamma-retroviral vector). Viral vectors include retroviruses; adenoviruses; small viruses (eg, adeno-associated viruses); coronaviruses; , Paramyxoviruses (eg, measles and Sendai); positive-stranded RNA viruses, such as picornaviruses and alphaviruses; and double-stranded DNA viruses, including adenoviruses, herpesviruses (eg,
「反轉錄病毒」為具有RNA基因體之病毒,該RNA基因體使用逆轉錄酶反轉錄至DNA中,隨後將反轉錄DNA併入至宿主細胞基因體中。「γ逆轉錄病毒屬」係指逆轉錄病毒科之屬。γ反轉錄病毒之實例包括小鼠幹細胞病毒、鼠類白血病病毒、貓白血病病毒、貓肉瘤病毒及禽類網狀內皮細胞增生病毒。A "retrovirus" is a virus that has an RNA genome that is reverse transcribed into DNA using reverse transcriptase, which subsequently incorporates the reverse transcribed DNA into the host cell genome. "GammaRetrovirus" means a genus of the Retroviridae family. Examples of gamma retroviruses include mouse stem cell virus, murine leukemia virus, feline leukemia virus, feline sarcoma virus, and avian reticuloendothelial proliferation virus.
「慢病毒載體」包括用於基因遞送之HIV類慢病毒載體,其可為整合或未整合的,具有相對較大封裝能力,且可轉導一系列不同細胞類型。慢病毒載體通常在將三個(封裝、包膜及轉移)或更多個質體短暫轉染至生產細胞中之後產生。與HIV相同,慢病毒載體經由病毒表面醣蛋白與細胞表面上之受體的相互作用而進入標靶細胞。在進入後,病毒RNA進行反轉錄,此係由病毒反轉錄酶複合體所介導。反轉錄之產物為雙股線性病毒DNA,其為整合至感染細胞之DNA中病毒之受質。"Lentiviral vectors" include HIV-like lentiviral vectors for gene delivery, which can be integrated or unintegrated, have relatively large encapsulation capabilities, and can transduce a range of different cell types. Lentiviral vectors are typically produced following transient transfection of three (encapsulation, envelope and transfer) or more plastids into producer cells. Like HIV, lentiviral vectors enter target cells through the interaction of viral surface glycoproteins with receptors on the cell surface. After entry, viral RNA is reverse transcribed, which is mediated by the viral reverse transcriptase complex. The product of reverse transcription is double-stranded linear viral DNA, which is the substrate for the virus that integrates into the DNA of infected cells.
在某些實施例中,病毒載體可為γ逆轉錄病毒屬,例如莫洛尼鼠類白血病病毒(MLV)衍生之載體。在其他實施例中,病毒載體可為更複雜反轉錄病毒衍生之載體,例如慢病毒衍生之載體。HIV-1衍生之載體屬於此類別。其他實例包括衍生自HIV-2、FIV、馬感染性貧血病毒、SIV及馬迪-維斯納病毒(Maedi-Visna virus) (綿羊慢病毒)之慢病毒載體。使用反轉錄病毒及慢病毒病毒載體及封裝細胞以便用含有轉殖基因之病毒粒子轉導哺乳動物宿主細胞的方法為此項技術中已知的且先前已描述於例如以下中:美國專利第8,119,772號;Walchli等人, PLoS One 6:327930, 2011;Zhao等人, J. Immunol. 174:4415, 2005;Engels等人, Hum. Gene Ther. 14:1155, 2003;Frecha等人, Mol. Ther. 18:1748, 2010;及Verhoeyen等人, Methods Mol. Biol. 506:97, 2009。反轉錄病毒及慢病毒載體構築體及表現系統亦為可商購的。其他病毒載體亦可用於包括DNA病毒載體之聚核苷酸遞送,該等DNA病毒載體包括例如腺病毒類載體及腺相關病毒(AAV)類載體;衍生自單純疱疹病毒(HSV)之載體,包括擴增子載體、複製缺陷型HSV及減毒性HSV (Krisky等人, Gene Ther. 5:1517, 1998)。In certain embodiments, the viral vector may be a gamma retrovirus, such as a Moloney murine leukemia virus (MLV) derived vector. In other embodiments, the viral vector can be a more complex retrovirus-derived vector, such as a lentivirus-derived vector. HIV-1 derived vectors fall into this category. Other examples include lentiviral vectors derived from HIV-2, FIV, Equine Infectious Anemia Virus, SIV, and Maedi-Visna virus (sheep lentivirus). Methods of using retroviral and lentiviral viral vectors and encapsulating cells for transduction of mammalian host cells with virions containing transgenic genes are known in the art and have been previously described, for example, in US Pat. No. 8,119,772 No.; Walchli et al, PLoS One 6:327930, 2011; Zhao et al, J. Immunol. 174:4415, 2005; Engels et al, Hum. Gene Ther. 14:1155, 2003; Frecha et al, Mol. Ther 18:1748, 2010; and Verhoeyen et al., Methods Mol. Biol. 506:97, 2009. Retroviral and lentiviral vector constructs and expression systems are also commercially available. Other viral vectors may also be used for polynucleotide delivery including DNA viral vectors, including, for example, adenovirus-based vectors and adeno-associated virus (AAV)-based vectors; vectors derived from herpes simplex virus (HSV), including Amplicon vectors, replication deficient HSV and attenuated HSV (Krisky et al., Gene Ther. 5:1517, 1998).
可用於本揭露內容之組成物及方法的其他載體包括衍生自桿狀病毒及α-病毒之載體。(Jolly, D J. 1999. Emerging Viral Vectors.第209-40頁in Friedmann T.編輯. The Development of Human Gene Therapy. New York: Cold Spring Harbor Lab),或質體載體(諸如睡美人或其他轉位子載體)。Other vectors that can be used in the compositions and methods of the present disclosure include vectors derived from baculoviruses and alpha-viruses. (Jolly, D J. 1999. Emerging Viral Vectors. pp. 209-40 in Friedmann T. ed. The Development of Human Gene Therapy. New York: Cold Spring Harbor Lab), or plastid vectors (such as Sleeping Beauty or other transgenic seat carrier).
當病毒載體基因體包含待在宿主細胞中表現之多個聚核苷酸作為單獨轉錄物時,病毒載體亦可包含在二個(或更多個)轉錄物之間允許雙順反子或多順反子表現的額外序列。用於病毒載體之此類序列的實例包括內部核糖體入口位點(IRES)、弗林裂解位點、病毒2A肽或其任何組合。When the viral vector genome contains multiple polynucleotides to be expressed in the host cell as separate transcripts, the viral vector may also contain dicistronic or polynucleotides between the two (or more) transcripts. Additional sequences expressed by cistrons. Examples of such sequences for use in viral vectors include the internal ribosome entry site (IRES), the Flynn cleavage site, the viral 2A peptide, or any combination thereof.
本文中進一步描述質體載體,其包括編碼基於DNA之抗體或抗原結合片段的質體載體,用於向個體直接投予。Further described herein are plastid vectors, including plastid vectors encoding DNA-based antibodies or antigen-binding fragments, for direct administration to an individual.
如本文所用,術語「宿主」係指靶向用異源核酸分子基因修飾以產生感興趣的多肽(例如,本揭露內容之抗體)的細胞或微生物。As used herein, the term "host" refers to a cell or microorganism targeted for genetic modification with a heterologous nucleic acid molecule to produce a polypeptide of interest (eg, an antibody of the present disclosure).
宿主細胞可包括可接受載體或併入核酸或表現蛋白質之任何單獨的細胞或細胞培養物。該術語亦涵蓋宿主細胞之後代,不論基因或表現型上相同或不同。適合之宿主細胞可取決於載體,且可包括哺乳動物細胞、動物細胞、人類細胞、猿猴細胞、昆蟲細胞、酵母細胞及細菌細胞。此等細胞可藉由使用病毒載體、經由磷酸鈣沈澱之轉型作用、DEAE-聚葡萄糖、電穿孔、顯微注射或其他方法來誘導以併入載體或其他物質。參見例如Sambrook等人, Molecular Cloning: A Laboratory Manual 2d編輯. (Cold Spring Harbor Laboratory, 1989)。A host cell can include an acceptable vector or any individual cell or cell culture that incorporates a nucleic acid or expresses a protein. The term also encompasses host cell progeny, whether genetically or phenotypically identical or different. Suitable host cells may depend on the vector, and may include mammalian cells, animal cells, human cells, simian cells, insect cells, yeast cells, and bacterial cells. These cells can be induced to incorporate vectors or other substances by using viral vectors, transformation via calcium phosphate precipitation, DEAE-polydextrose, electroporation, microinjection, or other methods. See, eg, Sambrook et al., Molecular Cloning: A Laboratory Manual 2d ed. (Cold Spring Harbor Laboratory, 1989).
在SARS-CoV-2感染之情形下,「宿主」係指感染SARS-CoV-2之細胞或個體。In the context of SARS-CoV-2 infection, "host" refers to a cell or individual infected with SARS-CoV-2.
如本文所用,「抗原」或「Ag」係指引起免疫反應之免疫原性分子。此免疫反應可涉及抗體產生、特異性免疫學上感受態細胞之活化、補體活化、抗體依賴性細胞毒性或其任何組合。抗原(免疫原性分子)可為例如肽、醣肽、多肽、醣多肽、聚核苷酸、多醣、脂質或其類似物。容易地顯而易見,抗原可由生物樣品合成、以重組方式產生或自其衍生。可含有一或多個抗原之例示性生物樣品包括組織樣品、糞便樣品、細胞、生物流體或其組合。抗原可藉由已經修飾或遺傳工程化以表現抗原之細胞產生。抗原亦可存在於SARS-CoV-2 (例如,表面醣蛋白或其部分)中,諸如存在於病毒粒子中,或在由SARS-CoV-2感染之細胞表面上表現或呈遞。As used herein, "antigen" or "Ag" refers to an immunogenic molecule that elicits an immune response. This immune response may involve antibody production, activation of specific immunologically competent cells, complement activation, antibody-dependent cytotoxicity, or any combination thereof. Antigens (immunogenic molecules) can be, for example, peptides, glycopeptides, polypeptides, glycopolypeptides, polynucleotides, polysaccharides, lipids, or analogs thereof. It is readily apparent that antigens can be synthesized, recombinantly produced, or derived from biological samples. Exemplary biological samples that may contain one or more antigens include tissue samples, stool samples, cells, biological fluids, or combinations thereof. Antigens can be produced by cells that have been modified or genetically engineered to express the antigen. Antigens can also be present in SARS-CoV-2 (eg, surface glycoproteins or portions thereof), such as in virions, or expressed or presented on the surface of cells infected by SARS-CoV-2.
術語「表位」或「抗原表位」包括由諸如免疫球蛋白之同源結合分子或其他結合分子、域或蛋白質識別且特異性結合的任何分子、結構、胺基酸序列或蛋白質決定子。表位決定子通常含有分子,諸如胺基酸或糖側鏈之化學活性表面群組,且可具有特定三維結構特性以及荷質比特性。當抗原為或包含肽或蛋白質時,表位可包括連續胺基酸(例如,線性表位),或可包括來自蛋白質之不同部分或區的因蛋白質摺疊而接近之胺基酸(例如,非連續或構象表位),或與蛋白質摺疊無關的緊密相鄰的非鄰接胺基酸。 抗體、抗原結合片段及組成物 The term "epitope" or "epitope" includes any molecule, structure, amino acid sequence or protein determinant that is recognized and specifically bound by a cognate binding molecule such as an immunoglobulin or other binding molecule, domain or protein. Epitopic determinants typically contain chemically active surface groups of molecules, such as amino acids or sugar side chains, and can have specific three-dimensional structural properties as well as charge-to-mass ratio properties. When the antigen is or comprises a peptide or protein, the epitope may include contiguous amino acids (eg, linear epitopes), or may include amino acids from different parts or regions of the protein that are brought into proximity by protein folding (eg, non-linear epitopes) contiguous or conformational epitopes), or closely adjacent non-contiguous amino acids that are not involved in protein folding. Antibodies, antigen-binding fragments and compositions
在一個態樣中,本揭露內容提供一種經分離抗體或其抗原結合片段,其包含重鏈可變域(VH)及輕鏈可變域(VL)且能夠結合至SARS-CoV-2之表面醣蛋白,該重鏈可變域(VH)包含CDRH1、CDRH2及CDRH3,且該輕鏈可變域(VL)包含CDRL1、CDRL2及CDRL3。在某些實施例中,抗體或抗原結合片段能夠結合至表現於宿主細胞之細胞表面上及/或SARS-CoV-2病毒粒子上之SARS-CoV-2的表面醣蛋白。In one aspect, the present disclosure provides an isolated antibody or antigen-binding fragment thereof comprising a heavy chain variable domain (VH) and a light chain variable domain (VL) and capable of binding to the surface of SARS-CoV-2 A glycoprotein, the heavy chain variable domain (VH) comprises CDRH1, CDRH2 and CDRH3, and the light chain variable domain (VL) comprises CDRL1, CDRL2 and CDRL3. In certain embodiments, the antibody or antigen-binding fragment is capable of binding to a surface glycoprotein of SARS-CoV-2 expressed on the cell surface of a host cell and/or on a SARS-CoV-2 virion.
在某些實施例中,本揭露內容之抗體或抗原結合片段與SARS-CoV-2表面醣蛋白表位或包含該表位之抗原結合或聯合,但不與樣品中之任何其他分子或組分顯著結合或聯合。In certain embodiments, an antibody or antigen-binding fragment of the present disclosure binds or associates with a SARS-CoV-2 surface glycoprotein epitope or an antigen comprising the epitope, but not with any other molecule or component in the sample Significantly combined or combined.
在某些實施例中,本揭露內容之抗體或抗原結合片段與SARS-CoV-2表面醣蛋白表位結合或聯合(例如,結合),且亦可與來自存在於樣品中之另一冠狀病毒(例如,SARS-CoV-1)的表位結合或聯合,但不與樣品中之任何其他分子或組分顯著結合或聯合。換言之,在某些實施例中,本揭露內容之抗體或抗原結合片段與SARS-CoV-2及一或多個額外冠狀病毒交叉反應。In certain embodiments, an antibody or antigen-binding fragment of the present disclosure binds or associates (eg, binds) to a SARS-CoV-2 surface glycoprotein epitope, and may also bind to a source from another coronavirus present in the sample An epitope (eg, SARS-CoV-1) binds or associates, but does not significantly bind or associate with any other molecule or component in the sample. In other words, in certain embodiments, the antibodies or antigen-binding fragments of the present disclosure cross-react with SARS-CoV-2 and one or more additional coronaviruses.
在某些實施例中,本揭露內容之抗體或抗原結合片段特異性結合至SARS-CoV-2表面醣蛋白。如本文所用,「特異性結合」係指抗體或抗原結合片段與抗原之締合或聯合的親和力或Ka (亦即,特定結合相互作用之平衡結合常數,單位為1/M)等於或大於105 M-1 (其等於此締合反應之締合速率[Kon ]與解離速率[Koff ]的比率),但不與樣品中之任何其他分子或組分顯著締合或聯合。或者,親和力可定義為特定結合相互作用之平衡解離常數(KD ),單位為M (例如,10-5 M至10-13 M)。抗體可分類為「高親和力」抗體或「低親和力」抗體。「高親和力」抗體係指Ka 為至少107 M-1 、至少108 M-1 、至少109 M-1 、至少1010 M-1 、至少1011 M-1 、至少1012 M-1 或至少1013 M-1 的彼等抗體。「低親和力」抗體係指Ka 為至多107 M-1 、至多106 M-1 、至多105 M-1 的彼等抗體。或者,親和力可定義為特定結合相互作用之平衡解離常數(KD ),單位為M (例如,10-5 M至10-13 M)。In certain embodiments, the antibodies or antigen-binding fragments of the present disclosure specifically bind to SARS-CoV-2 surface glycoproteins. As used herein, "specific binding" refers to the association or association of an antibody or antigen-binding fragment with an antigen with an affinity or Ka (ie, the equilibrium binding constant for a specific binding interaction, in units of 1/M) equal to or greater than 10 5 M -1 (which is equal to the ratio of the association rate [ Kon ] to the dissociation rate [ Koff ] for this association reaction, but not significantly associated or associated with any other molecule or component in the sample. Alternatively, affinity can be defined as the equilibrium dissociation constant (K D ) for a particular binding interaction in M (eg, 10 -5 M to 10 -13 M). Antibodies can be classified as "high affinity" antibodies or "low affinity" antibodies. "High affinity" antibodies refer to Kas of at least 10 7 M -1 , at least 10 8 M -1 , at least 10 9 M -1 , at least 10 10 M -1 , at least 10 11 M -1 , at least 10 12 M - 1 or at least 10 13 M -1 of those antibodies. "Low affinity" antibodies refer to those antibodies whose Ka is at most 107 M" 1 , at most 106 M" 1 , at most 105 M" 1 . Alternatively, affinity can be defined as the equilibrium dissociation constant (K D ) for a particular binding interaction in M (eg, 10 -5 M to 10 -13 M).
已知用於鑑別結合特定目標之本揭露內容的抗體以及確定結合域或結合蛋白質親和力的多種分析,諸如西方墨點、ELISA (例如,直接、間接或夾心)、分析型超速離心、光譜法及表面電漿子共振(Biacore®)分析(參見例如,Scatchard等人, Ann. N.Y. Acad. Sci. 51:660, 1949;Wilson, Science 295:2103, 2002;Wolff等人, Cancer Res. 53:2560, 1993;及美國專利第5,283,173, 5,468,614號或等效物)。用於評定親和力或表觀親和力或相對親和力之分析為已知的。Various assays are known for identifying antibodies of the present disclosure that bind specific targets and determining binding domain or binding protein affinity, such as Western blot, ELISA (eg, direct, indirect, or sandwich), analytical ultracentrifugation, spectroscopy, and Surface Plasmon Resonance (Biacore®) analysis (see e.g., Scatchard et al, Ann. N.Y. Acad. Sci. 51:660, 1949; Wilson, Science 295:2103, 2002; Wolff et al, Cancer Res. 53:2560 , 1993; and US Pat. Nos. 5,283,173, 5,468,614 or equivalent). Assays for assessing affinity or apparent or relative affinity are known.
在某些實例中,結合可藉由在宿主細胞中以重組方式表現SARS-CoV-2抗原(例如,藉由轉染)及用抗體對(例如,固定的,或固定的及預滲透的)宿主細胞免疫染色,及藉由流式細胞術(例如,使用ZE5細胞分析儀(BioRad®)及FlowJo軟體(TreeStar)分析結合來確定。在一些實施例中,陽性結合可由表現SARS-CoV-2之細胞相對於對照(例如,模擬)細胞之抗體的不同染色來定義。In certain instances, binding can be achieved by recombinantly expressing the SARS-CoV-2 antigen in host cells (eg, by transfection) and using antibody pairs (eg, immobilized, or immobilized and pre-infiltrated) Host cell immunostaining, and determination of binding by flow cytometry (eg, using a ZE5 cell analyzer (BioRad®) and FlowJo software (TreeStar) for binding. In some embodiments, positive binding can be determined by the expression of SARS-CoV-2 Cells are defined by differential staining of the antibody relative to control (eg, mock) cells.
在一些實施例中,本揭露內容之抗體或抗原結合片段結合至SARS-CoV-2 S蛋白質,如使用生物層干涉法所量測。In some embodiments, the antibodies or antigen-binding fragments of the present disclosure bind to the SARS-CoV-2 S protein, as measured using biolayer interferometry.
在某些實施例中,本揭露內容之抗體或抗原結合片段結合至SARS-CoV-2 S蛋白,其中KD 低於約4.5x10-9 M、低於約5x10-9 M、低於約1x10-10 M、低於約5x10-10 M、低於約1x10-11 M、低於約5x10-11 M、低於約1x10-12 M或低於約5x10-12 M。在一些實施例中,本揭露內容之抗體或抗原結合片段結合至SARS-CoV-2 S蛋白RBD,其中KD 低於約4.5x10-9 M、低於約5x10-9 M、低於約1x10-10 M、低於約5x10-10 M、低於約1x10-11 M、低於約5x10-11 M、低於約1x10-12 M或低於約5x10-12 M。In certain embodiments, the antibodies or antigen-binding fragments of the present disclosure bind to the SARS-CoV-2 S protein, wherein the KD is less than about 4.5x10 "9M, less than about 5x10" 9M , less than about 1x10 -10 M, less than about 5x10-10 M, less than about 1x10-11 M, less than about 5x10-11 M, less than about 1x10-12 M, or less than about 5x10-12 M. In some embodiments, the antibodies or antigen-binding fragments of the present disclosure bind to the SARS-CoV-2 S protein RBD, wherein the KD is less than about 4.5x10 "9M, less than about 5x10" 9M , less than about 1x10 -10 M, less than about 5x10-10 M, less than about 1x10-11 M, less than about 5x10-11 M, less than about 1x10-12 M, or less than about 5x10-12 M.
可使用IC50或EC50值描述本發明所揭露之抗體或抗原結合片段的某些特徵。在某些實施例中,IC50為引起所指示之生物或生物化學功能、活性或反應之半最大抑制的組成物(例如,抗體)之濃度。在某些實施例中,EC50為在分析中提供半最大反應之組成物的濃度。在一些實施例中,例如用於描述本發明所揭露之抗體或抗原結合片段中和藉由SARS-CoV-2引起之感染的能力,IC50及EC50可互換地使用。Certain characteristics of the disclosed antibodies or antigen-binding fragments can be described using IC50 or EC50 values. In certain embodiments, the IC50 is the concentration of a composition (eg, an antibody) that causes a half-maximal inhibition of the indicated biological or biochemical function, activity, or response. In certain embodiments, the EC50 is the concentration of a constituent that provides a half-maximal response in an assay. In some embodiments, IC50 and EC50 are used interchangeably, eg, to describe the ability of the disclosed antibodies or antigen-binding fragments to neutralize infection by SARS-CoV-2.
在某些實施例中,本揭露內容之抗體能夠中和藉由SARS-CoV-2引起之感染。如本文所用,「中和抗體」為可中和,亦即防止、抑制、減少、阻礙或干擾病原體在宿主中引發及/或維持感染之能力。術語「中和抗體」及「用以中和之抗體」或「用以中和之抗體」在本文中可互換使用。在本發明所揭露之實施例中之任一者中,抗體或抗原結合片段能夠預防及/或中和活體外感染模型及/或活體內動物感染模型(例如,使用具有SARS-CoV-2之鼻內遞送的敘利亞倉鼠模型)及/或人類中之SARS-CoV-2感染。In certain embodiments, the antibodies of the present disclosure are capable of neutralizing infection caused by SARS-CoV-2. As used herein, a "neutralizing antibody" is one that neutralizes, ie, prevents, inhibits, reduces, hinders or interferes with the ability of a pathogen to initiate and/or maintain infection in a host. The terms "neutralizing antibody" and "antibody for neutralizing" or "antibody for neutralizing" are used interchangeably herein. In any of the embodiments disclosed herein, the antibody or antigen-binding fragment is capable of preventing and/or neutralizing in vitro infection models and/or in vivo animal infection models (eg, using Syrian hamster model for intranasal delivery) and/or SARS-CoV-2 infection in humans.
在一些實施例中,本揭露內容之抗體或抗原結合片段能夠以約16至約20 μg/ml之IC50中和SARS-CoV-2感染或藉由經SARS-CoV-2 S蛋白假模式化之病毒的感染。在一些實施例中,抗體或抗原結合片段能夠以約3至約4 μg/ml之IC50中和SARS-CoV-2感染或經SARS-CoV-2 S蛋白假模式化之病毒。在本發明所揭露之實施例中之任一者中,抗體或抗原結合片段能夠以如表4中所示之IC50、IC80及/或IC90中和SARS-CoV-2感染或經SARS-CoV-2 S蛋白假模式化之病毒。In some embodiments, the antibodies or antigen-binding fragments of the present disclosure are capable of neutralizing SARS-CoV-2 infection with an IC50 of about 16 to about 20 μg/ml or by pseudo-patterning via the SARS-CoV-2 S protein virus infection. In some embodiments, the antibody or antigen-binding fragment is capable of neutralizing SARS-CoV-2 infected or pseudopatterned virus with the SARS-CoV-2 S protein with an IC50 of about 3 to about 4 μg/ml. In any of the embodiments disclosed herein, the antibody or antigen-binding fragment is capable of neutralizing SARS-CoV-2 infection or SARS-CoV-2 infection with IC50, IC80 and/or IC90 as shown in Table 4 2 S-protein pseudo-patterned virus.
在一些實施例中,本揭露內容之抗體或抗原結合片段或包含二個或更多個抗體或抗原結合片段之組成物能夠以約0.8至約0.9 μg/ml之IC50中和SARS-CoV-2感染,或經SARS-CoV-2 S蛋白假模式化之病毒。在一些實施例中,本揭露內容之抗體或抗原結合片段或包含二個或更多個抗體或抗原結合片段之組成物能夠以約0.5至約0.6 μg/ml之IC50中和SARS-CoV-2感染,或經SARS-CoV-2 S蛋白假模式化之病毒。在一些實施例中,本揭露內容之抗體或抗原結合片段或包含二個或更多個抗體或抗原結合片段之組成物能夠以約0.1至約0.2 μg/ml之IC50中和SARS-CoV-2感染,或經SARS-CoV-2假模式化之病毒。In some embodiments, the antibodies or antigen-binding fragments of the present disclosure, or compositions comprising two or more antibodies or antigen-binding fragments, are capable of neutralizing SARS-CoV-2 with an IC50 of about 0.8 to about 0.9 μg/ml infection, or a virus pseudopatterned with the SARS-CoV-2 S protein. In some embodiments, the antibodies or antigen-binding fragments of the present disclosure, or compositions comprising two or more antibodies or antigen-binding fragments, are capable of neutralizing SARS-CoV-2 with an IC50 of about 0.5 to about 0.6 μg/ml infection, or a virus pseudopatterned with the SARS-CoV-2 S protein. In some embodiments, the antibodies or antigen-binding fragments of the present disclosure, or compositions comprising two or more antibodies or antigen-binding fragments, are capable of neutralizing SARS-CoV-2 with an IC50 of about 0.1 to about 0.2 μg/ml infection, or a virus pseudopatterned by SARS-CoV-2.
在某些實施例中,抗體或抗原結合片段(i)識別SARS-CoV-2之ACE2受體結合模體(RBM,SEQ ID NO.:5)中之表位;(ii)能夠阻斷SARS-CoV-2與人類ACE2之間的相互作用(亦即經由結合至SARS-CoV-2而部分或完全阻斷相互作用);(ii)能夠結合至SARS-CoV-2 S蛋白;(iv)識別在SARS-CoV-2之該ACE2 RBM中及在SARS-CoV-1之ACE2 RBM中守恆的表位;(v)針對SARS-CoV-2及SARS-CoV-1交叉反應;(vi)識別未在該ACE2 RBM中在該SARS-CoV-2表面醣蛋白中之表位;或(vii) (i)-(vii)之任何組合。In certain embodiments, the antibody or antigen-binding fragment (i) recognizes an epitope in the ACE2 receptor binding motif (RBM, SEQ ID NO.: 5) of SARS-CoV-2; (ii) is capable of blocking SARS-CoV-2 - Interaction between CoV-2 and human ACE2 (i.e. partial or complete blocking of the interaction via binding to SARS-CoV-2); (ii) capable of binding to SARS-CoV-2 S protein; (iv) Identify epitopes conserved in the ACE2 RBM of SARS-CoV-2 and in the ACE2 RBM of SARS-CoV-1; (v) cross-react against SARS-CoV-2 and SARS-CoV-1; (vi) identify an epitope in the SARS-CoV-2 surface glycoprotein that is not in the ACE2 RBM; or (vii) any combination of (i)-(vii).
除非本文中明確地定義,否則熟習此項抗體技術者理解之術語各自賦予此項技術中獲得之含義。舉例而言,術語「抗體」係指包含藉由二硫鍵互連之至少二個重(H)鏈及二個輕(L)鏈的完整抗體,以及具有或保持結合至由完整抗體所識別之抗原目標分子之能力的完整抗體之任何抗原結合部分或片段,諸如scFv、Fab或Fab'2片段。因此,本文中術語「抗體」係在最廣泛的意義上使用且包括多株及單株抗體,包括完整抗體及其功能性(抗原結合)抗體片段,包括抗原結合片段(Fab)片段、F(ab')2片段、Fab'片段、Fv片段、重組IgG (rIgG)片段、單鏈抗體片段,包括單鏈可變片段(scFv),及單域抗體(例如sdAb、sdFv、奈米抗體)片段。該術語涵蓋免疫球蛋白之經基因工程改造及/或以其他方式修飾之形式,諸如胞內抗體、肽體、嵌合抗體、完全人類抗體、人源化抗體,及異結合抗體、多特異性(例如雙特異性)抗體、雙功能抗體、三功能抗體及四功能抗體、串聯二scFv、串聯三scFv。除非另有說明,否則術語「抗體」應理解為涵蓋其功能性抗體片段。該術語亦涵蓋完整或全長抗體,包括任何種類或亞類的抗體,包括IgG及其子類(IgG1、IgG2、IgG3、IgG4)、IgM、IgE、IgA及IgD。Unless explicitly defined herein, terms as understood by those skilled in the art of antibodies are each given the meaning obtained in the art. For example, the term "antibody" refers to an intact antibody that comprises at least two heavy (H) chains and two light (L) chains interconnected by disulfide bonds, and that has or remains bound to recognition by the intact antibody Any antigen-binding portion or fragment of an intact antibody, such as a scFv, Fab or Fab'2 fragment, that has the ability to target an antigenic molecule. Thus, the term "antibody" is used herein in the broadest sense and includes both polyclonal and monoclonal antibodies, including intact antibodies and functional (antigen-binding) antibody fragments thereof, including antigen-binding fragment (Fab) fragments, F( ab')2 fragments, Fab' fragments, Fv fragments, recombinant IgG (rIgG) fragments, single-chain antibody fragments, including single-chain variable fragments (scFv), and single-domain antibody (eg sdAb, sdFv, Nanobody) fragments . The term encompasses genetically engineered and/or otherwise modified forms of immunoglobulins, such as intrabodies, peptibodies, chimeric antibodies, fully human antibodies, humanized antibodies, and hetero-binding antibodies, multispecific antibodies (eg bispecific) antibodies, diabodies, tri- and tetrabodies, tandem di-scFvs, tandem tri-scFvs. Unless otherwise specified, the term "antibody" is understood to encompass functional antibody fragments thereof. The term also encompasses whole or full-length antibodies, including antibodies of any class or subclass, including IgG and its subclasses (IgGl, IgG2, IgG3, IgG4), IgM, IgE, IgA, and IgD.
術語「VL 」或「VL」及「VH 」或「VH」係指分別來自抗體輕鏈及抗體重鏈之可變結合區。在某些實施例中,VL為卡帕(κ)類(本文中亦為「VK」)。在某些實施例中,VL為拉姆達(λ)類。可變結合區包含稱為「互補決定區」(CDR)及「骨架區」(FR)之分散的定義明確的子區。術語「互補決定區」及「CDR」與「高變區」或「HVR」同義,且係指抗體可變區內之胺基酸序列,其一般而言一同賦予抗原特異性及/或該抗體之結合親和力,其中連續CDR (亦即,CDR1及CDR2,CDR2及CDR3)在一級結構中藉由骨架區彼此分離。在各可變區中存在三個CDR (HCDR1、HCDR2、HCDR3;LCDR1、LCDR2、LCDR3;分別亦稱為CDRH及CDRL)。在某些實施例中,抗體VH包含如下四個FR及三個CDR:FR1-HCDR1-FR2-HCDR2-FR3-HCDR3-FR4;且抗體VL包含如下四個FR及三個CDR:FR1-LCDR1-FR2-LCDR2-FR3-LCDR3-FR4。一般而言,VH及VL經由其對應的CDR共同形成抗原結合位點。The terms " VL " or "VL" and " VH " or "VH" refer to the variable binding regions from antibody light and antibody heavy chains, respectively. In certain embodiments, VL is of the kappa (κ) class (also "VK" herein). In certain embodiments, VL is of the lambda (λ) class. The variable binding regions comprise discrete well-defined subregions called "complementarity determining regions" (CDRs) and "framework regions" (FRs). The terms "complementarity determining regions" and "CDRs" are synonymous with "hypervariable regions" or "HVRs" and refer to amino acid sequences within the variable regions of an antibody that, in general, together confer antigen specificity and/or the antibody The binding affinity is where consecutive CDRs (ie, CDR1 and CDR2, CDR2 and CDR3) are separated from each other in the primary structure by framework regions. There are three CDRs in each variable region (HCDRl, HCDR2, HCDR3; LCDRl, LCDR2, LCDR3; also known as CDRH and CDRL, respectively). In certain embodiments, the antibody VH comprises the following four FRs and three CDRs: FR1-HCDR1-FR2-HCDR2-FR3-HCDR3-FR4; and the antibody VL comprises the following four FRs and three CDRs: FR1-LCDR1- FR2-LCDR2-FR3-LCDR3-FR4. In general, VH and VL together form an antigen binding site via their corresponding CDRs.
如本文所用,CDR之「變異體」係指具有至多1至3個胺基酸取代(例如,守恆或非守恆取代)、刪除或其組合之CDR序列的功能變異體。As used herein, "variants" of CDRs refer to functional variants of CDR sequences with up to 1 to 3 amino acid substitutions (eg, conservative or non-conservative substitutions), deletions, or combinations thereof.
可根據任何已知方法或方案,諸如Kabat、Chothia、EU、IMGT或AHo編號方案對CDR及骨架區進行編號(參見例如,Kabat等人, 「Sequences of Proteins of Immunological Interest, US Dept. Health and Human Services, Public Health Service National Institutes of Health, 1991, 5th 編輯;Chothia and Lesk, J. Mol. Biol. 196:901-917 (1987));Lefranc等人, Dev. Comp. Immunol. 27:55, 2003;Honegger and Plückthun, J. Mol. Bio. 309:657-670 (2001))。等效殘基位置可使用抗原受體編號及受體分類(ANARCI)軟體工具(2016,Bioinformatics 15:298-300)標註且比較不同分子。因此,根據一個編號方案鑑別如本文所提供之例示性可變域(VH或VL)序列的CDR不包括包含使用不同編號方案確定的相同可變域之CDR的抗體。在某些實施例中,提供一種抗體或抗原結合片段,其包含根據以下中之任一者之VH序列的CDR:SEQ ID NO.: 22、32、42、52、62、72、74、84、96、106、119、129、139、150、163、173、175、178、186、189、191、198、208、218、228、240、254、264、274、284、298、312、322、332、350、351、353、359、361、363、365、367、368、369、379、389、399、409、419、429、434、444、454、464、474、484、494、504、514、524、534、544、554、564、574、584、594、604、614、624、626、628、630、634、636、638、640、642、644、646、648、650、652、654、656、658、660、662、664、666、668、670、672、674、676、678、680、682、684、692、740、741、742、743、748、749、750、752、754、756、758、759、761、762及764及根據以下中之任一者之VL序列的CDR:SEQ ID NO.: 26、36、46、56、66、78、88、94、100、110、123、133 143、154、157、168、194、196、202、212、222、232、238、244、250、252、258、268、278、288、294、296、302、308、310、316、326、336、355、357、373、383、393、403、413、423、438、448、458、468、478、488、498、508、518、528、538、548、558、568、578、588、598、608、618、686、696、738、744及746,如使用任何已知CDR編號方法確定,包括Kabat、Chothia、EU、IMGT、Martin (增強之Chothia)、接觸及AHo編號方法。在一些實施例中,CDR係根據IMGT編號方法。在某些實施例中,CDR係根據由化學計算組(CCG)研發之抗體編號方法;例如使用分子操作環境(MOE)軟體(www.chemcomp.com)。CDRs and framework regions can be numbered according to any known method or scheme, such as the Kabat, Chothia, EU, IMGT or AHo numbering scheme (see, e.g., Kabat et al., "Sequences of Proteins of Immunological Interest, US Dept. Health and Human" Services, Public Health Service National Institutes of Health, 1991, 5th ed.; Chothia and Lesk, J. Mol. Biol. 196:901-917 (1987)); Lefranc et al., Dev. Comp. Immunol. 27:55, 2003; Honegger and Plückthun, J. Mol. Bio. 309:657-670 (2001)). Equivalent residue positions can be used using the Antigen Receptor Numbering and Receptor Classification (ANARCI) software tool (2016, Bioinformatics 15:298- 300) annotate and compare different molecules. Thus, identifying CDRs of exemplary variable domain (VH or VL) sequences as provided herein according to one numbering scheme does not include antibodies comprising CDRs of the same variable domain determined using a different numbering scheme In certain embodiments, there is provided an antibody or antigen-binding fragment comprising CDRs according to the VH sequence of any one of the following: SEQ ID NO.: 22, 32, 42, 52, 62, 72, 74, 84, 96, 106, 119, 129, 139, 150, 163, 173, 175, 178, 186, 189, 191, 198, 208, 218, 228, 240, 254, 264, 274, 284, 298, 312, 322, 332, 350, 351, 353, 359, 361, 363, 365, 367, 368, 369, 379, 389, 399, 409, 419, 429, 434, 444, 454, 464, 474, 484, 494, 504, 514, 524, 534, 544, 554, 564, 574, 584, 594, 604, 614, 624, 626, 628, 630, 634, 636, 638, 640, 642, 644, 646, 648, 650, 652, 654, 656, 658, 660, 662, 664, 666, 668, 670, 672, 674, 676, 678, 680, 682, 684, 692, 740, 741, 742, 743, 748, 749, 750, 752, 754, 756, 758, 759, 761, 762 and 764 and the CDRs according to the VL sequence of any of the following: SEQ ID NO.: 26, 36, 46, 56, 66, 78, 88, 94, 100, 110, 123, 133, 143, 154, 157, 168, 194, 196, 202, 212, 222, 232, 238, 244, 250, 252, 258, 268, 278, 288, 294, 296, 302, 308, 310, 316 , 326, 336, 355, 357, 373, 383, 393, 403, 413, 423, 438, 448, 458, 468, 478, 488, 498, 508, 518, 528, 538, 548, 558, 568, 578 , 588, 598, 608, 618, 686, 696, 738, 744, and 746, as determined using any known CDR numbering method, including Kabat, Chothia, EU, IMGT, Martin (Enhanced Chothia), contact, and AHo numbering methods . In some embodiments, the CDRs are numbered according to the IMGT method. In certain embodiments, the CDRs are according to an antibody numbering method developed by the Chemical Computation Group (CCG); eg, using Molecular Operating Environment (MOE) software (www.chemcomp.com).
在某些實施例中,提供一種抗體或一種抗原結合片段,其包含重鏈可變域(VH)及輕鏈可變域(VL),該重鏈可變域(VH)包含CDRH1、CDRH2及CDRH3,且該輕鏈可變域(VL)包含CDRL1、CDRL2及CDRL3,其中:(i)該CDRH1包含根據以下中之任一者之胺基酸序列或由其組成:SEQ ID NO.: 23、33、43、53、63、75、85、97、107、120、130、140、147、160、170、174、183、190、199、209、219、229、241、255、265、275、285、299、313、323、333、370、380、390、400、410、420、430、435、445、455、465、475、485、495、505、515、525、535、545、555、565、575、585、595、605、615、631、693、740、741、742及743,或其包含一個、二個或三個酸取代之序列變異體,該等取代中之一或多者任擇地為守恆取代及/或為對經生殖系編碼之胺基酸之取代;(ii)該CDRH2包含根據以下中之任一者之胺基酸序列或由其組成:SEQ ID NO.: 24、34、44、54、64、76、86、98、108、121、131、141、148、151、161、171、184、200、210、220、230、242、256、266、276、286、300、314、324、334、352、360、362、364、366、371、381、391、401、411、421、431、436、446、456、466、476、486、496、506、516、526、536、546、556、566、576、586、596、606、616、625、632、635、637、639、641、643、645、647、649、651、653、655、657、659、661、663、665、667、669、671、673、675、677、679、681、683、685及694,或其包含一個、二個或三個胺基酸取代之序列變異體,該等取代中之一或多者任擇地為守恆取代及/或為對經生殖系編碼之胺基酸之取代;(iii)該CDRH3包含根據以下中之任一者之胺基酸序列或由其組成:SEQ ID NO.: 25、35、45、55、65、77、87、99、109、122、132、142、149、162、164、165、172、176、177、179、180、185、187、188、201、211、221、231、243、257、267、277、287、301、315、325、335、354、372、382、392、402、412、422、432、437、447、457、467、477、487、497、507、517、527、537、547、557、567、577、587、597、607、617、627、633、695、751、753、755、757、760、763、765及766,或其包含一個、二個或三個胺基酸取代之序列變異體,該等取代中之一或多者任擇地為守恆取代及/或為對經生殖系編碼之胺基酸之取代;(iv)該CDRL1包含根據以下中之任一者之胺基酸序列或由其組成:SEQ ID NO.: 27、37、47、57、67、79、89、101、111、124、134、144、152、155、156、158、159、166、181、192、203、213、223、233、245、259、269、279、289、303、317、327、337、356、374、384、394、404、414、424、439、449、459、469、479、489、499、509、519、529、539、549、559、569、579、589、599、609、619、687及697,或其包含一個、二個或三個胺基酸取代之序列變異體,該等取代中之一或多者任擇地為守恆取代及/或為對經生殖系編碼之胺基酸之取代;(v)該CDRL2包含根據以下中之任一者之胺基酸序列或由其組成:SEQ ID NO.: 28、38、48、58、68、80、90、102、112、125、135、145、153、167、182、193、204、214、224、234、246、260、270、280、290、304、318、328、338、375、385、395、405、415、425、440、450、460、470、480、490、500、510、520、530、540、550、560、570、580、590、600、610、620、688及698,或其包含一個、二個或三個胺基酸取代之序列變異體,該等取代中之一或多者任擇地為守恆取代及/或為對經生殖系編碼之胺基酸之取代;及/或(vi)該CDRL3包含根據以下中之任一者之胺基酸序列或由其組成:SEQ ID NO.: 29、39、49、59、69、81、91、103、113、126、136、146、169、195、197、205、215、225、235、247、261、271、281、291、305、319、329、339、358、376、386、396、406、416、426、441、451、461、471、481、491、501、511、521、531、541、551、561、571、581、591、601、611、621、689、699、745及747,或其包含一個、二個或三個胺基酸取代之序列變異體,該等取代中之一或多者任擇地為守恆取代及/或為對經生殖系編碼之胺基酸之取代,其中該抗體或抗原結合片段能夠結合至表現於宿主細胞之細胞表面上之SARS-CoV-2的表面醣蛋白。In certain embodiments, there is provided an antibody or an antigen-binding fragment comprising a heavy chain variable domain (VH) and a light chain variable domain (VL), the heavy chain variable domain (VH) comprising CDRH1, CDRH2 and CDRH3, and the light chain variable domain (VL) comprises CDRL1, CDRL2 and CDRL3, wherein: (i) the CDRH1 comprises or consists of an amino acid sequence according to any of the following: SEQ ID NO.: 23 , 33, 43, 53, 63, 75, 85, 97, 107, 120, 130, 140, 147, 160, 170, 174, 183, 190, 199, 209, 219, 229, 241, 255, 265, 275 , 285, 299, 313, 323, 333, 370, 380, 390, 400, 410, 420, 430, 435, 445, 455, 465, 475, 485, 495, 505, 515, 525, 535, 545, 555 , 565, 575, 585, 595, 605, 615, 631, 693, 740, 741, 742 and 743, or sequence variants thereof comprising one, two or three acid substitutions, one or more of these substitutions is optionally a conservative substitution and/or is a substitution to a germline encoded amino acid; (ii) the CDRH2 comprises or consists of an amino acid sequence according to any of the following: SEQ ID NO. : 24, 34, 44, 54, 64, 76, 86, 98, 108, 121, 131, 141, 148, 151, 161, 171, 184, 200, 210, 220, 230, 242, 256, 266, 276 , 286, 300, 314, 324, 334, 352, 360, 362, 364, 366, 371, 381, 391, 401, 411, 421, 431, 436, 446, 456, 466, 476, 486, 496, 506 , 516, 526, 536, 546, 556, 566, 576, 586, 596, 606, 616, 625, 632, 635, 637, 639, 641, 643, 645, 647, 649, 651, 653, 655, 657 , 659, 661, 663, 665, 667, 669, 671, 673, 675, 677, 679, 681, 683, 685 and 694, or sequence variants thereof comprising one, two or three amino acid substitutions, One or more of these substitutions are optionally conservative substitutions and/or are substitutions for germline encoded amino acids; (iii) the CDRH3 comprises an amino acid sequence according to any of the following or It consists of: SEQ ID NO.: 25, 35, 45, 55, 65, 77, 87, 99, 109, 122, 132, 14 2, 149, 162, 164, 165, 172, 176, 177, 179, 180, 185, 187, 188, 201, 211, 221, 231, 243, 257, 267, 277, 287, 301, 315, 325, 335, 354, 372, 382, 392, 402, 412, 422, 432, 437, 447, 457, 467, 477, 487, 497, 507, 517, 527, 537, 547, 557, 567, 577, 587, 597, 607, 617, 627, 633, 695, 751, 753, 755, 757, 760, 763, 765 and 766, or sequence variants thereof comprising one, two or three amino acid substitutions, such substitutions One or more of these are optionally conservative substitutions and/or are substitutions for germline encoded amino acids; (iv) the CDRL1 comprises or consists of an amino acid sequence according to any of the following : SEQ ID NO.: 27, 37, 47, 57, 67, 79, 89, 101, 111, 124, 134, 144, 152, 155, 156, 158, 159, 166, 181, 192, 203, 213, 223, 233, 245, 259, 269, 279, 289, 303, 317, 327, 337, 356, 374, 384, 394, 404, 414, 424, 439, 449, 459, 469, 479, 489, 499, 509, 519, 529, 539, 549, 559, 569, 579, 589, 599, 609, 619, 687 and 697, or sequence variants thereof comprising one, two or three amino acid substitutions, such substitutions One or more of which are optionally conservative substitutions and/or are substitutions for germline encoded amino acids; (v) the CDRL2 comprises or consists of an amino acid sequence according to any of the following : SEQ ID NO.: 28, 38, 48, 58, 68, 80, 90, 102, 112, 125, 135, 145, 153, 167, 182, 193, 204, 214, 224, 234, 246, 260, 270, 280, 290, 304, 318, 328, 338, 375, 385, 395, 405, 415, 425, 440, 450, 460, 470, 480, 490, 500, 510, 520, 530, 540, 550, 560, 570, 580, 590, 600, 610, 620, 688 and 698, or sequence variants thereof comprising one, two or three amino acid substitutions, one or more of which are optionally Conservative substitutions and/or are substitutions for germline encoded amino acids; and/or (vi) the CDRL3 comprises according to the following The amino acid sequence of any one of or consisting of: SEQ ID NO.: 29, 39, 49, 59, 69, 81, 91, 103, 113, 126, 136, 146, 169, 195, 197, 205 , 215, 225, 235, 247, 261, 271, 281, 291, 305, 319, 329, 339, 358, 376, 386, 396, 406, 416, 426, 441, 451, 461, 471, 481, 491 , 501, 511, 521, 531, 541, 551, 561, 571, 581, 591, 601, 611, 621, 689, 699, 745 and 747, or those containing one, two or three amino acid substitutions Sequence variants, one or more of these substitutions are optionally conservative substitutions and/or substitutions for germline-encoded amino acids, wherein the antibody or antigen-binding fragment is capable of binding to a host cell-expressed Surface glycoprotein of SARS-CoV-2 on the cell surface.
在本發明所揭露之實施例中之任一者中,抗體或抗原結合片段能夠預防及/或中和在活體外感染模型中及/或在活體內動物感染模型及/或人類中之SARS-CoV-2感染。In any of the embodiments disclosed herein, the antibody or antigen-binding fragment is capable of preventing and/or neutralizing SARS-CoV in an in vitro infection model and/or in an in vivo animal infection model and/or in humans CoV-2 infection.
在本發明所揭露之實施例中之任一者中,抗體或抗原結合片段包含根據以下之CDRH1、CDRH2、CDRH3、CDRL1、CDRL2及CDRL3胺基酸序列:(i)分別為SEQ ID NO.: 23-25及27-29;(ii)分別為SEQ ID NO.: 33-35及37-39;(iii)分別為SEQ ID NO.: 43-45及47-49;(iv)分別為SEQ ID NO.: 53-55及57-59;(v)分別為SEQ ID NO.: 63-65及67-69;(vi)分別為SEQ ID NO.: 75-77及79-81;(vii)分別為SEQ ID NO.: 85-87及89-91;(viii)分別為SEQ ID NO.: 97-99及101-103;(ix)分別為SEQ ID NO.: 107-109及111-113;(x)分別為SEQ ID NO.: 120-122及124-126;(xi)分別為SEQ ID NO.: 130-132及134-136;(xii)分別為SEQ ID NO.: 23或147,24、148或151中之任一者,25或149,27、152、155、156、158或159中之任一者,28或153,及29;(xiii)分別為SEQ ID NO.: 43或160,44或161,45、162、164或165中之任一者,47或166,48或167,及49或169;(xiv)分別為SEQ ID NO.: 130、170或174中之任一者,130、131、132、134或181,135或182,及136;(xv)分別為SEQ ID NO.: 53、183或190中之任一者,54或184,55、185、187或188中之任一者,57或192中之任一者,58或193,及59、195或197中之任一者;(xvi)分別為SEQ ID NO.: 199-201及203-205;(xvii)分別為SEQ ID NO.: 209-211及213-215;(xviii)分別為SEQ ID NO.: 219-221及223-225;(xix)分別為SEQ ID NO.: 229-231及233-235;(xx)分別為SEQ ID NO.: 241-243及245-247;(xxi)分別為SEQ ID NO.: 255-257及259-261;(xxii)分別為SEQ ID NO.: 265-267及269-271;(xxiii)分別為SEQ ID NO.: 275-277及279-281;(xxiv)分別為SEQ ID NO.: 285-287 289-291,(xxv)分別為SEQ ID NO.: 299-301及303-305;(xxvi)分別為SEQ ID NO.: 313-315及317-319;(xxvii)分別為SEQ ID NO.: 323-325及327-329;(xxviii)分別為SEQ ID NO.: 333-335及337-339;(xxix)分別為SEQ ID NO.: 229、230或352,231或354,及233或356,234,及235或358;(xxx)分別為SEQ ID NO.: 313,314、360、362、364或366中之任一者、315及317-319;(xxxi)分別為SEQ ID NO.: 370-372及374-376;(xxxii)分別為SEQ ID NO.: 380-382及384-386;(xxxiii)分別為SEQ ID NO.: 390-392及394-396;(xxxiv)分別為SEQ ID NO.: 400-402及404-406;(xxxv)分別為SEQ ID NO.: 410-412及414-416;(xxxvi)分別為SEQ ID NO.: 420-422及424-426;(xxxvii)分別為SEQ ID NO.: 435-437及439-441;(xxxviii)分別為SEQ ID NO.: 445-447及449-451;(xxxix)分別為SEQ ID NO.: 455-457及459-461;(xxxx)分別為SEQ ID NO.: 465-467及469-471;(xxxxi)分別為SEQ ID NO.: 475-477及479-481;(xxxxii)分別為SEQ ID NO.: 485-487及489-491;(xxxxiii)分別為SEQ ID NO.: 494-497及499-501;(xxxxiv)分別為SEQ ID NO.: 505-507及509-511;(xxxxv)分別為SEQ ID NO.: 515-517及519-521;(xxxxvi)分別為SEQ ID NO.: 525-527及529-531;(xxxxvii)分別為SEQ ID NO.: 535-537及539-541;(xxxxviii)分別為SEQ ID NO.: 545-547及549-551;(xxxxix)分別為SEQ ID NO.: 555-557及559-561;(xxxxx)分別為SEQ ID NO.: 565-567及569-571;(xxxxxi)分別為SEQ ID NO.: 575-577及579-581;(xxxxxii)分別為SEQ ID NO.: 585,586或625,587或627,及589-591;(xxxxxiii)分別為SEQ ID NO.: 595-597及599-601;(xxxxxiv)分別為SEQ ID NO.: 605-607及609-611;(xxxxxv)分別為SEQ ID NO.: 615-617及619-621,(xxxxxvi)分別為SEQ ID NO.: 631,632或635或637或639或641或643或645或647或649或651或653或655或657或659或661或663或665或667或669或671或673或675或677或679或681或683或685,633及697-699;(xxxxxvii)分別為SEQ ID NO.: 693-695及697-699;(xxxxxviii)分別為SEQ ID NO.: 400,401,及751、753、755、757或760中之任一者,及404,405,及745或747中之任一者;(xxxxxxix)分別為SEQ ID NO.: 585,586,及762或764,及589-591;或(xxxxxxx)分別為SEQ ID NO.: 400、401、766及404-406。In any of the embodiments disclosed herein, the antibody or antigen-binding fragment comprises the CDRH1, CDRH2, CDRH3, CDRL1, CDRL2, and CDRL3 amino acid sequences according to: (i) SEQ ID NO., respectively: 23-25 and 27-29; (ii) SEQ ID NO.: 33-35 and 37-39, respectively; (iii) SEQ ID NO.: 43-45 and 47-49, respectively; (iv) SEQ ID NO.: 43-45 and 47-49, respectively ID NO.: 53-55 and 57-59; (v) respectively SEQ ID NO.: 63-65 and 67-69; (vi) respectively SEQ ID NO.: 75-77 and 79-81; (vii) ) are respectively SEQ ID NO.: 85-87 and 89-91; (viii) are respectively SEQ ID NO.: 97-99 and 101-103; (ix) are respectively SEQ ID NO.: 107-109 and 111- 113; (x) are respectively SEQ ID NO.: 120-122 and 124-126; (xi) are respectively SEQ ID NO.: 130-132 and 134-136; (xii) are respectively SEQ ID NO.: 23 or any of 147, 24, 148 or 151, 25 or 149, any of 27, 152, 155, 156, 158 or 159, 28 or 153, and 29; (xiii) are SEQ ID NO. : 43 or 160, 44 or 161, any one of 45, 162, 164 or 165, 47 or 166, 48 or 167, and 49 or 169; (xiv) are respectively SEQ ID NO.: 130, 170 or 174 any one of, 130, 131, 132, 134 or 181, 135 or 182, and 136; (xv) are respectively any one of SEQ ID NO.: 53, 183 or 190, 54 or 184, 55, any one of 185, 187 or 188, any one of 57 or 192, 58 or 193, and any one of 59, 195 or 197; (xvi) are SEQ ID NO.: 199-201 and 203-205; (xvii) are respectively SEQ ID NO.: 209-211 and 213-215; (xviii) are respectively SEQ ID NO.: 219-221 and 223-225; (xix) are respectively SEQ ID NO.: 229-231 and 233-235; (xx) are SEQ ID NO.: 241-243 and 245-247 respectively; (xxi) are SEQ ID NO.: 255-257 and 259-261 respectively; (xxii) are SEQ ID NO.: 255-257 and 259-261 respectively ID N O.: 265-267 and 269-271; (xxiii) are respectively SEQ ID NO.: 275-277 and 279-281; (xxiv) are respectively SEQ ID NO.: 285-287 289-291, (xxv) are respectively are SEQ ID NO.: 299-301 and 303-305; (xxvi) are respectively SEQ ID NO.: 313-315 and 317-319; (xxvii) are respectively SEQ ID NO.: 323-325 and 327-329; (xxviii) are SEQ ID NO.: 333-335 and 337-339, respectively; (xxix) are SEQ ID NO.: 229, 230 or 352, 231 or 354, and 233 or 356, 234, and 235 or 358, respectively; (xxx) are any of SEQ ID NO.: 313, 314, 360, 362, 364 or 366, 315 and 317-319, respectively; (xxxi) are SEQ ID NO.: 370-372 and 374-376, respectively (xxxii) are respectively SEQ ID NO.: 380-382 and 384-386; (xxxiii) are respectively SEQ ID NO.: 390-392 and 394-396; (xxxiv) are respectively SEQ ID NO.: 400-402 and 404-406; (xxxv) are respectively SEQ ID NO.: 410-412 and 414-416; (xxxvi) are respectively SEQ ID NO.: 420-422 and 424-426; (xxxvii) are respectively SEQ ID NO. : 435-437 and 439-441; (xxxviii) are respectively SEQ ID NO.: 445-447 and 449-451; (xxxix) are respectively SEQ ID NO.: 455-457 and 459-461; (xxxx) are respectively SEQ ID NO.: 465-467 and 469-471; (xxxxi) are SEQ ID NO.: 475-477 and 479-481, respectively; (xxxxii) are SEQ ID NO.: 485-487 and 489-491, respectively; ( xxxxiii) are respectively SEQ ID NO.: 494-497 and 499-501; (xxxxiv) are respectively SEQ ID NO.: 505-507 and 509-511; (xxxxv) are respectively SEQ ID NO.: 515-517 and 519 -521; (xxxxvi) are respectively SEQ ID NO.: 525-527 and 529-531; (xxxxvii) are respectively SEQ I D NO.: 535-537 and 539-541; (xxxxviii) are SEQ ID NO.: 545-547 and 549-551 respectively; (xxxxix) are SEQ ID NO.: 555-557 and 559-561 respectively; (xxxxx ) are respectively SEQ ID NO.: 565-567 and 569-571; (xxxxxi) are respectively SEQ ID NO.: 575-577 and 579-581; (xxxxxii) are respectively SEQ ID NO.: 585, 586 or 625, 587 or 627, and 589-591; (xxxxxiii) are respectively SEQ ID NO.: 595-597 and 599-601; (xxxxxiv) are respectively SEQ ID NO.: 605-607 and 609-611; (xxxxxv) are respectively SEQ ID NO.: 615-617 and 619-621, (xxxxxvi) are SEQ ID NO.: 631, 632 or 635 or 637 or 639 or 641 or 643 or 645 or 647 or 649 or 651 or 653 or 655 or 657, respectively or 659 or 661 or 663 or 665 or 667 or 669 or 671 or 673 or 675 or 677 or 679 or 681 or 683 or 685, 633 and 697-699; (xxxxxvii) are SEQ ID NO.: 693-695 and 697 respectively -699; (xxxxxviii) is SEQ ID NO.: 400, 401, and any of 751, 753, 755, 757, or 760, and any of 404, 405, and 745 or 747, respectively; (xxxxxxix ) are SEQ ID NO.: 585, 586, and 762 or 764, and 589-591, respectively; or (xxxxxxx) are SEQ ID NO.: 400, 401, 766, and 404-406, respectively.
在本發明所揭露之實施例中之任一者中,抗體或抗原結合片段包含根據以下之CDRH1、CDRH2、CDRH3、CDRL1、CDRL2及CDRL3胺基酸序列:分別為SEQ ID NO.:631,632或635或637或639或641或643或645或647或649或651或653或655或657或659或661或663或665或667或669或671或673或675或677或679或681或683或685,633及697-699。在本發明所揭露之實施例中之任一者中,抗體或抗原結合片段包含分別根據SEQ ID NO.:693-695及697-699之CDRH1、CDRH2、CDRH3、CDRL1、CDRL2及CDRL3胺基酸序列。In any of the embodiments disclosed herein, the antibody or antigen-binding fragment comprises the CDRH1, CDRH2, CDRH3, CDRL1, CDRL2, and CDRL3 amino acid sequences according to: SEQ ID NO.: 631, 632, respectively or 635 or 637 or 639 or 641 or 643 or 645 or 647 or 649 or 651 or 653 or 655 or 657 or 659 or 661 or 663 or 665 or 667 or 669 or 671 or 673 or 675 or 677 or 679 or 681 or 683 or 685, 633 and 697-699. In any of the embodiments disclosed herein, the antibody or antigen-binding fragment comprises CDRH1, CDRH2, CDRH3, CDRL1, CDRL2, and CDRL3 amino acids according to SEQ ID NO.: 693-695 and 697-699, respectively sequence.
在某些實施例中,抗體或抗原結合片段包含分別根據SEQ ID NO.:400-402及404-406之CDRH1、CDRH2、CDRH3、CDRL1、CDRL2或CDRL3胺基酸序列。在某些實施例中,抗體或抗原結合片段包含分別根據SEQ ID NO.:400、401、766及404-406之CDRH1、CDRH2、CDRH3、CDRL1、CDRL2或CDRL3胺基酸序列。在某些實施例中,抗體或抗原結合片段包含分別根據SEQ ID NO.:400-402、404、405及745之CDRH1、CDRH2、CDRH3、CDRL1、CDRL2或CDRL3胺基酸序列。在某些實施例中,抗體或抗原結合片段包含分別根據SEQ ID NO.:400、401、766、404、405及745之CDRH1、CDRH2、CDRH3、CDRL1、CDRL2或CDRL3胺基酸序列。在某些實施例中,抗體或抗原結合片段包含分別根據SEQ ID NO.:400-402、404、405及747之CDRH1、CDRH2、CDRH3、CDRL1、CDRL2或CDRL3胺基酸序列。在某些實施例中,抗體或抗原結合片段包含分別根據SEQ ID NO.:400、401、766、404、405及747之CDRH1、CDRH2、CDRH3、CDRL1、CDRL2或CDRL3胺基酸序列。在某些實施例中,抗體或抗原結合片段包含分別根據SEQ ID NO.:400、401、751及404-406之CDRH1、CDRH2、CDRH3、CDRL1、CDRL2或CDRL3胺基酸序列。在某些實施例中,抗體或抗原結合片段包含分別根據SEQ ID NO.:400、401、753及404-406之CDRH1、CDRH2、CDRH3、CDRL1、CDRL2或CDRL3胺基酸序列。在某些實施例中,抗體或抗原結合片段包含分別根據SEQ ID NO.:400、401、755及404-406之CDRH1、CDRH2、CDRH3、CDRL1、CDRL2或CDRL3胺基酸序列。在某些實施例中,抗體或抗原結合片段包含分別根據SEQ ID NO.:400、401、757及404-406之CDRH1、CDRH2、CDRH3、CDRL1、CDRL2或CDRL3胺基酸序列。在某些實施例中,抗體或抗原結合片段包含分別根據SEQ ID NO.:400、401、760及404-406之CDRH1、CDRH2、CDRH3、CDRL1、CDRL2或CDRL3胺基酸序列。In certain embodiments, the antibody or antigen-binding fragment comprises the CDRH1, CDRH2, CDRH3, CDRL1, CDRL2, or CDRL3 amino acid sequence according to SEQ ID NOs.: 400-402 and 404-406, respectively. In certain embodiments, the antibody or antigen-binding fragment comprises the CDRH1, CDRH2, CDRH3, CDRL1, CDRL2, or CDRL3 amino acid sequence according to SEQ ID NO.: 400, 401, 766, and 404-406, respectively. In certain embodiments, the antibody or antigen-binding fragment comprises the CDRH1, CDRH2, CDRH3, CDRL1, CDRL2, or CDRL3 amino acid sequence according to SEQ ID NO.: 400-402, 404, 405, and 745, respectively. In certain embodiments, the antibody or antigen-binding fragment comprises the CDRH1, CDRH2, CDRH3, CDRL1, CDRL2, or CDRL3 amino acid sequence according to SEQ ID NO.: 400, 401, 766, 404, 405, and 745, respectively. In certain embodiments, the antibody or antigen-binding fragment comprises the CDRH1, CDRH2, CDRH3, CDRL1, CDRL2, or CDRL3 amino acid sequence according to SEQ ID NO.: 400-402, 404, 405, and 747, respectively. In certain embodiments, the antibody or antigen-binding fragment comprises the CDRH1, CDRH2, CDRH3, CDRL1, CDRL2, or CDRL3 amino acid sequence according to SEQ ID NO.: 400, 401, 766, 404, 405, and 747, respectively. In certain embodiments, the antibody or antigen-binding fragment comprises the CDRH1, CDRH2, CDRH3, CDRL1, CDRL2, or CDRL3 amino acid sequence according to SEQ ID NO.: 400, 401, 751, and 404-406, respectively. In certain embodiments, the antibody or antigen-binding fragment comprises the CDRH1, CDRH2, CDRH3, CDRL1, CDRL2, or CDRL3 amino acid sequence according to SEQ ID NO.: 400, 401, 753, and 404-406, respectively. In certain embodiments, the antibody or antigen-binding fragment comprises the CDRH1, CDRH2, CDRH3, CDRL1, CDRL2, or CDRL3 amino acid sequence according to SEQ ID NO.: 400, 401, 755, and 404-406, respectively. In certain embodiments, the antibody or antigen-binding fragment comprises the CDRH1, CDRH2, CDRH3, CDRL1, CDRL2, or CDRL3 amino acid sequence according to SEQ ID NO.: 400, 401, 757, and 404-406, respectively. In certain embodiments, the antibody or antigen-binding fragment comprises the CDRH1, CDRH2, CDRH3, CDRL1, CDRL2, or CDRL3 amino acid sequence according to SEQ ID NO.: 400, 401, 760, and 404-406, respectively.
在某些實施例中,本揭露內容之抗體或抗原結合片段包含CDRH1、CDRH2、CDRH3、CDRL1、CDRL2及CDRL3,其中各CDR獨立地選自以下之相對應的CDR:SARS-CoV-2 S2X16-v1 mAb、SARS-CoV-2 S2X16-v2 mAb、SARS-CoV-2 S2X16-v3 mAb、SARS-CoV-2 S2X16-v4 mAb、SARS-CoV-2 S2X16-v5 mAb、SARS-CoV-2 S2X16-v6 mAb、SARS-CoV-2 S2X16-v7 mAb、SARS-CoV-2 S2X16-v8 mA、b SARS-CoV-2 S2X28-v1 mAb、SARS-CoV-2 S2X30-v1 mAb、SARS-CoV-2 S2X30-v2 mAb、SARS-CoV-2 S2X30-v3 mAb、SARS-CoV-2 S2X30-v4 mAb、SARS-CoV-2 S2X30-v5 mAb、SARS-CoV-2 S2X30-v6 mAb、SARS-CoV-2 S2X47-v1 mAb、SARS-CoV-2 S2X47-v2 mAb、SARS-CoV-2 S2X47-v3 mAb、SARS-CoV-2 S2X47-v4 mAb、SARS-CoV-2 S2X47-v5 mAb、SARS-CoV-2 S2X47-v6 mAb、SARS-CoV-2 S2X47-v7 mAb、SARS-CoV-2 S2X47-v8 mAb、SARS-CoV-2 S2X47-v9 mAb、SARS-CoV-2 S2X55-v1 mAb、SARS-CoV-2 S2X55-v2 mAb、SARS-CoV-2 S2X56-v1 mAb、SARS-CoV-2 S2X58-v1 mAb、SARS-CoV-2 S2X58-v2 mAb、SARS-CoV-2 S2X71-v1 mAb SARS-CoV-2 S2X76-v1 mAb、SARS-CoV-2 S2X76-v2 mAb、SARS-CoV-2 S2X76-v3 mAb、SARS-CoV-2 S2X76-v4 mAb、SARS-CoV-2 S2X11-v1 mAb或SARS-CoV-2 S2X35-v1 mAb、SARS-CoV-2 S2X35-v2 mAb、SARS-CoV-2 S2X35-v3 mAb、SARS-CoV-2 S2X35-v4 mAb、SARS-CoV-2 S2X35-v5 mAb、SARS-CoV-2 S2X35-v6 mAb、SARS-CoV-2 S2X35-v7 mAb、SARS-CoV-2 S2X35-v8 mAb、SARS-CoV-2 S2H30-v1 mAb、SARS-CoV-2 S2H37-v1 mAb、SARS-CoV-2 S2H40-v1 mAb、SARS-CoV-2 S2H58-v1 mAb、SARS-CoV-2 S2H58-v2 mAb、SARS-CoV-2 S2H58-v3 mAb、SARS-CoV-2 S2H58-v4 mAb、SARS-CoV-2 S2H58-v5 mAb、SARS-CoV-2 S2H58-v6 mAb、SARS-CoV-2 S2H58-v7 mAb、SARS-CoV-2 S2H62-v1 mAb、SARS-CoV-2 S2H62-v2 mAb、SARS-CoV-2 S2H62-v3 mAb、SARS-CoV-2 S2H66-v1 mAb、SARS-CoV-2 S2H66-v2 mAb、SARS-CoV-2 S2H66-v3 mAb、SARS-CoV-2 S2H70-v1 mAb、SARS-CoV-2 S2H71-v1 mAb、SARS-CoV-2 S2H73-v1 mAb、SARS-CoV-2 S2N12-v1 mAb、SARS-CoV-2 S2N12-v2 mAb、SARS-CoV-2 S2N12-v3 mAb、SARS-CoV-2 S2N22-v1 mAb、SARS-CoV-2 S2N22-v2 mAb、SARS-CoV-2 S2N22-v3 mAb、SARS-CoV-2 S2N22-v4 mAb、SARS-CoV-2 S2N22-v5 mAb、SARS-CoV-2 S2N22-v6 mAb、SARS-CoV-2 S2N22-v7 mAb、SARS-CoV-2 S2N25-v1 mAb、SARS-CoV-2 S2N28-v1 mAb、SARS-CoV-2 S2E6-v1 mAb、SARS-CoV-2 S2E7-v1 mAb、SARS-CoV-2 S2E9-v1 mAb、SARS-CoV-2 S2E12-v1 mAb、SARS-CoV-2 S2E12-v2 mAb、SARS-CoV-2 S2E13-v1 mAb、SARS-CoV-2 S2E14-v1 mAb、SARS-CoV-2 S2K4-v1 mAb、SARS-CoV-2 S2X193-v1 mAb、SARS-CoV-2 S2X195-v1 mAb、SARS-CoV-2 S2X219-v1 mAb、SARS-CoV-2 S2X244-v1 mAb、SARS-CoV-2 S2X246-v1 mAb、SARS-CoV-2 S2X256-v1 mAb、SARS-CoV-2 S2X269-v1 mAb、SARS-CoV-2 S2X278-v1 mAb、SARS-CoV-2 S2M7-v1 mAb、SARS-CoV-2 S2M11-v1 mAb、SARS-CoV-2 S2M16-v1 mAb、SARS-CoV-2 S2M28-v1 mAb、SARS-CoV-2 S2L49-v1 mAb、SARS CoV-2 S2D65-v1 mAb、SARS CoV-2 S2D97-v1 mAb、SARS CoV-2 S2D106-v1 mAb、SARS CoV-2 S2X149-v1 mAb、SARS CoV-2 S2X179-v1 mAb、SARS-CoV-2 S2H101 mAb、抗體409_11_1_v2、抗體409_11_1_v3、抗體409_11_1_v4、抗體409_11_1_v5、抗體409_11_1_v6、抗體409_11_2_v1、抗體409_11_2_v2、抗體409_11_2_v3、抗體409_11_2_v4、抗體409_11_2_v5、抗體409_11_2_v6、抗體409_11_2_v7、抗體409_11_2_v8、抗體409_11_2_v9、抗體409_11_2_v10、抗體409_11_2_v11、抗體409_11_2_v12、抗體409_11_2_v13、抗體409_11_2_v14、抗體409_11_2_v15、抗體409_11_2_v16、抗體409_11_2_v17、抗體409_11_2_v18、抗體409_11_2_v19、抗體409_11_2_v20、抗體409_11_2_v21、抗體409_11_2_v22、抗體409_11_2_v23、抗體409_11_2_v24、抗體409_11_2_v25、抗體409_11_2_v26、抗體409_11_2_v27、抗體409_11_3_v1、抗體409_11_4_v2、抗體409_11_4_v3、抗體409_11_4_v4、抗體409_11_4_v5、抗體409_11_4_v6、抗體409_11_4_v7、抗體409_11_4_v8、抗體409_11_4_v9、抗體409_11_4_v10、抗體409_11_4_v11、抗體409_11_4_v12或抗體409_11_4_v13,如表2中所提供。亦即,涵蓋來自SARS-CoV-2 mAb及表2中所提供之其變異體序列之CDR的所有組合。In certain embodiments, the antibodies or antigen-binding fragments of the present disclosure comprise CDRH1, CDRH2, CDRH3, CDRL1, CDRL2, and CDRL3, wherein each CDR is independently selected from the corresponding CDRs of: SARS-CoV-2 S2X16- v1 mAb, SARS-CoV-2 S2X16-v2 mAb, SARS-CoV-2 S2X16-v3 mAb, SARS-CoV-2 S2X16-v4 mAb, SARS-CoV-2 S2X16-v5 mAb, SARS-CoV-2 S2X16- v6 mAb, SARS-CoV-2 S2X16-v7 mAb, SARS-CoV-2 S2X16-v8 mA, b SARS-CoV-2 S2X28-v1 mAb, SARS-CoV-2 S2X30-v1 mAb, SARS-CoV-2 S2X30 -v2 mAb, SARS-CoV-2 S2X30-v3 mAb, SARS-CoV-2 S2X30-v4 mAb, SARS-CoV-2 S2X30-v5 mAb, SARS-CoV-2 S2X30-v6 mAb, SARS-CoV-2 S2X47 -v1 mAb, SARS-CoV-2 S2X47-v2 mAb, SARS-CoV-2 S2X47-v3 mAb, SARS-CoV-2 S2X47-v4 mAb, SARS-CoV-2 S2X47-v5 mAb, SARS-CoV-2 S2X47 -v6 mAb, SARS-CoV-2 S2X47-v7 mAb, SARS-CoV-2 S2X47-v8 mAb, SARS-CoV-2 S2X47-v9 mAb, SARS-CoV-2 S2X55-v1 mAb, SARS-CoV-2 S2X55 -v2 mAb, SARS-CoV-2 S2X56-v1 mAb, SARS-CoV-2 S2X58-v1 mAb, SARS-CoV-2 S2X58-v2 mAb, SARS-CoV-2 S2X71-v1 mAb SARS-CoV-2 S2X76- v1 mAb, SARS-CoV-2 S2X76-v2 mAb, SARS-CoV-2 S2X76-v3 mAb, SARS-CoV-2 S2X76-v4 mAb, SARS-CoV-2 S2X11-v1 mAb, or SARS-CoV-2 S2X35- v1 mAb, SARS-CoV-2 S2X35-v2 mAb, SARS-CoV-2 S2X35-v3 mAb, SARS -CoV-2 S2X35-v4 mAb, SARS-CoV-2 S2X35-v5 mAb, SARS-CoV-2 S2X35-v6 mAb, SARS-CoV-2 S2X35-v7 mAb, SARS-CoV-2 S2X35-v8 mAb, SARS -CoV-2 S2H30-v1 mAb, SARS-CoV-2 S2H37-v1 mAb, SARS-CoV-2 S2H40-v1 mAb, SARS-CoV-2 S2H58-v1 mAb, SARS-CoV-2 S2H58-v2 mAb, SARS -CoV-2 S2H58-v3 mAb, SARS-CoV-2 S2H58-v4 mAb, SARS-CoV-2 S2H58-v5 mAb, SARS-CoV-2 S2H58-v6 mAb, SARS-CoV-2 S2H58-v7 mAb, SARS -CoV-2 S2H62-v1 mAb, SARS-CoV-2 S2H62-v2 mAb, SARS-CoV-2 S2H62-v3 mAb, SARS-CoV-2 S2H66-v1 mAb, SARS-CoV-2 S2H66-v2 mAb, SARS -CoV-2 S2H66-v3 mAb, SARS-CoV-2 S2H70-v1 mAb, SARS-CoV-2 S2H71-v1 mAb, SARS-CoV-2 S2H73-v1 mAb, SARS-CoV-2 S2N12-v1 mAb, SARS -CoV-2 S2N12-v2 mAb, SARS-CoV-2 S2N12-v3 mAb, SARS-CoV-2 S2N22-v1 mAb, SARS-CoV-2 S2N22-v2 mAb, SARS-CoV-2 S2N22-v3 mAb, SARS -CoV-2 S2N22-v4 mAb, SARS-CoV-2 S2N22-v5 mAb, SARS-CoV-2 S2N22-v6 mAb, SARS-CoV-2 S2N22-v7 mAb, SARS-CoV-2 S2N25-v1 mAb, SARS -CoV-2 S2N28-v1 mAb, SARS-CoV-2 S2E6-v1 mAb, SARS-CoV-2 S2E7-v1 mAb, SARS-CoV-2 S2E9-v1 mAb, SARS-CoV-2 S2E12-v1 mAb, SARS -CoV-2 S2E12-v2 mAb, SARS-CoV-2 S2E13-v1 mAb , SARS-CoV-2 S2E14-v1 mAb, SARS-CoV-2 S2K4-v1 mAb, SARS-CoV-2 S2X193-v1 mAb, SARS-CoV-2 S2X195-v1 mAb, SARS-CoV-2 S2X219-v1 mAb , SARS-CoV-2 S2X244-v1 mAb, SARS-CoV-2 S2X246-v1 mAb, SARS-CoV-2 S2X256-v1 mAb, SARS-CoV-2 S2X269-v1 mAb, SARS-CoV-2 S2X278-v1 mAb , SARS-CoV-2 S2M7-v1 mAb, SARS-CoV-2 S2M11-v1 mAb, SARS-CoV-2 S2M16-v1 mAb, SARS-CoV-2 S2M28-v1 mAb, SARS-CoV-2 S2L49-v1 mAb , SARS CoV-2 S2D65-v1 mAb, SARS CoV-2 S2D97-v1 mAb, SARS CoV-2 S2D106-v1 mAb, SARS CoV-2 S2X149-v1 mAb, SARS CoV-2 S2X179-v1 mAb, SARS-CoV- 2 S2H101 mAb, an antibody 409_11_1_v2, antibody 409_11_1_v3, antibody 409_11_1_v4, antibody 409_11_1_v5, antibody 409_11_1_v6, antibody 409_11_2_v1, antibody 409_11_2_v2, antibody 409_11_2_v3, antibody 409_11_2_v4, antibody 409_11_2_v5, antibody 409_11_2_v6, antibody 409_11_2_v7, antibody 409_11_2_v8, antibody 409_11_2_v9, antibody 409_11_2_v10, antibody 409_11_2_v11, antibodies 409_11_2_v12, antibody 409_11_2_v13, antibody 409_11_2_v14, antibody 409_11_2_v15, antibody 409_11_2_v16, antibody 409_11_2_v17, antibody 409_11_2_v18, antibody 409_11_2_v19, antibody 409_11_2_v20, antibody 409_11_2_v21, antibody 409_11_2_v22, antibody 409_11_2_v23, antibody 409_11_2_v24, antibody 409_11_2_v25, antibody 409_11_2_v26, antibody 409_11_2_v27, Antibody 409_11_3_v1, Antibody 409_11 _4_v2, antibodies 409_11_4_v3, antibody 409_11_4_v4, antibody 409_11_4_v5, antibody 409_11_4_v6, antibody 409_11_4_v7, antibody 409_11_4_v8, antibody 409_11_4_v9, antibody 409_11_4_v10, antibody 409_11_4_v11, an antibody or antibody 409_11_4_v12 409_11_4_v13, as provided in Table 2. That is, all combinations of CDRs from the SARS-CoV-2 mAb and its variant sequences provided in Table 2 are encompassed.
在抗體發展期間,生殖系可變(v)、連接(J)及多樣性(D)基因座中之DNA可重新佈置且編碼序列中之核苷酸插入及/或缺失可出現。體細胞突變可由所得序列編碼,且可參照相對應的已知生殖系序列來鑑別。在一些情況下,對於抗體之所需特性(例如,結合至SARS-CoV-2抗原)而言並不重要,或對抗體賦予非所需特性(例如,投予抗體之個體的增加之免疫原性風險)或二者之體細胞突變可經相對應的經生殖系編碼之胺基酸或藉由不同胺基酸置換,使得改進或維持抗體之所需特性且降低或消除抗體之非所需特性。因此,在一些實施例中,本揭露內容之抗體或抗原結合片段包含與親體抗體或抗原結合片段相比在可變區中之至少一個更多經生殖系編碼之胺基酸,其限制條件為親體抗體或抗原結合片段包含一或多個體細胞突變。本揭露內容之可變區及抗SARS-CoV-2抗體之CDR胺基酸序列提供於本文之表2中。During antibody development, DNA in germline variable (v), joining (J), and diversity (D) loci can rearrange and nucleotide insertions and/or deletions in coding sequences can occur. Somatic mutations can be encoded by the resulting sequences and can be identified by reference to corresponding known germline sequences. In some cases, the desired property of the antibody (eg, binding to a SARS-CoV-2 antigen) is not critical, or the antibody confers an undesired property (eg, increased immunogen in the individual to which the antibody is administered). Sexual risk) or somatic mutations of both can be substituted by the corresponding germline-encoded amino acid or by a different amino acid, so that the desired properties of the antibody are improved or maintained and the undesirable properties of the antibody are reduced or eliminated characteristic. Thus, in some embodiments, an antibody or antigen-binding fragment of the present disclosure comprises at least one more germline-encoded amino acid in the variable region than the parent antibody or antigen-binding fragment, with the proviso that The parent antibody or antigen-binding fragment contains one or more somatic mutations. The variable region and CDR amino acid sequences of the anti-SARS-CoV-2 antibodies of the present disclosure are provided in Table 2 herein.
本揭露內容之例示性抗體包括抗體S2E12及其經工程化變異體。經工程化S2E12變異體包括「抗體409_11_4_v2」、「抗體409_11_4_v3」、「抗體409_11_4_v4」、「抗體409_11_4_v5」、「抗體409_11_4_v6」、「抗體409_11_4_v7」、「抗體409_11_4_v8」、「抗體409_11_4_v9」、「抗體409_11_4_v10」、「抗體409_11_4_v11」、「抗體409_11_4_v12」、「抗體409_11_4_v13」。在特定實施例中,抗體或抗原結合片段包含選自表1中所提供之CDRH1、CDRH2、CDRH3、CDRL1、CDRL2或CDRL3胺基酸序列(分別)中之任一者的CDRH1、CDRH2、CDRH3、CDRL1、CDRL2及/或CDRL3。表1亦提供胺基酸序列,其包含S2E12 CDRH3序列及在S2E12中緊鄰CDRH3之N端的二個胺基酸(Ala-Ser)。Exemplary antibodies of the present disclosure include antibody S2E12 and engineered variants thereof. The engineered S2E12 variant includes "antibody 409_11_4_v2", "antibody 409_11_4_v3", "antibody 409_11_4_v4", "antibody 409_11_4_v5", "antibody 409_11_4_v6", "antibody 409_11_4_v7", "antibody 409_11_4_v8", "antibody 409_11_4_v8", "antibody 409_11_v8" ", "Antibody 409_11_4_v11", "Antibody 409_11_4_v12", "Antibody 409_11_4_v13". In particular embodiments, the antibody or antigen-binding fragment comprises a CDRH1, CDRH2, CDRH3, CDRH1, CDRH2, CDRH3, CDRH1, CDRH2, CDRH3, CDRL1, CDRL2 and/or CDRL3. Table 1 also provides amino acid sequences comprising the S2E12 CDRH3 sequence and the two amino acids (Ala-Ser) immediately N-terminal to CDRH3 in S2E12.
在一些實施例中,抗體或抗原結合片段包含:SEQ ID NO.:399、748、749、750、752、754、756、758、759及761中之任一者中所闡述之VH胺基酸序列的CDRH1、CDRH2及/或CDRH3;及SEQ ID NO.:403、738、744及746中之任一者中所闡述之VL胺基酸序列的CDRL1、CDRL2及/或CDRL3 (亦即,根據此項技術中已知之任何CDR編號或確定方法,諸如IMGT、Kabat、Chothia、AHo、North、Contact、CCG、EU或Martin (Enhanced Chothia))。舉例而言,在一些實施例中,抗體或抗原結合片段包含SEQ ID NO.:399中所闡述之VH胺基酸序列的CDRH1、CDRH2及/或CDRH3,及SEQ ID NO.:738中所闡述之VL胺基酸序列的CDRL1、CDRL2及/或CDRL3,其中該等CDR係根據IMGT。作為另一非限制性實例,在一些實施例中,抗體或抗原結合片段包含SEQ ID NO.:399中所闡述之VH胺基酸序列之CDRH1、CDRH2及CDRH3,及SEQ ID NO.:738中所闡述之VL胺基酸序列之CDRL1、CDRL2及CDRL3,其中該等CDR根據IMGT。In some embodiments, the antibody or antigen-binding fragment comprises: the VH amino acid set forth in any one of SEQ ID NO.: 399, 748, 749, 750, 752, 754, 756, 758, 759, and 761 CDRH1, CDRH2 and/or CDRH3 of the sequence; and CDRL1, CDRL2 and/or CDRL3 of the VL amino acid sequence set forth in any one of SEQ ID NO.:403, 738, 744 and 746 (that is, according to Any CDR numbering or determination method known in the art, such as IMGT, Kabat, Chothia, AHo, North, Contact, CCG, EU or Martin (Enhanced Chothia)). For example, in some embodiments, the antibody or antigen-binding fragment comprises CDRH1, CDRH2, and/or CDRH3 of the VH amino acid sequence set forth in SEQ ID NO.:399, and set forth in SEQ ID NO.:738 CDRL1, CDRL2 and/or CDRL3 of the VL amino acid sequence, wherein these CDRs are according to IMGT. As another non-limiting example, in some embodiments, the antibody or antigen-binding fragment comprises CDRH1, CDRH2, and CDRH3 of the VH amino acid sequence set forth in SEQ ID NO.:399, and in SEQ ID NO.:738 CDRL1, CDRL2 and CDRL3 of the VL amino acid sequence described, wherein these CDRs are according to IMGT.
在其他實施例中,抗體或抗原結合片段包含與表1中所提供之VH胺基酸序列具有至少85% (例如,85%、86、87、88、89、90、91、92、93、94、95、96、97、98、99或100%)之一致性的VH,及/或與表1中所提供之VL胺基酸序列具有至少85% (例如,85%、86、87、88、89、90、91、92、93、94、95、96、97、98、99或100%)之一致性的VL。在又其他實施例中,抗體或抗原結合片段包含與表1中所提供之VH胺基酸序列具有至少90%之一致性的VH及/或與表1中所提供之VL胺基酸序列具有至少90%之一致性的VL。在又其他實施例中,抗體或抗原結合片段包含與表1中所提供之VH胺基酸序列具有至少95%之一致性的VH及/或與表1中所提供之VL胺基酸序列具有至少95%之一致性的VL。在又其他實施例中,抗體或抗原結合片段包含與表1中所提供之VH胺基酸序列具有至少99%之一致性的VH及/或與表1中所提供之VL胺基酸序列具有至少99%之一致性的VL。在一些實施例中,抗體或抗原結合片段包含選自表1中所提供之VH胺基酸序列的VH胺基酸序列及選自表1中所提供之VL胺基酸序列的VL胺基酸序列。在一些實施例中,S2E12抗體包含κ輕鏈,例如k1m3、IGKC*01。表1 . 某些 S2E12 抗體之CDR ( IMGT ) 及可變區胺基酸序列
在一些實施例中,一種抗體或其抗原結合片段包含重鏈可變域(VH)及輕鏈可變域(VL),該重鏈可變域(VH)包含互補決定區(CDR)H1、CDRH2及CDRH3,且該輕鏈可變域(VL)包含CDRL1、CDRL2及CDRL3,其中CDRH1、CDRH2、CDRH3、CDRL1、CDRL2及CDRL3包含或由以下中所闡述之胺基酸序列組成:(a)分別為SEQ ID NO.:400、401、766、404、405及406;(b)分別為SEQ ID NO.:400、401、769、404、405及406;(c)分別為SEQ ID NO.:400、401、770、404、405及406;(d)分別為SEQ ID NO.:400、401、771、404、405及406;(e)分別為SEQ ID NO.:400、401、772、404、405及406;(f)分別為SEQ ID NO.:400、401、773、404、405及406;(g)分別為SEQ ID NO.:400、401、766、404、405及745;(h)分別為SEQ ID NO.:400、401、769、404、405及745;(i)分別為SEQ ID NO.:400、401、770、404、405及745;(j)分別為SEQ ID NO.:400、401、771、404、405及745;(k)分別為SEQ ID NO.:400、401、772、404、405及745;(l)分別為SEQ ID NO.: 400、401、773、405、405及745;(m)分別為SEQ ID NO.:400、401、766、404、405及747;(n)分別為SEQ ID NO.:400、401、769、404、405及747;(o)分別為SEQ ID NO.:400、401、770、404、405及747;(p)分別為SEQ ID NO.:400、401、771、404、405及747;(q)分別為SEQ ID NO.:400、401、772、404、405及747;或(r)分別為SEQ ID NO.:400、401、773、404、405及747。In some embodiments, an antibody or antigen-binding fragment thereof comprises a heavy chain variable domain (VH) and a light chain variable domain (VL), the heavy chain variable domain (VH) comprising a complementarity determining region (CDR) H1, CDRH2 and CDRH3, and the light chain variable domain (VL) comprises CDRL1, CDRL2 and CDRL3, wherein CDRH1, CDRH2, CDRH3, CDRL1, CDRL2 and CDRL3 comprise or consist of the amino acid sequences set forth in (a) SEQ ID NO.: 400, 401, 766, 404, 405 and 406 respectively; (b) SEQ ID NO.: 400, 401, 769, 404, 405 and 406 respectively; (c) SEQ ID NO. : 400, 401, 770, 404, 405 and 406; (d) respectively SEQ ID NO.: 400, 401, 771, 404, 405 and 406; (e) respectively SEQ ID NO.: 400, 401, 772 , 404, 405 and 406; (f) are SEQ ID NO.: 400, 401, 773, 404, 405 and 406, respectively; (g) are SEQ ID NO.: 400, 401, 766, 404, 405 and 745, respectively (h) are respectively SEQ ID NO.: 400, 401, 769, 404, 405 and 745; (i) are respectively SEQ ID NO.: 400, 401, 770, 404, 405 and 745; (j) are respectively SEQ ID NO.: 400, 401, 771, 404, 405 and 745; (k) respectively SEQ ID NO.: 400, 401, 772, 404, 405 and 745; (l) respectively SEQ ID NO.: 400 , 401, 773, 405, 405 and 745; (m) are respectively SEQ ID NO.: 400, 401, 766, 404, 405 and 747; (n) are respectively SEQ ID NO.: 400, 401, 769, 404 , 405 and 747; (o) are SEQ ID NO.: 400, 401, 770, 404, 405 and 747, respectively; (p) are SEQ ID NO.: 400, 401, 771, 404, 405 and 747, respectively; ( q) is SEQ ID NO.: 400, 401, 772, 404, 405 and 747, respectively; or (r) is SEQ ID NO.: 400, 401, 773, 404, 405 and 747, respectively.
在其他實施例中,抗體或抗原結合片段包含以下中所闡述之胺基酸序列:(a) SEQ ID NO.:400、401、402、404、405及406;(b) SEQ ID NO.:400、401、751、404、405及406;(c) SEQ ID NO.:400、401、753、404、405及406;(d) SEQ ID NO.:400、401、755、404、405及406;(e) SEQ ID NO.:400、401、757、404、405及406;(f) SEQ ID NO.:400、401、760、404、405及406;(g) SEQ ID NO.:400、401、402、404、405及745;(h) SEQ ID NO.:400、401、751、404、405及745;(i) SEQ ID NO.:400、401、753、404、405及745;(j) SEQ ID NO.:400、401、755、404、405及745;(k) SEQ ID NO.:400、401、757、404、405及745;(l) SEQ ID NO.: 400、401、760、405、405及745;(m) SEQ ID NO.:400、401、402、404、405及747;(n) SEQ ID NO.:400、401、751、404、405及747;(o) SEQ ID NO.:400、401、753、404、405及747;(p) SEQ ID NO.:400、401、755、404、405及747;(q) SEQ ID NO.:400、401、757、404、405及747;或(r) SEQ ID NO.:400、401、760、404、405及747。在以上(a)-(r)中之每一者中,應理解前三個所述SEQ ID NO為VH胺基酸序列,且後三個所述SEQ ID NO為VL胺基酸序列。舉例而言,在(a)中,SEQ ID NO.:400、401及402為VH中之胺基酸序列,且SEQ ID NO.:404、405及406為VL中之胺基酸序列。In other embodiments, the antibody or antigen-binding fragment comprises the amino acid sequences set forth in: (a) SEQ ID NO.: 400, 401, 402, 404, 405, and 406; (b) SEQ ID NO.: 400, 401, 751, 404, 405 and 406; (c) SEQ ID NO.: 400, 401, 753, 404, 405 and 406; (d) SEQ ID NO.: 400, 401, 755, 404, 405 and 406; (e) SEQ ID NO.: 400, 401, 757, 404, 405 and 406; (f) SEQ ID NO.: 400, 401, 760, 404, 405 and 406; (g) SEQ ID NO.: 400, 401, 402, 404, 405 and 745; (h) SEQ ID NO.: 400, 401, 751, 404, 405 and 745; (i) SEQ ID NO.: 400, 401, 753, 404, 405 and 745; (j) SEQ ID NO.: 400, 401, 755, 404, 405 and 745; (k) SEQ ID NO.: 400, 401, 757, 404, 405 and 745; (l) SEQ ID NO.: 400, 401, 760, 405, 405 and 745; (m) SEQ ID NO.: 400, 401, 402, 404, 405 and 747; (n) SEQ ID NO.: 400, 401, 751, 404, 405 and 747; (o) SEQ ID NO.: 400, 401, 753, 404, 405 and 747; (p) SEQ ID NO.: 400, 401, 755, 404, 405 and 747; (q) SEQ ID NO.: 400, 401, 757, 404, 405 and 747; or (r) SEQ ID NO.: 400, 401, 760, 404, 405 and 747. In each of (a)-(r) above, it is understood that the first three such SEQ ID NOs are VH amino acid sequences and the last three such SEQ ID NOs are VL amino acid sequences. For example, in (a), SEQ ID NO.: 400, 401 and 402 are the amino acid sequences in VH, and SEQ ID NO.: 404, 405 and 406 are the amino acid sequences in VL.
其他例示性抗體包括S2M11、S2D106、S2H58及其經工程化變異體。在一些實施例中,抗體或抗原結合片段包含如分別SEQ ID NO.:525-527及529-531中所闡述之CDRH1、CDRH2、CDRH3、CDRL1、CDRL2及CDRL3胺基酸序列。在其他實施例中,抗體或抗原結合片段包含VH及VL,該VH具有至少80%、至少85%、至少90%、至少95%、至少97%、至少99%或包含或由SEQ ID NO.:524中所闡述之胺基酸序列組成,且該VL具有至少80%、至少85%、至少90%、至少95%、至少97%、至少99%或包含或由SEQ ID NO.:528中所闡述之胺基酸序列組成。Other exemplary antibodies include S2M11, S2D106, S2H58 and engineered variants thereof. In some embodiments, the antibody or antigen-binding fragment comprises the CDRH1, CDRH2, CDRH3, CDRL1, CDRL2, and CDRL3 amino acid sequences as set forth in SEQ ID NOs.: 525-527 and 529-531, respectively. In other embodiments, the antibody or antigen-binding fragment comprises a VH and a VL having at least 80%, at least 85%, at least 90%, at least 95%, at least 97%, at least 99%, or comprising or consisting of SEQ ID NO. : consists of the amino acid sequence set forth in SEQ ID NO.: 524, and the VL has at least 80%, at least 85%, at least 90%, at least 95%, at least 97%, at least 99% or comprises or consists of SEQ ID NO.: 528 The amino acid sequence composition described.
在其他實施例中,抗體或抗原結合片段包含如分別SEQ ID NO.: 585、586、587、589、590及591中所闡述,或如分別SEQ ID NO.:585、625、627、589、590及591中所闡述之CDRH1、CDRH2、CDRH3、CDRL1、CDRL2及CDRL3胺基酸序列。在其他實施例中,抗體或抗原結合片段包含VH及VL,該VH具有至少80%、至少85%、至少90%、至少95%、至少97%、至少99%或包含或由SEQ ID NO.:584、624、626及628中之任一者中所闡述之胺基酸序列組成,且該VL具有至少80%、至少85%、至少90%、至少95%、至少97%、至少99%或包含或由SEQ ID NO.:588中所闡述之胺基酸序列組成。在其他實施例中,抗體或抗原結合片段包含如分別SEQ ID NO.: 229、230、231、233、234及235中所闡述之CDRH1、CDRH2、CDRH3、CDRL1、CDRL2及CDRL3胺基酸序列。在其他實施例中,抗體或抗原結合片段包含VH及VL,該VH具有至少80%、至少85%、至少90%、至少95%、至少97%、至少99%或包含或由SEQ ID NO.:228、740、741、742及743中之任一者中所闡述之胺基酸序列組成,且該VL具有至少80%、至少85%、至少90%、至少95%、至少97%、至少99%或包含或由SEQ ID NO.:232中所闡述之胺基酸序列組成。在其他實施例中,抗體或抗原結合片段包含VH及VL,該VH具有至少80%、至少85%、至少90%、至少95%、至少97%、至少99%或包含或由SEQ ID NO.:228、740、741、742及743中之任一者中所闡述之胺基酸序列組成,且該VL具有至少80%、至少85%、至少90%、至少95%、至少97%、至少99%或包含或由SEQ ID NO.:238中所闡述之胺基酸序列組成。In other embodiments, the antibody or antigen-binding fragment comprises as set forth in SEQ ID NO.: 585, 586, 587, 589, 590, and 591, respectively, or as set forth in SEQ ID NO.: 585, 625, 627, 589, respectively, CDRH1, CDRH2, CDRH3, CDRL1, CDRL2 and CDRL3 amino acid sequences set forth in 590 and 591. In other embodiments, the antibody or antigen-binding fragment comprises a VH and a VL having at least 80%, at least 85%, at least 90%, at least 95%, at least 97%, at least 99%, or comprising or consisting of SEQ ID NO. : the amino acid sequence composition set forth in any one of 584, 624, 626, and 628, and the VL has at least 80%, at least 85%, at least 90%, at least 95%, at least 97%, at least 99% Either comprise or consist of the amino acid sequence set forth in SEQ ID NO.:588. In other embodiments, the antibody or antigen-binding fragment comprises the CDRH1, CDRH2, CDRH3, CDRL1, CDRL2, and CDRL3 amino acid sequences as set forth in SEQ ID NO.: 229, 230, 231, 233, 234, and 235, respectively. In other embodiments, the antibody or antigen-binding fragment comprises a VH and a VL having at least 80%, at least 85%, at least 90%, at least 95%, at least 97%, at least 99%, or comprising or consisting of SEQ ID NO. : the amino acid sequence composition set forth in any one of 228, 740, 741, 742, and 743, and the VL has at least 80%, at least 85%, at least 90%, at least 95%, at least 97%, at least 99% either comprise or consist of the amino acid sequence set forth in SEQ ID NO.:232. In other embodiments, the antibody or antigen-binding fragment comprises a VH and a VL having at least 80%, at least 85%, at least 90%, at least 95%, at least 97%, at least 99%, or comprising or consisting of SEQ ID NO. : the amino acid sequence composition set forth in any one of 228, 740, 741, 742, and 743, and the VL has at least 80%, at least 85%, at least 90%, at least 95%, at least 97%, at least 99% either comprise or consist of the amino acid sequence set forth in SEQ ID NO.:238.
在某些實施例中,抗體或抗原結合片段包含胺基酸修飾(例如,取代突變)以消除氧化、去醯胺及/或異構化之不良風險。In certain embodiments, the antibody or antigen-binding fragment comprises amino acid modifications (eg, substitution mutations) to eliminate the undesirable risks of oxidation, desamidation, and/or isomerization.
本發明提供之變異體抗體包括與具有特異性序列之本發明所揭露之抗體相比在可變區(例如,VH、VL、骨架或CDR)中包含一或多個胺基酸改變之變異體抗體,其中該變異體抗體能夠結合至SARS-CoV-2抗原。Variant antibodies provided herein include variants comprising one or more amino acid changes in variable regions (eg, VH, VL, backbone, or CDRs) compared to antibodies disclosed herein having specific sequences antibody, wherein the variant antibody is capable of binding to the SARS-CoV-2 antigen.
在某些實施例中,該VH包含與根據以下中之任一者之胺基酸序列具有至少85% (例如,具有85%、86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99%或100%)之一致性的胺基酸序列或由其組成:SEQ ID NO.: 22、32、42、52、62、72、74、84、96、106、119、129、139、150、163、173、175、178、186、189、191、198、208、218、228、240、254、264、274、284、298、312、322、332、350、351、353、359、361、363、365、367、368、369、379、389、399、409、419、429、434、444、454、464、474、484、494、504、514、524、534、544、554、564、574、584、594、604、614、624、626、628、630、634、636、638、640、642、644、646、648、650、652、654、656、658、660、662、664、666、668、670、672、674、676、678、680、682、684、692、740、741、742、743、748、749、750、752、754、756、758、759、761、762及765,其中該變化任擇地限於一或多個骨架區及/或該變化包含對經生殖系編碼之胺基酸之一或多個取代;及/或(ii)該VL包含與根據以下中之任一者之胺基酸序列具有至少85% (例如,具有85%、86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99%或100%)之一致性的胺基酸序列或由其組成:SEQ ID NO.: 26、36、46、56、66、78、88、94、100、110、123、133、143、154、157、168、194、196、202、212、222、232、238、244、250、252、258、268、278、288、294、296、302、308、310、316、326、336、355、357、373、383、393、403、413、423、438、448、458、468、478、488、498、508、518、528、538、548、558、568、578、588、598、608、618、686、696、738、744及746,其中該變化任擇地限於一或多個骨架區及/或該變化包含對經生殖系編碼之胺基酸之一或多個取代。In certain embodiments, the VH comprises at least 85% (eg, 85%, 86%, 87%, 88%, 89%, 90%, 91%) with an amino acid sequence according to any of the following %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100%) identical amino acid sequences or consist of: SEQ ID NO.: 22, 32 , 42, 52, 62, 72, 74, 84, 96, 106, 119, 129, 139, 150, 163, 173, 175, 178, 186, 189, 191, 198, 208, 218, 228, 240, 254 , 264, 274, 284, 298, 312, 322, 332, 350, 351, 353, 359, 361, 363, 365, 367, 368, 369, 379, 389, 399, 409, 419, 429, 434, 444 , 454, 464, 474, 484, 494, 504, 514, 524, 534, 544, 554, 564, 574, 584, 594, 604, 614, 624, 626, 628, 630, 634, 636, 638, 640 , 642, 644, 646, 648, 650, 652, 654, 656, 658, 660, 662, 664, 666, 668, 670, 672, 674, 676, 678, 680, 682, 684, 692, 740, 741 , 742, 743, 748, 749, 750, 752, 754, 756, 758, 759, 761, 762, and 765, wherein the change is optionally limited to one or more framework regions and/or the change comprises One or more substitutions of the encoded amino acid; and/or (ii) the VL comprises at least 85% (e.g., 85%, 86%, 87%) with the amino acid sequence according to any of the following , 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100%) identical amino acid sequences or from Its composition: SEQ ID NO.: 26, 36, 46, 56, 66, 78, 88, 94, 100, 110, 123, 133, 143, 154, 157, 168, 194, 196, 202, 212, 222, 232, 238, 244, 250, 252, 258, 268, 278, 288, 294, 296, 302, 308, 310, 316, 326, 336, 355, 357, 373, 383, 393, 403, 413, 423, 438, 448, 458, 468, 478, 488, 498, 508, 518, 528, 538, 548, 558, 568, 57 8, 588, 598, 608, 618, 686, 696, 738, 744 and 746, wherein the change is optionally limited to one or more framework regions and/or the change comprises one of the amino acids encoded by the germline or multiple substitutions.
在其他實施例中,該VH與SEQ ID NO.:399、748、749、750、752、754、756、758、759及761中之任一者中所闡述之胺基酸序列具有至少85% (例如,具有85%、86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99%或100%)之一致性,且該VL與SEQ ID NO.:403、738、744及746中之任一者中所闡述之胺基酸序列具有至少85% (例如,具有85%、86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99%或100%)之一致性。In other embodiments, the VH has at least 85% of the amino acid sequence set forth in any one of SEQ ID NO.: 399, 748, 749, 750, 752, 754, 756, 758, 759, and 761 (For example, with 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100 %) identity, and the VL has at least 85% (e.g., has 85%, 86%, 87%) with the amino acid sequence set forth in any one of SEQ ID NO. %, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100%).
在其他實施例中,該VH與SEQ ID NO.:399、748、749、750、752、754、756、758、759及761中之任一者中所闡述之胺基酸序列具有至少85% (例如,具有85%、86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99%或100%)之一致性,且該VL與SEQ ID NO.:403中所闡述之胺基酸序列具有至少85% (例如,具有85%、86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99%或100%)之一致性。In other embodiments, the VH has at least 85% of the amino acid sequence set forth in any one of SEQ ID NO.: 399, 748, 749, 750, 752, 754, 756, 758, 759, and 761 (For example, with 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100 %), and the VL has at least 85% (e.g., 85%, 86%, 87%, 88%, 89%, 90%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100%) consistency.
在其他實施例中,該VH與SEQ ID NO.:399、748、749、750、752、754、756、758、759及761中之任一者中所闡述之胺基酸序列具有至少85% (例如,具有85%、86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99%或100%)之一致性,且該VL與SEQ ID NO.:738中所闡述之胺基酸序列具有至少85% (例如,具有85%、86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99%或100%)之一致性。In other embodiments, the VH has at least 85% of the amino acid sequence set forth in any one of SEQ ID NO.: 399, 748, 749, 750, 752, 754, 756, 758, 759, and 761 (For example, with 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100 %), and the VL has at least 85% (e.g., 85%, 86%, 87%, 88%, 89%, 90%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100%) consistency.
在其他實施例中,該VH與SEQ ID NO.:399、748、749、750、752、754、756、758、759及761中之任一者中所闡述之胺基酸序列具有至少85% (例如,具有85%、86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99%或100%)之一致性,且該VL與SEQ ID NO.:744中所闡述之胺基酸序列具有至少85% (例如,具有85%、86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99%或100%)之一致性。In other embodiments, the VH has at least 85% of the amino acid sequence set forth in any one of SEQ ID NO.: 399, 748, 749, 750, 752, 754, 756, 758, 759, and 761 (For example, with 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100 %), and the VL has at least 85% (e.g., 85%, 86%, 87%, 88%, 89%, 90%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100%) consistency.
在其他實施例中,該VH與SEQ ID NO.:399、748、749、750、752、754、756、758、759及761中之任一者中所闡述之胺基酸序列具有至少85% (例如,具有85%、86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99%或100%)之一致性,且該VL與SEQ ID NO.:746中所闡述之胺基酸序列具有至少85% (例如,具有85%、86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99%或100%)之一致性。In other embodiments, the VH has at least 85% of the amino acid sequence set forth in any one of SEQ ID NO.: 399, 748, 749, 750, 752, 754, 756, 758, 759, and 761 (For example, with 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100 %), and the VL has at least 85% (e.g., 85%, 86%, 87%, 88%, 89%, 90%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100%) consistency.
在一些實施例中,該VH包含SEQ ID NO.:399中所闡述之胺基酸序列或由其組成,且該VL包含SEQ ID NO.:403中所闡述之胺基酸序列或由其組成。在一些實施例中,該VH包含SEQ ID NO.:399中所闡述之胺基酸序列或由其組成,且該VL包含SEQ ID NO.:738中所闡述之胺基酸序列或由其組成。在一些實施例中,該VH包含SEQ ID NO.:399中所闡述之胺基酸序列或由其組成,且該VL包含SEQ ID NO.:744中所闡述之胺基酸序列或由其組成。在一些實施例中,該VH包含SEQ ID NO.:399中所闡述之胺基酸序列或由其組成,且該VL包含SEQ ID NO.:746中所闡述之胺基酸序列或由其組成。In some embodiments, the VH comprises or consists of the amino acid sequence set forth in SEQ ID NO.:399, and the VL comprises or consists of the amino acid sequence set forth in SEQ ID NO.:403 . In some embodiments, the VH comprises or consists of the amino acid sequence set forth in SEQ ID NO.:399, and the VL comprises or consists of the amino acid sequence set forth in SEQ ID NO.:738 . In some embodiments, the VH comprises or consists of the amino acid sequence set forth in SEQ ID NO.:399, and the VL comprises or consists of the amino acid sequence set forth in SEQ ID NO.:744 . In some embodiments, the VH comprises or consists of the amino acid sequence set forth in SEQ ID NO.:399, and the VL comprises or consists of the amino acid sequence set forth in SEQ ID NO.:746 .
在一些實施例中,該VH包含SEQ ID NO.:748中所闡述之胺基酸序列或由其組成,且該VL包含SEQ ID NO.:403中所闡述之胺基酸序列或由其組成。在一些實施例中,該VH包含SEQ ID NO.:748中所闡述之胺基酸序列或由其組成,且該VL包含SEQ ID NO.:738中所闡述之胺基酸序列或由其組成。在一些實施例中,該VH包含SEQ ID NO.:748中所闡述之胺基酸序列或由其組成,且該VL包含SEQ ID NO.:744中所闡述之胺基酸序列或由其組成。在一些實施例中,該VH包含SEQ ID NO.:748中所闡述之胺基酸序列或由其組成,且該VL包含SEQ ID NO.:746中所闡述之胺基酸序列或由其組成。In some embodiments, the VH comprises or consists of the amino acid sequence set forth in SEQ ID NO.:748, and the VL comprises or consists of the amino acid sequence set forth in SEQ ID NO.:403 . In some embodiments, the VH comprises or consists of the amino acid sequence set forth in SEQ ID NO.:748, and the VL comprises or consists of the amino acid sequence set forth in SEQ ID NO.:738 . In some embodiments, the VH comprises or consists of the amino acid sequence set forth in SEQ ID NO.:748, and the VL comprises or consists of the amino acid sequence set forth in SEQ ID NO.:744 . In some embodiments, the VH comprises or consists of the amino acid sequence set forth in SEQ ID NO.:748, and the VL comprises or consists of the amino acid sequence set forth in SEQ ID NO.:746 .
在一些實施例中,該VH包含SEQ ID NO.:749中所闡述之胺基酸序列或由其組成,且該VL包含SEQ ID NO.:403中所闡述之胺基酸序列或由其組成。在一些實施例中,該VH包含SEQ ID NO.:749中所闡述之胺基酸序列或由其組成,且該VL包含SEQ ID NO.:738中所闡述之胺基酸序列或由其組成。在一些實施例中,該VH包含SEQ ID NO.:749中所闡述之胺基酸序列或由其組成,且該VL包含SEQ ID NO.:744中所闡述之胺基酸序列或由其組成。在一些實施例中,該VH包含SEQ ID NO.:749中所闡述之胺基酸序列或由其組成,且該VL包含SEQ ID NO.:746中所闡述之胺基酸序列或由其組成。In some embodiments, the VH comprises or consists of the amino acid sequence set forth in SEQ ID NO.:749, and the VL comprises or consists of the amino acid sequence set forth in SEQ ID NO.:403 . In some embodiments, the VH comprises or consists of the amino acid sequence set forth in SEQ ID NO.:749, and the VL comprises or consists of the amino acid sequence set forth in SEQ ID NO.:738 . In some embodiments, the VH comprises or consists of the amino acid sequence set forth in SEQ ID NO.:749, and the VL comprises or consists of the amino acid sequence set forth in SEQ ID NO.:744 . In some embodiments, the VH comprises or consists of the amino acid sequence set forth in SEQ ID NO.:749, and the VL comprises or consists of the amino acid sequence set forth in SEQ ID NO.:746 .
在一些實施例中,該VH包含SEQ ID NO.:750中所闡述之胺基酸序列或由其組成,且該VL包含SEQ ID NO.:403中所闡述之胺基酸序列或由其組成。在一些實施例中,該VH包含SEQ ID NO.:750中所闡述之胺基酸序列或由其組成,且該VL包含SEQ ID NO.:738中所闡述之胺基酸序列或由其組成。在一些實施例中,該VH包含SEQ ID NO.:750中所闡述之胺基酸序列或由其組成,且該VL包含SEQ ID NO.:744中所闡述之胺基酸序列或由其組成。在一些實施例中,該VH包含SEQ ID NO.:750中所闡述之胺基酸序列或由其組成,且該VL包含SEQ ID NO.:746中所闡述之胺基酸序列或由其組成。In some embodiments, the VH comprises or consists of the amino acid sequence set forth in SEQ ID NO.:750, and the VL comprises or consists of the amino acid sequence set forth in SEQ ID NO.:403 . In some embodiments, the VH comprises or consists of the amino acid sequence set forth in SEQ ID NO.:750, and the VL comprises or consists of the amino acid sequence set forth in SEQ ID NO.:738 . In some embodiments, the VH comprises or consists of the amino acid sequence set forth in SEQ ID NO.:750, and the VL comprises or consists of the amino acid sequence set forth in SEQ ID NO.:744 . In some embodiments, the VH comprises or consists of the amino acid sequence set forth in SEQ ID NO.:750, and the VL comprises or consists of the amino acid sequence set forth in SEQ ID NO.:746 .
在一些實施例中,該VH包含SEQ ID NO.:750中所闡述之胺基酸序列或由其組成,且該VL包含SEQ ID NO.:403中所闡述之胺基酸序列或由其組成。在一些實施例中,該VH包含SEQ ID NO.:752中所闡述之胺基酸序列或由其組成,且該VL包含SEQ ID NO.:738中所闡述之胺基酸序列或由其組成。在一些實施例中,該VH包含SEQ ID NO.:752中所闡述之胺基酸序列或由其組成,且該VL包含SEQ ID NO.:744中所闡述之胺基酸序列或由其組成。在一些實施例中,該VH包含SEQ ID NO.:752中所闡述之胺基酸序列或由其組成,且該VL包含SEQ ID NO.:746中所闡述之胺基酸序列或由其組成。In some embodiments, the VH comprises or consists of the amino acid sequence set forth in SEQ ID NO.:750, and the VL comprises or consists of the amino acid sequence set forth in SEQ ID NO.:403 . In some embodiments, the VH comprises or consists of the amino acid sequence set forth in SEQ ID NO.:752, and the VL comprises or consists of the amino acid sequence set forth in SEQ ID NO.:738 . In some embodiments, the VH comprises or consists of the amino acid sequence set forth in SEQ ID NO.:752, and the VL comprises or consists of the amino acid sequence set forth in SEQ ID NO.:744 . In some embodiments, the VH comprises or consists of the amino acid sequence set forth in SEQ ID NO.:752, and the VL comprises or consists of the amino acid sequence set forth in SEQ ID NO.:746 .
在一些實施例中,該VH包含SEQ ID NO.:754中所闡述之胺基酸序列或由其組成,且該VL包含SEQ ID NO.:403中所闡述之胺基酸序列或由其組成。在一些實施例中,該VH包含SEQ ID NO.:754中所闡述之胺基酸序列或由其組成,且該VL包含SEQ ID NO.:738中所闡述之胺基酸序列或由其組成。在一些實施例中,該VH包含SEQ ID NO.:754中所闡述之胺基酸序列或由其組成,且該VL包含SEQ ID NO.:744中所闡述之胺基酸序列或由其組成。在一些實施例中,該VH包含SEQ ID NO.:754中所闡述之胺基酸序列或由其組成,且該VL包含SEQ ID NO.:746中所闡述之胺基酸序列或由其組成。In some embodiments, the VH comprises or consists of the amino acid sequence set forth in SEQ ID NO.:754, and the VL comprises or consists of the amino acid sequence set forth in SEQ ID NO.:403 . In some embodiments, the VH comprises or consists of the amino acid sequence set forth in SEQ ID NO.:754, and the VL comprises or consists of the amino acid sequence set forth in SEQ ID NO.:738 . In some embodiments, the VH comprises or consists of the amino acid sequence set forth in SEQ ID NO.:754, and the VL comprises or consists of the amino acid sequence set forth in SEQ ID NO.:744 . In some embodiments, the VH comprises or consists of the amino acid sequence set forth in SEQ ID NO.:754, and the VL comprises or consists of the amino acid sequence set forth in SEQ ID NO.:746 .
在一些實施例中,該VH包含SEQ ID NO.:756中所闡述之胺基酸序列或由其組成,且該VL包含SEQ ID NO.:403中所闡述之胺基酸序列或由其組成。在一些實施例中,該VH包含SEQ ID NO.:756中所闡述之胺基酸序列或由其組成,且該VL包含SEQ ID NO.:738中所闡述之胺基酸序列或由其組成。在一些實施例中,該VH包含SEQ ID NO.:756中所闡述之胺基酸序列或由其組成,且該VL包含SEQ ID NO.:744中所闡述之胺基酸序列或由其組成。在一些實施例中,該VH包含SEQ ID NO.:756中所闡述之胺基酸序列或由其組成,且該VL包含SEQ ID NO.:746中所闡述之胺基酸序列或由其組成。In some embodiments, the VH comprises or consists of the amino acid sequence set forth in SEQ ID NO.:756, and the VL comprises or consists of the amino acid sequence set forth in SEQ ID NO.:403 . In some embodiments, the VH comprises or consists of the amino acid sequence set forth in SEQ ID NO.:756, and the VL comprises or consists of the amino acid sequence set forth in SEQ ID NO.:738 . In some embodiments, the VH comprises or consists of the amino acid sequence set forth in SEQ ID NO.:756, and the VL comprises or consists of the amino acid sequence set forth in SEQ ID NO.:744 . In some embodiments, the VH comprises or consists of the amino acid sequence set forth in SEQ ID NO.:756, and the VL comprises or consists of the amino acid sequence set forth in SEQ ID NO.:746 .
在一些實施例中,該VH包含SEQ ID NO.:758中所闡述之胺基酸序列或由其組成,且該VL包含SEQ ID NO.:403中所闡述之胺基酸序列或由其組成。在一些實施例中,該VH包含SEQ ID NO.:758中所闡述之胺基酸序列或由其組成,且該VL包含SEQ ID NO.:738中所闡述之胺基酸序列或由其組成。在一些實施例中,該VH包含SEQ ID NO.:758中所闡述之胺基酸序列或由其組成,且該VL包含SEQ ID NO.:744中所闡述之胺基酸序列或由其組成。在一些實施例中,該VH包含SEQ ID NO.:758中所闡述之胺基酸序列或由其組成,且該VL包含SEQ ID NO.:746中所闡述之胺基酸序列或由其組成。In some embodiments, the VH comprises or consists of the amino acid sequence set forth in SEQ ID NO.:758, and the VL comprises or consists of the amino acid sequence set forth in SEQ ID NO.:403 . In some embodiments, the VH comprises or consists of the amino acid sequence set forth in SEQ ID NO.:758, and the VL comprises or consists of the amino acid sequence set forth in SEQ ID NO.:738 . In some embodiments, the VH comprises or consists of the amino acid sequence set forth in SEQ ID NO.:758, and the VL comprises or consists of the amino acid sequence set forth in SEQ ID NO.:744 . In some embodiments, the VH comprises or consists of the amino acid sequence set forth in SEQ ID NO.:758, and the VL comprises or consists of the amino acid sequence set forth in SEQ ID NO.:746 .
在一些實施例中,該VH包含SEQ ID NO.:759中所闡述之胺基酸序列或由其組成,且該VL包含SEQ ID NO.:403中所闡述之胺基酸序列或由其組成。在一些實施例中,該VH包含SEQ ID NO.:759中所闡述之胺基酸序列或由其組成,且該VL包含SEQ ID NO.:738中所闡述之胺基酸序列或由其組成。在一些實施例中,該VH包含SEQ ID NO.:759中所闡述之胺基酸序列或由其組成,且該VL包含SEQ ID NO.:744中所闡述之胺基酸序列或由其組成。在一些實施例中,該VH包含SEQ ID NO.:759中所闡述之胺基酸序列或由其組成,且該VL包含SEQ ID NO.:746中所闡述之胺基酸序列或由其組成。In some embodiments, the VH comprises or consists of the amino acid sequence set forth in SEQ ID NO.:759, and the VL comprises or consists of the amino acid sequence set forth in SEQ ID NO.:403 . In some embodiments, the VH comprises or consists of the amino acid sequence set forth in SEQ ID NO.:759 and the VL comprises or consists of the amino acid sequence set forth in SEQ ID NO.:738 . In some embodiments, the VH comprises or consists of the amino acid sequence set forth in SEQ ID NO.:759, and the VL comprises or consists of the amino acid sequence set forth in SEQ ID NO.:744 . In some embodiments, the VH comprises or consists of the amino acid sequence set forth in SEQ ID NO.:759, and the VL comprises or consists of the amino acid sequence set forth in SEQ ID NO.:746 .
在一些實施例中,該VH包含SEQ ID NO.:761中所闡述之胺基酸序列或由其組成,且該VL包含SEQ ID NO.:403中所闡述之胺基酸序列或由其組成。在一些實施例中,該VH包含SEQ ID NO.:761中所闡述之胺基酸序列或由其組成,且該VL包含SEQ ID NO.:738中所闡述之胺基酸序列或由其組成。在一些實施例中,該VH包含SEQ ID NO.:761中所闡述之胺基酸序列或由其組成,且該VL包含SEQ ID NO.:744中所闡述之胺基酸序列或由其組成。在一些實施例中,該VH包含SEQ ID NO.:761中所闡述之胺基酸序列或由其組成,且該VL包含SEQ ID NO.:746中所闡述之胺基酸序列或由其組成。In some embodiments, the VH comprises or consists of the amino acid sequence set forth in SEQ ID NO.:761 and the VL comprises or consists of the amino acid sequence set forth in SEQ ID NO.:403 . In some embodiments, the VH comprises or consists of the amino acid sequence set forth in SEQ ID NO.:761 and the VL comprises or consists of the amino acid sequence set forth in SEQ ID NO.:738 . In some embodiments, the VH comprises or consists of the amino acid sequence set forth in SEQ ID NO.:761 and the VL comprises or consists of the amino acid sequence set forth in SEQ ID NO.:744 . In some embodiments, the VH comprises or consists of the amino acid sequence set forth in SEQ ID NO.:761 and the VL comprises or consists of the amino acid sequence set forth in SEQ ID NO.:746 .
在一些實施例中,該VH包含表2中所闡述之任何VH胺基酸序列或由其組成,且該VL包含表2中所闡述之任何VL胺基酸序列或由其組成。在特定實施例中,該VH及該VL包含或由根據以下之胺基酸序列組成:(i)分別為SEQ ID NO.: 22及26;(ii)分別為SEQ ID NO.: 32及36;(iii)分別為SEQ ID NO.: 42及46;(iv)分別為SEQ ID NO.: 52及56;(v)分別為SEQ ID NO.: 62及66;(vi)分別為SEQ ID NO.: 72及66;(vii)分別為SEQ ID NO.: 74及78;(viii)分別為SEQ ID NO.: 84及88;(ix)分別為SEQ ID NO.: 84及94;(x)分別為SEQ ID NO.: 96及100;(xi)分別為SEQ ID NO.: 106及110;(xii)分別為SEQ ID NO.: 119及123;(xiii)分別為SEQ ID NO.: 129及133;(xiv)分別為SEQ ID NO.: 22或150及26、154或157;(xv)分別為SEQ ID NO.: 42或163及46或168;(xvi)分別為SEQ ID NO.: 129、173、175或178中之任一者及133;(xvii)分別為SEQ ID NO.: 52、186、189或191中之任一者及56、194或196中之任一者;(xviii)分別為SEQ ID NO.: 198及202;(xix)分別為SEQ ID NO.: 208及212;(xx)分別為SEQ ID NO.: 218及222;(xxi)分別為SEQ ID NO.: 228及232或238;(xxii)分別為SEQ ID NO.: 240,及244、250或252中之任一者;(xxiii)分別為SEQ ID NO.: 254及258;(xxiv)分別為SEQ ID NO.: 264及268;(xxv)分別為SEQ ID NO.: 274及278;(xxvi)分別為SEQ ID NO.: 284,及288、294或296中之任一者;(xxvii)分別為SEQ ID NO.: 298,及302、308或310中之任一者;(xxviii)分別為SEQ ID NO.: 312及316;(xxix)分別為SEQ ID NO.: 322及326;(xxx)分別為SEQ ID NO.: 332及336,(xxxi)分別為SEQ ID NO.: 228、350、351或353中之任一者及232、238、355或357中之任一者;(xxxii)分別為SEQ ID NO.: 312、359、361、363、365、367或368中之任一者及316;(xxxiii)分別為SEQ ID NO.: 369及373;(xxxiv)分別為SEQ ID NO.: 379及383;(xxxv)分別為SEQ ID NO.: 389及393;(xxxvi)分別為SEQ ID NO.: 399及403或738;(xxxvii)分別為SEQ ID NO.: 409及413;(xxxviii)分別為SEQ ID NO.: 419及423;(xxxix)分別為SEQ ID NO.: 434及438;(xxxx)分別為SEQ ID NO.: 444及448;(xxxxi)分別為SEQ ID NO.: 454及458;(xxxxii)分別為SEQ ID NO.: 464及468;(xxxxiii)分別為SEQ ID NO.: 474及478;(xxxxiv)分別為SEQ ID NO.: 484及488;(xxxxv)分別為SEQ ID NO.: 494及498;(xxxxvi)分別為SEQ ID NO.: 504及508;(xxxxvii)分別為SEQ ID NO.: 514及518;(xxxxviii)分別為SEQ ID NO.: 524及528;(xxxxix)分別為SEQ ID NO.: 534及538;(xxxxx)分別為SEQ ID NO.: 544及548;(xxxxxi)分別為SEQ ID NO.: 554及558;(xxxxxii)分別為SEQ ID NO.: 564及568;(xxxxxiii)分別為SEQ ID NO.: 574及578;(xxxxxiv)分別為SEQ ID NO.: 584及588;(xxxxxv)分別為SEQ ID NO.: 594及598;(xxxxxvi)分別為SEQ ID NO.: 604及608;(xxxxxvii)分別為SEQ ID NO.: 614及618;(xxxxxviii)分別為SEQ ID NO.: 624、626或628及588;(xxxxxix)分別為SEQ ID NO.: 630、634、636、638、640、642、644、646、648、650、652、654、656、658、660、662、664、666、668、670、672、674、676、678、680、682或684及686;(xxxxxx)分別為SEQ ID NO.: 692及696;(xxxxxxi)分別為SEQ ID NO.: 740-743中之任一者及238;(xxxxxxii)分別為SEQ ID NO.: 399、748、749、750、752、754、756、758、759或761中之任一者及403、744或746中之任一者;或(xxxxxxiii)分別為SEQ ID NO.: 762或764及588。In some embodiments, the VH comprises or consists of any of the VH amino acid sequences set forth in Table 2, and the VL comprises or consists of any of the VL amino acid sequences set forth in Table 2. In particular embodiments, the VH and the VL comprise or consist of amino acid sequences according to: (i) SEQ ID NO.: 22 and 26, respectively; (ii) SEQ ID NO.: 32 and 36, respectively (iii) respectively SEQ ID NO.: 42 and 46; (iv) respectively SEQ ID NO.: 52 and 56; (v) respectively SEQ ID NO.: 62 and 66; (vi) respectively SEQ ID NO.: 72 and 66; (vii) respectively SEQ ID NO.: 74 and 78; (viii) respectively SEQ ID NO.: 84 and 88; (ix) respectively SEQ ID NO.: 84 and 94; ( x) are respectively SEQ ID NO.: 96 and 100; (xi) are respectively SEQ ID NO.: 106 and 110; (xii) are respectively SEQ ID NO.: 119 and 123; (xiii) are respectively SEQ ID NO. : 129 and 133; (xiv) are respectively SEQ ID NO.: 22 or 150 and 26, 154 or 157; (xv) are respectively SEQ ID NO.: 42 or 163 and 46 or 168; (xvi) are respectively SEQ ID NO.: any one of 129, 173, 175 or 178 and 133; (xvii) is any one of SEQ ID NO.: 52, 186, 189 or 191 and any one of 56, 194 or 196, respectively (xviii) are respectively SEQ ID NO.: 198 and 202; (xix) are respectively SEQ ID NO.: 208 and 212; (xx) are respectively SEQ ID NO.: 218 and 222; (xxi) are respectively SEQ ID NO.: 208 and 222 ID NO.: 228 and 232 or 238; (xxii) SEQ ID NO.: 240, respectively, and any one of 244, 250, or 252; (xxiii) SEQ ID NO.: 254 and 258, respectively; (xxiv) ) are respectively SEQ ID NO.: 264 and 268; (xxv) are respectively SEQ ID NO.: 274 and 278; (xxvi) are respectively SEQ ID NO.: 284, and any one of 288, 294 or 296; (xxvii) are respectively SEQ ID NO.: 298, and any one of 302, 308 or 310; (xxviii) are SEQ ID NO.: 312 and 316, respectively; (xxix) are SEQ ID NO.: 322 and 326; (xxx) are respectively SEQ ID NO.: 332 and 336, (xxxi) are respectively in SEQ ID NO.: 228, 350, 351 or 353 any one and any one of 232, 238, 355 or 357; (xxxii) are any one of SEQ ID NO.: 312, 359, 361, 363, 365, 367 or 368 and 316, respectively; ( xxxiii) are respectively SEQ ID NO.: 369 and 373; (xxxiv) are respectively SEQ ID NO.: 379 and 383; (xxxv) are respectively SEQ ID NO.: 389 and 393; (xxxvi) are respectively SEQ ID NO. : 399 and 403 or 738; (xxxvii) are respectively SEQ ID NO.: 409 and 413; (xxxviii) are respectively SEQ ID NO.: 419 and 423; (xxxix) are respectively SEQ ID NO.: 434 and 438; ( xxxx) are respectively SEQ ID NO.: 444 and 448; (xxxxi) are respectively SEQ ID NO.: 454 and 458; (xxxxii) are respectively SEQ ID NO.: 464 and 468; (xxxxiii) are respectively SEQ ID NO. : 474 and 478; (xxxxiv) are respectively SEQ ID NO.: 484 and 488; (xxxxv) are respectively SEQ ID NO.: 494 and 498; (xxxxvi) are respectively SEQ ID NO.: 504 and 508; (xxxxvii) are respectively SEQ ID NO.: 514 and 518; (xxxxviii) are respectively SEQ ID NO.: 524 and 528; (xxxix) are respectively SEQ ID NO.: 534 and 538; (xxxxx) are respectively SEQ ID NO.: 544 and 548; (xxxxxi) are respectively SEQ ID NO.: 554 and 558; (xxxxxii) are respectively SEQ ID NO.: 564 and 568; (xxxxxiii) are respectively SEQ ID NO.: 574 and 578; (xxxxxiv) are respectively SEQ ID NO.: 584 and 588; (xxxxxv) are respectively SEQ ID NO.: 594 and 598; (xxxxxvi) are respectively SEQ ID NO.: 604 and 608; (xxxxxvii) are respectively SEQ ID NO.: 614 and 618 (xxxxxviii) are respectively SEQ ID NO.: 624, 626 or 628 and 588; (xxxxxix) are respectively SEQ ID NO.: 630, 634, 636, 638, 640, 642, 644, 646, 648, 650, 652 , 654, 656, 658, 660, 662, 664, 666, 668, 670, 672, 674, 676, 678, 680, 682 or 684 and 686; (xxxxxx) are respectively SEQ ID NO.: 692 and 696; (xxxxxxi) are respectively SEQ ID NO.: 740-743 Any one of and 238; (xxxxxxii) are any of SEQ ID NO.: 399, 748, 749, 750, 752, 754, 756, 758, 759 or 761 and any of 403, 744 or 746, respectively one; or (xxxxxxiii) are SEQ ID NO.: 762 or 764 and 588, respectively.
在某些實施例中,VH及VL包含或由分別根據SEQ ID NO.: 624、626或628及588之胺基酸序列組成。在某些實施例中,VH及VL包含或由分別根據以下之胺基酸序列組成:SEQ ID NO.: 630、634、636、638、640、642、644、646、648、650、652、654、656、658、660、662、664、666、668、670、672、674、676、678、680、682或684及686。在某些實施例中,VH及VL包含或由分別根據SEQ ID NO.: 692及696之胺基酸序列組成。In certain embodiments, VH and VL comprise or consist of the amino acid sequences according to SEQ ID NO.: 624, 626 or 628 and 588, respectively. In certain embodiments, VH and VL comprise or consist of amino acid sequences according to the following, respectively: SEQ ID NO.: 630, 634, 636, 638, 640, 642, 644, 646, 648, 650, 652, 654, 656, 658, 660, 662, 664, 666, 668, 670, 672, 674, 676, 678, 680, 682 or 684 and 686. In certain embodiments, VH and VL comprise or consist of the amino acid sequences according to SEQ ID NO.: 692 and 696, respectively.
在某些實施例中,VH及VL包含或由分別根據SEQ ID NO.: 399及738之胺基酸序列組成。In certain embodiments, VH and VL comprise or consist of the amino acid sequences according to SEQ ID NO.: 399 and 738, respectively.
在某些實施例中,VH及VL包含或由分別根據SEQ ID NO.: 399及403之胺基酸序列組成。在某些實施例中,VH及VL包含或由分別根據SEQ ID NO.: 399及738之胺基酸序列組成。在某些實施例中,VH及VL包含或由分別根據SEQ ID NO.: 399及744之胺基酸序列組成。在某些實施例中,VH及VL包含或由分別根據SEQ ID NO.: 399及746之胺基酸序列組成。在某些實施例中,VH及VL包含或由分別根據SEQ ID NO.: 748及403之胺基酸序列組成。在某些實施例中,VH及VL包含或由分別根據SEQ ID NO.: 749及403之胺基酸序列組成。在某些實施例中,VH及VL包含或由分別根據SEQ ID NO.: 750及403之胺基酸序列組成。在某些實施例中,VH及VL包含或由分別根據SEQ ID NO.: 752及403之胺基酸序列組成。在某些實施例中,VH及VL包含或由分別根據SEQ ID NO.: 754及403之胺基酸序列組成。在某些實施例中,VH及VL包含或由分別根據SEQ ID NO.: 756及403之胺基酸序列組成。在某些實施例中,VH及VL包含或由分別根據SEQ ID NO.: 758及403之胺基酸序列組成。在某些實施例中,VH及VL包含或由分別根據SEQ ID NO.: 759及403之胺基酸序列組成。在某些實施例中,VH及VL包含或由分別根據SEQ ID NO.: 761及403之胺基酸序列組成。In certain embodiments, VH and VL comprise or consist of the amino acid sequences according to SEQ ID NO.: 399 and 403, respectively. In certain embodiments, VH and VL comprise or consist of the amino acid sequences according to SEQ ID NO.: 399 and 738, respectively. In certain embodiments, VH and VL comprise or consist of the amino acid sequences according to SEQ ID NO.: 399 and 744, respectively. In certain embodiments, VH and VL comprise or consist of the amino acid sequences according to SEQ ID NO.: 399 and 746, respectively. In certain embodiments, VH and VL comprise or consist of the amino acid sequences according to SEQ ID NO.: 748 and 403, respectively. In certain embodiments, VH and VL comprise or consist of the amino acid sequences according to SEQ ID NO.: 749 and 403, respectively. In certain embodiments, VH and VL comprise or consist of the amino acid sequences according to SEQ ID NO.: 750 and 403, respectively. In certain embodiments, VH and VL comprise or consist of the amino acid sequences according to SEQ ID NO.: 752 and 403, respectively. In certain embodiments, VH and VL comprise or consist of the amino acid sequences according to SEQ ID NO.: 754 and 403, respectively. In certain embodiments, VH and VL comprise or consist of the amino acid sequences according to SEQ ID NO.: 756 and 403, respectively. In certain embodiments, VH and VL comprise or consist of the amino acid sequences according to SEQ ID NO.: 758 and 403, respectively. In certain embodiments, VH and VL comprise or consist of the amino acid sequences according to SEQ ID NO.: 759 and 403, respectively. In certain embodiments, VH and VL comprise or consist of the amino acid sequences according to SEQ ID NO.: 761 and 403, respectively.
術語「CL」係指「免疫球蛋白輕鏈恆定區」或「輕鏈恆定區」,亦即來自抗體輕鏈之恆定區。術語「CH」係指「免疫球蛋白重鏈恆定區」或「重鏈恆定區」,根據抗體同型可進一步分為CH1、CH2及CH3 (IgA、IgD、IgG)或CH1、CH2、CH3,及CH4域(IgE,IgM)。抗體重鏈之Fc區進一步描述於本文中。在本發明所揭露之實施例中之任一者中,本揭露內容之抗體或抗原結合片段包含CL、CH1、CH2及CH3中之任一者或多者。在某些實施例中,CL包含與胺基酸序列SEQ ID NO.:8或SEQ ID NO.:9具有90%、91%、92%、93%、94%、95%、96%、97%、98%、99%或100%一致性的胺基酸序列。在某些實施例中,CH1-CH2-CH3 (亦稱為CH1-CH3)包含與胺基酸序列SEQ ID NO.:6或SEQ ID NO.:7具有90%、91%、92%、93%、94%、95%、96%、97%、98%、99%或100%一致性的胺基酸序列。The term "CL" refers to "immunoglobulin light chain constant region" or "light chain constant region", ie, the constant region from an antibody light chain. The term "CH" refers to "immunoglobulin heavy chain constant region" or "heavy chain constant region", which can be further divided into CH1, CH2 and CH3 (IgA, IgD, IgG) or CH1, CH2, CH3 according to antibody isotype, and CH4 domain (IgE, IgM). The Fc region of an antibody heavy chain is further described herein. In any of the embodiments disclosed herein, the antibody or antigen-binding fragment of the present disclosure comprises any one or more of CL, CH1, CH2, and CH3. In certain embodiments, the CL comprises 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97% with the amino acid sequence SEQ ID NO.:8 or SEQ ID NO.:9 %, 98%, 99% or 100% identical amino acid sequences. In certain embodiments, CH1-CH2-CH3 (also referred to as CH1-CH3) comprises 90%, 91%, 92%, 93%, 90%, 91%, 92%, 93% identical to the amino acid sequence SEQ ID NO.:6 or SEQ ID NO.:7 %, 94%, 95%, 96%, 97%, 98%, 99% or 100% identical amino acid sequences.
在某些實施例中,本揭露內容之抗體或抗原結合片段包含重鏈多肽及輕鏈多肽,該重鏈多肽包含或由SEQ ID NO.:767中所闡述之胺基酸序列組成,且該輕鏈多肽包含或由SEQ ID NO.:768中所闡述之胺基酸序列組成。In certain embodiments, an antibody or antigen-binding fragment of the present disclosure comprises a heavy chain polypeptide and a light chain polypeptide, the heavy chain polypeptide comprising or consisting of the amino acid sequence set forth in SEQ ID NO.:767, and the The light chain polypeptide comprises or consists of the amino acid sequence set forth in SEQ ID NO.:768.
應理解,例如在哺乳動物細胞株中產生可移除抗體重鏈之一或多個C端離胺酸(參見例如Liu等人,mAbs 6(5):1145-1154 (2014))。因此,本揭露內容之抗體或抗原結合片段可包含重鏈、CH1-CH3、CH3或Fc多肽,其中存在或不存在C端離胺酸殘基;換言之,涵蓋其中重鏈、CH1-CH3或Fc多肽之C端殘基因移除C端離胺酸而不為離胺酸的實施例,及其中離胺酸為C端殘基的實施例。在某些實施例中,組成物包含本揭露內容之多個抗體及/或抗原結合片段,其中一或多個抗體或抗原結合片段不包含在重鏈、CH1-CH3或Fc多肽之C端處的離胺酸殘基,且其中一或多個抗體或抗原結合片段包含在重鏈、CH1-CH3或Fc多肽之C端處的離胺酸殘基。換言之,在某些實施例中,重鏈可包含或由SEQ ID NO.:767中所闡述之不具有C端離胺酸的胺基酸序列組成。在某些實施例中,重鏈或CH1-CH3可包含SEQ ID NO.:6或SEQ ID ID NO.:7中所闡述之不具有C端離胺酸之胺基酸序列。It is understood that one or more C-terminal lysines of an antibody heavy chain can be removed, eg, in mammalian cell lines produced (see eg, Liu et al., mAbs 6(5):1145-1154 (2014)). Accordingly, an antibody or antigen-binding fragment of the present disclosure may comprise a heavy chain, CH1-CH3, CH3 or Fc polypeptide with or without the presence of a C-terminal lysine residue; in other words, encompassed therein heavy chain, CH1-CH3 or Fc Examples in which the C-terminal residue of the polypeptide is removed from the C-terminal lysine instead of lysine, and in which the lysine is the C-terminal residue. In certain embodiments, a composition comprises a plurality of antibodies and/or antigen-binding fragments of the present disclosure, wherein one or more antibodies or antigen-binding fragments are not included at the C-terminus of a heavy chain, CH1-CH3, or Fc polypeptide and wherein one or more of the antibody or antigen-binding fragments comprises a lysine residue at the C-terminus of the heavy chain, CH1-CH3, or Fc polypeptide. In other words, in certain embodiments, the heavy chain may comprise or consist of the amino acid sequence set forth in SEQ ID NO.:767 without a C-terminal lysine. In certain embodiments, the heavy chain or CH1-CH3 may comprise the amino acid sequence set forth in SEQ ID NO.:6 or SEQ ID NO.:7 without a C-terminal lysine.
「Fab」(抗原結合片段)為結合至抗原之抗體的一部分,且包括可變區及經由鏈間二硫鍵連接至輕鏈之重鏈的CH1。各Fab片段就抗原結合而言係單價的,亦即,其具有單一抗原結合位點。用胃蛋白酶處理抗體產生單一大型F(ab')2片段,其大致對應於具有二價抗原結合活性且仍能夠交聯抗原之二個二硫鍵連接的Fab片段。Fab及F(ab')2二者為「抗原結合片段」的實例。Fab'片段與Fab片段不同之處在於,Fab'片段在CH1域之羧基端具有額外的極少殘基,包括一或多個來自抗體鉸鏈區之半胱胺酸。Fab'-SH係其中恆定域之半胱胺酸殘基具有游離硫醇基之Fab'在本文中的名稱。F(ab')2抗體片段最初係以其之間具有鉸鏈半胱胺酸之Fab'片段對形式產生。抗體片段之其他化學偶合亦已知。A "Fab" (antigen-binding fragment) is a portion of an antibody that binds to an antigen and includes the variable region and CH1 of the heavy chain linked to the light chain via interchain disulfide bonds. Each Fab fragment is monovalent with respect to antigen binding, that is, it has a single antigen binding site. Treatment of the antibody with pepsin yields a single large F(ab')2 fragment, which roughly corresponds to a two disulfide-linked Fab fragment that has bivalent antigen binding activity and is still capable of crosslinking the antigen. Both Fab and F(ab')2 are examples of "antigen-binding fragments". Fab' fragments differ from Fab fragments in that Fab' fragments have an additional few residues at the carboxy terminus of the CH1 domain, including one or more cysteines from the antibody hinge region. Fab'-SH is the designation herein for Fab' in which the cysteine residues of the constant domains have free thiol groups. F(ab')2 antibody fragments were originally produced as pairs of Fab' fragments with hinge cysteines between them. Other chemical couplings of antibody fragments are also known.
Fab片段可例如藉由肽連接子接合以形成單鏈Fab,在本文中亦稱為「scFab」。在此等實施例中,可能不會存在存在於原生Fab中之鏈間二硫鍵,且連接子完全或部分用以連接或連接單一多肽鏈中之Fab片段。重鏈衍生之Fab片段(例如,包含VH + CH1或「Fd」、由VH + CH1或「Fd」組成或基本上由VH + CH1或「Fd」組成)及輕鏈衍生之Fab片段(例如,包含VL + CL、由VL + CL組成或基本上由VL + CL組成)可以任何排列連接以形成scFab。舉例而言,scFab可根據(重鏈Fab片段-連接子-輕鏈Fab片段)或(輕鏈Fab片段-連接子-重鏈Fab片段)自N端至C端方向排列。用於scFab中之肽連接子及例示性連接子序列在本文中更詳細地論述。Fab fragments can be joined, eg, by peptide linkers, to form single-chain Fabs, also referred to herein as "scFabs." In these embodiments, the interchain disulfide bonds present in the native Fab may not be present, and the linker is used, in whole or in part, to link or link Fab fragments in a single polypeptide chain. Heavy chain derived Fab fragments (e.g., comprising, consisting of, or consisting essentially of VH + CH1 or "Fd") and light chain derived Fab fragments (e.g., (comprising, consisting of, or consisting essentially of VL+CL) can be linked in any arrangement to form a scFab. For example, scFabs can be arranged in an N-terminal to C-terminal direction according to (heavy chain Fab fragment-linker-light chain Fab fragment) or (light chain Fab fragment-linker-heavy chain Fab fragment). Peptide linkers and exemplary linker sequences for use in scFabs are discussed in more detail herein.
「Fv」為含有完整抗原識別及抗原結合位點之小抗體片段。此片段通常由緊密、非共價締合之一個重鏈可變區域與一個輕鏈可變區域之二聚體組成。然而,即使單一可變域(或僅包含對抗原具有特異性之三個CDR之Fv的一半)能夠識別且結合抗原,但通常親和力比整個結合位點低。"Fv" is a small antibody fragment containing complete antigen recognition and antigen binding sites. This fragment typically consists of a dimer of a heavy chain variable region and a light chain variable region in tight, non-covalent association. However, even if a single variable domain (or half of an Fv comprising only three CDRs specific for an antigen) is capable of recognizing and binding an antigen, it is usually with lower affinity than the entire binding site.
「單鏈Fv」(亦縮寫為「sFv」或「scFv」)為包含連接成單一多肽鏈的VH 及VL 抗體域的抗體片段。在一些實施例中,scFv多肽包含介於VH與VL域之間的多肽連接子,其使得scFv能夠形成用於抗原結合之所需結構。可使用在此項技術中熟知之標準技術將此類肽連接子序列併入至融合多肽中。關於scFv之評述,參見Pluckthun in The Pharmacology of Monoclonal Antibodies,第113卷, Rosenburg及Moore編,Springer-Verlag, New York,第269-315頁(1994);Borrebaeck 1995,見下文。在某些實施例中,抗體或抗原結合片段包含scFv,該scFv包含VH域、VL域及將VH域連接至VL域之肽連接子。在特定實施例中,scFv包含藉由肽連接子連接至VL域之VH域,該肽連接子可呈VH-連接子-VL定向或呈VL-連接子-VH定向。本揭露內容之任何scFv可經工程化使得VL域之C端藉由短肽序列連接至VH域之N端,或反之亦然(亦即,(N)VL(C)-連接子-(N)VH(C)或(N)VH(C)-連接子-(N)VL(C)。或者,在一些實施例中,連接子可連接至VH域、VL域或二者之N端部分或末端。"Single-chain Fv" (also abbreviated "sFv" or "scFv") are antibody fragments comprising VH and VL antibody domains linked into a single polypeptide chain. In some embodiments, the scFv polypeptide comprises a polypeptide linker between the VH and VL domains that enables the scFv to form the desired structure for antigen binding. Such peptide linker sequences can be incorporated into fusion polypeptides using standard techniques well known in the art. For a review of scFv, see Pluckthun in The Pharmacology of Monoclonal Antibodies, Vol. 113, eds. Rosenburg and Moore, Springer-Verlag, New York, pp. 269-315 (1994); Borrebaeck 1995, infra. In certain embodiments, the antibody or antigen-binding fragment comprises a scFv comprising a VH domain, a VL domain, and a peptide linker connecting the VH domain to the VL domain. In particular embodiments, the scFv comprises a VH domain linked to a VL domain by a peptide linker, which may be in a VH-linker-VL orientation or in a VL-linker-VH orientation. Any scFv of the present disclosure can be engineered such that the C-terminus of the VL domain is linked to the N-terminus of the VH domain by a short peptide sequence, or vice versa (ie, (N)VL(C)-linker-(N) )VH(C) or (N)VH(C)-Linker-(N)VL(C). Alternatively, in some embodiments, the linker can be attached to the N-terminal portion of the VH domain, the VL domain, or both or end.
肽連接子序列可例如基於以下進行選擇:(1)其能呈現可撓性延伸構形;(2)其不能或缺乏呈現可與第一及第二多肽上之及/或目標分子上之功能性表位相互作用的二級結構的能力;及/或(3)缺乏或相對缺乏可能與多肽及/或目標分子反應之疏水性或帶電殘基。關於連接子設計(例如,長度)之其他考慮因素可包括其中VH及VL可形成功能性抗原結合位點之構形或構形範圍。在某些實施例中,肽連接子序列含有例如Gly、Asn及Ser殘基。連接子序列中亦可包括其他幾乎中性的胺基酸,諸如Thr及Ala。可適用作連接子之其他胺基酸序列包括以下中所揭露之序列:Maratea等人,Gene 40:39 46 (1985);Murphy等人,Proc. Natl. Acad. Sci. USA 83:8258 8262 (1986);美國專利第4,935,233號及美國專利第4,751,180號。連接子之其他例示性及非限制性實例可包括例如Glu-Gly-Lys-Ser-Ser-Gly-Ser-Gly-Ser-Glu-Ser-Lys-Val-Asp (SEQ ID NO: 19) (Chaudhary等人, Proc. Natl. Acad. Sci. USA 87:1066-1070 (1990))及Lys-Glu-Ser-Gly-Ser-Val-Ser-Ser-Glu-Gln-Leu-Ala-Gln-Phe-Arg-Ser-Leu-Asp (SEQ ID NO: 20) (Bird等人, Science 242:423-426 (1988))及五聚體Gly-Gly-Gly-Gly-Ser (SEQ ID NO: 21),當存在於單一迭代中或重複1至5次或更多次時,或更高;參見例如SEQ ID NO: 17。可使用任何適合之連接子,且一般而言長度可為約3、4、5、6、7、8、9、10、11、12、13、14、15、16、17、18、19、20、21、22、15 23、24、25、26、27、28、29、30、40、50、60、70、80、90、100個胺基酸,或長度低於約200個胺基酸,且將較佳包含可撓性結構(可為經連接子連接之二個區域、域、模體、片段或模組之間的構象運動提供彈性及空間),且將較佳為生物惰性的及/或在人類中具有免疫原性之低風險。例示性連接子包括包含以下或由以下組成之連接子:SEQ ID NO: 10-21中之任一者或多者中所闡述的胺基酸序列。在某些實施例中,連接子包含與SEQ ID NO: 10-21中之任一者中所闡述之胺基酸序列具有至少75% (亦即,至少約75%、80%、85%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99%或更高)之一致性的胺基酸序列或由其組成。The peptide linker sequence can be selected, for example, based on (1) its ability to assume a flexible, extended configuration; (2) its inability or lack of presentation to interact with the first and second polypeptides and/or on the target molecule. The ability of the functional epitope to interact with the secondary structure; and/or (3) the lack or relative lack of hydrophobic or charged residues that may react with the polypeptide and/or the target molecule. Other considerations regarding linker design (eg, length) can include the configuration or range of configurations in which VH and VL can form a functional antigen binding site. In certain embodiments, the peptide linker sequence contains, for example, Gly, Asn, and Ser residues. Other nearly neutral amino acids such as Thr and Ala may also be included in the linker sequence. Other amino acid sequences suitable for use as linkers include those disclosed in: Maratea et al, Gene 40:3946 (1985); Murphy et al, Proc. Natl. Acad. Sci. USA 83:8258 8262 ( 1986); US Patent No. 4,935,233 and US Patent No. 4,751,180. Other illustrative and non-limiting examples of linkers can include, for example, Glu-Gly-Lys-Ser-Ser-Gly-Ser-Gly-Ser-Glu-Ser-Lys-Val-Asp (SEQ ID NO: 19) (Chaudhary et al, Proc. Natl. Acad. Sci. USA 87:1066-1070 (1990)) and Lys-Glu-Ser-Gly-Ser-Val-Ser-Ser-Glu-Gln-Leu-Ala-Gln-Phe- Arg-Ser-Leu-Asp (SEQ ID NO: 20) (Bird et al., Science 242: 423-426 (1988)) and pentameric Gly-Gly-Gly-Gly-Ser (SEQ ID NO: 21), When present in a single iteration or repeated 1 to 5 or more times, or higher; see eg, SEQ ID NO: 17. Any suitable linker can be used, and in general lengths can be about 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 15 23, 24, 25, 26, 27, 28, 29, 30, 40, 50, 60, 70, 80, 90, 100 amino acids, or less than about 200 amino acids in length acid, and will preferably comprise a flexible structure (which can provide flexibility and space for conformational movement between two regions, domains, motifs, segments or modules connected by a linker), and will preferably be biologically inert and/or low risk of immunogenicity in humans. Exemplary linkers include linkers comprising or consisting of the amino acid sequences set forth in any one or more of SEQ ID NOs: 10-21. In certain embodiments, the linker comprises at least 75% (i.e., at least about 75%, 80%, 85%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or higher) identical amino acid sequences or consist thereof.
scFv可使用本文所揭露之VH及VL序列之任何組合或CDRH1、CDRH2、CDRH3、CDRL1、CDRL2或CDRL3序列之任何組合構築。scFvs can be constructed using any combination of VH and VL sequences disclosed herein or any combination of CDRHl, CDRH2, CDRH3, CDRLl, CDRL2 or CDRL3 sequences.
在一些實施例中,不需要連接子序列;例如當第一及第二多肽具有可用於分離功能域且預防空間干擾之非必需N端胺基酸區時。In some embodiments, a linker sequence is not required; eg, when the first and second polypeptides have non-essential N-terminal amino acid regions that can be used to separate functional domains and prevent steric interference.
在某些實施例中,本揭露內容之抗體或抗原結合片段為單特異性(例如,結合至單一表位)或多特異性的(例如,結合至多個表位及/或目標分子)。抗體及抗原結合片段可以多種形式構築。例示性抗體形式揭露於Spiess等人, Mol. Immunol. 67(2):95 (2015)中,且揭露於Brinkmann and Kontermann, mAbs 9(2):182-212 (2017)中,其形式及其製備方法以引用的方式併入本文中且包括例如雙特異性T細胞銜接器(BiTEs)、DARTs、杵臼結構(KIH)組件、scFv-CH3-KIH組件、KIH共同輕鏈抗體、TandAbs、三體(Triple Bodies)、TriBi迷你抗體、Fab-scFv、scFv-CH-CL-scFv、F(ab')2-scFv2、四價HCabs、胞內抗體、CrossMabs、雙功能Fabs (DAFs) (二合一或四合一)、DutaMabs、DT-IgG、電荷對、Fab臂交換、SEEDbodies、Triomabs、LUZ-Y組件、Fcabs、κλ-體、正交Fabs、DVD-Igs (例如,美國專利案第8,258,268號,其形式以全文引用之方式併入本文中)、IgG(H)-scFv、scFv-(H)IgG、IgG(L)-scFv、scFv-(L)IgG、IgG(L,H)-Fv、IgG(H)-V、V(H)-IgG、IgG(L)-V、V(L)-IgG、KIH IgG-scFab、2scFv-IgG、IgG-2scFv、scFv4-Ig、Zybody及DVI-IgG (四合一)、以及所謂的FIT-Ig (例如,PCT公開案第WO 2015/103072號,其形式以全文引用之方式併入本文中)、所謂的WuxiBody形式(例如,PCT公開案第WO 2019/057122號,其形式以全文引用之方式併入本文中)及所謂的In-Elbow-Insert Ig形式(IEI-Ig,例如PCT公開案第WO 2019/024979及WO 2019/025391號,其形式以全文引用之方式併入本文中)。In certain embodiments, the antibodies or antigen-binding fragments of the present disclosure are monospecific (eg, bind to a single epitope) or multispecific (eg, bind to multiple epitopes and/or target molecules). Antibodies and antigen-binding fragments can be constructed in a variety of formats. Exemplary antibody formats are disclosed in Spiess et al., Mol. Immunol. 67(2):95 (2015), and in Brinkmann and Kontermann, mAbs 9(2):182-212 (2017), the formats thereof and Methods of preparation are incorporated herein by reference and include, for example, Bispecific T-Cell Engagers (BiTEs), DARTs, Knob-Hole (KIH) Modules, scFv-CH3-KIH Modules, KIH Common Light Chain Antibodies, TandAbs, Trisomy (Triple Bodies), TriBi Mini Antibodies, Fab-scFv, scFv-CH-CL-scFv, F(ab')2-scFv2, Tetravalent HCabs, Intrabodies, CrossMabs, Bifunctional Fabs (DAFs) (2 in 1) or four in one), DutaMabs, DT-IgG, charge pairs, Fab arm exchange, SEEDbodies, Triomabs, LUZ-Y modules, Fcabs, κλ-bodies, orthogonal Fabs, DVD-Igs (e.g., US Pat. No. 8,258,268 , the form of which is incorporated herein by reference in its entirety), IgG(H)-scFv, scFv-(H)IgG, IgG(L)-scFv, scFv-(L)IgG, IgG(L,H)-Fv , IgG(H)-V, V(H)-IgG, IgG(L)-V, V(L)-IgG, KIH IgG-scFab, 2scFv-IgG, IgG-2scFv, scFv4-Ig, Zybody and DVI- IgG (four-in-one), as well as so-called FIT-Ig (eg, PCT Publication No. WO 2015/103072, the format of which is incorporated herein by reference in its entirety), the so-called WuxiBody format (eg, PCT Publication No. WO 2015/103072 WO 2019/057122, the form of which is incorporated herein by reference in its entirety) and the so-called In-Elbow-Insert Ig form (IEI-Ig, eg, PCT Publication Nos. WO 2019/024979 and WO 2019/025391, which form is incorporated herein by reference in its entirety).
在某些實施例中,抗體或抗原結合片段包含VH域、二個或更多個VL域或二者(亦即,二個或更多個VH域及二個或更多個VL域)中之二者或更多者。在特定實施例中,抗原結合片段包含形式(N端至C端方向) VH-連接子-VL-連接子-VH-連接子-VL,其中該等二個VH序列可能相同或不同,且二個VL序列可能相同或不同。此類連接之scFv可包括配置成結合至給定目標之VH及VL域的任何組合,且呈包含二個或更多個VH及/或二個或更多個VL之形式,可結合一個、二個或更多個不同表位或抗原。應瞭解,併入多個抗原結合域之形式可包括以任何組合或定向之VH及/或VL序列。舉例而言,抗原結合片段可包含形式VL-連接子-VH-連接子-VL-連接子-VH、VH-連接子-VL-連接子-VL-連接子-VH或VL-連接子-VH-連接子-VH-連接子-VL。In certain embodiments, the antibody or antigen-binding fragment comprises a VH domain, two or more VL domains, or both (ie, two or more VH domains and two or more VL domains) two or more of them. In certain embodiments, the antigen-binding fragment comprises the form (N-terminal to C-terminal orientation) VH-linker-VL-linker-VH-linker-VL, wherein the two VH sequences may be the same or different, and the two The VL sequences may be the same or different. Such linked scFvs can include any combination of VH and VL domains configured to bind to a given target, and in a form comprising two or more VHs and/or two or more VLs, can bind one, two or more different epitopes or antigens. It will be appreciated that formats incorporating multiple antigen binding domains may include VH and/or VL sequences in any combination or orientation. For example, an antigen-binding fragment can comprise the form VL-Linker-VH-Linker-VL-Linker-VH, VH-Linker-VL-Linker-VL-Linker-VH or VL-Linker-VH -Linker-VH-Linker-VL.
本揭露內容之構築的單特異性或多特異性抗體或抗原結合片段包含本文中所揭露之VH及VL序列之任何組合及/或CDRH1、CDRH2、CDRH3、CDRL1、CDRL2及CDRL3序列之任何組合。在一些實施例中,雙特異性或多特異性抗體或抗原結合片段可包含本揭露內容之一個、二個或更多個抗原結合域(例如,VH及VL)。可能存在結合至相同或不同SARS-CoV-2表位之二個或更多個結合域,且在一些實施例中,如本文所提供之雙特異性或多特異性抗體或抗原結合片段可包含另一SARS-CoV-2結合域,及/或可包含一起結合至不同抗原或病原體之結合域。Constructed monospecific or multispecific antibodies or antigen-binding fragments of the present disclosure comprise any combination of VH and VL sequences disclosed herein and/or any combination of CDRH1, CDRH2, CDRH3, CDRL1, CDRL2, and CDRL3 sequences. In some embodiments, bispecific or multispecific antibodies or antigen-binding fragments may comprise one, two, or more antigen-binding domains (eg, VH and VL) of the present disclosure. There may be two or more binding domains that bind to the same or different SARS-CoV-2 epitopes, and in some embodiments, bispecific or multispecific antibodies or antigen-binding fragments as provided herein may comprise Another SARS-CoV-2 binding domain, and/or may comprise binding domains that bind together to different antigens or pathogens.
在本發明所揭露之實施例中之任一者中,抗體或抗原結合片段可為多特異性的;例如雙特異性、三特異性或其類似性質。In any of the embodiments disclosed herein, the antibody or antigen-binding fragment may be multispecific; eg, bispecific, trispecific, or the like.
在某些實施例中,抗體或抗原結合片段包含:(i)第一VH及第一VL;及(ii)第二VH及第二VL,其中該第一VH及該第二VH不同且各自獨立地包含與以下中之任一者中所闡述之胺基酸序列具有至少85% (例如,85%、86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99%或100%)之一致性的一胺基酸序列:SEQ ID NO.: 22、32、42、52、62、72、74、84、96、106、119、129、139、150、163、173、175、178、186、189、191、198、208、218、228、240、298、312、322、332、350、351、353、359、361、363、365、367、368、369、379、389、399、409、419、429、434、444、454、464、474、484、494、504、514、524、534、544、554、564、574、584、594、604、614、624、626、628、630、634、636、638、640、642、644、646、648、650、652、654、656、658、660、662、664、666、668、670、672、674、676、678、680、682、684、692、740、741、742、743、748、749、750、752、754、756、758、759、761、762及764,且其中該第一VL及該第二VL不同且各自獨立地包含與以下中之任一者中所闡述之胺基酸序列具有至少85% (例如,具有85%、86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99%或100%)之一致性的胺基酸序列:SEQ ID NO.: 26、36、46、56、66、78、88、94、100、110、123、133、143、154、157、168、194、196、202、212、222、232、238、244、250、252、258、268、278、288、294、296、302、308、310、316、326、336、355、357、373、383、393、403、413、423、438、448、458、468、478、488、498、508、518、528、538、548、558、568、578、588、598、608、618、686、696、738、744及746,且其中該第一VH及該第一VL共同形成第一抗原結合位點,且其中該第二VH及該第二VL共同形成第二抗原結合位點。In certain embodiments, the antibody or antigen-binding fragment comprises: (i) a first VH and a first VL; and (ii) a second VH and a second VL, wherein the first VH and the second VH are different and each independently comprise at least 85% (e.g., 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%) of the amino acid sequence set forth in any of the following %, 94%, 95%, 96%, 97%, 98%, 99% or 100%) identical monoamino acid sequences: SEQ ID NO.: 22, 32, 42, 52, 62, 72, 74, 84, 96, 106, 119, 129, 139, 150, 163, 173, 175, 178, 186, 189, 191, 198, 208, 218, 228, 240, 298, 312, 322, 332, 350, 351, 353, 359, 361, 363, 365, 367, 368, 369, 379, 389, 399, 409, 419, 429, 434, 444, 454, 464, 474, 484, 494, 504, 514, 524, 534, 544, 554, 564, 574, 584, 594, 604, 614, 624, 626, 628, 630, 634, 636, 638, 640, 642, 644, 646, 648, 650, 652, 654, 656, 658, 660, 662, 664, 666, 668, 670, 672, 674, 676, 678, 680, 682, 684, 692, 740, 741, 742, 743, 748, 749, 750, 752, 754, 756, 758, 759, 761, 762, and 764, and wherein the first VL and the second VL are different and each independently comprise at least 85% of the amino acid sequence set forth in any of the following (e.g., having 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100%) Sexual amino acid sequence: SEQ ID NO.: 26, 36, 46, 56, 66, 78, 88, 94, 100, 110, 123, 133, 143, 154, 157, 168, 194, 196, 202, 212, 222, 232, 238, 244, 250, 252, 258, 268, 278, 288, 294, 296, 302, 308, 310, 316, 326, 336, 355, 357, 373, 383, 393, 403, 413, 423, 438, 448, 458, 468, 478, 488, 498, 508, 518, 528, 538, 548, 558, 568 , 578, 588, 598, 608, 618, 686, 696, 738, 744, and 746, and wherein the first VH and the first VL together form a first antigen-binding site, and wherein the second VH and the first The two VLs together form the second antigen binding site.
在某些實施例中,抗體或抗原結合片段包含(i)第一VH及第一VL;及(ii)第二VH及第二VL,其中該第一VH包含與SEQ ID NO.: 139及342中之任一者中所闡述之胺基酸序列具有至少85% (例如,具有85%、86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99%或100%)之一致性的胺基酸序列,且該第一VL包含與SEQ ID NO.:143及346中之任一者中所闡述之胺基酸序列具有至少85% (例如,具有85%、86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99%或100%)之一致性的胺基酸序列,且其中第二VH包含與SEQ ID NO.: 399、748、749、750、752、754、756、758、759及761中之任一者中所闡述之胺基酸序列具有至少具有至少85% (例如,具有85%、86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99%或100%)之一致性的胺基酸序列,且第二VL包含與SEQ ID NO.:403、744及746中之任一者中所闡述之胺基酸序列具有至少具有至少85% (例如,具有85%、86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99%或100%)之一致性的胺基酸序列。In certain embodiments, the antibody or antigen-binding fragment comprises (i) a first VH and a first VL; and (ii) a second VH and a second VL, wherein the first VH comprises and SEQ ID NO.: 139 and The amino acid sequence set forth in any one of 342 has at least 85% (e.g., has 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%) %, 95%, 96%, 97%, 98%, 99% or 100%) identical amino acid sequences, and the first VL comprises and SEQ ID NO.: 143 and 346 in any one of The stated amino acid sequence has at least 85% (e.g., has 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96% , 97%, 98%, 99% or 100%) identical amino acid sequence, and wherein the second VH comprises and SEQ ID NO.: 399, 748, 749, 750, 752, 754, 756, 758, The amino acid sequence set forth in any of 759 and 761 has at least at least 85% (e.g., 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100%) identical amino acid sequences, and the second VL comprises the The amino acid sequence set forth in any one has at least a %, 95%, 96%, 97%, 98%, 99% or 100%) identical amino acid sequences.
在某些實施例中,抗體或抗原結合片段包含Fc多肽或其片段。「Fc」片段或Fc多肽包含藉由二硫鍵固持在一起的二個抗體H鏈的羧基端部分(亦即,IgG之CH2及CH3域)。抗體「效應功能」係指可歸因於抗體之Fc區(例如原生序列Fc區或胺基酸序列變異Fc區)的彼等生物活性,且隨抗體同型而變化。抗體效應功能之實例包括:C1q結合及補體依賴性細胞毒性;Fc受體結合;抗體依賴性細胞介導之細胞毒性(ADCC);吞噬作用;細胞表面受體(例如B細胞受體)之下調;及B細胞活化。如本文所論述,可對Fc域進行修飾(例如,胺基酸取代),以便改變(例如,改進、減低或消除)含Fc之多肽(例如,本揭露內容之抗體)的一或多種功能性。此類功能包括例如Fc受體(FcR)結合、抗體半衰期調節(例如,藉由結合至FcRn)、ADCC功能、蛋白質A結合、蛋白質G結合及補體結合。改變(例如,改進、減低或消除)Fc功能性之胺基酸修飾包括例如T250Q/M428L、M252Y/S254T/T256E、H433K/N434F、M428L/N434S、E233P/L234V/L235A/G236 + A327G/A330S/P331S、E333A、S239D/A330L/I332E、P257I/Q311、K326W/E333S、S239D/I332E/G236A、N297Q、K322A、S228P、L235E + E318A/K320A/K322A、L234A/L235A (在本文中亦稱為「LALA」)及L234A/L235A/P329G突變,該等突變概述且標註於由InvivoGen (2011)所公開且在invivogen.com/PDF/review/review-Engineered-Fc-Regions-invivogen.pdf? utm_source=review&utm_medium=pdf&utm_ campaign=review&utm_content =Engineered-Fc-Regions下線上可用之「工程化Fc區」,且以全文引用之方式併入本文中。In certain embodiments, the antibody or antigen-binding fragment comprises an Fc polypeptide or fragment thereof. An "Fc" fragment or Fc polypeptide comprises the carboxy-terminal portions of two antibody H chains (ie, the CH2 and CH3 domains of IgG) held together by disulfide bonds. Antibody "effector functions" refer to those biological activities attributable to the Fc region (eg, native sequence Fc region or amino acid sequence variant Fc region) of an antibody, and vary with antibody isotype. Examples of antibody effector functions include: Clq binding and complement-dependent cytotoxicity; Fc receptor binding; antibody-dependent cell-mediated cytotoxicity (ADCC); phagocytosis; downregulation of cell surface receptors (eg, B cell receptors) ; and B cell activation. As discussed herein, modifications (eg, amino acid substitutions) to the Fc domain can be made in order to alter (eg, improve, reduce, or eliminate) one or more functionalities of an Fc-containing polypeptide (eg, an antibody of the present disclosure) . Such functions include, for example, Fc receptor (FcR) binding, antibody half-life modulation (eg, by binding to FcRn), ADCC function, protein A binding, protein G binding, and complement binding. Amino acid modifications that alter (e.g., improve, reduce or eliminate) Fc functionality include, e.g. P331S, E333A, S239D/A330L/I332E, P257I/Q311, K326W/E333S, S239D/I332E/G236A, N297Q, K322A, S228P, L235E + E318A/K320A/K322A, L234A/L235A (also referred to herein as "LALA" ") and L234A/L235A/P329G mutations, which are summarized and annotated in InvivoGen (2011) and published at invivogen.com/PDF/review/review-Engineered-Fc-Regions-invivogen.pdf?utm_source=review&utm_medium= pdf&utm_campaign=review&utm_content=Engineered-Fc-Regions "Engineered Fc Regions" are available online and are incorporated herein by reference in their entirety.
舉例而言,為了活化補體級聯,當免疫球蛋白分子附接至抗原目標時,C1q蛋白質複合物可結合至IgG1之至少二個分子或IgM之一個分子(Ward, E. S.及Ghetie, V., Ther. Immunol. 2 (1995) 77-94)。Burton, D. R.描述(Mol. Immunol. 22 (1985) 161-206)包含胺基酸殘基318至337之重鏈區參與補體結合。Duncan, A. R.及Winter, G. (Nature 332 (1988) 738-740)使用定點突變報導Glu318、Lys320及Lys322形成與C1q之結合位點。Glu318、Lys320及Lys 322殘基在C1q結合中之作用係藉由含有此等殘基之短合成肽抑制補體介導之溶解的能力證實。For example, to activate the complement cascade, the C1q protein complex can bind to at least two molecules of IgG1 or one molecule of IgM when an immunoglobulin molecule is attached to an antigenic target (Ward, E.S. and Ghetie, V., Ther. Immunol. 2 (1995) 77-94). Burton, D. R. describes (Mol. Immunol. 22 (1985) 161-206) that the heavy chain region comprising amino acid residues 318 to 337 is involved in complement fixation. Duncan, A. R. and Winter, G. (Nature 332 (1988) 738-740) reported using site-directed mutagenesis that Glu318, Lys320 and Lys322 form a binding site to C1q. The role of Glu318, Lys320 and Lys322 residues in C1q binding was demonstrated by the ability of short synthetic peptides containing these residues to inhibit complement-mediated lysis.
舉例而言,FcR結合可藉由Fc部分(抗體之Fc部分)與Fc受體(FcR)之相互作用介導,該Fc受體為在包括造血細胞之細胞上經特殊化的細胞表面受體。Fc受體屬於免疫球蛋白超家族,且表明介導藉由免疫複合體之吞噬作用移除經抗體塗佈之病原體及經由抗體依賴性細胞介導之細胞毒性溶解紅血球及塗佈有對應抗體之各種其他細胞目標(例如腫瘤細胞)二者(ADCC;Van de Winkel, J. G., and Anderson, C. L., J. Leukoc. Biol. 49 (1991) 511-524)。FcRs由其對免疫球蛋白類型之特異性定義;針對IgG抗體之Fc受體被稱為FcγR,針對IgE被稱為FcεR,針對IgA被稱為FcαR等等,且新生兒Fc受體被稱為FcRn。Fc受體結合描述於例如Ravetch, J. V., and Kinet, J. P.,Annu. Rev. Immunol. 9 (1991) 457-492; Capel, P. J.,等人,Immunomethods 4 (1994) 25-34; de Haas, M.,等人,J Lab. Clin. Med. 126 (1995) 330-341; and Gessner, J. E.,等人,Ann. Hematol. 76 (1998) 231-248。For example, FcR binding can be mediated by the interaction of the Fc portion (the Fc portion of an antibody) with an Fc receptor (FcR), a specialized cell surface receptor on cells including hematopoietic cells . Fc receptors belong to the immunoglobulin superfamily and have been shown to mediate the removal of antibody-coated pathogens by phagocytosis of immune complexes and the lysis of erythrocytes and corresponding antibody-coated cells by antibody-dependent cell-mediated cytotoxicity. Both various other cellular targets (eg tumor cells) (ADCC; Van de Winkel, JG, and Anderson, CL, J. Leukoc. Biol. 49 (1991) 511-524). FcRs are defined by their specificity for immunoglobulin classes; Fc receptors for IgG antibodies are called FcγRs, for IgE FcεRs, for IgA FcαRs, etc., and neonatal Fc receptors are called FcγRs FcRn. Fc receptor binding is described, for example, in Ravetch, JV, and Kinet, JP, Annu. Rev. Immunol. 9 (1991) 457-492; Capel, PJ, et al, Immunomethods 4 (1994) 25-34; de Haas, M ., et al, J Lab. Clin. Med. 126 (1995) 330-341; and Gessner, JE, et al, Ann. Hematol. 76 (1998) 231-248.
受體對原生IgG抗體之Fc域(FcγR)的交聯觸發多種效應功能,包括吞噬作用、抗體依賴性細胞毒性,及炎性介體釋放,以及免疫複合物清除及對抗體產生的調控。本文中涵蓋提供受體(例如,FcγR)之交聯的Fc部分。在人類中,迄今為止已表徵三種類別之FcγR,其為:(i) FcγRI (CD64),其以較高親和力結合單體IgG且在巨噬細胞、單核細胞、嗜中性白血球及嗜酸性白血球上表現;(ii) FcγRII (CD32),其以中等至較低親和力結合複合的IgG,尤其在白細胞上廣泛表現,咸信為抗體介導之免疫性之核心參與者,且其可分成FcγRIIA、FcγRIIb及FcγRIIC,其在免疫系統中執行不同功能,但以較低親和力結合至IgG-Fc,且此等受體之胞外域為高度同源的;及(iii) FcγRIII (CD16),其以中等至較低親和力結合IgG且已發現呈二種形式:FcγRIIIA,其已在NK細胞、巨噬細胞、嗜酸性白血球及一些單核細胞及T細胞上發現且咸信介導ADCC;及FcγRIIIB,其高度表現於嗜中性白血球上。Cross-linking of receptors to the Fc domain (FcyR) of native IgG antibodies triggers a variety of effector functions, including phagocytosis, antibody-dependent cytotoxicity, and release of inflammatory mediators, as well as immune complex clearance and modulation of antibody production. Contemplated herein are Fc moieties that provide cross-linking of receptors (eg, FcyRs). In humans, three classes of FcγRs have been characterized so far, which are: (i) FcγRI (CD64), which binds monomeric IgG with higher affinity and is Expressed on leukocytes; (ii) FcγRII (CD32), which binds complexed IgG with moderate to low affinity, is especially widely expressed on leukocytes, is believed to be a central player in antibody-mediated immunity, and can be divided into FcγRIIA , FcγRIIb, and FcγRIIC, which perform different functions in the immune system, but bind to IgG-Fc with lower affinity, and the extracellular domains of these receptors are highly homologous; and (iii) FcγRIII (CD16), which is characterized by Binds IgG with moderate to lower affinity and has been found in two forms: FcγRIIIA, which has been found on NK cells, macrophages, eosinophils and some monocytes and T cells and is believed to mediate ADCC; and FcγRIIIB, which Highly expressed on neutrophils.
在許多涉及殺傷作用之細胞(例如巨噬細胞、單核細胞、嗜中性白血球)上發現FcγRIIA,且其似乎能夠活化殺傷過程。FcγRIIB似乎在抑制過程中起一定作用,且在B細胞、巨噬細胞上及肥大細胞及嗜酸性白血球上發現FcγRIIB。重要的是,已顯示75%之所有FcγRIIb發現於肝臟中(Ganesan, L. P.等人, 2012: 「FcγRIIb on liver sinusoidal endothelium clears small immune complexes」 Journal of Immunology 189: 4981-4988)。FcγRIIB在肝竇內皮(稱為LSEC)上充分表現,且在肝臟及LSEC中之庫弗細胞中為小免疫複合體清除之主要部位(Ganesan, L. P.等人, 2012: FcγRIIb on liver sinusoidal endothelium clears small immune complexes. Journal of Immunology 189: 4981-4988)。FcyRIIA is found on many cells involved in killing (eg macrophages, monocytes, neutrophils) and appears to be able to activate the killing process. FcγRIIB appears to play a role in the inhibition process and is found on B cells, macrophages and on mast cells and eosinophils. Importantly, it has been shown that 75% of all FcyRIIbs are found in the liver (Ganesan, L. P. et al., 2012: "FcyRIIb on liver sinusoidal endothelium clears small immune complexes" Journal of Immunology 189: 4981-4988). FcγRIIB is well expressed on the hepatic sinusoidal endothelium (known as LSEC) and is a major site of clearance of small immune complexes in the liver and Kupffer cells in the LSEC (Ganesan, L. P. et al., 2012: FcγRIIb on liver sinusoidal endothelium clears small immune complexes. Journal of Immunology 189: 4981-4988).
在一些實施例中,本文中所揭露之抗體及其抗原結合片段包含用於結合至FcγRIIb,尤其Fc區之Fc多肽或其片段,諸如IgG型抗體。此外,有可能藉由引入如Chu, S. Y.等人, 2008: Inhibition of B cell receptor-mediated activation of primary human B cells by coengagement of CD19 and FcgammaRIIb with Fc-engineered antibodies. Molecular Immunology 45, 3926-3933所述之突變S267E及L328F對Fc部分工程化以促進FcγRIIb結合。藉此,可增強免疫複合體之清除(Chu, S.等人, 2014: Accelerated Clearance of IgE In Chimpanzees Is Mediated By Xmab7195, An Fc-Engineered Antibody With Enhanced Affinity For Inhibitory Receptor FcγRIIb. Am J Respir Crit, American Thoracic Society International Conference Abstracts)。在一些實施例中,本揭露內容之抗體或其抗原結合片段包含具有突變S267E及L328F之經工程化Fc部分,尤其如以下所述:Chu, S. Y.等人, 2008: Inhibition of B cell receptor-mediated activation of primary human B cells by coengagement of CD19 and FcgammaRIIb with Fc-engineered antibodies. Molecular Immunology 45, 3926-3933。In some embodiments, the antibodies and antigen-binding fragments thereof disclosed herein comprise Fc polypeptides or fragments thereof, such as IgG-type antibodies, for binding to FcyRIIb, particularly the Fc region. In addition, it is possible by introducing as described in Chu, S. Y. et al., 2008: Inhibition of B cell receptor-mediated activation of primary human B cells by coengagement of CD19 and FcgammaRIIb with Fc-engineered antibodies.
在B細胞上,FcγRIIb可用以抑制免疫球蛋白進一步產生及同型轉換為例如IgE類。在巨噬細胞上,認為FcγRIIb抑制如經由FcγRIIA介導之吞噬作用。在嗜酸性白血球及肥大細胞上,B形式可經由IgE結合至其單獨受體而有助於抑制此等細胞之活化。On B cells, FcyRIIb can be used to inhibit further immunoglobulin production and isotype switching to, for example, the IgE class. On macrophages, FcyRIIb is thought to inhibit phagocytosis, eg mediated through FcyRIIA. On eosinophils and mast cells, the B form can help inhibit the activation of these cells through IgE binding to its individual receptors.
關於FcγRI結合,E233-G236、P238、D265、N297、A327及P329中之至少一者的原生IgG中之修飾減少結合至FcγRI。取代至對應位置IgG1及IgG4中之位置233-236處的IgG2殘基使IgG1及IgG4與FcγRI之結合減少103 倍,且消除人類單核細胞對抗體致敏型紅細胞之反應(Armour, K. L.,等人. Eur. J. Immunol. 29 (1999) 2613-2624)。Regarding FcyRI binding, modifications in the native IgG of at least one of E233-G236, P238, D265, N297, A327 and P329 reduced binding to FcyRI. Substitution of IgG2 residues at positions 233-236 in corresponding positions IgG1 and IgG4 reduced IgG1 and IgG4 binding to FcγRI by a factor of 103 and abolished the response of human monocytes to antibody-sensitized erythrocytes (Armour, KL, et al. Eur. J. Immunol. 29 (1999) 2613-2624).
關於FcγRII結合,發現針對FcγRIIA之結合降低,例如針對E233-G236、P238、D265、N297、A327、P329、D270、Q295、A327、R292及K414中之至少一者的IgG突變。With regard to FcyRII binding, decreased binding was found for FcyRIIA, eg, IgG mutations for at least one of E233-G236, P238, D265, N297, A327, P329, D270, Q295, A327, R292, and K414.
人類FcγRIIA之二個等位基因形式為「H131」變異體,其以較高親和力結合至IgG1 Fc;及「R131」變異體,其以較低親和力結合至IgG1 Fc。參見例如,Bruhns等人, Blood 113:3716-3725 (2009)。The two allelic forms of human FcγRIIA are the "H131" variant, which binds to IgGl Fc with higher affinity; and the "R131" variant, which binds to IgGl Fc with lower affinity. See, eg, Bruhns et al., Blood 113:3716-3725 (2009).
關於FcγRIII結合,發現與FcγRIIIA之結合降低,例如針對E233-G236、P238、D265、N297、A327、P329、D270、Q295、A327、S239、E269、E293、Y296、V303、A327、K338及D376中之至少一者的突變。在人類IgG1上映射Fc受體之結合位點、上述突變位點及用於量測FcγRI及FcγRIIA結合之方法描述於Shields, R. L.等人, J. Biol. Chem. 276 (2001) 6591-6604中。Regarding FcγRIII binding, decreased binding to FcγRIIIA was found, for example, for E233-G236, P238, D265, N297, A327, P329, D270, Q295, A327, S239, E269, E293, Y296, V303, A327, K338 and D376 at least one mutation. Mapping the binding site of the Fc receptor on human IgG1, the mutation sites described above, and methods for measuring FcyRI and FcyRIIA binding are described in Shields, R. L. et al., J. Biol. Chem. 276 (2001) 6591-6604 .
人類FcγRIIIA之二個等位基因形式為「F158」變異體,其以較低親和力結合至IgG1 Fc;及「V158」變異體,其以較高親和力結合至IgG1 Fc。參見例如,Bruhns等人, Blood 113:3716-3725 (2009)。The two allelic forms of human FcγRIIIA are the "F158" variant, which binds to IgGl Fc with lower affinity; and the "V158" variant, which binds to IgGl Fc with higher affinity. See, eg, Bruhns et al., Blood 113:3716-3725 (2009).
關於結合至FcγRII,原生IgG Fc之二個區似乎參與FcγRIIs及IgG之間的相互作用,即(i) IgG Fc之下部鉸鏈部位,尤其胺基酸殘基L、L、G、G (234 - 237,EU編號),及(ii) IgG Fc之CH2域的相鄰區,尤其鄰近於下部鉸鏈區之上部CH2域(例如,在P331區)中的環及帶(Wines, B.D.,等人, J. Immunol. 2000;164: 5313 - 5318)。此外,FcγRI似乎結合至IgG Fc上之相同位點,而FcRn及蛋白質A結合至IgG Fc上之不同位點,其似乎在CH2-CH3界面處(Wines, B.D.,等人, J. Immunol. 2000;164: 5313 - 5318)。Regarding binding to FcyRII, two regions of native IgG Fc appear to be involved in the interaction between FcyRIIs and IgG, namely (i) the lower hinge site of the IgG Fc, especially the amino acid residues L, L, G, G (234- 237, EU numbering), and (ii) adjacent regions of the CH2 domain of an IgG Fc, particularly adjacent loops and bands in the upper CH2 domain (e.g., in the P331 region) of the lower hinge region (Wines, B.D., et al., J. Immunol. 2000; 164: 5313-5318). Furthermore, FcγRI appears to bind to the same site on IgG Fc, whereas FcRn and Protein A bind to different sites on IgG Fc, which appear to be at the CH2-CH3 interface (Wines, B.D., et al., J. Immunol. 2000 ; 164: 5313-5318).
亦涵蓋增加本揭露內容之Fc多肽或其片段與(亦即,一或多個) Fcγ受體之結合親和力的突變(例如,與參考Fc多肽或其片段或含有不包含一或多個突變之多肽或其片段相比)。參見例如,Delillo及Ravetch, Cell 161(5):1035-1045 (2015)及Ahmed等人, J. Struc. Biol. 194(1):78 (2016),Fc突變及其技術以引用之方式併入本文中。Also encompassed are mutations that increase the binding affinity of an Fc polypeptide or fragment thereof of the present disclosure to (i.e., one or more) Fcγ receptors (eg, with a reference Fc polypeptide or fragment thereof or containing a mutation that does not contain one or more mutations). polypeptides or fragments thereof). See, eg, Delillo and Ravetch, Cell 161(5):1035-1045 (2015) and Ahmed et al, J. Struc. Biol. 194(1):78 (2016), Fc mutations and techniques thereof are incorporated by reference into this article.
在本發明所揭露之實施例中之任一者中,抗體或抗原結合片段可包含Fc多肽或其片段,其包含選自G236A;S239D;A330L及I332E之突變;或包含該等突變中之任何二者或更多者的組合;例如S239D/I332E;S239D/A330L/I332E;G236A/S239D/I332E;G236A/A330L/I332E (在本文中亦稱為「GAALIE」);或G236A/S239D/A330L/I332E。在一些實施例中,Fc多肽或其片段不包含S239D。In any of the embodiments disclosed herein, the antibody or antigen-binding fragment can comprise an Fc polypeptide or fragment thereof comprising a mutation selected from the group consisting of G236A; S239D; A330L and I332E; or comprising any of these mutations A combination of two or more; for example, S239D/I332E; S239D/A330L/I332E; G236A/S239D/I332E; G236A/A330L/I332E (also referred to herein as "GAALIE"); or G236A/S239D/A330L/ I332E. In some embodiments, the Fc polypeptide or fragment thereof does not comprise S239D.
在某些實施例中,Fc多肽或其片段可包含以下或由以下組成:參與與FcRn之結合的Fc多肽或其片段的至少一部分。在某些實施例中,Fc多肽或其片段包含改進針對(例如,促進結合至) FcRn之結合親和力(例如,在pH為約6.0下),且在一些實施例中,藉此延長包含Fc多肽或其片段之分子之活體內半衰期(例如,與參考Fc多肽或其片段或在其他方面相同但不包含該(該等)修飾之抗體相比)的一或多個胺基酸修飾。在某些實施例中,Fc多肽或其片段包含或衍生自IgG Fc,且半衰期延長之突變包含以下中之任一者或多者:M428L;N434S;N434H;N434A;N434S;M252Y;S254T;T256E;T250Q;P257I;Q311I;D376V;T307A;E380A (EU編號)。在某些實施例中,半衰期延長之突變包含M428L/N434S (在本文中亦稱為「MLNS」)。在某些實施例中,半衰期延長之突變包含M252Y/S254T/T256E。在某些實施例中,半衰期延長之突變包含T250Q/M428L。在某些實施例中,半衰期延長之突變包含P257I/Q311I。在某些實施例中,半衰期延長之突變包含P257I/N434H。在某些實施例中,半衰期延長之突變包含D376V/N434H。在某些實施例中,半衰期延長之突變包含T307A/E380A/N434A。In certain embodiments, the Fc polypeptide or fragment thereof may comprise or consist of at least a portion of the Fc polypeptide or fragment thereof involved in binding to FcRn. In certain embodiments, the Fc polypeptide or fragment thereof comprises an improved binding affinity for (eg, promotes binding to) FcRn (eg, at a pH of about 6.0), and in some embodiments, thereby extending the Fc polypeptide comprising One or more amino acid modifications for the in vivo half-life of the molecule or fragment thereof (eg, as compared to a reference Fc polypeptide or fragment thereof, or an antibody that is otherwise identical but does not contain the modification(s). In certain embodiments, the Fc polypeptide or fragment thereof comprises or is derived from an IgG Fc, and the half-life extending mutation comprises any one or more of the following: M428L; N434S; N434H; N434A; N434S; M252Y; S254T; T256E ; T250Q; P257I; Q311I; D376V; T307A; E380A (EU number). In certain embodiments, the half-life extending mutation comprises M428L/N434S (also referred to herein as "MLNS"). In certain embodiments, the half-life extending mutation comprises M252Y/S254T/T256E. In certain embodiments, the half-life extending mutation comprises T250Q/M428L. In certain embodiments, the half-life extending mutation comprises P257I/Q311I. In certain embodiments, the half-life extending mutation comprises P257I/N434H. In certain embodiments, the half-life extending mutation comprises D376V/N434H. In certain embodiments, the half-life extending mutation comprises T307A/E380A/N434A.
在一些實施例中,抗體或抗原結合片段包括包含取代型突變M428L/N434S之Fc部分。在一些實施例中,抗體或抗原結合片段包括包含取代型突變G236A/A330L/I332E之Fc多肽或其片段。在某些實施例中,抗體或抗原結合片段包括(例如,IgG) Fc部分,其包含G236A突變、A330L突變及I332E突變(GAALIE),且不包含S239D突變(例如,包含位置239處之原生S)。在特定實施例中,抗體或抗原結合片段包括Fc多肽或其片段,其包含取代型突變:M428L/N434S及G236A/A330L/I332E,且任擇地不包含S239D。在某些實施例中,抗體或抗原結合片段包括Fc多肽或其片段,其包含取代型突變:M428L/N434S及G236A/S239D/A330L/I332E。In some embodiments, the antibody or antigen-binding fragment includes an Fc portion comprising the substitution mutation M428L/N434S. In some embodiments, the antibody or antigen-binding fragment comprises an Fc polypeptide or fragment thereof comprising substitutional mutations G236A/A330L/I332E. In certain embodiments, the antibody or antigen-binding fragment includes a (eg, IgG) Fc portion that includes the G236A mutation, the A330L mutation, and the I332E mutation (GAALIE), and does not include the S239D mutation (eg, includes the native S at position 239). ). In particular embodiments, the antibody or antigen-binding fragment includes an Fc polypeptide or fragment thereof comprising substitutional mutations: M428L/N434S and G236A/A330L/I332E, and optionally S239D. In certain embodiments, the antibody or antigen-binding fragment comprises an Fc polypeptide or fragment thereof comprising substitutional mutations: M428L/N434S and G236A/S239D/A330L/I332E.
在某些實施例中,抗體或抗原結合片段包含改變醣基化之突變,其中改變醣基化之突變包含N297A、N297Q或N297G,及/或抗體或抗原結合片段經部分或完全去醣基化及/或部分或完全去岩藻醣基化。宿主細胞株及部分或完全去醣基化或部分或完全去岩藻醣基化抗體及抗原結合片段之製備方法為已知的(參見例如,PCT公開案第WO 2016/181357號;Suzuki等人. Clin. Cancer Res. 13(6):1875-82 (2007);Huang等人. MAbs 6:1-12 (2018))。In certain embodiments, the antibody or antigen-binding fragment comprises a glycosylation-altering mutation, wherein the glycosylation-altering mutation comprises N297A, N297Q, or N297G, and/or the antibody or antigen-binding fragment is partially or fully deglycosylated and/or partial or complete defucosylation. Host cell lines and methods for making partially or fully deglycosylated or partially or fully defucosylated antibodies and antigen-binding fragments are known (see, eg, PCT Publication No. WO 2016/181357; Suzuki et al. . Clin. Cancer Res. 13(6):1875-82 (2007); Huang et al. MAbs 6:1-12 (2018)).
在某些實施例中,抗體或抗原結合片段即使當在個體中未發現可偵測位準之抗體或抗原結合片段時(亦即,當抗體或抗原結合片段在投予之後已自個體中清除時),亦能夠在個體中引發活體內持續保護。此類保護在本文中稱為疫苗作用。在不希望受理論束縛的情況下,咸信樹突狀細胞可內化抗體與抗原之複合物,且其後誘導或促成針對抗原之內源性免疫反應。在某些實施例中,抗體或抗原結合片段包含一或多個修飾,諸如Fc中之突變,包含G236A、A330L及I332E,該等修飾能夠活化可誘導例如對抗原之T細胞免疫性的樹突狀細胞。In certain embodiments, the antibody or antigen-binding fragment is detected even when no detectable level of the antibody or antigen-binding fragment is found in the individual (ie, when the antibody or antigen-binding fragment has been cleared from the individual after administration ), can also elicit sustained protection in vivo in individuals. Such protection is referred to herein as vaccine effect. Without wishing to be bound by theory, it is believed that dendritic cells can internalize complexes of antibody and antigen and subsequently induce or contribute to an endogenous immune response against the antigen. In certain embodiments, the antibody or antigen-binding fragment comprises one or more modifications, such as mutations in Fc, including G236A, A330L, and I332E, which are capable of activating dendrites that can induce, for example, T-cell immunity to antigens shape cells.
在本發明所揭露之實施例中之任一者中,抗體或抗原結合片段包含Fc多肽或其片段,其包括CH2 (或其片段)、CH3 (或其片段)或CH2及CH3,其中該CH2、CH3或二者可具有任何同型且可含有胺基酸取代或分別與對應野生型CH2或CH3相比之其他修飾。在某些實施例中,本揭露內容之Fc多肽包含締合以形成二聚體之二個CH2-CH3多肽。In any of the embodiments disclosed herein, the antibody or antigen-binding fragment comprises an Fc polypeptide or fragment thereof comprising CH2 (or fragment thereof), CH3 (or fragment thereof), or CH2 and CH3, wherein the CH2 , CH3, or both may be of any isotype and may contain amino acid substitutions or other modifications compared to the corresponding wild-type CH2 or CH3, respectively. In certain embodiments, an Fc polypeptide of the present disclosure comprises two CH2-CH3 polypeptides that associate to form a dimer.
在本發明所揭露之實施例中之任一者中,抗體或抗原結合片段可為單株抗體或抗原結合片段。如本文所用,術語「單株抗體」係指獲自基本上同種之抗體群體(亦即構成該群體之個別抗體為相同的,除了在一些情況下少量存在的可能天然存在之突變外)的抗體。單株抗體為高度特異性的,其針對單一抗原位點。此外,與包括針對不同表位之不同抗體的多株抗體製劑相反,各單株抗體針對抗原之單一表位。除其特異性以外,單株抗體亦為有利的,在於其可由其他抗體未經污染地合成。術語「單株」不應解釋為需要藉由任何特定方法來產生抗體。舉例而言,適用於本發明之單株抗體可藉由首先由Kohler等人, Nature 256:495 (1975)描述之融合瘤方法製備,或可在細菌、真核動物或植物細胞中使用重組DNA方法製得(參見例如美國專利案第4,816,567號)。亦可使用例如Clackson等人, Nature, 352:624-628 (1991)及Marks等人, J. Mol. Biol., 222:581-597 (1991)中描述之技術自噬菌體抗體庫中分離單株抗體。單株抗體亦可使用揭露於PCT公開案第WO 2004/076677A2號中之方法得到。In any of the embodiments disclosed herein, the antibody or antigen-binding fragment can be a monoclonal antibody or antigen-binding fragment. As used herein, the term "monoclonal antibody" refers to an antibody obtained from a population of substantially homogeneous antibodies (ie, the individual antibodies comprising the population are identical except for possible naturally occurring mutations that may be present in minor amounts in some cases) . Monoclonal antibodies are highly specific, being directed against a single antigenic site. Furthermore, each monoclonal antibody is directed against a single epitope of an antigen, as opposed to polyclonal antibody preparations that include different antibodies directed against different epitopes. In addition to their specificity, monoclonal antibodies are also advantageous in that they can be synthesized uncontaminated by other antibodies. The term "monoclonal" should not be construed as requiring the production of antibodies by any particular method. For example, monoclonal antibodies suitable for use in the present invention can be prepared by the fusion tumor method first described by Kohler et al., Nature 256:495 (1975), or recombinant DNA can be used in bacterial, eukaryotic or plant cells method (see, eg, US Pat. No. 4,816,567). Monoclonals can also be isolated from phage antibody libraries using techniques such as those described in Clackson et al., Nature, 352:624-628 (1991) and Marks et al., J. Mol. Biol., 222:581-597 (1991) Antibody. Monoclonal antibodies can also be obtained using the methods disclosed in PCT Publication No. WO 2004/076677A2.
本揭露內容之抗體及抗原結合片段包括「嵌合抗體」,其中重鏈及/或輕鏈之一部分與衍生自特定物種或屬於特定抗體類別或子類別之抗體中的對應序列相同或同源,而該(等)鏈之其餘部分與衍生自另一物種或屬於另一抗體類別或子類別之抗體,以及此類抗體之片段(只要其表現出所需生物活性)中的對應序列相同或同源(參見美國專利第4,816,567;5,530,101及7,498,415號;及Morrison等人, Proc. Natl. Acad. Sci. USA, 81:6851-6855 (1984))。舉例而言,嵌合抗體可包含人類及非人類殘基。此外,嵌合抗體可包含在接受者抗體或供體抗體中未發現之殘基。進行此等修飾以進一步改進抗體效能。關於其他細節,參見Jones等人, Nature 321:522-525 (1986);Riechmann等人, Nature 332:323-329 (1988);及Presta, Curr. Op. Struct. Biol. 2:593-596 (1992)。嵌合抗體亦包括靈長類化及人源化抗體。Antibodies and antigen-binding fragments of the present disclosure include "chimeric antibodies" in which a portion of the heavy and/or light chain is identical or homologous to the corresponding sequence in an antibody derived from a particular species or belonging to a particular antibody class or subclass, and the remainder of the chain(s) is identical or identical to the corresponding sequence in an antibody derived from another species or belonging to another antibody class or subclass, as well as fragments of such antibodies (so long as they exhibit the desired biological activity) source (see US Patent Nos. 4,816,567; 5,530,101 and 7,498,415; and Morrison et al., Proc. Natl. Acad. Sci. USA, 81:6851-6855 (1984)). For example, a chimeric antibody can comprise human and non-human residues. In addition, chimeric antibodies may contain residues not found in either the recipient antibody or the donor antibody. These modifications are made to further improve antibody performance. For additional details, see Jones et al., Nature 321:522-525 (1986); Riechmann et al., Nature 332:323-329 (1988); and Presta, Curr. Op. Struct. Biol. 2:593-596 ( 1992). Chimeric antibodies also include primatized and humanized antibodies.
「人源化抗體」通常被視為具有自非人類來源引入其中之一或多個胺基酸殘基的人類抗體。此等非人類胺基酸殘基通常獲自可變域。人源化可遵循Winter及同事之方法(Jones等人, Nature, 321:522-525 (1986);Reichmann等人, Nature, 332:323-327 (1988);Verhoeyen等人, Science, 239:1534-1536 (1988)),藉由用非人類可變序列取代人類抗體之對應序列進行。相應地,此類「人源化」抗體是嵌合抗體(美國專利第4,816,567;5,530,101及7,498,415號),其中實質上小於完整人類可變域已經非人類物種的相應序列取代。在某些情況下,「人源化」抗體為一種藉由非人類細胞或動物產生且包含人類序列,例如HC 域之抗體。A "humanized antibody" is generally regarded as a human antibody having one or more amino acid residues introduced therein from a non-human source. These non-human amino acid residues are typically obtained from variable domains. Humanization can follow the method of Winter and colleagues (Jones et al, Nature, 321:522-525 (1986); Reichmann et al, Nature, 332:323-327 (1988); Verhoeyen et al, Science, 239:1534 -1536 (1988)), by substituting non-human variable sequences for the corresponding sequences of human antibodies. Accordingly, such "humanized" antibodies are chimeric antibodies (US Pat. Nos. 4,816,567; 5,530,101 and 7,498,415) in which substantially less than complete human variable domains have been substituted with corresponding sequences from non-human species. In certain instances, a "humanized" antibody is an antibody produced by a non-human cell or animal and comprising human sequences, such as an HC domain.
「人抗體」為一種僅含有存在於由人類產生之抗體中之序列的抗體。然而,如本文所用,人類抗體可包含未在天然存在之人類抗體(例如,自人類中分離之抗體)中發現的殘基或修飾,包括本文所述之彼等修飾及變異體序列。此等係為了進一步改進或增強抗體效能而達成。在某些情況下,人類抗體藉由轉殖基因動物產生。舉例而言,參見美國專利第5,770,429;6,596,541及7,049,426號。A "human antibody" is an antibody that contains only the sequences present in antibodies produced by humans. However, as used herein, human antibodies may contain residues or modifications not found in naturally occurring human antibodies (eg, antibodies isolated from humans), including those modified and variant sequences described herein. These are achieved in order to further improve or enhance antibody performance. In certain instances, human antibodies are produced by transgenic animals. See, for example, US Patent Nos. 5,770,429; 6,596,541 and 7,049,426.
在某些實施例中,本揭露內容之抗體或抗原結合片段為嵌合、人源化或人類抗體或抗原結合片段。In certain embodiments, the antibodies or antigen-binding fragments of the present disclosure are chimeric, humanized, or human antibodies or antigen-binding fragments.
在一些實施例中,本揭露內容之抗體或抗原結合片段能夠以以下之EC50結合至SARS-CoV-2表面醣蛋白:低於500 ng/ml、低於250 ng/ml、低於100 ng/ml、低於90 ng/ml、低於80 ng/ml、低於70 ng/ml、低於60 ng/ml、低於50 ng/ml、低於40 ng/ml、低於30 ng/ml、低於25 ng/ml、低於20 ng/ml、低於16 ng/ml、低於15 ng/ml、低於14 ng/ml、低於13 ng/ml、低於12 ng/ml、低於10 ng/ml、低於9 ng/ml、低於8 ng/ml、低於7 ng/ml、低於6 ng/ml、低於5 ng/ml、低於4 ng/ml或低於2 mg/ml,如藉由ELISA (任擇地,間接ELISA及/或夾心ELISA)及/或藉由流式細胞測量術所量測,其中該SARS CoV-2表面醣蛋白表現於宿主細胞之細胞表面上。In some embodiments, the antibodies or antigen-binding fragments of the present disclosure are capable of binding to SARS-CoV-2 surface glycoproteins with the following EC50s: less than 500 ng/ml, less than 250 ng/ml, less than 100 ng/ml ml, below 90 ng/ml, below 80 ng/ml, below 70 ng/ml, below 60 ng/ml, below 50 ng/ml, below 40 ng/ml, below 30 ng/ml , below 25 ng/ml, below 20 ng/ml, below 16 ng/ml, below 15 ng/ml, below 14 ng/ml, below 13 ng/ml, below 12 ng/ml, Below 10 ng/ml, below 9 ng/ml, below 8 ng/ml, below 7 ng/ml, below 6 ng/ml, below 5 ng/ml, below 4 ng/ml or low At 2 mg/ml, as measured by ELISA (optionally, indirect ELISA and/or sandwich ELISA) and/or by flow cytometry, wherein the SARS CoV-2 surface glycoprotein is expressed on host cells on the cell surface.
在一些實施例中,本揭露內容之抗體或抗原結合片段能夠以以下之EC50結合至SARS-CoV-2表面醣蛋白RBD:低於500 ng/ml、低於250 ng/ml、低於100 ng/ml、低於90 ng/ml、低於80 ng/ml、低於70 ng/ml、低於60 ng/ml、低於50 ng/ml、低於40 ng/ml、低於30 ng/ml、低於25 ng/ml、低於20 ng/ml、低於16 ng/ml、低於15 ng/ml、低於14 ng/ml、低於13 ng/ml、低於12 ng/ml、低於10 ng/ml、低於9 ng/ml、低於8 ng/ml、低於7 ng/ml、低於6 ng/ml、低於5 ng/ml、低於4 ng/ml或低於2 mg/ml,如藉由ELISA (任擇地,間接ELISA及/或夾心ELISA)及/或藉由流式細胞測量術所量測,其中該SARS CoV-2表面醣蛋白表現於宿主細胞之細胞表面上。In some embodiments, the antibodies or antigen-binding fragments of the present disclosure are capable of binding to the SARS-CoV-2 surface glycoprotein RBD with the following EC50: less than 500 ng/ml, less than 250 ng/ml, less than 100 ng /ml, below 90 ng/ml, below 80 ng/ml, below 70 ng/ml, below 60 ng/ml, below 50 ng/ml, below 40 ng/ml, below 30 ng/ml ml, less than 25 ng/ml, less than 20 ng/ml, less than 16 ng/ml, less than 15 ng/ml, less than 14 ng/ml, less than 13 ng/ml, less than 12 ng/ml , less than 10 ng/ml, less than 9 ng/ml, less than 8 ng/ml, less than 7 ng/ml, less than 6 ng/ml, less than 5 ng/ml, less than 4 ng/ml or Below 2 mg/ml, as measured by ELISA (optionally, indirect ELISA and/or sandwich ELISA) and/or by flow cytometry, wherein the SARS CoV-2 surface glycoprotein is expressed in the host on the cell surface of cells.
在一些實施例中,本揭露內容之抗體或抗原結合片段能夠以以下之KD結合至SARS-CoV-2 RBD:低於5×10-8 M、低於4×10-8 M、低於3×10-8 M、低於2×10-8 M、低於1×10-8 M、低於5×10-9 M、低於1×10-9 M、低於5×10-10 M、低於1×10-10 M、低於5×10-11 M、低於1×10-11 M、低於5×10-12 M或低於1×10-12 M,如使用生物層干涉法(BLI),任擇地使用Octet儀器所測定,在該儀器中抗體或抗原結合片段任擇地在2.7 µg/ml下負載於蛋白質A針上,且SARS-CoV-2 RBD在6 µg/ml、1.5 µg/ml或0.4 µg/ml下負載5分鐘,進一步任擇地量測解離持續7分鐘。In some embodiments, the antibodies or antigen-binding fragments of the present disclosure are capable of binding to the SARS-CoV-2 RBD with the following KDs: less than 5 x 10-8 M, less than 4 x 10-8 M, less than 3 ×10 -8 M, below 2 × 10 -8 M, below 1 × 10 -8 M, below 5 × 10 -9 M, below 1 × 10 -9 M, below 5 × 10 -10 M , below 1×10 -10 M, below 5×10 -11 M, below 1×10 -11 M, below 5×10 -12 M, or below 1×10 -12 M if using biolayers Interferometry (BLI), optionally determined using an Octet instrument in which antibody or antigen-binding fragment is optionally loaded on a protein A needle at 2.7 µg/ml and SARS-CoV-2 RBD at 6 µg /ml, 1.5 µg/ml or 0.4 µg/ml for 5 minutes, further optionally measuring dissociation for 7 minutes.
在一些實施例中,本揭露內容之抗體或抗原結合片段能夠以以下之KD結合至SARS-CoV-2 RBD:低於6×10-8 M、低於5×10-8 M、低於4×10-8 M、低於3×10-8 M、低於2×10-8 M、低於1×10-8 M、低於5×10-9 M、低於4×10-9 M、低於3×10-9 M、低於2×10-9 M、低於1×10-9 M或低於8×10-10 M,如使用表面電漿子共振(SPR),任擇地使用Biacore T200儀器使用單一循環動力學方法所測定。In some embodiments, the antibodies or antigen-binding fragments of the present disclosure are capable of binding to the SARS-CoV-2 RBD with the following KDs: below 6×10 −8 M, below 5×10 −8 M, below 4 ×10 -8 M, below 3×10 -8 M, below 2×10 -8 M, below 1×10 -8 M, below 5×10 -9 M, below 4×10 -9 M , below 3×10 -9 M, below 2×10 -9 M, below 1×10 -9 M or below 8×10 -10 M, if using surface plasmon resonance (SPR), optional were determined using a single cycle kinetic method using a Biacore T200 instrument.
在一些實施例中,本揭露內容之抗體或抗原結合片段能夠結合至SARS-CoV-2 RBD,且抑制(i) RBD與(ii)人類ACE2及/或人類SIGLEC-1之間的相互作用。In some embodiments, the antibodies or antigen-binding fragments of the present disclosure are capable of binding to the SARS-CoV-2 RBD and inhibiting the interaction between (i) the RBD and (ii) human ACE2 and/or human SIGLEC-1.
在一些實施例中,本揭露內容之抗體或抗原結合片段能夠中和:(i)藉由SARS-CoV-2假病毒引起之感染,任擇地:(i)(a)其中中和IC50低於100 ng/ml、低於90 ng/ml、低於80 ng/ml、低於70 ng/ml、低於60 ng/ml、低於50 ng/ml、低於40 ng/ml、低於30 ng/ml、低於25 ng/ml、低於20 ng/ml、低於15 ng/ml、低於10 ng/ml、低於9 ng/ml、低於8 ng/ml、低於7 ng/ml、低於6 ng/ml、低於5 ng/ml、低於4 ng/ml、低於3 ng/ml、低於2 ng/ml或低於1 ng/ml,較佳低於10 ng/ml、低於9 ng/ml、低於8 ng/ml、低於7 ng/ml、低於6 ng/ml、低於5 ng/ml、低於4 ng/ml、低於3 ng/ml、低於2 ng/ml或低於1 ng/ml及/或(i)(b)其中中和IC80低於100 ng/ml、低於90 ng/ml、低於80 ng/ml、低於70 ng/ml、低於60 ng/ml、低於50 ng/ml、低於40 ng/ml、低於30 ng/ml或低於25 ng/ml,較佳低於50 ng/ml、低於40 ng/ml、低於30 ng/ml或低於25 ng/ml,及/或(i)(c)其中中和EC90低於300 ng/ml、低於200 ng/ml、低於100 ng/ml、低於90 ng/ml、低於80 ng/ml、低於70 ng/ml、低於60 ng/ml 50 ng/ml、低於40 ng/ml、低於30 ng/ml、低於25 ng/ml、低於20 ng/ml、低於15 ng/ml或低於10 ng/ml,其中進一步任擇地,該SARS-CoV-2假病毒包含VSV假病毒及/或MLV假病毒,及/或(i)(d)該SARS-CoV-2假病毒包含VSV假病毒及/或MLV假病毒;及/或(ii)藉由活SARS-CoV-2引起之感染,任擇地(ii)(a)其中EC50低於60 ng/ml、低於50 ng/ml、低於40 ng/ml、低於30 ng/ml、低於25 ng/ml、低於20 ng/ml、低於15 ng/ml、低於12 ng/ml、低於11 ng/ml、低於10 ng/ml、低於9 ng/ml、低於8 ng/ml、低於7 ng/ml、低於6 ng/ml、低於5/ng ml或低於4 ng/ml,較佳低於15 ng/ml、低於12 ng/ml、低於11 ng/ml、低於10 ng/ml、低於9 ng/ml、低於8 ng/ml、低於7 ng/ml、低於6 ng/ml、低於5/ng ml或低於4 ng/ml及/或(ii)(b)其中EC90低於50 ng/ml、低於40 ng/ml、低於35 ng/ml、低於30 ng/ml、低於25 ng/ml、低於20 ng/ml、低於15 ng/ml、低於12 ng/ml、低於11 ng/ml、低於10 ng/ml、低於9 ng/ml、低於8 ng/ml、低於7 ng/ml、低於6 ng/ml、低於5/ng ml或低於4 ng/ml,較佳低於30 ng/ml、低於25 ng/ml、低於20 ng/ml、低於15 ng/ml或低於12 ng/ml,及/或(ii)(c)經6小時時段,其中感染倍率為0.1;及/或(iii)藉由表現,任擇地經工程化以過度表現DC-SIGN、L-SIGN、SIGLEC或ACE2之宿主細胞(例如,HEK293T細胞)中之活SARS-CoV-2的感染;及/或(iv)藉由表現,任擇地經工程化以過度表現SIGLEC-1或ACE2之宿主細胞(例如,HEK293T細胞)中之活SARS-CoV-2的感染,其中中和感染包含完全中和感染。In some embodiments, the antibodies or antigen-binding fragments of the present disclosure are capable of neutralizing: (i) infection by a SARS-CoV-2 pseudovirus, optionally: (i) (a) wherein the neutralization IC50 is low below 100 ng/ml, below 90 ng/ml, below 80 ng/ml, below 70 ng/ml, below 60 ng/ml, below 50 ng/ml, below 40 ng/ml, below 30 ng/ml, below 25 ng/ml, below 20 ng/ml, below 15 ng/ml, below 10 ng/ml, below 9 ng/ml, below 8 ng/ml, below 7 ng/ml, below 6 ng/ml, below 5 ng/ml, below 4 ng/ml, below 3 ng/ml, below 2 ng/ml or below 1 ng/ml, preferably below 10 ng/ml, below 9 ng/ml, below 8 ng/ml, below 7 ng/ml, below 6 ng/ml, below 5 ng/ml, below 4 ng/ml, below 3 ng/ml, less than 2 ng/ml, or less than 1 ng/ml and/or (i)(b) wherein neutralization IC80 is less than 100 ng/ml, less than 90 ng/ml, less than 80 ng/ml , below 70 ng/ml, below 60 ng/ml, below 50 ng/ml, below 40 ng/ml, below 30 ng/ml or below 25 ng/ml, preferably below 50 ng/ml ml, less than 40 ng/ml, less than 30 ng/ml, or less than 25 ng/ml, and/or (i)(c) wherein the neutralization EC90 is less than 300 ng/ml, less than 200 ng/ml, Below 100 ng/ml, Below 90 ng/ml, Below 80 ng/ml, Below 70 ng/ml, Below 60 ng/ml 50 ng/ml, Below 40 ng/ml, Below 30 ng /ml, less than 25 ng/ml, less than 20 ng/ml, less than 15 ng/ml, or less than 10 ng/ml, wherein further optionally, the SARS-CoV-2 pseudovirus comprises VSV pseudovirus and and/or MLV pseudovirus, and/or (i)(d) the SARS-CoV-2 pseudovirus comprises VSV pseudovirus and/or MLV pseudovirus; and/or (ii) caused by live SARS-CoV-2 Infection, optionally (ii)(a) wherein the EC50 is below 60 ng/ml, below 50 ng/ml, below 40 ng/ml, below 30 ng/ml, below 25 ng/ml, below 20 ng/ml, below 15 ng/ml, below 12 ng/ml, below 11 ng/ml, below 10 ng/ml, below 9 ng/ml, below 8 ng/ml, below 7 ng/ml, below 6 ng /ml, less than 5/ng ml or less than 4 ng/ml, preferably less than 15 ng/ml, less than 12 ng/ml, less than 11 ng/ml, less than 10 ng/ml, less than 9 ng/ml, less than 8 ng/ml, less than 7 ng/ml, less than 6 ng/ml, less than 5/ng ml or less than 4 ng/ml and/or (ii)(b) wherein the EC90 is low below 50 ng/ml, below 40 ng/ml, below 35 ng/ml, below 30 ng/ml, below 25 ng/ml, below 20 ng/ml, below 15 ng/ml, below 12 ng/ml, below 11 ng/ml, below 10 ng/ml, below 9 ng/ml, below 8 ng/ml, below 7 ng/ml, below 6 ng/ml, below 5 /ng ml or less than 4 ng/ml, preferably less than 30 ng/ml, less than 25 ng/ml, less than 20 ng/ml, less than 15 ng/ml or less than 12 ng/ml, and/ or (ii) (c) over a 6-hour period with an infection multiplier of 0.1; and/or (iii) by expression, a host optionally engineered to overexpress DC-SIGN, L-SIGN, SIGLEC, or ACE2 Infection of live SARS-CoV-2 in cells (eg, HEK293T cells); and/or (iv) by expression, host cells (eg, HEK293T cells) optionally engineered to overexpress SIGLEC-1 or ACE2 ) infection of live SARS-CoV-2, wherein neutralizing infection includes fully neutralizing infection.
在一些實施例中,本揭露內容之抗體或抗原結合片段能夠中和藉由包含與包含SEQ ID NO.:3之SARS-CoV-2表面醣蛋白相比在該表面醣蛋白中之以下突變中之任一者的SARS-CoV-2變異體之感染:N501Y;S477N;N439K;L452R;E484K;K417N;T478K;S494P;A520S;N501T;A522S;Y453F;P384L。In some embodiments, an antibody or antigen-binding fragment of the present disclosure is capable of neutralizing by comprising the following mutations in a SARS-CoV-2 surface glycoprotein comprising SEQ ID NO.:3 as compared to the surface glycoprotein Infection of any of the SARS-CoV-2 variants: N501Y; S477N; N439K; L452R; E484K; K417N; T478K; S494P; A520S; N501T; A522S; Y453F; P384L.
在一些實施例中,本揭露內容之抗體或抗原結合片段能夠以低於該抗體或抗原結合片段中和藉由包含SEQ ID NO.:3中所闡述之該表面醣蛋白胺基酸序列之SARS-CoV-2的感染之該效能3倍的效能中和藉由該SARS-CoV-2變異體之感染。In some embodiments, an antibody or antigen-binding fragment of the present disclosure is capable of neutralizing SARS at a lower rate than the antibody or antigen-binding fragment by comprising the surface glycoprotein amino acid sequence set forth in SEQ ID NO.:3 Infection with CoV-2 was 3 times more potent than infection by the SARS-CoV-2 variant.
在一些實施例中,本揭露內容之抗體或抗原結合片段能夠活化FcγRIIa、FcγRIIIa或二者,其中任擇地:(i)該FcγRIIa包含H131對偶基因;及/或(ii)該FcγRIIIa包含V158對偶基因;及/或(iii)活化係使用表現SARS-CoV-2 S之目標細胞,諸如CHO細胞,及表現NFAT驅動之報導子,諸如螢光素酶之報導細胞確定。In some embodiments, an antibody or antigen-binding fragment of the present disclosure is capable of activating FcyRIIa, FcyRIIIa, or both, wherein optionally: (i) the FcyRIIa comprises a H131 counterpart; and/or (ii) the FcyRIIIa comprises a V158 counterpart Gene; and/or (iii) activation is determined using target cells expressing SARS-CoV-2 S, such as CHO cells, and reporter cells expressing NFAT-driven reporters, such as luciferase.
在一些實施例中,本揭露內容之抗體或抗原結合片段在非人類靈長類動物中之活體內半衰期在20與30天之間、或在22與28天之間、或在23與27天之間、或在24與26天之間、或為約25天。In some embodiments, the in vivo half-life of an antibody or antigen-binding fragment of the present disclosure in a non-human primate is between 20 and 30 days, or between 22 and 28 days, or between 23 and 27 days between, or between 24 and 26 days, or about 25 days.
在一些實施例中,本揭露內容之抗體或抗原結合片段能夠以約20至約30 ng/ml之IC50中和SARS-CoV-2感染及/或中和目標細胞之感染。In some embodiments, the antibodies or antigen-binding fragments of the present disclosure are capable of neutralizing SARS-CoV-2 infection and/or neutralizing infection of target cells with an IC50 of about 20 to about 30 ng/ml.
在一些實施例中,本揭露內容之抗體或抗原結合片段能夠以約10至約20 ng/ml之IC50中和SARS-CoV-2感染及/或中和目標細胞之感染。In some embodiments, the antibodies or antigen-binding fragments of the present disclosure are capable of neutralizing SARS-CoV-2 infection and/or neutralizing infection of target cells with an IC50 of about 10 to about 20 ng/ml.
在一些實施例中,本揭露內容之抗體或抗原結合片段能夠以約5至約10 ng/ml之IC50中和SARS-CoV-2感染及/或中和目標細胞之感染。In some embodiments, the antibodies or antigen-binding fragments of the present disclosure are capable of neutralizing SARS-CoV-2 infection and/or neutralizing infection of target cells with an IC50 of about 5 to about 10 ng/ml.
在一些實施例中,本揭露內容之抗體或抗原結合片段能夠以約1至約5 ng/ml之IC50中和SARS-CoV-2感染及/或中和目標細胞之感染。In some embodiments, the antibodies or antigen-binding fragments of the present disclosure are capable of neutralizing SARS-CoV-2 infection and/or neutralizing infection of target cells with an IC50 of about 1 to about 5 ng/ml.
在一些實施例中,本揭露內容之抗體或抗原結合片段能夠中和藉由SARS-CoV-2引起之感染,且不與人類ACE2競爭結合至該SARS-CoV-2 S蛋白,其中任擇地,該中和包含在活體外感染模型中中和感染。In some embodiments, the antibodies or antigen-binding fragments of the present disclosure are capable of neutralizing infection by SARS-CoV-2 and do not compete with human ACE2 for binding to the SARS-CoV-2 S protein, wherein optionally , which includes neutralizing infection in an in vitro infection model.
在一些實施例中,提供一種本揭露內容之抗體或抗原結合片段,其與本揭露內容之抗體或抗原結合片段競爭結合至SARS-CoV-2表面醣蛋白。 聚核苷酸、載體及宿主細胞 In some embodiments, an antibody or antigen-binding fragment of the present disclosure is provided that competes with the antibody or antigen-binding fragment of the present disclosure for binding to a SARS-CoV-2 surface glycoprotein. Polynucleotides, Vectors and Host Cells
在另一態樣中,本揭露內容提供經分離聚核苷酸,其編碼本發明所揭露之抗體或其抗原結合片段或其部分(例如,CDR、VH、VL、重鏈或輕鏈)中之任一者。在某些實施例中,聚核苷酸經密碼子最佳化以表現於宿主細胞中。當已知或鑑別到編碼序列時,密碼子最佳化可使用已知技術及工具,例如使用GenScript® OptimiumGeneTM 工具進行;亦參見Scholten等人,Clin. Immunol. 119:135, 2006)。密碼子最佳化序列包括經部分密碼子最佳化(亦即,一或多個密碼子經最佳化以在宿主細胞中表現)之序列及經完全密碼子最佳化之序列。In another aspect, the present disclosure provides isolated polynucleotides encoding the disclosed antibodies, or antigen-binding fragments thereof, or portions thereof (eg, CDRs, VH, VL, heavy or light chains) either. In certain embodiments, polynucleotides are codon-optimized for expression in host cells. When the coding sequence is known or identified, codon optimization can be performed using known techniques and tools, eg, using the GenScript® OptimiumGene ™ tool; see also Scholten et al., Clin. Immunol. 119:135, 2006). Codon-optimized sequences include partially codon-optimized (ie, one or more codons optimized for performance in a host cell) and fully codon-optimized sequences.
亦應瞭解,本揭露內容之編碼抗體及抗原結合片段的聚核苷酸可能具有不同核苷酸序列,但因例如遺傳密碼之簡倂、剪接及其類似物仍編碼相同抗體或抗原結合片段。It should also be appreciated that the polynucleotides encoding antibodies and antigen-binding fragments of the present disclosure may have different nucleotide sequences, but still encode the same antibodies or antigen-binding fragments due to, for example, brevity of the genetic code, splicing, and the like.
在某些實施例中,聚核苷酸包含與根據以下中之任一者或多者之聚核苷酸序列具有至少50% (亦即,50%、55%、60%、65%、70%、75%、80%、85%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99%或100%)之一致性的聚核苷酸:SEQ ID NO.:30、31、40、41、50、51、60、61、70、71、73、82、83、92、93、95、104、105、114、115、116、117、118、127、128、137、138、206、207、216、217、226、227、236、237、239、248、249、251、253、262、263、272、273、282、283、292、293、295、297、306、307、309、311、320、321、330、331、340、341、377、378、387、388、397、398、407、408、417、418、427、428、433、442、443、452、453、462、463、472、473、482、483、492、493、502、503、512、513、552、523、532、533、542、543、552、553、562、563、572、573、582、583、592、593、602、603、612、613、622、623、690、691、700-737及739。In certain embodiments, a polynucleotide comprises at least 50% (ie, 50%, 55%, 60%, 65%, 70%) of a polynucleotide sequence according to any one or more of the following %, 75%, 80%, 85%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100%) consistent polynuclei Glycosides: SEQ ID NO.: 30, 31, 40, 41, 50, 51, 60, 61, 70, 71, 73, 82, 83, 92, 93, 95, 104, 105, 114, 115, 116, 117, 118, 127, 128, 137, 138, 206, 207, 216, 217, 226, 227, 236, 237, 239, 248, 249, 251, 253, 262, 263, 272, 273, 282, 283, 292, 293, 295, 297, 306, 307, 309, 311, 320, 321, 330, 331, 340, 341, 377, 378, 387, 388, 397, 398, 407, 408, 417, 418, 427, 428, 433, 442, 443, 452, 453, 462, 463, 472, 473, 482, 483, 492, 493, 502, 503, 512, 513, 552, 523, 532, 533, 542, 543, 552, 553, 562, 563, 572, 573, 582, 583, 592, 593, 602, 603, 612, 613, 622, 623, 690, 691, 700-737 and 739.
在某些實施例中,聚核苷酸包含(i)與SEQ ID NO.:407中所闡述之該核苷酸序列具有至少50%、至少55%、至少60%、至少65%、至少70%、至少75%、至少80%、至少85%、至少90%、至少95%、至少97%、或至少99%之一致性,或包含SEQ ID NO.:407中所闡述之該核苷酸序列的聚核苷酸或由其組成;及(ii)與SEQ ID NO.:408、737或739中所闡述之該核苷酸序列具有至少50%、至少55%、至少60%、至少65%、至少70%、至少75%、至少80%、至少85%、至少90%、至少95%、至少97%、或至少99%之一致性,或包含SEQ ID NO.:408、737或739中所闡述之該核苷酸序列的聚核苷酸或由其組成。In certain embodiments, the polynucleotide comprises (i) at least 50%, at least 55%, at least 60%, at least 65%, at least 70% of the nucleotide sequence set forth in SEQ ID NO.:407 %, at least 75%, at least 80%, at least 85%, at least 90%, at least 95%, at least 97%, or at least 99% identical, or comprising the nucleotide set forth in SEQ ID NO.:407 and (ii) have at least 50%, at least 55%, at least 60%, at least 65% with the nucleotide sequence set forth in SEQ ID NO.: 408, 737 or 739 %, at least 70%, at least 75%, at least 80%, at least 85%, at least 90%, at least 95%, at least 97%, or at least 99% identical, or comprising SEQ ID NO.: 408, 737 or 739 A polynucleotide of the nucleotide sequence set forth in or consisting of.
在本發明所揭露之實施例中之任一者中,聚核苷酸可包含去氧核糖核酸(DNA)或核糖核酸(RNA)。在一些實施例中,RNA包含信使RNA (mRNA)。In any of the embodiments disclosed herein, the polynucleotide may comprise deoxyribonucleic acid (DNA) or ribonucleic acid (RNA). In some embodiments, the RNA comprises messenger RNA (mRNA).
亦提供載體,其中該載體包含或含有如本文中所揭露之聚核苷酸(例如,編碼結合至SARS-CoV-2之抗體或抗原結合片段的聚核苷酸)。載體可包含本文中所揭露之載體中之任一者或多者。在特定實施例中,提供一種載體,其包含例如編碼抗體或抗原結合片段或其部分之DNA質體構築體(例如,所謂的「DMAb」;參見例如Muthumani等人, J Infect Dis. 214(3):369-378 (2016);Muthumani等人, Hum Vaccin Immunother 9:2253-2262 (2013));Flingai等人, Sci Rep. 5:12616 (2015);及Elliott等人, NPJ Vaccines 18 (2017),其抗體編碼DNA構築體及相關使用方法,包括投予抗體編碼DNA構築體,以引用的方式併入本文中)。在某些實施例中,DNA質體構築體包含編碼抗體或抗原結合片段之重鏈及輕鏈(或VH及VL)的單一開放閱讀框架,其中編碼重鏈之序列及編碼輕鏈之序列任擇地藉由編碼蛋白酶裂解位點之聚核苷酸及/或藉由編碼自裂解肽之聚核苷酸分隔開。在一些實施例中,抗體或抗原結合片段之取代基組分由包含於單一質體中之聚核苷酸編碼。在其他實施例中,抗體或抗原結合片段之取代性組分由包含於二個或更多個質體(例如,第一質體包含編碼重鏈、VH或VH+CH之聚核苷酸,且第二質體包含編碼同源輕鏈、VL或VL+CL之聚核苷酸)中之聚核苷酸編碼。在某些實施例中,單一質體包含編碼來自本揭露內容之二個或更多個抗體或抗原結合片段之重鏈及/或輕鏈的聚核苷酸。例示性表現載體為pVax1,可購自Invitrogen®。本揭露內容之DNA質體可藉由例如電穿孔(例如,肌肉內電穿孔)或藉由適當的調配物(例如,玻尿酸酶)遞送至個體。A vector is also provided, wherein the vector comprises or contains a polynucleotide as disclosed herein (eg, a polynucleotide encoding an antibody or antigen-binding fragment that binds to SARS-CoV-2). The carrier may comprise any one or more of the carriers disclosed herein. In particular embodiments, a vector is provided comprising, eg, a DNA plastid construct encoding an antibody or antigen-binding fragment or portion thereof (eg, a so-called "DMAb"; see eg, Muthumani et al., J Infect Dis. 214 (3 ): 369-378 (2016); Muthumani et al, Hum Vaccin Immunother 9:2253-2262 (2013)); Flingai et al, Sci Rep. 5:12616 (2015); and Elliott et al, NPJ Vaccines 18 (2017 ), antibody-encoding DNA constructs thereof and related methods of use, including administration of antibody-encoding DNA constructs, incorporated herein by reference). In certain embodiments, the DNA plastid construct comprises a single open reading frame encoding the heavy and light chains (or VH and VL) of an antibody or antigen-binding fragment, wherein the sequence encoding the heavy chain and the sequence encoding the light chain are either are optionally separated by polynucleotides encoding protease cleavage sites and/or by polynucleotides encoding self-cleaving peptides. In some embodiments, the substituent component of the antibody or antigen-binding fragment is encoded by a polynucleotide contained in a single plastid. In other embodiments, the substituted component of the antibody or antigen-binding fragment is comprised of two or more plastids (eg, the first plastid comprises a polynucleotide encoding a heavy chain, VH, or VH+CH, And the second plastid comprises the polynucleotide encoding in the polynucleotide encoding the homologous light chain, VL or VL+CL. In certain embodiments, a single plastid comprises polynucleotides encoding heavy and/or light chains from two or more antibodies or antigen-binding fragments of the present disclosure. An exemplary expression vector is pVax1, available from Invitrogen®. DNA plastids of the present disclosure can be delivered to an individual, eg, by electroporation (eg, intramuscular electroporation) or by an appropriate formulation (eg, hyaluronidase).
在另一態樣中,本揭露內容亦提供一種宿主細胞,其表現根據本揭露內容之抗體或抗原結合片段;或包含或含有根據本揭露內容之載體或聚核苷酸。In another aspect, the present disclosure also provides a host cell expressing an antibody or antigen-binding fragment according to the present disclosure; or comprising or containing a vector or polynucleotide according to the present disclosure.
此類細胞之實例包括(但不限於)真核細胞,例如酵母細胞、動物細胞、昆蟲細胞、植物細胞;及原核細胞,包括大腸桿菌。在一些實施例中,細胞為哺乳動物細胞。在某些此類實施例中,細胞為哺乳動物細胞株,諸如CHO細胞(例如,DHFR-CHO細胞(Urlaub等人, PNAS 77:4216 (1980))、人類胚胎腎細胞(例如,HEK293T細胞)、PER.C6細胞、Y0細胞、Sp2/0細胞。NS0細胞、人類肝臟細胞,例如,Hepa RG細胞、骨髓瘤細胞或融合瘤細胞。哺乳動物宿主細胞株之其他實例包括小鼠塞爾托利氏細胞(例如,TM4細胞);由SV40 (COS-7)轉型之猴腎臟CV1株;幼倉鼠腎細胞(BHK);非洲綠猴腎細胞(VERO-76);猴腎細胞(CV1);人類子宮頸癌細胞(HELA);人類肺細胞(W138);人類肝臟細胞(Hep G2);犬腎細胞(MDCK;水牛鼠肝臟細胞(BRL 3A);小鼠乳房腫瘤(MMT 060562);TRI細胞;MRC 5細胞;及FS4細胞。適合於抗體產生之哺乳動物宿主細胞株亦包括描述於例如Yazaki and Wu, Methods in Molecular Biology,第248卷(B. K. C. Lo編, Humana Press, Totowa, N.J.),第255-268頁(2003)中之彼等宿主細胞株。Examples of such cells include, but are not limited to, eukaryotic cells, such as yeast cells, animal cells, insect cells, plant cells; and prokaryotic cells, including E. coli. In some embodiments, the cells are mammalian cells. In certain such embodiments, the cells are mammalian cell lines, such as CHO cells (eg, DHFR-CHO cells (Urlaub et al., PNAS 77:4216 (1980)), human embryonic kidney cells (eg, HEK293T cells) , PER.C6 cells, Y0 cells, Sp2/0 cells. NSO cells, human liver cells, e.g., Hepa RG cells, myeloma cells, or fusionoma cells. Other examples of mammalian host cell lines include mouse Sertoli Monkey kidney cells (e.g., TM4 cells); monkey kidney CV1 strain transformed by SV40 (COS-7); baby hamster kidney cells (BHK); African green monkey kidney cells (VERO-76); monkey kidney cells (CV1); human Cervical cancer cells (HELA); human lung cells (W138); human liver cells (Hep G2); canine kidney cells (MDCK; buffalo mouse liver cells (BRL 3A); mouse mammary tumor (MMT 060562); TRI cells; and FS4 cells. Mammalian host cell lines suitable for antibody production also include those described, for example, in Yazaki and Wu, Methods in Molecular Biology, Vol. 248 (eds. B.K.C. Lo, Humana Press, Totowa, N.J.), Vol. 255 - those host cell lines in p. 268 (2003).
在某些實施例中,宿主細胞為原核細胞,諸如大腸桿菌。 充分建立諸如大腸桿菌之原核細胞中之肽的表現(參見例如Pluckthun, A. Bio/Technology 9:545-551 (1991)。舉例而言,抗體可於細菌中產生,在不需要糖基化及Fc效應功能時尤其如此。關於抗體片段及多肽在細菌中之表現,參見例如美國專利第5,648,237;5,789,199;及5,840,523號。 In certain embodiments, the host cell is a prokaryotic cell, such as E. coli. The expression of peptides in prokaryotic cells such as E. coli is well established (see, eg, Pluckthun, A. Bio/Technology 9:545-551 (1991). For example, antibodies can be produced in bacteria without the need for glycosylation and This is especially true for Fc effector functions. For the expression of antibody fragments and polypeptides in bacteria, see, eg, US Pat. Nos. 5,648,237; 5,789,199; and 5,840,523.
在特定實施例中,細胞可經根據本說明書之載體,用表現載體轉染。術語「轉染」係指將核酸分子,諸如DNA或RNA(例如mRNA)分子引入細胞中,例如引入真核細胞中。在本說明書之情形下,術語「轉染」涵蓋熟習此項技術者已知用於將核酸分子引入至細胞中,諸如引入至真核細胞中,包括引入至哺乳動物細胞中的任何方法。此類方法涵蓋例如電穿孔、例如基於陽離子脂質及/或脂質體之脂質體轉染、磷酸鈣沈澱、基於奈米粒子之轉染、基於病毒之轉染或基於陽離子聚合物(諸如DEAE-聚葡萄糖或聚伸乙亞胺等)之轉染。在某些實施例中,引入為非病毒。In particular embodiments, cells can be transfected with expression vectors using vectors according to the present specification. The term "transfection" refers to the introduction of a nucleic acid molecule, such as a DNA or RNA (eg, mRNA) molecule, into a cell, eg, a eukaryotic cell. In the context of this specification, the term "transfection" encompasses any method known to those skilled in the art for introducing nucleic acid molecules into cells, such as eukaryotic cells, including mammalian cells. Such methods encompass, for example, electroporation, transfection of liposomes based on, for example, cationic lipids and/or liposomes, calcium phosphate precipitation, nanoparticle-based transfection, virus-based transfection, or cationic polymer-based (such as DEAE-Polymer) Glucose or polyethyleneimine, etc.) transfection. In certain embodiments, the introduction is non-viral.
此外,本揭露內容之宿主細胞可經根據本揭露內容之載體穩定地或暫時地轉染,例如用於表現根據本揭露內容之抗體或其抗原結合片段。在此類實施例中,細胞可經如本文所述之載體穩定地轉染。或者,細胞可經編碼如本文中所揭露之抗體或抗原結合片段之根據本揭露內容的載體暫時地轉染。在本發明所揭露之實施例中之任一者中,聚核苷酸可對宿主細胞為異源的。Furthermore, host cells of the present disclosure can be stably or transiently transfected with vectors according to the present disclosure, eg, for expressing antibodies or antigen-binding fragments thereof according to the present disclosure. In such embodiments, cells can be stably transfected with a vector as described herein. Alternatively, cells can be transiently transfected with a vector according to the present disclosure encoding an antibody or antigen-binding fragment as disclosed herein. In any of the embodiments disclosed herein, the polynucleotide can be heterologous to the host cell.
因此,本揭露內容亦提供異源性地表現本揭露內容之抗體或抗原結合片段的重組宿主細胞。舉例而言,細胞可屬於與完全或部分自其中得到該抗體之物種不同的物種(例如,表現人類抗體或工程化人類抗體之CHO細胞)。在一些實施例中,宿主細胞之細胞類型在自然界中不表現抗體或抗原結合片段。此外,宿主細胞可在不存在於抗體或抗原結合片段之原生狀態中(或在抗體或抗原結合片段經工程化或自其衍生之親體抗體的原生狀態中)之抗體或抗原結合片段上賦予轉譯後修飾(PTM;例如醣基化或岩藻醣基化)。此類PTM可產生功能差異(例如,降低之免疫原性)。因此,由宿主細胞產生之本揭露內容的抗體或抗原結合片段可包括不同於在原生狀態中之該抗體(或親體抗體)的一或多個轉譯後修飾(例如,由CHO細胞產生之人類抗體可包含當與人類分離及/或由原生人類B細胞或漿細胞產生時不同於該抗體之一或多個轉譯後修飾)。Accordingly, the present disclosure also provides recombinant host cells that heterologously express the antibodies or antigen-binding fragments of the present disclosure. For example, the cells may be of a different species than the species from which the antibody was obtained, in whole or in part, (eg, CHO cells expressing human antibodies or engineered human antibodies). In some embodiments, the host cell is a cell type that does not express the antibody or antigen-binding fragment in nature. In addition, the host cell can confer translation on an antibody or antigen-binding fragment that is not present in the native state of the antibody or antigen-binding fragment (or in the native state in which the antibody or antigen-binding fragment is engineered or a parent antibody derived therefrom) Post-modification (PTM; eg glycosylation or fucosylation). Such PTMs can produce functional differences (eg, reduced immunogenicity). Thus, an antibody or antigen-binding fragment of the present disclosure produced by a host cell may include one or more post-translational modifications that differ from the antibody (or parent antibody) in its native state (eg, a human antibody produced by CHO cells) Can comprise one or more post-translational modifications that differ from the antibody when isolated from humans and/or produced by native human B cells or plasma cells).
適用於表現本揭露內容之結合蛋白質的昆蟲細胞為此項技術中已知的且包括例如草地貪夜蛾Sf9細胞、粉紋夜蛾BTI-TN5B1-4細胞及草地貪夜蛾SfSWT01「MimicTM」細胞。參見例如Palmberger等人, J. Biotechnol. 153(3-4):160-166 (2011)。已鑑別出眾多可與昆蟲細胞聯合使用,尤其用於轉染草地黏蟲(Spodoptera frugiperda)細胞之桿狀病毒株。Insect cells suitable for expressing the binding proteins of the present disclosure are known in the art and include, for example, Spodoptera frugiperda Sf9 cells, Spodoptera frugiperda BTI-TN5B1-4 cells, and Spodoptera frugiperda SfSWT01 "Mimic™" cells . See, eg, Palmberger et al., J. Biotechnol. 153(3-4):160-166 (2011). Numerous baculovirus strains have been identified that can be used in combination with insect cells, especially for transfection of Spodoptera frugiperda cells.
諸如絲狀真菌或酵母之真核微生物亦為蛋白質編碼載體之適合的選殖或表現宿主,包括醣基化路徑已經「人源化」,從而使得產生抗體具有部分或完全人類醣基化模式的真菌及酵母菌株。參見Gerngross, Nat. Biotech. 22:1409-1414 (2004);Li等人, Nat. Biotech. 24:210-215 (2006)。Eukaryotic microorganisms such as filamentous fungi or yeast are also suitable hosts for colonization or expression of protein-encoding vectors, including those whose glycosylation pathway has been "humanized" to allow the production of antibodies with partially or fully human glycosylation patterns. Fungal and yeast strains. See Gerngross, Nat. Biotech. 22:1409-1414 (2004); Li et al., Nat. Biotech. 24:210-215 (2006).
植物細胞亦可用作用於表現本揭露內容之結合蛋白質的宿主。舉例而言,PLANTIBODIES™技術(描述於例如美國專利第5,959,177;6,040,498;6,420,548;7,125,978;及6,417,429號中)採用轉殖基因植物以產生抗體。Plant cells can also be used as hosts for expressing the binding proteins of the present disclosure. For example, the PLANTIBODIES™ technology (described in, eg, US Pat. Nos. 5,959,177; 6,040,498; 6,420,548; 7,125,978; and 6,417,429) employs transgenic plants to produce antibodies.
在某些實施例中,宿主細胞包含哺乳動物細胞。在特定實施例中,宿主細胞為CHO細胞、HEK293細胞、PER.C6細胞、Y0細胞、Sp2/0細胞、NS0細胞、人類肝臟細胞、骨髓瘤細胞或融合瘤細胞。In certain embodiments, the host cells comprise mammalian cells. In specific embodiments, the host cells are CHO cells, HEK293 cells, PER.C6 cells, Y0 cells, Sp2/0 cells, NSO cells, human liver cells, myeloma cells, or fusionoma cells.
在一相關態樣中,本揭露內容提供用於產生抗體或抗原結合片段之方法,其中該等方法包含在足以產生抗體或抗原結合片段之條件及時間下培養本揭露內容之宿主細胞。舉例而言,適用於分離及純化以重組方式產生之抗體的方法可包括獲得來自適合宿主細胞/載體系統(分泌重組抗體至培養基中)的上清液,且隨後使用可商購的過濾器濃縮培養基。在濃縮之後,可將濃縮物施加至單一適合之純化基質或施加至一系列適合之基質,諸如親和基質或離子交換樹脂。一或多個逆相HPLC步驟可用以進一步純化重組多肽。當免疫原與其自然環境分離時,亦可使用此等純化方法。大規模製備本文所述之經分離/重組抗體中之一或多者的方法包括分批細胞培養,其經監測及控制以維持適當培養條件。可溶性抗體之純化可根據本文所述及此項技術中已知之方法進行,且與國內及外來管控機構之法律及指導原則一致。 組成物 In a related aspect, the present disclosure provides methods for producing antibodies or antigen-binding fragments, wherein the methods comprise culturing the host cells of the present disclosure under conditions and for a time sufficient to produce the antibodies or antigen-binding fragments. For example, methods suitable for isolating and purifying recombinantly produced antibodies can include obtaining supernatants from a suitable host cell/vector system that secretes recombinant antibodies into the culture medium, and then concentrating using commercially available filters culture medium. After concentration, the concentrate can be applied to a single suitable purification matrix or to a series of suitable matrices, such as affinity matrices or ion exchange resins. One or more reverse phase HPLC steps can be used to further purify the recombinant polypeptide. These purification methods can also be used when the immunogen is isolated from its natural environment. Methods for large-scale production of one or more of the isolated/recombinant antibodies described herein include batch cell culture that is monitored and controlled to maintain appropriate culture conditions. Purification of soluble antibodies can be performed according to methods described herein and known in the art, and consistent with the laws and guidelines of domestic and foreign regulatory agencies. composition
本文亦提供包含單獨或以任何組合形式之本發明所揭露之抗體、抗原結合片段、聚核苷酸、載體或宿主細胞中之任一者或多者,且可進一步包含醫藥學上可接受之載體、賦形劑或稀釋劑的組成物。本文進一步詳細論述載劑、賦形劑及稀釋劑。Also provided herein are any one or more of the disclosed antibodies, antigen-binding fragments, polynucleotides, vectors or host cells, alone or in any combination, and may further comprise pharmaceutically acceptable A composition of carriers, excipients or diluents. Carriers, excipients, and diluents are discussed in further detail herein.
在某些實施例中,組成物包含根據本揭露內容之二個或更多個不同抗體或抗原結合片段。在某些實施例中,待以組合形式使用之抗體或抗原結合片段各自獨立地具有以下特徵中之任一者或多者:中和天然存在之SARS-CoV-2變異體;不與彼此競爭刺突蛋白結合;結合不同刺突蛋白表位;對SARS-CoV-2之抗性的形成減少;當以組合形式時,對SARS-CoV-2之抗性的形成減少;強力中和活SARS-CoV-2病毒;當組合使用時對活SARS-CoV-2病毒表現累加或協同效應;表現效應功能;在中具有保護性;能夠以充足數量產生以用於大規模生產。In certain embodiments, a composition comprises two or more different antibodies or antigen-binding fragments according to the present disclosure. In certain embodiments, the antibodies or antigen-binding fragments to be used in combination each independently have any one or more of the following characteristics: neutralize naturally occurring SARS-CoV-2 variants; do not compete with each other Spike protein binding; binds to different Spike protein epitopes; reduced formation of resistance to SARS-CoV-2; reduced formation of resistance to SARS-CoV-2 when combined; strongly neutralizes live SARS -CoV-2 virus; exhibits additive or synergistic effects on live SARS-CoV-2 virus when used in combination; exhibits effector function; is protective in SARS-CoV-2; can be produced in sufficient quantities for large-scale production.
在某些實施例中,組成物包含二個或更多個不同抗體或抗原結合片段,其可為二個或更多個本發明所揭露之抗體或抗原結合片段。在本發明所揭露之實施例中之任一者中,抗體或其抗原結合片段可包含於進一步包含抗體或抗原結合片段之組成物中,該抗體或抗原結合片段包含:(i)如分別SEQ ID NO.:343-345及347-349中所闡述之CDRH1、CDRH2、CDRH3、CDRL1、CDRL2及CDRL3胺基酸序列;或(ii)如分別SEQ ID NO.:140-142及144-146中所闡述之CDRH1、CDRH2、CDRH3、CDRL1、CDRL2及CDRL3胺基酸序列;或(iii)如分別SEQ ID NO.:342及346中所闡述之VH及VL胺基酸序列;或(iv)如分別SEQ ID NO.:139及143中所闡述之VH及VL胺基酸序列。In certain embodiments, the composition comprises two or more different antibodies or antigen-binding fragments, which can be two or more of the antibodies or antigen-binding fragments disclosed herein. In any of the embodiments disclosed herein, an antibody or antigen-binding fragment thereof may be included in a composition further comprising an antibody or antigen-binding fragment comprising: (i) SEQ ID NO: 1, respectively The CDRH1, CDRH2, CDRH3, CDRL1, CDRL2 and CDRL3 amino acid sequences set forth in ID NO.: 343-345 and 347-349; or (ii) as in SEQ ID NO.: 140-142 and 144-146, respectively The CDRH1, CDRH2, CDRH3, CDRL1, CDRL2 and CDRL3 amino acid sequences as set forth; or (iii) the VH and VL amino acid sequences as set forth in SEQ ID NO.: 342 and 346, respectively; or (iv) as The VH and VL amino acid sequences are set forth in SEQ ID NO.: 139 and 143, respectively.
在某些實施例中,組成物包含第一抗體或抗原結合片段及第二抗體或抗原結合片段,該第一抗體或抗原結合片段包含VH及VL,該VH包含或由SEQ ID NO: 32中所闡述之胺基酸序列組成,且該VL包含或由SEQ ID NO: 36中所闡述之胺基酸序列組成;且該第二抗體或抗原結合片段包含VH及VL,該VH包含或由SEQ ID NO: 139中所闡述之胺基酸序列組成,且該VL包含或由SEQ ID NO: 143中所闡述之胺基酸序列組成。在某些實施例中,組成物包含第一抗體或抗原結合片段,其包含重鏈可變域(VH)及輕鏈可變域(VL),該重鏈可變域(VH)包含CDRH1、CDRH2及CDRH3,且該輕鏈可變域(VL)包含CDRL1、CDRL2及CDRL3,其中該CDRH1、CDRH2及CDRH3分別包含SEQ ID NO: 33-35中所闡述之胺基酸序列或由其組成,且該CDRL1、CDRL2及CDRL3分別包含SEQ ID NO: 37-39中所闡述之胺基酸序列或由其組成,及第二抗體或抗原結合片段,其包含重鏈可變域(VH)及輕鏈可變域(VL),該重鏈可變域(VH)包含CDRH1、CDRH2及CDRH3,且該輕鏈可變域(VL)包含CDRL1、CDRL2及CDRL3,其中該CDRH1、CDRH2及CDRH3分別包含SEQ ID NO: 140-142中所闡述之胺基酸序列或由其組成,且該CDRL1、CDRL2及CDRL3分別包含SEQ ID NO: 144-146中所闡述之胺基酸序列或由其組成。In certain embodiments, the composition comprises a first antibody or antigen-binding fragment and a second antibody or antigen-binding fragment, the first antibody or antigen-binding fragment comprising a VH and a VL, the VH comprising or consisting of SEQ ID NO: 32 The amino acid sequence set forth consists of, and the VL comprises or consists of the amino acid sequence set forth in SEQ ID NO: 36; and the second antibody or antigen-binding fragment comprises VH and VL, which VH comprises or consists of SEQ ID NO: 36 consists of the amino acid sequence set forth in ID NO: 139, and the VL comprises or consists of the amino acid sequence set forth in SEQ ID NO: 143. In certain embodiments, the composition comprises a first antibody or antigen-binding fragment comprising a heavy chain variable domain (VH) and a light chain variable domain (VL) comprising CDRH1, CDRH2 and CDRH3, and the light chain variable domain (VL) comprises CDRL1, CDRL2 and CDRL3, wherein the CDRH1, CDRH2 and CDRH3 respectively comprise or consist of the amino acid sequences set forth in SEQ ID NOs: 33-35, And the CDRL1, CDRL2 and CDRL3 comprise or consist of the amino acid sequences set forth in SEQ ID NOs: 37-39, respectively, and a second antibody or antigen-binding fragment comprising a heavy chain variable domain (VH) and a light A chain variable domain (VL), the heavy chain variable domain (VH) comprising CDRH1, CDRH2 and CDRH3, and the light chain variable domain (VL) comprising CDRL1, CDRL2 and CDRL3, wherein the CDRH1, CDRH2 and CDRH3 respectively comprise The amino acid sequences set forth in SEQ ID NOs: 140-142 or consist of the same, and the CDRL1, CDRL2 and CDRL3 comprise or consist of the amino acid sequences set forth in SEQ ID NOs: 144-146, respectively.
在某些實施例中,組成物包含第一抗體或抗原結合片段及第二抗體或抗原結合片段,該第一抗體或抗原結合片段包含VH及VL,該VH包含或由如SEQ ID NO: 139或342中所闡述之胺基酸序列組成,且該VL包含或由如SEQ ID NO: 143或346中所闡述之胺基酸序列組成;且該第二抗體或抗原結合片段包含VH及VL,該VH包含或由SEQ ID NO: 399、748、749、750、752、754、756、758、759或761中所闡述之胺基酸序列組成,且該VL包含或由SEQ ID NO: 403、744或746中所闡述之胺基酸序列組成。在某些實施例中,組成物包含第一抗體或抗原結合片段及第二抗體或抗原結合片段,該第一抗體或抗原結合片段包含重鏈可變域(VH)及輕鏈可變域(VL),該重鏈可變域(VH)包含CDRH1、CDRH2及CDRH3,且該輕鏈可變域(VL)包含CDRL1、CDRL2及CDRL3,其中該CDRH1、CDRH2及CDRH3分別包含SEQ ID NO: 140-142或分別343-345中所闡述之胺基酸序列或由其組成,且該CDRL1、CDRL2及CDRL3分別包含SEQ ID NO: 144-146中所闡述之胺基酸序列或由其組成;且該第二抗體或抗原結合片段包含重鏈可變域(VH)及輕鏈可變域(VL),該重鏈可變域(VH)包含CDRH1、CDRH2及CDRH3,且該輕鏈可變域(VL)包含CDRL1、CDRL2及CDRL3,其中該CDRH1、CDRH2及CDRH3分別包含SEQ ID NO: 400、401及751、753、755、757、760中之任一者中所闡述之胺基酸序列或由其組成,且該CDRL1、CDRL2及CDRL3分別包含SEQ ID NO: 404、405及406、745及747中之任一者中所闡述之胺基酸序列或由其組成。In certain embodiments, the composition comprises a first antibody or antigen-binding fragment and a second antibody or antigen-binding fragment, the first antibody or antigen-binding fragment comprising a VH and a VL, the VH comprising or consisting of, for example, SEQ ID NO: 139 or the amino acid sequence set forth in 342, and the VL comprises or consists of the amino acid sequence set forth in SEQ ID NO: 143 or 346; and the second antibody or antigen-binding fragment comprises VH and VL, The VH comprises or consists of the amino acid sequence set forth in SEQ ID NO: 399, 748, 749, 750, 752, 754, 756, 758, 759 or 761, and the VL comprises or consists of SEQ ID NO: 403, The amino acid sequence composition set forth in 744 or 746. In certain embodiments, the composition comprises a first antibody or antigen-binding fragment and a second antibody or antigen-binding fragment, the first antibody or antigen-binding fragment comprising a heavy chain variable domain (VH) and a light chain variable domain ( VL), the heavy chain variable domain (VH) comprises CDRH1, CDRH2 and CDRH3, and the light chain variable domain (VL) comprises CDRL1, CDRL2 and CDRL3, wherein the CDRH1, CDRH2 and CDRH3 comprise SEQ ID NO: 140 respectively - 142 or the amino acid sequences set forth in 343-345, respectively, or consist of, and the CDRL1, CDRL2, and CDRL3, respectively, comprise or consist of the amino acid sequences set forth in SEQ ID NOs: 144-146; and The second antibody or antigen-binding fragment comprises a heavy chain variable domain (VH) and a light chain variable domain (VL), the heavy chain variable domain (VH) comprises CDRH1, CDRH2 and CDRH3, and the light chain variable domain (VL) comprises CDRL1, CDRL2, and CDRL3, wherein the CDRH1, CDRH2, and CDRH3 comprise the amino acid sequence set forth in any one of SEQ ID NOs: 400, 401, and 751, 753, 755, 757, 760, respectively, or consists of, and the CDRL1, CDRL2 and CDRL3 comprise or consist of the amino acid sequence set forth in any of SEQ ID NOs: 404, 405 and 406, 745 and 747, respectively.
本文亦提供包含以下之組成物:(i)第一抗體或抗原結合片段,其能夠結合至SARS-CoV-2表面醣蛋白,且抑制該SARS-CoV-2表面醣蛋白與選自ACE2、DC-SIGN、L-SIGN及SIGLEC-1之第一細胞表面受體之間的相互作用;及(ii)第二抗體或抗原結合片段,其能夠結合至SARS-CoV-2表面醣蛋白,且抑制該SARS-CoV-2表面醣蛋白與選自ACE2、DC-SIGN、L-SIGN及SIGLEC-1之第二細胞表面受體之間的相互作用,其中該第一細胞表面受體與該第二細胞表面受體不同。如本發明中所教示,可藉由組合抗體或抗原結合片段,使抗體或抗原結合片段與SARS-CoV-2結合以抑制SARS-CoV-2與二個或更多個細胞表面受體;例如黏附受體及進入受體、二個進入受體、二個黏附受體或其類似物之間的相互作用來達成或改進感染之中和。亦提供使用此類抗體組合以治療或預防SARS-CoV-2感染的方法。Also provided herein is a composition comprising: (i) a first antibody or antigen-binding fragment capable of binding to a SARS-CoV-2 surface glycoprotein and inhibiting the SARS-CoV-2 surface glycoprotein from interacting with the group consisting of ACE2, DC - the interaction between the first cell surface receptors of SIGN, L-SIGN and SIGLEC-1; and (ii) a second antibody or antigen-binding fragment capable of binding to the SARS-CoV-2 surface glycoprotein and inhibiting The interaction between the SARS-CoV-2 surface glycoprotein and a second cell surface receptor selected from ACE2, DC-SIGN, L-SIGN and SIGLEC-1, wherein the first cell surface receptor and the second cell surface receptor Cell surface receptors are different. As taught in the present invention, antibodies or antigen-binding fragments can be combined with SARS-CoV-2 to inhibit SARS-CoV-2 and two or more cell surface receptors by combining antibodies or antigen-binding fragments; e.g. Interactions between adhesion receptors and entry receptors, two entry receptors, two adhesion receptors or analogs thereof to achieve or improve neutralization of infection. Methods of using such antibody combinations to treat or prevent SARS-CoV-2 infection are also provided.
在某些實施例中,組成物包含第一載體及第二載體,該第一載體包含第一質體,且該第二載體包含第二質體,其中該第一質體包含編碼抗體或其抗原結合片段之重鏈、VH或VH+CH之聚核苷酸,且第二質體包含編碼同源輕鏈、VL或VL+CL之聚核苷酸。在某些實施例中,組成物包含耦合至適合之遞送媒劑或載劑之聚核苷酸(例如,mRNA)。用於向人類個體投予之例示性媒劑或載劑包括脂質或脂質源衍生的遞送載劑,諸如脂質體、固體脂質奈米粒子、油性懸浮液、次微米級脂質乳液、脂質微泡、逆脂質微胞、耳蝸脂質體、脂質微管、脂質微柱或脂質奈米粒子(LNP)或奈米尺度平台(參見例如,Li等人. Wilery Interdiscip Rev. Nanomed Nanobiotechnol. 11(2):e1530 (2019))。用於設計適當的mRNA及調配mRNA-LNP及其遞送之原理、試劑及技術描述於例如Pardi等人(J Control Release 217345-351 (2015));Thess等人(Mol Ther 23: 1456-1464 (2015));Thran等人(EMBO Mol Med 9(10):1434-1448 (2017);等人(Sci. Immunol. 4 eaaw6647 (2019);及Sabnis等人(Mol. Ther. 26:1509-1519 (2018)),該等技術包括封端、密碼子最佳化、核苷修飾、mRNA純化、將mRNA併入穩定的脂質奈米粒子中(例如,可離子化陽離子脂質/磷脂醯膽鹼/膽固醇/PEG-脂質;可離子化脂質:二硬脂醯基PC:膽固醇:聚乙二醇脂質),及其皮下、肌肉內、皮內、靜脈內、腹膜內及氣管內投予,以引用的方式併入本文中。 方法及用途 In certain embodiments, a composition includes a first vector and a second vector, the first vector includes a first plastid, and the second vector includes a second plastid, wherein the first plastid includes an encoded antibody or its The heavy chain, VH or VH+CH polynucleotide of the antigen-binding fragment, and the second plastid comprises the polynucleotide encoding the cognate light chain, VL or VL+CL. In certain embodiments, the composition comprises a polynucleotide (eg, mRNA) coupled to a suitable delivery vehicle or carrier. Exemplary vehicles or carriers for administration to human subjects include lipid or lipid source-derived delivery vehicles, such as liposomes, solid lipid nanoparticles, oily suspensions, submicron lipid emulsions, lipid microvesicles, Inverse lipid micelles, cochlear liposomes, lipid microtubules, lipid micropillars or lipid nanoparticles (LNPs) or nanoscale platforms (see e.g. Li et al. Wilery Interdiscip Rev. Nanomed Nanobiotechnol. 11(2):e1530 (2019)). Principles, reagents and techniques for designing appropriate mRNAs and formulating mRNA-LNPs and their delivery are described, for example, in Pardi et al. (J Control Release 217345-351 (2015)); Thess et al. (Mol Ther 23: 1456-1464 ( 2015)); Thran et al (EMBO Mol Med 9(10):1434-1448 (2017); et al (Sci. Immunol. 4 eaaw6647 (2019); and Sabnis et al (Mol. Ther. 26:1509-1519) (2018)), such techniques include capping, codon optimization, nucleoside modification, mRNA purification, incorporation of mRNA into stable lipid nanoparticles (e.g., ionizable cationic lipids/phosphatidylcholine/ Cholesterol/PEG-lipid; ionizable lipid: distearyl PC: cholesterol: polyethylene glycol lipid), and subcutaneous, intramuscular, intradermal, intravenous, intraperitoneal and intratracheal administration thereof, by reference Incorporated herein. Methods and uses
本文亦提供使用本揭露內容之抗體或抗原結合片段、核酸、載體、細胞或組成物來診斷SARS-CoV-2感染(例如,人類個體中或自人類個體獲得之樣品中)的方法。Also provided herein are methods of diagnosing SARS-CoV-2 infection (eg, in a human subject or in a sample obtained from a human subject) using the antibodies or antigen-binding fragments, nucleic acids, vectors, cells, or compositions of the present disclosure.
診斷方法(例如,活體外、活體外)可包括使抗體、抗體片段(例如,抗原結合片段)與樣品接觸。此類樣品可自個體分離,例如,獲自例如鼻腔通道、鼻竇腔、唾液腺、肺、肝臟、胰臟、腎臟、耳、眼睛、胎盤、消化道、心臟、卵巢、垂體、腎上腺、甲狀腺、腦、皮膚或血液之經分離組織樣品。診斷之方法亦可包括偵測抗原/抗體複合物,尤其在使抗體或抗體片段與樣品接觸之後。此類偵測步驟在實驗台上進行,亦即不與人類或動物身體有任何接觸。偵測方法之實例為熟習此項技術者所熟知,且包括例如酶聯結免疫吸附分析(ELISA),包括直接、間接及夾層ELISA。其他偵測方法包括(但不限於)免疫組織化學(IHC)、流式細胞測量術(例如,FACS)、西方墨點法、免疫細胞化學(ICC)、酶聯免疫點(ELISPOT)及免疫沈澱(IP)。用於偵測方法中之抗體及抗原結合片段可例如經螢光或以其他方式可偵測地標記(例如,直接與螢光團共軛或包含螢光團二級共軛物)。A diagnostic method (eg, in vitro, in vitro) can include contacting an antibody, antibody fragment (eg, an antigen-binding fragment) with a sample. Such samples can be isolated from an individual, eg, obtained from, eg, nasal passages, sinus cavities, salivary glands, lungs, liver, pancreas, kidneys, ears, eyes, placenta, digestive tract, heart, ovary, pituitary, adrenal gland, thyroid, brain , isolated tissue samples of skin or blood. Methods of diagnosis may also include detection of antigen/antibody complexes, especially after contacting the antibody or antibody fragment with the sample. Such detection steps are carried out on a laboratory bench, that is, without any contact with the human or animal body. Examples of detection methods are well known to those skilled in the art and include, for example, enzyme-linked immunosorbent assays (ELISAs), including direct, indirect, and sandwich ELISAs. Other detection methods include, but are not limited to, immunohistochemistry (IHC), flow cytometry (eg, FACS), western blotting, immunocytochemistry (ICC), enzyme-linked immunospot (ELISPOT), and immunoprecipitation (IP). Antibodies and antigen-binding fragments used in detection methods can be, for example, fluorescently or otherwise detectably labeled (eg, directly conjugated to a fluorophore or comprising a fluorophore secondary conjugate).
本文亦提供使用本揭露內容之抗體或抗原結合片段或包含該抗體或抗原結合片段之組成物治療個體之方法,其中該個體具有、被認為具有或處於患上SARS-CoV-2引起之感染的風險下。「治療(treat)」、「治療(treatment)」或「改善」係指個體(例如,人類或非人類哺乳動物,諸如靈長類動物、馬、貓、犬、山羊、小鼠或大鼠)之病症、疾病或病狀的醫學管理。一般而言,包含本揭露內容之抗體或組成物的適當劑量或治療方案係以足以引發治療效益或預防效益的量投予。治療性或預防性/預防性效益包括改進的臨床結果;減輕或緩解與疾病相關之症狀;減少症狀的發生;改進的生活品質;更長的無疾病狀態;疾病嚴重程度減輕;疾病病況之穩定;延緩或預防疾病進展;緩解;存活期;延長的存活期;或其任何組合。在某些實施例中,治療性或預防性/預防性效益包括減小或預防因治療SARS-CoV-2感染而住院(亦即,以統計學上顯著之方式)。在某些實施例中,治療性或預防性/預防性效益包括降低因治療SARS-CoV-2感染而住院的持續時間(亦即,以統計學上顯著之方式)。在某些實施例中,治療性或預防性/預防性效益包括降低或消除對呼吸干預,諸如插管及/或使用呼吸器裝置之需求。在某些實施例中,治療性或預防性/預防性效益包括晚期疾病病理學及/或減少之死亡率。Also provided herein are methods of using an antibody or antigen-binding fragment of the present disclosure, or a composition comprising the antibody or antigen-binding fragment, to treat a subject, wherein the subject has, is believed to have, or is at risk of developing an infection caused by SARS-CoV-2 under risk. "Treat," "treatment," or "amelioration" refers to an individual (eg, a human or non-human mammal, such as a primate, horse, cat, dog, goat, mouse, or rat) The medical management of the disorder, disease or condition of the patient. In general, an appropriate dose or treatment regimen comprising an antibody or composition of the present disclosure is administered in an amount sufficient to elicit a therapeutic or prophylactic benefit. Therapeutic or prophylactic/prophylactic benefits include improved clinical outcomes; alleviation or relief of disease-related symptoms; reduced occurrence of symptoms; improved quality of life; longer disease-free state; reduced disease severity; stabilization of disease condition ; delay or prevent disease progression; remission; survival; extended survival; or any combination thereof. In certain embodiments, a therapeutic or prophylactic/prophylactic benefit includes reducing or preventing (ie, in a statistically significant manner) hospitalizations for treatment of SARS-CoV-2 infection. In certain embodiments, the therapeutic or prophylactic/prophylactic benefit includes reducing the duration of hospitalization for treatment of SARS-CoV-2 infection (ie, in a statistically significant manner). In certain embodiments, the therapeutic or prophylactic/prophylactic benefit includes reducing or eliminating the need for respiratory interventions, such as intubation and/or use of a ventilator device. In certain embodiments, the therapeutic or prophylactic/prophylactic benefit includes advanced disease pathology and/or reduced mortality.
本揭露內容之抗體、抗原結合片段、聚核苷酸、載體、宿主細胞或組成物的「治療有效量」或「有效量」係指足以產生治療作用之該組成物或分子的量,該治療作用包括以統計學上顯著之方式改進的臨床結果;減輕或緩解與疾病相關之症狀;減少症狀的發生;改進的生活品質;更長的無疾病狀態;疾病嚴重程度減輕;疾病病況之穩定;延緩或預防疾病進展;緩解;存活期或延長的存活期。當提及單獨投予之個別活性成分時,治療有效量係指彼成分或單獨表現該成分之細胞的作用。當提及組合時,治療有效量係指不論連續、依次或同時投予,產生治療作用之活性成分或組合的輔助活性成分與表現活性成分之細胞的組合量。組合可包含例如特異性結合SARS-CoV-2抗原之二個不同抗體,其在某些實施例中可為相同或不同SARS-CoV-2抗原,及/或可包含相同或不同表位。A "therapeutically effective amount" or "effective amount" of an antibody, antigen-binding fragment, polynucleotide, vector, host cell, or composition of the present disclosure refers to an amount of the composition or molecule sufficient to produce a therapeutic effect, and the treatment Effects include improved clinical outcomes in a statistically significant manner; alleviation or alleviation of disease-related symptoms; reduction in the occurrence of symptoms; improved quality of life; longer disease-free state; reduction in disease severity; stabilization of disease condition; Delay or prevent disease progression; remission; survival or prolonged survival. When referring to an individual active ingredient administered alone, a therapeutically effective amount refers to the effect of that ingredient or the cells that express that ingredient alone. When referring to a combination, a therapeutically effective amount refers to the combined amount of the active ingredient that produces the therapeutic effect or the combined adjunct active ingredient and the cells expressing the active ingredient, whether administered consecutively, sequentially or simultaneously. A combination can comprise, for example, two different antibodies that specifically bind to a SARS-CoV-2 antigen, which in certain embodiments can be the same or different SARS-CoV-2 antigens, and/or can comprise the same or different epitopes.
因此,在某些實施例中,提供用於治療個體之SARS-CoV-2感染的方法,其中該等方法包含向該個體投予如本文中所揭露之有效量之抗體、抗原結合片段、聚核苷酸、載體、宿主細胞或組成物。Accordingly, in certain embodiments, methods are provided for treating a SARS-CoV-2 infection in an individual, wherein the methods comprise administering to the individual an effective amount of an antibody, antigen-binding fragment, poly(antigen-binding fragment) as disclosed herein. Nucleotides, vectors, host cells or compositions.
一般而言,可藉由本揭露內容治療之個體為人類及其他靈長類動物個體,諸如用於獸醫學目的之猴及猿。諸如小鼠及大鼠之其他模型生物亦可根據本揭露內容治療。在前述實施例中之任一者中,個體可為人類個體。個體可為雄性或雌性且可為任何適齡個體,包括嬰兒、幼年、青年、成年及老年。In general, subjects that can be treated by the present disclosure are human and other primate subjects, such as monkeys and apes used for veterinary purposes. Other model organisms such as mice and rats can also be treated in accordance with the present disclosure. In any of the foregoing embodiments, the individual may be a human individual. An individual can be male or female and can be any age-appropriate individual, including infants, juveniles, youth, adults and old age.
咸信多個準則引起與SARS CoV-2感染相關之重度症狀或死亡的較高風險。此等包括(但不限於)年齡、職業、一般健康、預先存在之健康狀況及生活方式習慣。在一些實施例中,根據本揭露內容治療之個體包含一或多種風險因子。It is believed that multiple criteria lead to a higher risk of severe symptoms or death associated with SARS CoV-2 infection. These include, but are not limited to, age, occupation, general health, pre-existing health conditions and lifestyle habits. In some embodiments, an individual treated in accordance with the present disclosure comprises one or more risk factors.
在某些實施例中,根據本揭露內容治療之人類個體為嬰兒、兒童、青少年、中年及老年個體。在某些實施例中,根據本揭露內容治療之人類個體低於1歲、或為1至5歲、或在5與125歲之間(例如,5、10、15、20、25、30、35、40、45、50、55、60、65、70、75、80、85、90、95、100、105、110、115或125歲,包括其中或其間之任何及所有年齡)。在某些實施例中,根據本揭露內容治療之人類個體為0-19歲、20-44歲、45-54歲、55-64歲、65-74歲、75-84歲或85歲,或更大年齡。咸信,中年個體,及尤其老年個體具有特定風險。在特定實施例中,人類個體為45-54歲、55-64歲、65-74歲、75-84歲或85歲,或更大年齡。在一些實施例中,人類個體為生物上男性。在一些實施例中,人類個體為生物學上女性。In certain embodiments, human subjects treated in accordance with the present disclosure are infants, children, adolescents, middle-aged and elderly individuals. In certain embodiments, the human subject treated in accordance with the present disclosure is less than 1 year old, or 1 to 5 years old, or between 5 and 125 years old (eg, 5, 10, 15, 20, 25, 30, 35, 40, 45, 50, 55, 60, 65, 70, 75, 80, 85, 90, 95, 100, 105, 110, 115 or 125 years of age, including any and all ages in between). In certain embodiments, the human subject treated in accordance with the present disclosure is 0-19 years old, 20-44 years old, 45-54 years old, 55-64 years old, 65-74 years old, 75-84 years old, or 85 years old, or older age. It is believed that middle-aged individuals, and especially older individuals, are at particular risk. In certain embodiments, the human subject is 45-54 years old, 55-64 years old, 65-74 years old, 75-84 years old or 85 years old, or older. In some embodiments, the human subject is biologically male. In some embodiments, the human subject is biologically female.
在某些實施例中,根據本揭露內容治療之人類個體為護理之家或長期照護設施的居住者;為臨終關懷照護工作者;為健康照護提供者或健康照護工作者;為第一線救護人員;為經診斷具有或疑似具有SARS-CoV-2感染之個體的家族成員或其他密切接觸者;為超重或臨床上肥胖;為或曾經為吸菸者;具有或曾具有慢性阻塞性肺病(COPD);為氣喘(例如,具有中度至重度氣喘);具有自體免疫疾病或病狀(例如,糖尿病);及/或具有受損或耗乏的免疫系統(例如,歸因於AIDS/HIV感染,癌症,諸如血液癌症,淋巴細胞耗竭(lymphodepleting)療法,諸如化療,骨髓或器官移植,或基因免疫病狀);具有慢性肝病;具有心血管疾病;具有肺病或心臟病;與他人一起工作或以其他方式近距離接觸,諸如在工廠、運輸中心、醫院環境或其類似環境中。In certain embodiments, the human subject treated in accordance with the present disclosure is a resident of a nursing home or long-term care facility; is a hospice care worker; is a health care provider or health care worker; be a family member or other close contact of an individual diagnosed with or suspected of having SARS-CoV-2 infection; be overweight or clinically obese; be or have been a smoker; have or have had chronic obstructive pulmonary disease ( COPD); is asthmatic (eg, with moderate-to-severe asthma); has an autoimmune disease or condition (eg, diabetes); and/or has a compromised or depleted immune system (eg, due to AIDS/ HIV infection, cancer such as blood cancer, lymphodepleting therapy such as chemotherapy, bone marrow or organ transplantation, or genetic immune conditions); having chronic liver disease; having cardiovascular disease; having lung or heart disease; with others Work or otherwise come into close contact, such as in a factory, transportation center, hospital setting, or the like.
在某些實施例中,根據本揭露內容治療之個體已接受針對SARS-CoV-2之疫苗,且該疫苗藉由臨床診斷或科學或法規共識,例如藉由該個體之疫苗後感染或症狀確定為無效的(亦即,至少部分或完全無效的)。In certain embodiments, an individual treated in accordance with the present disclosure has received a vaccine against SARS-CoV-2, and the vaccine is determined by clinical diagnosis or scientific or regulatory consensus, such as by post-vaccination infection or symptoms in the individual is invalid (ie, at least partially or completely invalid).
在某些實施例中,治療係作為暴露期間預防投予。在某些實施例中,向具有輕度至中度疾病之個體,其可在門診環境中,投予治療。在某些實施例中,向具有中度至重度疾病,諸如需要住院之個體投予治療。In certain embodiments, treatment is administered as prophylaxis during exposure. In certain embodiments, treatment is administered to individuals with mild to moderate disease, who can be administered in an outpatient setting. In certain embodiments, treatment is administered to individuals with moderate to severe disease, such as requiring hospitalization.
投予本發明所揭露之組成物之典型途徑包括(但不限於)經口、局部、經皮、吸入、非經腸、舌下、經頰、經直腸、經陰道及鼻內。如本文所用,術語「非經腸」包括皮下注射、靜脈內、肌肉內、胸骨內注射或輸注技術。在某些實施例中,投予包含藉由選自以下之途徑投予:經口、靜脈內、非經腸、胃內、胸膜內、肺內、直腸內、皮內、腹膜內、瘤內、皮下、局部、經皮、腦池內、鞘內、鼻內及肌肉內。在特定實施例中,方法包含向個體經口投予該抗體、抗原結合片段、聚核苷酸、載體、宿主細胞或組成物。Typical routes of administration of the compositions disclosed herein include, but are not limited to, oral, topical, transdermal, inhalation, parenteral, sublingual, buccal, rectal, vaginal, and intranasal. As used herein, the term "parenteral" includes subcutaneous injection, intravenous, intramuscular, intrasternal injection or infusion techniques. In certain embodiments, administering comprises administering by a route selected from the group consisting of oral, intravenous, parenteral, intragastric, intrapleural, intrapulmonary, intrarectal, intradermal, intraperitoneal, intratumoral , subcutaneous, topical, percutaneous, intracisternal, intrathecal, intranasal and intramuscular. In certain embodiments, the method comprises orally administering the antibody, antigen-binding fragment, polynucleotide, vector, host cell or composition to an individual.
調配根據本發明之某些實施例之醫藥組成物以使得含於其中之活性成分在向患者投予該組成物後為生物可用的。將投予個體或患者之組成物可呈一或多個劑量單元之形式,其中例如錠劑可為單一劑量單元,且本文所述之呈霧劑形式之抗體或抗原結合的容器可容納多個劑量單元。製備此類劑型之實際方法對熟習此項技術者為已知的或將為顯而易見的;舉例而言,參見Remington: The Science and Practice of Pharmacy,第20版(Philadelphia College of Pharmacy and Science, 2000)。待投予之組成物將在任何情況下含有有效量之本揭露內容之抗體或抗原結合片段、聚核苷酸、載體、宿主細胞或組成物,以根據本文中之教示治療感興趣的疾病或病狀。Pharmaceutical compositions according to certain embodiments of the present invention are formulated such that the active ingredient contained therein is bioavailable upon administration of the composition to a patient. The composition to be administered to an individual or patient can be in the form of one or more dosage units, wherein, for example, a lozenge can be a single dosage unit, and the antibody or antigen-binding containers described herein in aerosol form can hold multiple dosage unit. Actual methods of preparing such dosage forms are known or will be apparent to those skilled in the art; see, for example, Remington: The Science and Practice of Pharmacy, 20th Ed. (Philadelphia College of Pharmacy and Science, 2000) . The composition to be administered will in any event contain an effective amount of an antibody or antigen-binding fragment, polynucleotide, vector, host cell or composition of the disclosure to treat a disease of interest or a composition in accordance with the teachings herein. Symptoms.
組成物可呈固體或液體形式。在一些實施例中,載劑為粒子,以使得組成物例如呈錠劑或散劑形式。一或多種載劑可為液體,並且組成物為例如口服油、可注射液體或適用於例如吸入投予之霧劑。當意欲經口投予時,醫藥組成物較佳為固體或液體形式,其中半固體、半液體、懸浮液及凝膠形式包括在本文視為固體或液體之形式內。The composition can be in solid or liquid form. In some embodiments, the carrier is a particle, such that the composition is in the form of a tablet or powder, for example. The carrier or carriers can be liquids and the compositions are, for example, oral oils, injectable liquids, or aerosols suitable for administration, eg, by inhalation. When intended for oral administration, the pharmaceutical composition is preferably in solid or liquid form, with semi-solid, semi-liquid, suspension, and gel forms included within forms considered herein to be solid or liquid.
作為用於經口投予之固體組成物,醫藥組成物可調配成散劑、顆粒、壓縮錠劑、丸劑、膠囊、口嚼錠、粉片或其類似物。此類固體組成物將通常含有一或多種惰性稀釋劑或可食載劑。另外,可存在以下中之一或多者:黏合劑,諸如羧甲基纖維素、乙基纖維素、微晶纖維素、黃蓍膠或明膠;賦形劑,諸如澱粉、乳糖或糊精;崩解劑,諸如海藻酸、海藻酸鈉、澱粉羥基乙酸鈉(Primogel)、玉米澱粉及其類似物;潤滑劑,諸如硬脂酸鎂或氫化植物油(Sterotex);助滑劑,諸如膠態二氧化矽;甜味劑,諸如蔗糖或糖精;調味劑,諸如胡椒薄荷、水楊酸甲酯或柑橘調味劑;及著色劑。當該組成物呈膠囊(例如,明膠膠囊)形式時,除以上類型之物質之外,其可含有諸如聚乙二醇或油之液體載劑。As a solid composition for oral administration, the pharmaceutical composition can be formulated into powders, granules, compressed tablets, pills, capsules, chewable tablets, powder tablets or the like. Such solid compositions will generally contain one or more inert diluents or edible carriers. Additionally, one or more of the following may be present: binders such as carboxymethyl cellulose, ethyl cellulose, microcrystalline cellulose, tragacanth or gelatin; excipients such as starch, lactose or dextrin; Disintegrants such as alginic acid, sodium alginate, sodium starch glycolate (Primogel), corn starch and the like; lubricants such as magnesium stearate or hydrogenated vegetable oils (Sterotex); slip agents such as colloidal dimethacrylate Silicon oxide; sweeteners such as sucrose or saccharin; flavoring agents such as peppermint, methyl salicylate, or citrus flavoring; and coloring agents. When the composition is in the form of a capsule (eg, a gelatin capsule), it may contain, in addition to materials of the above type, a liquid carrier such as polyethylene glycol or an oil.
該組成物可呈液體形式,例如酏劑、糖漿、溶液、乳液或懸浮液。舉二個例子而言,液體可用於經口投予或用於藉由注射遞送。當意欲用於經口投予時,較佳組成物除本發明之化合物之外亦含有甜味劑、防腐劑、染料/著色劑及香味增強劑中之一或多者。在意欲藉由注射投藥之組成物中,可包括界面活性劑、防腐劑、濕潤劑、分散劑、懸浮劑、緩衝劑、穩定劑及等張劑中之一或多者。The composition may be in liquid form, such as an elixir, syrup, solution, emulsion or suspension. Liquids can be used for oral administration or for delivery by injection, to name two examples. When intended for oral administration, preferred compositions contain, in addition to the compounds of the present invention, one or more of sweeteners, preservatives, dyes/colorants and flavor enhancers. In compositions intended for administration by injection, one or more of surfactants, preservatives, wetting agents, dispersing agents, suspending agents, buffers, stabilizers and isotonic agents may be included.
液體醫藥組成物,無論其為溶液、懸浮液或其他類似形式,均可包括以下佐劑中之一或多者:無菌稀釋劑,諸如注射用水,生理食鹽水溶液,較佳生理鹽水,林格氏溶液(Ringer's solution),等張氯化鈉,不揮發性油,諸如可充當溶劑或懸浮介質之合成單酸甘油酯或二酸甘油酯,聚乙二醇,丙三醇,丙二醇或其他溶劑;抗細菌劑,諸如苯甲醇或對羥基苯甲酸甲酯;抗氧化劑,諸如抗壞血酸或亞硫酸氫鈉;螯合劑,諸如乙二胺四乙酸;緩衝劑,諸如乙酸鹽、檸檬酸鹽或磷酸鹽;及張力調節劑,諸如氯化鈉或右旋糖。非經腸製劑可封裝於由玻璃或塑膠製成之安瓿、拋棄式注射器或多劑量小瓶中。生理鹽水係較佳佐劑。可注射醫藥組成物較佳地為無菌的。Liquid pharmaceutical compositions, whether in solution, suspension, or other similar form, may include one or more of the following adjuvants: sterile diluents, such as water for injection, saline solution, preferably saline, Ringer's Ringer's solution, isotonic sodium chloride, fixed oils such as synthetic mono- or diglycerides, polyethylene glycol, glycerol, propylene glycol or other solvents which can act as a solvent or suspending medium; Antibacterial agents such as benzyl alcohol or methylparaben; antioxidants such as ascorbic acid or sodium bisulfite; chelating agents such as EDTA; buffers such as acetate, citrate or phosphate; and tonicity modifiers such as sodium chloride or dextrose. Parenteral preparations can be enclosed in ampoules, disposable syringes or multiple dose vials made of glass or plastic. Physiological saline is the preferred adjuvant. Injectable pharmaceutical compositions are preferably sterile.
意欲用於非經腸或經口投予之液態組成物應含有一定量的如本文所揭露之抗體或抗原結合片段以使得將獲得適合之劑量。通常,此量為組成物中之至少0.01%的抗體或抗原結合片段。當意欲用於經口投予時,此量可在0.1%與約70%組成物重量之間變化。某些經口醫藥組成物含有約4%與約75%之間的抗體或抗原結合片段。在某些實施例中,製備根據本發明之醫藥組成物及製劑以使得非經腸劑量單元在稀釋之前含有0.01至10重量%之間的抗體或抗原結合片段。Liquid compositions intended for parenteral or oral administration should contain an antibody or antigen-binding fragment as disclosed herein in an amount such that a suitable dosage will be obtained. Typically, this amount is at least 0.01% of the antibody or antigen-binding fragment in the composition. When intended for oral administration, this amount can vary between 0.1% and about 70% by weight of the composition. Certain oral pharmaceutical compositions contain between about 4% and about 75% antibody or antigen-binding fragment. In certain embodiments, pharmaceutical compositions and formulations according to the present invention are prepared such that a parenteral dosage unit contains between 0.01 and 10% by weight of the antibody or antigen-binding fragment prior to dilution.
該組成物可意欲局部投予,在此情況下載劑可適合地包含溶液、乳液、軟膏或凝膠基質。舉例而言,基質可包含以下中之一或多者:石蠟脂、羊毛蠟、聚乙二醇、蜂蠟、礦物油、稀釋劑(諸如水及醇)及乳化劑以及穩定劑。增稠劑可存在於組成物中以用於局部投予。若意欲用於經皮投藥,則組成物可包括經皮貼片或離子電滲療法(iontophoresis)裝置。醫藥組成物可意欲用於以例如栓劑形式經直腸投藥,該栓劑將在直腸中熔融且釋放藥物。用於經直腸投予之組成物可含有油性基質作為適合之無刺激性賦形劑。此類基質包括(但不限於)羊毛蠟、可可脂及聚乙二醇。The composition may be intended for topical administration, in which case the vehicle may suitably comprise a solution, emulsion, ointment or gel base. For example, the base may comprise one or more of the following: paraffin grease, wool wax, polyethylene glycol, beeswax, mineral oil, diluents such as water and alcohol, and emulsifiers and stabilizers. Thickening agents can be present in the composition for topical administration. If intended for transdermal administration, the composition may comprise a transdermal patch or an iontophoresis device. The pharmaceutical composition may be intended for rectal administration, eg, in the form of a suppository that will melt in the rectum and release the drug. Compositions for rectal administration may contain an oily base as a suitable non-irritating excipient. Such bases include, but are not limited to, wool wax, cocoa butter, and polyethylene glycols.
組成物可包括各種材料,該等材料改變固體或液體劑量單元之物理形式。舉例而言,組成物可包括圍繞活性成分形成包覆殼層之材料。形成包覆殼層之材料通常為惰性的,且可選自例如糖、蟲膠及其他腸溶包覆劑。或者,活性成分可裝入明膠膠囊中。呈固體或液體形式之該組成物可包括結合至本揭露內容之抗體或抗原結合片段,且藉此幫助遞送化合物之試劑。可起此能力作用之適合試劑包括單株或多株抗體、一或多種蛋白質或脂質體。該組成物可基本上由可以霧劑形式投予之劑量單元組成。術語氣溶膠用於表示介於膠態性質之彼等系統至由加壓封裝組成之系統範圍內的多種系統。遞送可藉由液化或壓縮氣體或藉由分配活性成分的適合之泵系統。氣溶膠可以單相、雙相或三相系統形式遞送以遞送活性成分。氣霧劑之遞送包括必需容器、活化劑、閥門、次容器及其類似物,其在一起可形成套組。一般熟習此項技術者在不進行過度實驗的情況下即可確定較佳氣溶膠。The composition can include various materials that alter the physical form of the solid or liquid dosage unit. For example, the composition may include a material that forms a coating around the active ingredient. The material forming the coating shell is generally inert and can be selected from, for example, sugar, shellac and other enteric coating agents. Alternatively, the active ingredient may be enclosed in gelatin capsules. The composition, in solid or liquid form, can include an agent that binds to the antibody or antigen-binding fragment of the present disclosure, and thereby aids in delivery of the compound. Suitable agents that can exert this ability include monoclonal or polyclonal antibodies, one or more proteins, or liposomes. The composition may consist essentially of dosage units which can be administered in the form of aerosols. The term aerosol is used to denote a variety of systems ranging from those systems of colloidal nature to those consisting of pressurized packaging. Delivery can be by liquefied or compressed gas or by a suitable pump system that dispenses the active ingredient. Aerosols can be delivered in monophasic, biphasic or triphasic systems to deliver active ingredients. Delivery of an aerosol includes the necessary container, activator, valve, sub-container, and the like, which together can form a kit. Those skilled in the art can generally determine the preferred aerosol without undue experimentation.
應理解,本揭露內容之組成物亦涵蓋用於本文所述之聚核苷酸的載劑分子(例如,脂質奈米粒子、奈米尺度遞送平台及其類似物)。It is to be understood that the compositions of the present disclosure also encompass carrier molecules (eg, lipid nanoparticles, nanoscale delivery platforms, and the like) for the polynucleotides described herein.
醫藥組成物可藉由醫藥技術中熟知之方法製備。舉例而言,意欲藉由注射投予之組成物可藉由將包含如本文所述之抗體、其抗原結合片段或抗體共軛物及任擇地,鹽、緩衝液及/或穩定劑中之一或多者的組成物與無菌蒸餾水組合以形成溶液來製備。可添加界面活性劑以促進形成均勻溶液或懸浮液。界面活性劑為與肽組成物非共價相互作用,以促進抗體或其抗原結合片段在水性遞送系統中之溶解或均勻懸浮的化合物。Pharmaceutical compositions can be prepared by methods well known in the medical art. For example, a composition intended to be administered by injection may be prepared by incorporating an antibody, antigen-binding fragment or antibody conjugate thereof as described herein, and optionally, in a salt, buffer, and/or stabilizer. One or more of the compositions are prepared by combining with sterile distilled water to form a solution. Surfactants can be added to facilitate the formation of a homogeneous solution or suspension. Surfactants are compounds that non-covalently interact with peptide compositions to facilitate solubilization or uniform suspension of antibodies or antigen-binding fragments thereof in aqueous delivery systems.
一般而言,適當劑量及治療方案提供呈足以提供治療及/或預防效益(諸如本文所述,包括改進的臨床結果(例如,腹瀉或相關脫水或發炎之頻率、持續時間或嚴重程度降低,或更長的無疾病期及/或總存活期,或症狀嚴重程度減輕)之量的組成物。對於預防用途,劑量應足以預防與疾病或病症相關之疾病、延遲其發作或減輕其嚴重程度。根據本文所述之方法投予之組成物的預防效益可藉由進行臨床前(包括活體外及活體內動物研究)及臨床研究,且藉由適當的統計、生物學及臨床方法及技術分析自其得到的資料確定,其皆可藉由熟習此項技術者容易地實踐。In general, appropriate dosages and treatment regimens provide a dose sufficient to provide therapeutic and/or prophylactic benefits (such as those described herein, including improved clinical outcomes (eg, reduced frequency, duration, or severity of diarrhea or associated dehydration or inflammation, or longer disease-free and/or overall survival, or reduced severity of symptoms) of the composition. For prophylactic use, the dosage should be sufficient to prevent, delay the onset, or reduce the severity of the disease associated with the disease or disorder. The prophylactic benefit of the compositions administered according to the methods described herein can be obtained by conducting preclinical (including in vitro and in vivo animal studies) and clinical studies, and by analysis of the self by appropriate statistical, biological and clinical methods and techniques. It is determined from the data obtained that it can be easily practiced by those skilled in the art.
組成物以有效量投予(例如以治療冠狀病毒感染),該有效量將視包括以下之多種因素而變化:所採用之特定化合物的活性;該化合物之代謝穩定性及作用時長;個體之年齡、體重、一般健康狀況、性別及膳食;投予模式及時間;排泄速率;藥物組合;特定病症或病狀之嚴重性;及經歷療法之個體。在某些實施例中,在根據本揭露內容之調配物及方法投予療法之後,與經安慰劑處理或其他適合之對照個體相比,測試個體將展現出與疾病或病症相關之一或多個症狀的約10%至多約99%減少。The composition is administered in an effective amount (eg, to treat a coronavirus infection), which will vary depending on a number of factors including: the activity of the particular compound employed; the metabolic stability and duration of action of the compound; Age, weight, general health, gender, and diet; mode and time of administration; rate of excretion; drug combination; severity of particular disorder or condition; and individuals undergoing therapy. In certain embodiments, following administration of therapy in accordance with the formulations and methods of the present disclosure, test subjects will exhibit one or more associated with a disease or disorder compared to placebo-treated or other suitable control subjects About 10% up to about 99% reduction in symptoms.
通常,抗體或抗原結合片段之治療有效日劑量為(對於70 kg哺乳動物)約0.001 mg/kg (亦即,0.07 mg)至約100 mg/kg (亦即,7.0 g);較佳治療有效劑量為(對於70 kg哺乳動物)約0.01 mg/kg (亦即,0.7 mg)至約50 mg/kg (亦即,3.5 g);更佳治療有效劑量為(對於70 kg哺乳動物)約1 mg/kg (亦即,70 mg)至約25 mg/kg (亦即,1.75 g)。對於本揭露內容之聚核苷酸、載體、宿主細胞及相關組成物,治療有效劑量可不同於抗體或抗原結合片段之治療有效劑量。Typically, a therapeutically effective daily dose of antibody or antigen-binding fragment is (for a 70 kg mammal) about 0.001 mg/kg (ie, 0.07 mg) to about 100 mg/kg (ie, 7.0 g); preferably therapeutically effective The dose is (for a 70 kg mammal) about 0.01 mg/kg (ie, 0.7 mg) to about 50 mg/kg (ie, 3.5 g); a more preferred therapeutically effective dose is (for a 70 kg mammal) about 1 mg/kg (ie, 70 mg) to about 25 mg/kg (ie, 1.75 g). For the polynucleotides, vectors, host cells, and related compositions of the present disclosure, the therapeutically effective dose can be different from the therapeutically effective dose of the antibody or antigen-binding fragment.
在某些實施例中,方法包含向個體投予該抗體、抗原結合片段、聚核苷酸、載體、宿主細胞或組成物2、3、4、5、6、7、8、9、10次或更多次。In certain embodiments, the method comprises administering the antibody, antigen-binding fragment, polynucleotide, vector, host cell or composition to the
在某些實施例中,方法包含向個體投予該抗體、抗原結合片段或組成物多次,其中第二次或連續投予係分別在第一次或先前投予之後約6、約7、約8、約9、約10、約11、約12、約24、約48、約74、約96小時或更久時進行。In certain embodiments, the method comprises administering the antibody, antigen-binding fragment, or composition multiple times to the subject, wherein the second or consecutive administrations are about 6, about 7, About 8, about 9, about 10, about 11, about 12, about 24, about 48, about 74, about 96 hours or more.
在某些實施例中,方法包含在個體經SARS-CoV-2引起之感染之前投予該抗體、抗原結合片段、聚核苷酸、載體、宿主細胞或組成物至少一次。In certain embodiments, the methods comprise administering the antibody, antigen-binding fragment, polynucleotide, vector, host cell or composition at least once prior to infection of the individual by SARS-CoV-2.
包含本揭露內容之抗體、抗原結合片段、聚核苷酸、載體、宿主細胞或組成物的組成物亦可與一或多種其他治療劑之投予同時、在其之前或在其之後。此類組合療法可包括投予含有本發明化合物及一或多個額外活性劑之單一醫藥劑型調配物,以及投予包含本揭露內容之抗體或抗原結合片段的組成物,且各活性劑呈其自身單獨劑型調配物形式。舉例而言,如本文所述之抗體或其抗原結合片段及其他活性劑可以單一口服劑量組成物,諸如錠劑或膠囊一同向患者投予,或投予之各藥劑呈單獨口服劑量調配物形式。類似地,如本文所述之抗體或抗原結合片段及其他活性劑可呈單一非經腸劑量組成物(諸如在生理食鹽水溶液或其他生理學上可接受之溶液中)一起向個體投予,或投予之各藥劑呈單獨非經腸劑量調配物形式。當使用單獨劑量調配物時,包含抗體或抗原結合片段及一或多個額外活性劑之組成物可基本上同時,亦即並行地投予,或在單獨交錯的時間,亦即依次及以任何次序投予;組合療法應理解為包括所有此等方案。Compositions comprising antibodies, antigen-binding fragments, polynucleotides, vectors, host cells, or compositions of the present disclosure may also be administered concurrently with, prior to, or subsequent to administration of one or more other therapeutic agents. Such combination therapy may include administration of a single pharmaceutical dosage form formulation containing a compound of the present invention and one or more additional active agents, as well as administration of a composition comprising an antibody or antigen-binding fragment of the present disclosure, with each active agent in its In the form of a separate dosage formulation on its own. For example, an antibody or antigen-binding fragment thereof and other active agents as described herein can be administered to a patient together in a single oral dosage composition, such as a lozenge or capsule, or each agent administered as a separate oral dosage formulation . Similarly, antibodies or antigen-binding fragments as described herein and other active agents can be administered to an individual together in a single parenteral dosage composition, such as in physiological saline solution or other physiologically acceptable solution, or Each agent is administered as a separate parenteral dosage formulation. When separate dosage formulations are used, the composition comprising the antibody or antigen-binding fragment and one or more additional active agents may be administered substantially simultaneously, that is, concurrently, or at separately staggered times, that is, sequentially and in any Sequential administration; combination therapy is understood to include all such regimens.
在某些實施例中,提供一種組合療法,其包含本揭露內容之一或多個抗薩貝冠狀病毒抗體,諸如抗SARS-CoV-2抗體(或一或多個核酸、宿主細胞、載體或組成物)及一或多個消炎劑及/或一或多個抗病毒劑。在特定實施例中,該一或多個抗炎劑包含皮質類固醇,諸如地塞米松、普賴松或其類似物。在一些實施例中,一或多個抗炎劑包含細胞介素拮抗劑,諸如結合至IL6 (諸如司妥昔單抗),或結合至IL-6R (諸如,托珠單抗),或結合至IL-1β、IL-7、IL-8、IL-9、IL-10、FGF、G-CSF、GM-CSF、IFN-γ、IP-10、MCP-1、MIP-1A、MIP1-B、PDGR、TNF-α或VEGF之抗體。在一些實施例中,使用抗炎劑,諸如盧利替尼及/或阿那白滯素(anakinra)。在一些實施例中,一或多個抗病毒劑包含核苷酸類似物或核苷酸模擬前藥,諸如瑞德西韋、索非布韋、無環鳥苷(acyclovir)及齊多夫定(zidovudine)。在特定實施例中,抗病毒藥劑包含咯匹那韋(lopinavir)、利托那韋(ritonavir)、法維拉韋或其任何組合。在一些實施例中,組合療法包含勒隆利單抗。用於本揭露內容之組合療法之抗炎劑亦包括非類固醇抗炎藥(NSAIDS)。應瞭解,在此類組合療法中,一或多個抗體(或一或多個核酸、宿主細胞、載體或組成物)及一或多個抗炎劑及/或一或多個抗病毒劑可以任何次序及任何順序或一起投予。In certain embodiments, there is provided a combination therapy comprising one or more anti-Sabe coronavirus antibodies of the present disclosure, such as an anti-SARS-CoV-2 antibody (or one or more nucleic acids, host cells, vectors or composition) and one or more anti-inflammatory agents and/or one or more antiviral agents. In certain embodiments, the one or more anti-inflammatory agents comprise a corticosteroid, such as dexamethasone, prisone, or an analog thereof. In some embodiments, the one or more anti-inflammatory agents comprise a cytokine antagonist, such as that binds to IL6 (such as srtuximab), or binds to IL-6R (such as tocilizumab), or binds To IL-1β, IL-7, IL-8, IL-9, IL-10, FGF, G-CSF, GM-CSF, IFN-γ, IP-10, MCP-1, MIP-1A, MIP1-B , PDGR, TNF-α or VEGF antibody. In some embodiments, anti-inflammatory agents such as rulitinib and/or anakinra are used. In some embodiments, the one or more antiviral agents comprise nucleotide analogs or nucleotide mimic prodrugs, such as remdesivir, sofosbuvir, acyclovir, and zidovudine (zidovudine). In particular embodiments, the antiviral agent comprises lopinavir, ritonavir, favipiravir, or any combination thereof. In some embodiments, the combination therapy comprises lelonimab. Anti-inflammatory agents used in combination therapy of the present disclosure also include non-steroidal anti-inflammatory drugs (NSAIDS). It will be appreciated that in such combination therapy, one or more antibodies (or one or more nucleic acids, host cells, vectors or compositions) and one or more anti-inflammatory and/or one or more antiviral agents may Administered in any order and in any order or together.
在一些實施例中,向先前已接受一或多個抗炎劑及/或一或多個抗病毒劑之個體投予抗體(或一或多個核酸、宿主細胞、載體或組成物)。在一些實施例中,向先前已接受抗體(或一或多個核酸、宿主細胞、載體或組成物)個體投予一或多個抗炎劑及/或一或多個抗病毒劑。In some embodiments, the antibody (or one or more nucleic acids, host cells, vectors, or compositions) is administered to an individual who has previously received one or more anti-inflammatory agents and/or one or more antiviral agents. In some embodiments, one or more anti-inflammatory agents and/or one or more antiviral agents are administered to an individual who has previously received the antibody (or one or more nucleic acids, host cells, vectors, or compositions).
在某些實施例中,提供一種組合療法,其包含二個或更多個抗SARS-CoV-2抗體,其中任一者或二者可為本揭露內容之抗體。一種方法可包含向已接受第二抗體之個體投予第一抗體,或可包含一起投予二個或更多個抗體。舉例而言,在特定實施例中,提供一種方法,其包含向個體投予(a)第一抗體或抗原結合片段,當該個體已接受第二抗體或抗原結合片段時;(b)第二抗體或抗原結合片段,當該個體已接受第一抗體或抗原結合片段時;或(c)第一抗體或抗原結合片段,及第二抗體或抗原結合片段。In certain embodiments, there is provided a combination therapy comprising two or more anti-SARS-CoV-2 antibodies, either or both of which may be antibodies of the disclosure. A method may comprise administering the first antibody to an individual who has received the second antibody, or may comprise administering two or more antibodies together. For example, in certain embodiments, there is provided a method comprising administering to an individual (a) a first antibody or antigen-binding fragment, when the individual has received a second antibody or antigen-binding fragment; (b) a second antibody or antigen-binding fragment; An antibody or antigen-binding fragment, when the individual has received the first antibody or antigen-binding fragment; or (c) the first antibody or antigen-binding fragment, and the second antibody or antigen-binding fragment.
在一些實施例中,任何本發明所揭露之抗體可用於治療或預防SARS-CoV-2感染之方法中,其中該方法進一步包含使用包含以下之抗體或抗原結合片段:(i)如分別SEQ ID NO.:343-345及347-349中所闡述之CDRH1、CDRH2、CDRH3、CDRL1、CDRL2及CDRL3胺基酸序列;或(ii)如分別SEQ ID NO.:140-142及144-146中所闡述之CDRH1、CDRH2、CDRH3、CDRL1、CDRL2及CDRL3胺基酸序列;或(iii)如分別SEQ ID NO.:342及346中所闡述之VH及VL胺基酸序列;或(iv)如分別SEQ ID NO.:139及143中所闡述之VH及VL胺基酸序列。In some embodiments, any of the antibodies disclosed herein can be used in a method of treating or preventing SARS-CoV-2 infection, wherein the method further comprises using an antibody or antigen-binding fragment comprising: (i) as SEQ ID, respectively The CDRH1, CDRH2, CDRH3, CDRL1, CDRL2 and CDRL3 amino acid sequences set forth in NO.: 343-345 and 347-349; or (ii) as set forth in SEQ ID NO.: 140-142 and 144-146, respectively The CDRH1, CDRH2, CDRH3, CDRL1, CDRL2, and CDRL3 amino acid sequences as set forth; or (iii) the VH and VL amino acid sequences as set forth in SEQ ID NO.: 342 and 346, respectively; or (iv) as set forth in SEQ ID NO.: 342 and 346, respectively VH and VL amino acid sequences set forth in SEQ ID NO.: 139 and 143.
在一相關態樣中,提供本發明所揭露之抗體、抗原結合片段、載體、宿主細胞及組成物之用途。In a related aspect, uses of the disclosed antibodies, antigen-binding fragments, vectors, host cells, and compositions are provided.
在某些實施例中,提供抗體、抗原結合片段、聚核苷酸、載體、宿主細胞或組成物用於治療個體之SARS-CoV-2感染的方法中。In certain embodiments, antibodies, antigen-binding fragments, polynucleotides, vectors, host cells or compositions are provided for use in a method of treating a SARS-CoV-2 infection in an individual.
在某些實施例中,提供抗體、抗原結合片段或組成物用於製造或製備用以治療個體之SARS-CoV-2感染之藥劑的方法中。In certain embodiments, antibodies, antigen-binding fragments or compositions are provided for use in a method of making or preparing a medicament for the treatment of SARS-CoV-2 infection in an individual.
本揭露內容亦提供以下實施例:The present disclosure also provides the following examples:
實施例1.一種抗體或其抗原結合片段,其包含重鏈可變域(VH)及輕鏈可變域(VL),該重鏈可變域(VH)包含CDRH1、CDRH2及CDRH3,且該輕鏈可變域(VL)包含CDRL1、CDRL2及CDRL3,其中:
(i)該CDRH1包含根據以下中之任一者之胺基酸序列或由其組成:SEQ ID NO.: 400、23、33、43、53、63、75、85、97、107、120、130、140、147、160、170、174、183、190、199、209、219、229、241、255、265、275、285、299、313、323、333、370、380、390、410、420、430、435、445、455、465、475、485、495、505、515、525、535、545、555、565、575、585、595、605、615、631及693,或其包含一個、二個或三個酸取代之序列變異體,該等取代中之一或多者任擇地為守恆取代及/或為對經生殖系編碼之胺基酸之取代;
(ii)該CDRH2包含根據以下中之任一者之胺基酸序列或由其組成:SEQ ID NO.: 401、24、34、44、54、64、76、86、98、108、121、131、141、148、151、161、171、184、200、210、220、230、242、256、266、276、286、300、314、324、334、352、360、362、364、366、371、381、391、411、421、431、436、446、456、466、476、486、496、506、516、526、536、546、556、566、576、586、596、606、616、625、632、635、637、639、641、643、645、647、649、651、653、655、657、659、661、663、665、667、669、671、673、675、677、679、681、683、685及694,或其包含一個、二個或三個胺基酸取代之序列變異體,該等取代中之一或多者任擇地為守恆取代及/或為對經生殖系編碼之胺基酸之取代;
(iii)該CDRH3包含根據以下中之任一者之胺基酸序列或由其組成:SEQ ID NO.: 766、25、35、45、55、65、77、87、99、109、122、132、142、149、162、164、165、172、176、177、179、180、185、187、188、201、211、221、231、243、257、267、277、287、301、315、325、335、354、372、382、392、412、422、432、437、447、457、467、477、487、497、507、517、527、537、547、557、567、577、587、597、607、617、627、633、695、751、753、755、757、760、763、765及402,或其包含一個、二個或三個胺基酸取代之序列變異體,該等取代中之一或多者任擇地為守恆取代及/或為對經生殖系編碼之胺基酸之取代;
(iv)該CDRL1包含根據以下中之任一者之胺基酸序列或由其組成:SEQ ID NO.: 404、27、37、47、57、67、79、89、101、111、124、134、144、152、155、156、158、159、166、181、192、203、213、223、233、245、259、269、279、289、303、317、327、337、356、374、384、394、414、424、439、449、459、469、479、489、499、509、519、529、539、549、559、569、579、589、599、609、619、687及697,或其包含一個、二個或三個胺基酸取代之序列變異體,該等取代中之一或多者任擇地為守恆取代及/或為對經生殖系編碼之胺基酸之取代;
(v)該CDRL2包含根據以下中之任一者之胺基酸序列或由其組成:SEQ ID NO.: 405、28、38、48、58、68、80、90、102、112、125、135、145、153、167、182、193、204、214、224、234、246、260、270、280、290、304、318、328、338、375、385、395、415、425、440、450、460、470、480、490、500、510、520、530、540、550、560、570、580、590、600、610、620、688及698,或其包含一個、二個或三個胺基酸取代之序列變異體,該等取代中之一或多者任擇地為守恆取代及/或為對經生殖系編碼之胺基酸之取代;及/或
(vi)該CDRL3包含根據以下中之任一者之胺基酸序列或由其組成:SEQ ID NO.: 406、29、39、49、59、69、81、91、103、113、126、136、146、169、195、197、205、215、225、235、247、261、271、281、291、305、319、329、339、358、376、386、396、416、426、441、451、461、471、481、491、501、511、521、531、541、551、561、571、581、591、601、611、621、689、699、745及747,或其包含一個、二個或三個胺基酸取代之序列變異體,該等取代中之一或多者任擇地為守恆取代及/或為對經生殖系編碼之胺基酸之取代,
其中該抗體或抗原結合片段能夠結合至表現於宿主細胞之細胞表面上及/或病毒粒子上之SARS-CoV-2的表面醣蛋白。
實施例2.如實施例1之抗體或抗原結合片段,其能夠中和活體外感染模型及/或活體內動物感染模型及/或人類中之SARS-CoV-2感染。
實施例3.如實施例1至2中任一項之抗體或抗原結合片段,其包含以下之CDRH1、CDRH2、CDRH3、CDRL1、CDRL2及CDRL3胺基酸序列:(i)分別為SEQ ID NO.: 400、401、766及404-406;(ii)分別為SEQ ID NO.: 400-402及404-406;(iii)分別為SEQ ID NO.: 43-45及47-49;(iv)分別為SEQ ID NO.: 53-55及57-59;(v)分別為SEQ ID NO.: 63-65及67-69;(vi)分別為SEQ ID NO.: 75-77及79-81;(vii)分別為SEQ ID NO.: 85-87及89-91;(viii)分別為SEQ ID NO.: 97-99及101-103;(ix)分別為SEQ ID NO.: 107-109及111-113;(x)分別為SEQ ID NO.: 120-122及124-126;(xi)分別為SEQ ID NO.: 130-132及134-136;(xii)分別為SEQ ID NO.: 23或147,24、148或151中之任一者,25或149,27、152、155、156、158或159、28或153,及29中之任一者;(xiii)分別為SEQ ID NO.: 43或160,44或161,45、162、164或165中之任一者、47或166,48或167,及49或169;(xiv)分別為SEQ ID NO.: 130、170或174中之任一者,130、131、132、134或181,135或182,及136;(xv)分別為SEQ ID NO.: 53、183或190中之任一者,54或184,55、185、187或188中之任一者,57或192中之任一者,58或193,及59、195或197中之任一者;(xvi)分別為SEQ ID NO.: 199-201及203-205;(xvii)分別為SEQ ID NO.: 209-211及213-215;(xviii)分別為SEQ ID NO.: 219-221及223-225;(xix)分別為SEQ ID NO.: 229-231及233-235;(xx)分別為SEQ ID NO.: 241-243及245-247;(xxi)分別為SEQ ID NO.: 255-257及259-261;(xxii)分別為SEQ ID NO.: 265-267及269-271;(xxiii)分別為SEQ ID NO.: 275-277及279-281;(xxiv)分別為SEQ ID NO.: 285-287及289-291;(xxv)分別為SEQ ID NO.: 299-301及303-305;(xxvi)分別為SEQ ID NO.: 313-315及317-319;(xxvii)分別為SEQ ID NO.: 323-325及327-329;(xxviii)分別為SEQ ID NO.: 333-335及337-339;(xxix)分別為SEQ ID NO.: 229、230或352,231或354,及233或356,234,及235或358;(xxx)分別為SEQ ID NO.: 313,314、360、362、364或366中之任一者、315及317-319;(xxxi)分別為SEQ ID NO.: 370-372及374-376;(xxxii)分別為SEQ ID NO.: 380-382及384-386;(xxxiii)分別為SEQ ID NO.: 390-392及394-396;(xxxiv)23-25及27-29;(xxxv)分別為SEQ ID NO.: 410-412及414-416;(xxxvi)分別為SEQ ID NO.: 420-422及424-426;(xxxvii)分別為SEQ ID NO.: 435-437及439-441;(xxxviii)分別為SEQ ID NO.: 445-447及449-451;(xxxix)分別為SEQ ID NO.: 455-457及459-461;(xxxx)分別為SEQ ID NO.: 465-467及469-471;(xxxxi)分別為SEQ ID NO.: 475-477及479-481;(xxxxii)分別為SEQ ID NO.: 485-487及489-491;(xxxxiii)分別為SEQ ID NO.: 494-497及499-501;(xxxxiv)分別為SEQ ID NO.: 505-507及509-511;(xxxxv)分別為SEQ ID NO.: 515-517及519-521;(xxxxvi)分別為SEQ ID NO.: 525-527及529-531;(xxxxvii)分別為SEQ ID NO.: 535-537及539-541;(xxxxviii)分別為SEQ ID NO.: 545-547及549-551;(xxxxix)分別為SEQ ID NO.: 555-557及559-561;(xxxxx)分別為SEQ ID NO.: 565-567及569-571;(xxxxxi)分別為SEQ ID NO.: 575-577及579-581;(xxxxxii)分別為SEQ ID NO.: 585,586或625,587或627,及589-591;(xxxxxiii)分別為SEQ ID NO.: 595-597及599-601;(xxxxxiv)分別為SEQ ID NO.: 605-607及609-611;(xxxxxv)分別為SEQ ID NO.: 615-617及619-621;(xxxxxvi)分別為SEQ ID NO.: 631,632或635或637或639或641或643或645或647或649或651或653或655或657或659或661或663或665或667或669或671或673或675或677或679或681或683或685、633及697-699;(xxxxxvii)分別為SEQ ID NO.: 693-695及697-699;(xxxxxviii)分別為SEQ ID NO.: 400,401,及751、753、755、757或760中之任一者,及404,405,及745或747中之任一者;(xxxxxxix)分別為SEQ ID NO.: 585,586,及762或764,及589-591;(xxxxxxx)分別為SEQ ID NO.: 33-35及37-39;或(xxxxxxxi)分別為SEQ ID NO.: 400;401;766;404;405或包含一個、二個或三個胺基酸取代之405的變異體,其中該一個、二個或三個胺基酸取代中之每一者任擇地為守恆胺基酸取代;及406。
實施例4.一種抗體或其抗原結合片段,其包含SEQ ID NO.:399中所闡述之VH胺基酸序列之CDRH1、CDRH2及CDRH3,及SEQ ID NO.:738中所闡述之VL胺基酸序列之CDRL1、CDRL2或包含一個、二個或三個胺基酸取代之CDRL2的變異體,其中該一個、二個或三個胺基酸取代中之每一者任擇地為守恆胺基酸取代;及CDRL3,其中該等CDR係根據IMGT,
且其中該抗體或抗原結合片段能夠結合至表現於宿主細胞之細胞表面上及/或病毒粒子上之SARS-CoV-2的表面醣蛋白。
實施例5.一種抗體或其抗原結合片段,其包含重鏈可變域(VH)及輕鏈可變域(VL),該重鏈可變域(VH)包含互補決定區(CDR)H1、CDRH2及CDRH3,且該輕鏈可變域(VL)包含CDRL1、CDRL2及CDRL3,其中CDRH1、CDRH2、CDRH3、CDRL1、CDRL2及CDRL3包含以下中所闡述之胺基酸序列:(a)分別為SEQ ID NO.:400、401、766、404、405及406;(b)分別為SEQ ID NO.:400、401、769、404、405及406;(c)分別為SEQ ID NO.:400、401、770、404、405及406;(d)分別為SEQ ID NO.:400、401、771、404、405及406;(e)分別為SEQ ID NO.:400、401、772、404、405及406;(f)分別為SEQ ID NO.:400、401、773、404、405及406;(g)分別為SEQ ID NO.:400、401、766、404、405及745;(h)分別為SEQ ID NO.:400、401、769、404、405及745;(i)分別為SEQ ID NO.:400、401、770、404、405及745;(j)分別為SEQ ID NO.:400、401、771、404、405及745;(k)分別為SEQ ID NO.:400、401、772、404、405及745;(l)分別為SEQ ID NO.: 400、401、773、405、405及745;(m)分別為SEQ ID NO.:400、401、766、404、405及747;(n)分別為SEQ ID NO.:400、401、769、404、405及747;(o)分別為SEQ ID NO.:400、401、770、404、405及747;(p)分別為SEQ ID NO.:400、401、771、404、405及747;(q)分別為SEQ ID NO.:400、401、772、404、405及747;或(r)分別為SEQ ID NO.:400、401、773、404、405及747,
其中該抗體或抗原結合片段能夠結合至表現於宿主細胞之細胞表面上及/或病毒粒子上之SARS-CoV-2的表面醣蛋白。
實施例6.如實施例5之抗體或其抗原結合片段,其包含重鏈可變域(VH)及輕鏈可變域(VL),該重鏈可變域(VH)包含CDRH1、CDRH2及CDRH3,且該輕鏈可變域(VL)包含CDRL1、CDRL2及CDRL3,其中CDRH1、CDRH2、CDRH3、CDRL1、CDRL2及CDRL3包含以下中所闡述之胺基酸序列:(a)分別為SEQ ID NO.:400、401、766、404、405及406。
實施例7.如實施例4-6中任一項之抗體或抗原結合片段,其包含以下中所闡述之胺基酸序列:(a) SEQ ID NO.:400、401、402、404、405及406;(b) SEQ ID NO.:400、401、751、404、405及406;(c) SEQ ID NO.:400、401、753、404、405及406;(d) SEQ ID NO.:400、401、755、404、405及406;(e) SEQ ID NO.:400、401、757、404、405及406;(f) SEQ ID NO.:400、401、760、404、405及406;(g) SEQ ID NO.:400、401、402、404、405及745;(h) SEQ ID NO.:400、401、751、404、405及745;(i) SEQ ID NO.:400、401、753、404、405及745;(j) SEQ ID NO.:400、401、755、404、405及745;(k) SEQ ID NO.:400、401、757、404、405及745;(l) SEQ ID NO.: 400、401、760、404、405及745;(m) SEQ ID NO.:400、401、402、404、405及747;(n) SEQ ID NO.:400、401、751、404、405及747;(o) SEQ ID NO.:400、401、753、404、405及747;(p) SEQ ID NO.:400、401、755、404、405及747;(q) SEQ ID NO.:400、401、757、404、405及747;或(r) SEQ ID NO.:400、401、760、404、405及747。
實施例8.如實施例4-7中任一項之抗體或抗原結合片段,其在VH中包含SEQ ID NO.: 400中所闡述之胺基酸序列、SEQ ID NO.:401中所闡述之胺基酸序列及SEQ ID NO.:402中所闡述之胺基酸序列,及在VL中包含SEQ ID NO.:404中所闡述之胺基酸序列、SEQ ID NO.:405中所闡述之胺基酸序列及SEQ ID NO.:406中所闡述之胺基酸序列。
實施例9.一種抗體或其抗原結合片段,其包含重鏈可變域(VH)及輕鏈可變域(VL),該重鏈可變域(VH)包含互補決定區(CDR)H1、CDRH2及CDRH3,且該輕鏈可變域(VL)包含CDRL1、CDRL2及CDRL3,其中CDRH1、CDRH2、CDRH3、CDRL1、CDRL2及CDRL3包含以下中所闡述之胺基酸序列:分別為SEQ ID NO.:525、526、527、529、530及531,
且其中該抗體或抗原結合片段能夠結合至表現於宿主細胞之細胞表面上及/或病毒粒子上之SARS-CoV-2的表面醣蛋白。
實施例10.一種抗體或其抗原結合片段,其包含重鏈可變域(VH)及輕鏈可變域(VL),該重鏈可變域(VH)包含互補決定區(CDR)H1、CDRH2及CDRH3,且該輕鏈可變域(VL)包含CDRL1、CDRL2及CDRL3,其中CDRH1、CDRH2、CDRH3、CDRL1、CDRL2及CDRL3包含以下中所闡述之胺基酸序列:分別為SEQ ID NO.:585,586或625,587或627,589、590及591,
且其中該抗體或抗原結合片段能夠結合至表現於宿主細胞之細胞表面上及/或病毒粒子上之SARS-CoV-2的表面醣蛋白。Embodiment 9. A kind of antibody or its antigen-binding fragment, it comprises heavy chain variable domain (VH) and light chain variable domain (VL), this heavy chain variable domain (VH) comprises complementarity determining region (CDR) H1, CDRH2 and CDRH3, and the light chain variable domain (VL) comprises CDRL1, CDRL2 and CDRL3, wherein CDRH1, CDRH2, CDRH3, CDRL1, CDRL2 and CDRL3 comprise the amino acid sequences set forth in: SEQ ID NO. : 525, 526, 527, 529, 530 and 531,
And wherein the antibody or antigen-binding fragment is capable of binding to the surface glycoprotein of SARS-CoV-2 expressed on the cell surface of the host cell and/or on the virion.
實施例11.一種抗體或其抗原結合片段,其包含重鏈可變域(VH)及輕鏈可變域(VL),該重鏈可變域(VH)包含互補決定區(CDR)H1、CDRH2及CDRH3,且該輕鏈可變域(VL)包含CDRL1、CDRL2及CDRL3,其中CDRH1、CDRH2、CDRH3、CDRL1、CDRL2及CDRL3包含以下中所闡述之胺基酸序列:分別為SEQ ID NO.:229、230、231、233、234及235,
其中該抗體或抗原結合片段能夠結合至表現於宿主細胞之細胞表面上及/或病毒粒子上之SARS-CoV-2的表面醣蛋白。
實施例12.如實施例1-11中任一項之抗體或抗原結合片段,其中:
(i)該VH包含與根據以下中之任一者之胺基酸序列具有至少85% (例如,85%、86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99%或100%)之一致性的胺基酸序列或由其組成:SEQ ID NO.: 399、22、32、42、52、62、72、74、84、96、106、119、129、139、150、163、173、175、178、186、189、191、198、208、218、228、240、254、264、274、284、298、312、322、332、350、351、353、359、361、363、365、367、368、369、379、389、409、419、429、434、444、454、464、474、484、494、504、514、524、534、544、554、564、574、584、594、604、614、624、626、628、630、634、636、638、640、642、644、646、648、650、652、654、656、658、660、662、664、666、668、670、672、674、676、678、680、682、684、692、740、741、742、743、748、749、750、752、754、756、758、759、761、762及764,其中該變化任擇地限於一或多個骨架區及/或該變化包含對經生殖系編碼之胺基酸之一或多個取代;及/或
(ii)該VL包含與根據以下中之任一者之胺基酸序列具有至少85% (例如,85%、86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99%或100%)之一致性的胺基酸序列或由其組成:SEQ ID NO.: 738、26、36、46、56、66、78、88、94、100、110、123、133、143、154、157、168、194、196、202、212、222、232、238、244、250、252、258、268、278、288、294、296、302、308、310、316、326、336、355、357、373、383、393、403、413、423、438、448、458、468、478、488、498、508、518、528、538、548、558、568、578、588、598、608、618、686、696、744及746,其中該變化任擇地限於一或多個骨架區及/或該變化包含對經生殖系編碼之胺基酸之一或多個取代。
實施例13.如實施例1-12中任一項之抗體或抗原結合片段,其中該VH包含與SEQ ID NO.:399中所闡述之胺基酸序列具有至少85%之一致性的胺基酸序列或由其組成,且該VL包含與SEQ ID NO.:403或SEQ ID NO.:738中所闡述之胺基酸序列具有至少85%之一致性的胺基酸序列或由其組成。
實施例14.如實施例1-13中任一項之抗體或抗原結合片段,其中該VH包含與SEQ ID NO.:399中所闡述之胺基酸序列具有至少90%之一致性的胺基酸序列或由其組成,且該VL包含與SEQ ID NO.:403或SEQ ID NO.:738中所闡述之胺基酸序列具有至少90%之一致性的胺基酸序列或由其組成。
實施例15.如實施例1-14中任一項之抗體或抗原結合片段,其中該VH包含與SEQ ID NO.:399中所闡述之胺基酸序列具有至少95%之一致性的胺基酸序列或由其組成,且該VL包含與SEQ ID NO.:403或SEQ ID NO.:738中所闡述之胺基酸序列具有至少95%之一致性的胺基酸序列或由其組成。
實施例16.如實施例1-15中任一項之抗體或抗原結合片段,其中該VH包含與SEQ ID NO.:399中所闡述之胺基酸序列具有至少97%之一致性的胺基酸序列或由其組成,且該VL包含與SEQ ID NO.:403或SEQ ID NO.:738中所闡述之胺基酸序列具有至少97%之一致性的胺基酸序列或由其組成。
實施例17.如技術方案1-16中任一項之抗體或抗原結合片段,其中該VH包含與SEQ ID NO.:399中所闡述之胺基酸序列具有至少99%之一致性的胺基酸序列或由其組成,且該VL包含與SEQ ID NO.:403或SEQ ID NO.:738中所闡述之胺基酸序列具有至少99%之一致性的胺基酸序列或由其組成。Embodiment 17. The antibody or antigen-binding fragment of any one of technical solutions 1-16, wherein the VH comprises an amino group having at least 99% identity with the amino acid sequence set forth in SEQ ID NO.:399 The VL comprises or consists of an amino acid sequence that is at least 99% identical to the amino acid sequence set forth in SEQ ID NO.:403 or SEQ ID NO.:738.
實施例18.如實施例1-12中任一項之抗體或抗原結合片段,其中該VH及該VL與以下中所闡述之胺基酸序列具有至少85%之一致性(例如,85%、86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99%或100%): (i)分別為SEQ ID NO.:524及528; (ii)分別為SEQ ID NO.:584或624或626或628及588; (iii)分別為SEQ ID NO.:228或740或741或742或743及232;或 (iv)分別為SEQ ID NO.:228或740或741或742或743及238。Embodiment 18. The antibody or antigen-binding fragment of any one of embodiments 1-12, wherein the VH and the VL are at least 85% identical to the amino acid sequences set forth below (eg, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100%): (i) are SEQ ID NO.: 524 and 528, respectively; (ii) are SEQ ID NO.: 584 or 624 or 626 or 628 and 588, respectively; (iii) SEQ ID NO.: 228 or 740 or 741 or 742 or 743 and 232, respectively; or (iv) are SEQ ID NO.: 228 or 740 or 741 or 742 or 743 and 238, respectively.
實施例19.如實施例1-18中任一項之抗體或抗原結合片段,其中該VH包含表2中所闡述之任何VH胺基酸序列或由其組成,且其中該VL包含表2中所闡述之任何VL胺基酸序列或由其組成,其中任擇地,該VH及該VL包含或由根據以下之該等胺基酸序列組成:(i)分別為SEQ ID NO.: 399及403或738;(ii)分別為SEQ ID NO.: 32及36;(iii)分別為SEQ ID NO.: 42及46;(iv)分別為SEQ ID NO.: 52及56;(v)分別為SEQ ID NO.: 62及66;(vi)分別為SEQ ID NO.: 72及66;(vii)分別為SEQ ID NO.: 74及78;(viii)分別為SEQ ID NO.: 84及88;(ix)分別為SEQ ID NO.: 84及88; (x)分別為SEQ ID NO.: 96及100;(xi)分別為SEQ ID NO.: 106及110;(xii)分別為SEQ ID NO.: 119及123;或(xiii)分別為SEQ ID NO.: 129及133;(xiv)分別為SEQ ID NO.: 22或150及26、154或157;(xv)分別為SEQ ID NO.: 42或163及46或168;(xvi)分別為SEQ ID NO.: 129、173、175或178中之任一者及133;(xvii)分別為SEQ ID NO.: 52、186、189或191中之任一者及56、194或196中之任一者;(xviii)分別為SEQ ID NO.: 198及202;(xix)分別為SEQ ID NO.: 208及212;(xx)分別為SEQ ID NO.: 218及222;(xxi)分別為SEQ ID NO.: 228及232或238; (xxii)分別為SEQ ID NO.: 240,及244、250或252中之任一者;(xxiii)分別為SEQ ID NO.: 254及258;(xxiv)分別為SEQ ID NO.: 264及268;(xxv)分別為SEQ ID NO.: 274及278;或 (xxvi)分別為SEQ ID NO.: 284,及288、294或296中之任一者;(xxvii)分別為SEQ ID NO.: 298,及302、308或310中之任一者;(xxviii)分別為SEQ ID NO.: 312及316;(xxix)分別為SEQ ID NO.: 322及326;(xxx)分別為SEQ ID NO.: 332及336;(xxxi)分別為SEQ ID NO.: 228、350、351或353及232、238、355或357中之任一者;(xxxii)分別為SEQ ID NO.: 312、359、361、363、365、367或368中之任一者及316;(xxxiii)分別為SEQ ID NO.: 369及373;(xxxiv)分別為SEQ ID NO.: 379及383;(xxxv)分別為SEQ ID NO.: 389及393;(xxxvi)分別為SEQ ID NO.: 22及26;(xxxvii)分別為SEQ ID NO.: 409及413;(xxxviii)分別為SEQ ID NO.: 419及423;(xxxix)分別為SEQ ID NO.: 434及438;(xxxx)分別為SEQ ID NO.: 444及448;(xxxxi)分別為SEQ ID NO.: 454及458;(xxxxii)分別為SEQ ID NO.: 464及468;(xxxxiii)分別為SEQ ID NO.: 474及478;(xxxxiv)分別為SEQ ID NO.: 484及488;(xxxxv)分別為SEQ ID NO.: 494及498;(xxxxvi)分別為SEQ ID NO.: 504及508;(xxxxvii)分別為SEQ ID NO.: 514及518;(xxxxviii)分別為SEQ ID NO.: 524及528;(xxxxix)分別為SEQ ID NO.: 534及538;(xxxxx)分別為SEQ ID NO.: 544及548;(xxxxxi)分別為SEQ ID NO.: 554及558;(xxxxxii)分別為SEQ ID NO.: 564及568;(xxxxxiii)分別為SEQ ID NO.: 574及578;(xxxxxiv)分別為SEQ ID NO.: 584及588;(xxxxxv)分別為SEQ ID NO.: 594及598; (xxxxxvi)分別為SEQ ID NO.: 604及608;(xxxxxvii)分別為SEQ ID NO.: 614及618;(xxxxxviii)分別為SEQ ID NO.: 624、626或628及588;(xxxxxix)分別為SEQ ID NO.: 630、634、636、638、640、642、644、646、648、650、652、654、656、658、660、662、664、666、668、670、672、674、676、678、680、682或684及686;(xxxxxx)分別為SEQ ID NO.: 692及696;(xxxxxxi)分別為SEQ ID NO.: 740-743中之任一者及238;(xxxxxxii)分別為SEQ ID NO.: 399、748、749、750、752、754、756、758、759及761中之任一者及403、744及746中之任一者;或(xxxxxxiii)分別為SEQ ID NO.: 762或764及588。Embodiment 19. as the antibody or antigen-binding fragment of any one of embodiment 1-18, wherein this VH comprises or consists of any VH amino acid sequence set forth in table 2, and wherein this VL comprises in table 2 Any VL amino acid sequence set forth or consists of, wherein optionally, the VH and the VL comprise or consist of the amino acid sequences according to: (i) SEQ ID NO.: 399 and 403 or 738; (ii) respectively SEQ ID NO.: 32 and 36; (iii) respectively SEQ ID NO.: 42 and 46; (iv) respectively SEQ ID NO.: 52 and 56; (v) respectively are SEQ ID NO.: 62 and 66; (vi) are respectively SEQ ID NO.: 72 and 66; (vii) are respectively SEQ ID NO.: 74 and 78; (viii) are respectively SEQ ID NO.: 84 and 88; (ix) are SEQ ID NO.: 84 and 88, respectively; (x) respectively SEQ ID NO.: 96 and 100; (xi) respectively SEQ ID NO.: 106 and 110; (xii) respectively SEQ ID NO.: 119 and 123; or (xiii) respectively SEQ ID NO.: 129 and 133; (xiv) are respectively SEQ ID NO.: 22 or 150 and 26, 154 or 157; (xv) are respectively SEQ ID NO.: 42 or 163 and 46 or 168; (xvi) are respectively Any one of SEQ ID NO.: 129, 173, 175 or 178 and 133; (xvii) is any one of SEQ ID NO.: 52, 186, 189 or 191 and any one of 56, 194 or 196, respectively Any one; (xviii) are respectively SEQ ID NO.: 198 and 202; (xix) are respectively SEQ ID NO.: 208 and 212; (xx) are respectively SEQ ID NO.: 218 and 222; (xxi) are respectively are SEQ ID NO.: 228 and 232 or 238; (xxii) are SEQ ID NO.: 240, and any one of 244, 250 or 252, respectively; (xxiii) are SEQ ID NO.: 254 and 258, respectively; (xxiv) are SEQ ID NO.: 264 and 258, respectively 268; (xxv) are SEQ ID NO.: 274 and 278, respectively; or (xxvi) is SEQ ID NO.: 284, and any one of 288, 294, or 296, respectively; (xxvii) is SEQ ID NO.: 298, and any one of 302, 308, or 310, respectively; (xxviii) ) are respectively SEQ ID NO.: 312 and 316; (xxix) are respectively SEQ ID NO.: 322 and 326; (xxx) are respectively SEQ ID NO.: 332 and 336; (xxxi) are respectively SEQ ID NO.: 228, 350, 351 or 353 and any one of 232, 238, 355 or 357; (xxxii) respectively SEQ ID NO.: any one of 312, 359, 361, 363, 365, 367 or 368 and 316; (xxxiii) are respectively SEQ ID NO.: 369 and 373; (xxxiv) are respectively SEQ ID NO.: 379 and 383; (xxxv) are respectively SEQ ID NO.: 389 and 393; (xxxvi) are respectively SEQ ID NO.: 389 and 393 ID NO.: 22 and 26; (xxxvii) are respectively SEQ ID NO.: 409 and 413; (xxxviii) are respectively SEQ ID NO.: 419 and 423; (xxxix) are respectively SEQ ID NO.: 434 and 438; (xxxx) are respectively SEQ ID NO.: 444 and 448; (xxxxi) are respectively SEQ ID NO.: 454 and 458; (xxxxii) are respectively SEQ ID NO.: 464 and 468; (xxxxiii) are respectively SEQ ID NO. .: 474 and 478; (xxxxiv) are respectively SEQ ID NO.: 484 and 488; (xxxxv) are respectively SEQ ID NO.: 494 and 498; (xxxxvi) are respectively SEQ ID NO.: 504 and 508; (xxxxvii ) are respectively SEQ ID NO.: 514 and 518; (xxxxviii) are respectively SEQ ID NO.: 524 and 528; (xxxix) are respectively SEQ ID NO.: 534 and 538; (xxxxx) are respectively SEQ ID NO.: 544 and 548; (xxxxxxi) are respectively SEQ ID NO.: 554 and 558; (xxxxxii) are respectively SEQ ID NO.: 564 and 568; (xxxxxiii) are respectively SEQ ID NO.: 574 and 578; (xxxxxiv) are respectively are SEQ ID NO.: 584 and 588; (xxxxxv) are SEQ ID NO.: 594 and 59, respectively 8; (xxxxxvi) are respectively SEQ ID NO.: 604 and 608; (xxxxxvii) are respectively SEQ ID NO.: 614 and 618; (xxxxxviii) are respectively SEQ ID NO.: 624, 626 or 628 and 588; (xxxxxix) are respectively is SEQ ID NO.: 630, 634, 636, 638, 640, 642, 644, 646, 648, 650, 652, 654, 656, 658, 660, 662, 664, 666, 668, 670, 672, 674, 676, 678, 680, 682 or 684 and 686; (xxxxxx) are SEQ ID NO.: 692 and 696, respectively; (xxxxxxi) are any of SEQ ID NO.: 740-743 and 238, respectively; (xxxxxxii) are respectively SEQ ID NO.: any one of 399, 748, 749, 750, 752, 754, 756, 758, 759 and 761 and any one of 403, 744 and 746; or (xxxxxxiii) are respectively SEQ ID NO. ID NO.: 762 or 764 and 588.
實施例20.一種抗體或其抗原結合片段,其包含重鏈可變域(VH)及輕鏈可變域(VL),其中該VH包含SEQ ID NO: 399中所闡述之胺基酸序列或由其組成,且該VL包含SEQ ID NO: 738中所闡述之胺基酸序列或由其組成,
其中該抗體或抗原結合片段能夠結合至表現於宿主細胞之細胞表面上及/或病毒粒子上之SARS-CoV-2的表面醣蛋白。
實施例21.一種抗體或其抗原結合片段,其包含重鏈可變域(VH)及輕鏈可變域(VL),其中該VH包含SEQ ID NO: 399中所闡述之胺基酸序列或由其組成,且該VL包含SEQ ID NO: 403中所闡述之胺基酸序列或由其組成, 其中該抗體或抗原結合片段能夠結合至表現於宿主細胞之細胞表面上及/或病毒粒子上之SARS-CoV-2的表面醣蛋白。Embodiment 21. An antibody or antigen-binding fragment thereof comprising a heavy chain variable domain (VH) and a light chain variable domain (VL), wherein the VH comprises the amino acid sequence set forth in SEQ ID NO: 399 or consists of, and the VL comprises or consists of the amino acid sequence set forth in SEQ ID NO: 403, wherein the antibody or antigen-binding fragment is capable of binding to the surface glycoprotein of SARS-CoV-2 expressed on the cell surface of the host cell and/or on the virion.
實施例22.一種抗體或其抗原結合片段,其包含重鏈可變域(VH)及輕鏈可變域(VL),其中該VH包含SEQ ID NO:399、748、749、750、752、754、756、758、759及761中之任一者中所闡述之胺基酸序列或由其組成,且該VL包含SEQ ID NO: 403中所闡述之胺基酸序列或由其組成, 其中該抗體或抗原結合片段能夠結合至表現於宿主細胞之細胞表面上及/或病毒粒子上之SARS-CoV-2的表面醣蛋白。Embodiment 22. An antibody or antigen-binding fragment thereof comprising a heavy chain variable domain (VH) and a light chain variable domain (VL), wherein the VH comprises SEQ ID NOs: 399, 748, 749, 750, 752, the amino acid sequence set forth in or consisting of any one of 754, 756, 758, 759 and 761, and the VL comprises or consists of the amino acid sequence set forth in SEQ ID NO: 403, wherein the antibody or antigen-binding fragment is capable of binding to the surface glycoprotein of SARS-CoV-2 expressed on the cell surface of the host cell and/or on the virion.
實施例23.一種抗體或其抗原結合片段,其包含重鏈可變域(VH)及輕鏈可變域(VL),其中該VH包含SEQ ID NO:399、748、749、750、752、754、756、758、759及761中之任一者中所闡述之胺基酸序列或由其組成,且該VL包含SEQ ID NO: 738中所闡述之胺基酸序列或由其組成,
其中該抗體或抗原結合片段能夠結合至表現於宿主細胞之細胞表面上及/或病毒粒子上之SARS-CoV-2的表面醣蛋白。
實施例24.一種抗體或其抗原結合片段,其包含重鏈可變域(VH)及輕鏈可變域(VL),其中該VH包含SEQ ID NO:399、748、749、750、752、754、756、758、759及761中之任一者中所闡述之胺基酸序列或由其組成,且該VL包含SEQ ID NO: 744中所闡述之胺基酸序列或由其組成,
其中該抗體或抗原結合片段能夠結合至表現於宿主細胞之細胞表面上及/或病毒粒子上之SARS-CoV-2的表面醣蛋白。
實施例25.一種抗體或其抗原結合片段,其包含重鏈可變域(VH)及輕鏈可變域(VL),其中該VH包含SEQ ID NO:399、748、749、750、752、754、756、758、759及761中之任一者中所闡述之胺基酸序列或由其組成,且該VL包含SEQ ID NO: 746中所闡述之胺基酸序列或由其組成,
其中該抗體或抗原結合片段能夠結合至表現於宿主細胞之細胞表面上及/或病毒粒子上之SARS-CoV-2的表面醣蛋白。
實施例26.一種抗體或其抗原結合片段,其包含重鏈可變域(VH)及輕鏈可變域(VL),其中該VH包含SEQ ID NO: 524中所闡述之胺基酸序列或由其組成,且該VL包含SEQ ID NO: 528中所闡述之胺基酸序列或由其組成,
其中該抗體或抗原結合片段能夠結合至表現於宿主細胞之細胞表面上及/或病毒粒子上之SARS-CoV-2的表面醣蛋白。
實施例27.一種抗體或其抗原結合片段,其包含重鏈可變域(VH)及輕鏈可變域(VL),其中該VH包含SEQ ID NO.:584、624、626及628中之任一者中所闡述之胺基酸序列或由其組成,且該VL包含SEQ ID NO: 588中所闡述之胺基酸序列或由其組成, 其中該抗體或抗原結合片段能夠結合至表現於宿主細胞之細胞表面上及/或病毒粒子上之SARS-CoV-2的表面醣蛋白。Embodiment 27. An antibody or antigen-binding fragment thereof comprising a heavy chain variable domain (VH) and a light chain variable domain (VL), wherein the VH comprises one of SEQ ID NO.:584, 624, 626 and 628 the amino acid sequence set forth in any one of or consists of, and the VL comprises or consists of the amino acid sequence set forth in SEQ ID NO: 588, wherein the antibody or antigen-binding fragment is capable of binding to the surface glycoprotein of SARS-CoV-2 expressed on the cell surface of the host cell and/or on the virion.
實施例28.一種抗體或其抗原結合片段,其包含重鏈可變域(VH)及輕鏈可變域(VL),其中該VH包含SEQ ID NO.:228、740、741、742及743中之任一者中所闡述之胺基酸序列或由其組成,且該VL包含SEQ ID NO: 232中所闡述之胺基酸序列或由其組成, 其中該抗體或抗原結合片段能夠結合至表現於宿主細胞之細胞表面上及/或病毒粒子上之SARS-CoV-2的表面醣蛋白。Embodiment 28. An antibody or antigen-binding fragment thereof comprising a heavy chain variable domain (VH) and a light chain variable domain (VL), wherein the VH comprises SEQ ID NO.: 228, 740, 741, 742 and 743 the amino acid sequence set forth in any one of or consists of, and the VL comprises or consists of the amino acid sequence set forth in SEQ ID NO: 232, wherein the antibody or antigen-binding fragment is capable of binding to the surface glycoprotein of SARS-CoV-2 expressed on the cell surface of the host cell and/or on the virion.
實施例29.一種抗體或其抗原結合片段,其包含重鏈可變域(VH)及輕鏈可變域(VL),其中該VH包含SEQ ID NO.:228、740、741、742及743中之任一者中所闡述之胺基酸序列或由其組成,且該VL包含SEQ ID NO: 238中所闡述之胺基酸序列或由其組成,
其中該抗體或抗原結合片段能夠結合至表現於宿主細胞之細胞表面上及/或病毒粒子上之SARS-CoV-2的表面醣蛋白。
實施例30.一種抗體或其抗原結合片段,其包含重鏈可變域(VH)及輕鏈可變域(VL),其中該VH包含SEQ ID NO: 32中所闡述之胺基酸序列或由其組成,且該VL包含SEQ ID NO: 36中所闡述之胺基酸序列或由其組成。
實施例31.一種抗體或其抗原結合片段,其包含重鏈可變域(VH)及輕鏈可變域(VL),該重鏈可變域(VH)包含CDRH1、CDRH2及CDRH3,且該輕鏈可變域(VL)包含CDRL1、CDRL2及CDRL3,其中該CDRH1、CDRH2及CDRH3分別包含SEQ ID NO: 33-35中所闡述之胺基酸序列或由其組成,且該CDRL1、CDRL2及CDRL3分別包含SEQ ID NO: 37-39中所闡述之胺基酸序列或由其組成。Embodiment 31. An antibody or antigen-binding fragment thereof comprising a heavy chain variable domain (VH) and a light chain variable domain (VL), the heavy chain variable domain (VH) comprising CDRH1, CDRH2 and CDRH3, and the The light chain variable domain (VL) comprises CDRL1, CDRL2 and CDRL3, wherein the CDRH1, CDRH2 and CDRH3 comprise or consist of the amino acid sequences set forth in SEQ ID NOs: 33-35, respectively, and the CDRL1, CDRL2 and CDRL3 comprises or consists of the amino acid sequences set forth in SEQ ID NOs: 37-39, respectively.
實施例32.如實施例3-31中任一項之抗體或抗原結合片段,其能夠中和活體外感染模型及/或活體內動物感染模型及/或人類中之SARS-CoV-2感染。
實施例33.如實施例1-32中任一項之抗體或抗原結合片段,其: (i)識別SARS-CoV-2之ACE2受體結合模體(RBM,SEQ ID NO.:5)中之表位; (ii)能夠阻斷SARS-CoV-2 (例如,SARS-CoV-2 RBM)與人類ACE2之間的相互作用; (iii)能夠與SARS-CoV-2 S蛋白結合; (iv)識別在SARS-CoV-2之該ACE2 RBM中及在SARS-CoV-1之ACE2 RBM中守恆的表位; (v)針對SARS-CoV-2及SARS-CoV-1冠狀病毒交叉反應; (vii)識別在該SARS-CoV-2表面醣蛋白中存在且在該ACE2 RBM中不存在的表位; (viii)能夠與呈融合前構形之SARS-CoV-2 S蛋白三聚體結合; 或 (ix) (i)-(viii)之任何組合。Embodiment 33. The antibody or antigen-binding fragment of any one of embodiments 1-32, which: (i) Recognize epitopes in the ACE2 receptor binding motif (RBM, SEQ ID NO.: 5) of SARS-CoV-2; (ii) capable of blocking the interaction between SARS-CoV-2 (eg, SARS-CoV-2 RBM) and human ACE2; (iii) capable of binding to the SARS-CoV-2 S protein; (iv) identify epitopes conserved in the ACE2 RBM of SARS-CoV-2 and in the ACE2 RBM of SARS-CoV-1; (v) cross-reacts against SARS-CoV-2 and SARS-CoV-1 coronaviruses; (vii) recognizing an epitope present in the SARS-CoV-2 surface glycoprotein and not present in the ACE2 RBM; (viii) capable of binding to the SARS-CoV-2 S protein trimer in the prefusion conformation; or (ix) any combination of (i)-(viii).
實施例34.如實施例1-33中任一項之抗體或抗原結合片段,其為IgG、IgA、IgM、IgE或IgD同型。
實施例35.如實施例1-34中任一項之抗體或抗原結合片段,其為選自IgG1、IgG2、IgG3及IgG4之IgG同型。
實施例36.如實施例1-35中任一項之抗體或抗原結合片段,其為人類、人源化或嵌合的。Embodiment 36. The antibody or antigen-binding fragment of any of embodiments 1-35, which is human, humanized, or chimeric.
實施例37.如實施例1-36中任一項之抗體或抗原結合片段,其中該抗體或抗原結合片段包含人類抗體、單株抗體、純化抗體、單鏈抗體、Fab、Fab'、F(ab')2、Fv、scFv或scFab。Embodiment 37. The antibody or antigen-binding fragment of any one of embodiments 1-36, wherein the antibody or antigen-binding fragment comprises a human antibody, monoclonal antibody, purified antibody, single chain antibody, Fab, Fab', F( ab')2, Fv, scFv or scFab.
實施例38.如實施例37之抗體或抗原結合片段,其中該scFv包含超過一個VH域及超過一個VL域。Embodiment 38. The antibody or antigen-binding fragment of embodiment 37, wherein the scFv comprises more than one VH domain and more than one VL domain.
實施例39.如實施例1-38中任一項之抗體或抗原結合片段,其中該抗體或抗原結合片段為多特異性抗體或抗原結合片段。Embodiment 39. The antibody or antigen-binding fragment of any one of embodiments 1-38, wherein the antibody or antigen-binding fragment is a multispecific antibody or antigen-binding fragment.
實施例40.如實施例39之抗體或抗原結合片段,其中該抗體或抗原結合片段為雙特異性抗體或抗原結合片段。
實施例41.如實施例39或40之抗體或抗原結合片段,其包含: (i)第一VH及第一VL;及 (ii)第二VH及第二VL, 其中該第一VH及該第二VH不同且各自獨立地包含與以下中之任一者中所闡述之胺基酸序列具有至少85% (例如,85%、86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99%或100%)之一致性的胺基酸序列:SEQ ID NO.: 22、32、42、52、62、72、74、84、96、106、119、129、139、150、163、173、175、178、186、189、191、198、208、218、228、240、254、264、274、284、298、312、322、332、350、351、353、359、361、363、365、367、368、369、379、389、399、409、419、429、434、444、454、464、474、484、494、504、514、524、534、544、554、564、574、584、594、604、614、624、626、628、630、634、636、638、640、642、644、646、648、650、652、654、656、658、660、662、664、666、668、670、672、674、676、678、680、682、684、692、740、741、742、743、748、749、750、752、754、756、758、759、761、762及764,及 其中該第一VL及該第二VL不同且各自獨立地包含與以下中之任一者中所闡述之胺基酸序列具有至少85% (例如,85%、86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99%或100%)之一致性的胺基酸序列:SEQ ID NO.: 26、36、46、56、66、78、88、94、100、110、123、133、143、154、157、168、194、196、202、212、222、232、238、244、250、252、258、268、278、288、294、296、302、308、310、316、326、336、355、357、373、383、393、403、413、423、438、448、458、468、478、488、498、508、518、528、538、548、558、568、578、588、598、608、618、686、696 738、744及746; 且其中該第一VH及該第一VL共同形成一第一抗原結合位點,且其中該第二VH及該第二VL共同形成一第二抗原結合位點。Embodiment 41. The antibody or antigen-binding fragment of embodiment 39 or 40, comprising: (i) the first VH and the first VL; and (ii) a second VH and a second VL, wherein the first VH and the second VH are different and each independently comprise at least 85% (e.g., 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100%) identical amino acid sequence: SEQ ID NO.: 22, 32, 42, 52, 62, 72, 74, 84, 96, 106, 119, 129, 139, 150, 163, 173, 175, 178, 186, 189, 191, 198, 208, 218, 228, 240, 254, 264, 274, 284, 298, 312, 322, 332, 350, 351, 353, 359, 361, 363, 365, 367, 368, 369, 379, 389, 399, 409, 419, 429, 434, 444, 454, 464, 474, 484, 494, 504, 514, 524, 534, 544, 554, 564, 574, 584, 594, 604, 614, 624, 626, 628, 630, 634, 636, 638, 640, 642, 644, 646, 648, 650, 652, 654, 656, 658, 660, 662, 664, 666, 668, 670, 672, 674, 676, 678, 680, 682, 684, 692, 740, 741, 742, 743, 748, 749, 750, 752, 754, 756, 758, 759, 761, 762, and 764, and wherein the first VL and the second VL are different and each independently comprise at least 85% (e.g., 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100%) identical amino acid sequence: SEQ ID NO.: 26, 36, 46, 56, 66, 78, 88, 94, 100, 110, 123, 133, 143, 154, 157, 168, 194, 196, 202, 212, 222, 232, 238, 244, 250, 252, 258, 268, 278, 288, 294, 296, 302, 308, 310, 316, 326, 336, 355, 357, 373, 383, 393, 403, 413, 423, 438, 448, 458, 468, 478, 488, 498, 508, 518, 528, 538, 548, 558, 568, 578, 588, 598, 608, 618, 686, 696 738, 744 and 746; And wherein the first VH and the first VL together form a first antigen binding site, and wherein the second VH and the second VL together form a second antigen binding site.
實施例42.如實施例40或41之抗體或抗原結合片段,其包含:
(i)第一VH及第一VL;及
(ii)第二VH及第二VL,
其中該第一VH包含與SEQ ID NO.: 139及342中之任一者中所闡述之胺基酸序列具有至少85% (例如,85%、86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99%或100%)之一致性的胺基酸序列,且該第一VL包含與SEQ ID NO.:143及346中之任一者中所闡述之胺基酸序列具有至少85% (亦即,85%、86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99%或100%)之一致性的胺基酸序列,且其中該第二VH包含與SEQ ID NO.: 399、748、749、750、752、754、756、758、759及761中之任一者中所闡述之胺基酸序列具有至少85% (例如,85%、86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99%或100%)之一致性的胺基酸序列,且該第二VL包含與SEQ ID NO.:403、744及746中之任一者中所闡述之胺基酸序列具有至少85% (亦即,85%、86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99%或100%)之一致性的胺基酸序列。
實施例43.如實施例39或40之抗體或抗原結合片段,其包含具有第一特異性之第一抗原結合部分及具有第二特異性之第二抗原結合部分,其中該第一抗原結合部分包含VH及VL,該VH包含SEQ ID NO:399中所闡述之胺基酸序列或由其組成,且該VL包含SEQ ID NO.:738或SEQ ID NO.:403中所闡述之胺基酸序列或由其組成。Embodiment 43. The antibody or antigen-binding fragment of
實施例44.如實施例43之抗體或抗原結合片段,其中該第二抗原結合部分包含VH及VL,該VH包含SEQ ID NO:139中所闡述之胺基酸序列或由其組成,且該VL包含SEQ ID NO.:143中所闡述之胺基酸序列或由其組成。Embodiment 44. The antibody or antigen-binding fragment of embodiment 43, wherein the second antigen-binding portion comprises VH and VL, the VH comprises or consists of the amino acid sequence set forth in SEQ ID NO: 139, and the VL comprises or consists of the amino acid sequence set forth in SEQ ID NO.:143.
實施例45.如實施例43之抗體或抗原結合片段,其中該第二抗原結合部分包含VH及VL,該VH包含SEQ ID NO:342中所闡述之胺基酸序列或由其組成,且該VL包含SEQ ID NO.:346中所闡述之胺基酸序列或由其組成。
實施例46.如實施例1-45中任一項之抗體或抗原結合片段,其中該抗體或抗原結合片段進一步包含Fc多肽或其片段。Embodiment 46. The antibody or antigen-binding fragment of any one of embodiments 1-45, wherein the antibody or antigen-binding fragment further comprises an Fc polypeptide or fragment thereof.
實施例47.如實施例46之抗體或抗原結合片段,其中該Fc多肽或其片段包含: (i)突變,與不包含該突變之參考Fc多肽相比,其增強與FcRn之結合;及/或 (ii)突變,與不包含該突變之參考Fc多肽相比,其增強與FcγR之結合。Embodiment 47. The antibody or antigen-binding fragment of embodiment 46, wherein the Fc polypeptide or fragment thereof comprises: (i) a mutation that enhances binding to FcRn compared to a reference Fc polypeptide that does not contain the mutation; and/or (ii) a mutation that enhances binding to FcyR compared to a reference Fc polypeptide that does not contain the mutation.
實施例48.如實施例47之抗體或抗原結合片段,其中增強與FcRn之結合之該突變包含:M428L;N434S;N434H;N434A;N434S;M252Y;S254T;T256E;T250Q;P257I;Q311I;D376V;T307A;E380A;或其任何組合。
實施例49.如實施例47或48之抗體或抗原結合片段,其中增強與FcRn之結合之該突變包含:(i) M428L/N434S;(ii) M252Y/S254T/T256E;(iii) T250Q/M428L;(iv) 257I/Q311I;(v) P257I/N434H;(vi) D376V/N434H;(vii) T307A/E380A/N434A;或(viii) (i)-(vii)之任何組合。Embodiment 49. The antibody or antigen-binding fragment of
實施例50.如實施例47-49中任一項之抗體或抗原結合片段,其中增強與FcRn之結合之該突變包含M428L/N434S。
實施例51.如實施例47-50中任一項之抗體或抗原結合片段,其中增強與FcγR之結合之該突變包含S239D;I332E;A330L;G236A;或其任何組合。
實施例52.如實施例47-51中任一項之抗體或抗原結合片段,其中增強與FcγR之結合之該突變包含:(i) S239D/I332E;(ii) S239D/A330L/I332E;(iii) G236A/S239D/I332E;或(iv) G236A/A330L/I332E。Embodiment 52. The antibody or antigen-binding fragment of any one of embodiments 47-51, wherein the mutation that enhances binding to FcγR comprises: (i) S239D/I332E; (ii) S239D/A330L/I332E; (iii) ) G236A/S239D/I332E; or (iv) G236A/A330L/I332E.
實施例53.如實施例47-52中任一項之抗體或抗原結合片段,其中該Fc多肽包含L234A突變及L235A突變。Embodiment 53. The antibody or antigen-binding fragment of any one of embodiments 47-52, wherein the Fc polypeptide comprises the L234A mutation and the L235A mutation.
實施例54.如實施例1-53中任一項之抗體或抗原結合片段,其包含改變醣基化之突變,其中改變醣基化之該突變包含N297A、N297Q或N297G,及/或該抗體或抗原結合片段經去醣基化及/或去岩藻醣基化。Embodiment 54. The antibody or antigen-binding fragment of any one of embodiments 1-53, comprising a mutation that alters glycosylation, wherein the mutation that alters glycosylation comprises N297A, N297Q or N297G, and/or the antibody Or the antigen-binding fragment is deglycosylated and/or defucosylated.
實施例55.如實施例1-54中任一項之抗體或抗原結合片段,其能夠以以下之EC50結合至SARS-CoV-2表面醣蛋白:低於500 ng/ml、低於250 ng/ml、低於100 ng/ml、低於90 ng/ml、低於80 ng/ml、低於70 ng/ml、低於60 ng/ml、低於50 ng/ml、低於40 ng/ml、低於30 ng/ml、低於25 ng/ml、低於20 ng/ml、低於16 ng/ml、低於15 ng/ml、低於14 ng/ml、低於13 ng/ml、低於12 ng/ml、低於10 ng/ml、低於9 ng/ml、低於8 ng/ml、低於7 ng/ml、低於6 ng/ml、低於5 ng/ml、低於4 ng/ml或低於2 mg/ml,如藉由ELISA (任擇地,間接ELISA及/或夾心ELISA)及/或藉由流式細胞測量術所量測,其中該SARS CoV-2表面醣蛋白表現於宿主細胞之細胞表面上。Embodiment 55. The antibody or antigen-binding fragment of any one of embodiments 1-54, which is capable of binding to SARS-CoV-2 surface glycoprotein with the following EC50: less than 500 ng/ml, less than 250 ng/ml ml, below 100 ng/ml, below 90 ng/ml, below 80 ng/ml, below 70 ng/ml, below 60 ng/ml, below 50 ng/ml, below 40 ng/ml , below 30 ng/ml, below 25 ng/ml, below 20 ng/ml, below 16 ng/ml, below 15 ng/ml, below 14 ng/ml, below 13 ng/ml, Below 12 ng/ml, Below 10 ng/ml, Below 9 ng/ml, Below 8 ng/ml, Below 7 ng/ml, Below 6 ng/ml, Below 5 ng/ml, Low At 4 ng/ml or less than 2 mg/ml, as measured by ELISA (optionally, indirect ELISA and/or sandwich ELISA) and/or by flow cytometry, wherein the SARS CoV-2 Surface glycoproteins are expressed on the cell surface of host cells.
實施例56.如實施例1-55中任一項之抗體或抗原結合片段,其能夠以以下之EC50結合至SARS-CoV-2表面醣蛋白RBD:低於500 ng/ml、低於250 ng/ml、低於100 ng/ml、低於90 ng/ml、低於80 ng/ml、低於70 ng/ml、低於60 ng/ml、低於50 ng/ml、低於40 ng/ml、低於30 ng/ml、低於25 ng/ml、低於20 ng/ml、低於16 ng/ml、低於15 ng/ml、低於14 ng/ml、低於13 ng/ml、低於12 ng/ml、低於10 ng/ml、低於9 ng/ml、低於8 ng/ml、低於7 ng/ml、低於6 ng/ml、低於5 ng/ml、低於4 ng/ml或低於2 mg/ml,如藉由ELISA (任擇地,間接ELISA及/或夾心ELISA)及/或藉由流式細胞測量術所量測,其中該SARS CoV-2表面醣蛋白表現於宿主細胞之細胞表面上。Embodiment 56. The antibody or antigen-binding fragment of any one of embodiments 1-55, which is capable of binding to the SARS-CoV-2 surface glycoprotein RBD with the following EC50: less than 500 ng/ml, less than 250 ng /ml, below 100 ng/ml, below 90 ng/ml, below 80 ng/ml, below 70 ng/ml, below 60 ng/ml, below 50 ng/ml, below 40 ng/ml ml, less than 30 ng/ml, less than 25 ng/ml, less than 20 ng/ml, less than 16 ng/ml, less than 15 ng/ml, less than 14 ng/ml, less than 13 ng/ml , below 12 ng/ml, below 10 ng/ml, below 9 ng/ml, below 8 ng/ml, below 7 ng/ml, below 6 ng/ml, below 5 ng/ml, Below 4 ng/ml or below 2 mg/ml, as measured by ELISA (optionally, indirect ELISA and/or sandwich ELISA) and/or by flow cytometry, wherein the SARS CoV- 2 Surface glycoproteins are expressed on the cell surface of host cells.
實施例57.如實施例1-56中任一項之抗體或抗原結合片段,其能夠以以下之KD結合至SARS-CoV-2 RBD:低於5×10-8 M、低於4×10-8 M、低於3×10-8 M、低於2×10-8 M、低於1×10-8 M、低於5×10-9 M、低於1×10-9 M、低於5×10-10 M、低於1×10-10 M、低於5×10-11 M、低於1×10-11 M、低於5×10-12 M或低於1×10-12 M,如使用生物層干涉法(BLI),任擇地使用Octet儀器所測定,在該儀器中抗體或抗原結合片段任擇地在2.7 µg/ml下負載於蛋白質A針上,且SARS-CoV-2 RBD在6 µg/ml、1.5 µg/ml或0.4 µg/ml下負載5分鐘,進一步任擇地量測解離持續7分鐘。Embodiment 57. The antibody or antigen-binding fragment of any one of embodiments 1-56, which is capable of binding to SARS-CoV-2 RBD with a KD of: below 5×10 −8 M, below 4×10 -8 M, below 3×10 -8 M, below 2×10 -8 M, below 1×10 -8 M, below 5×10 -9 M, below 1×10 -9 M, low Below 5×10 -10 M, below 1×10 -10 M, below 5×10 -11 M, below 1×10 -11 M, below 5×10 -12 M or below 1×10 - 12 M, as determined using Biolayer Interferometry (BLI), optionally using an Octet instrument in which the antibody or antigen-binding fragment is optionally loaded on a protein A needle at 2.7 µg/ml, and SARS- CoV-2 RBD was loaded at 6 µg/ml, 1.5 µg/ml or 0.4 µg/ml for 5 minutes, and further dissociation was optionally measured for 7 minutes.
實施例58.如實施例1-57中任一項之抗體或抗原結合片段,其能夠以以下之KD結合至SARS-CoV-2 RBD:低於6×10-8 M、低於5×10-8 M、低於4×10-8 M、低於3×10-8 M、低於2×10-8 M、低於1×10-8 M、低於5×10-9 M、低於4×10-9 M、低於3×10-9 M、低於2×10-9 M、低於1×10-9 M或低於8×10-10 M,如使用表面電漿子共振(SPR),任擇地使用Biacore T200儀器使用單一循環動力學方法所測定。Embodiment 58. The antibody or antigen-binding fragment of any one of embodiments 1-57, which is capable of binding to SARS-CoV-2 RBD with the following KD: below 6×10 −8 M, below 5×10 -8 M, below 4×10 -8 M, below 3×10 -8 M, below 2×10 -8 M, below 1×10 -8 M, below 5×10 -9 M, low below 4×10 -9 M, below 3×10 -9 M, below 2×10 -9 M, below 1×10 -9 M or below 8×10 -10 M, eg using surface plasmons Resonance (SPR), optionally determined using a single cycle kinetic method using a Biacore T200 instrument.
實施例59.如技術方案1-58中任一項之抗體或抗原結合片段,其能夠結合至SARS-CoV-2 RBD,且抑制(i)該RBD與(ii)人類ACE2及/或人類SIGLEC-1之間的相互作用。Embodiment 59. The antibody or antigen-binding fragment of any one of technical solutions 1-58, which can bind to SARS-CoV-2 RBD, and inhibit (i) this RBD and (ii) human ACE2 and/or human SIGLEC -1 interactions.
實施例60.如實施例1-59中任一項之抗體或抗原結合片段,其能夠中和:
(i)藉由SARS-CoV-2假病毒引起之感染,任擇地:
(i)(a)其中中和IC50為低於100 ng/ml、低於90 ng/ml、低於80 ng/ml、低於70 ng/ml、低於60 ng/ml、低於50 ng/ml、低於40 ng/ml、低於30 ng/ml、低於25 ng/ml、低於20 ng/ml、低於15 ng/ml、低於10 ng/ml、低於9 ng/ml、低於8 ng/ml、低於7 ng/ml、低於6 ng/ml、低於5 ng/ml、低於4 ng/ml、低於3 ng/ml、低於2 ng/ml或低於1 ng/ml,較佳低於10 ng/ml、低於9 ng/ml、低於8 ng/ml、低於7 ng/ml、低於6 ng/ml、低於5 ng/ml、低於4 ng/ml、低於3 ng/ml、低於2 ng/ml或低於1 ng/ml,及/或
(i)(b)其中中和IC80為低於100 ng/ml、低於90 ng/ml、低於80 ng/ml、低於70 ng/ml、低於60 ng/ml、低於50 ng/ml、低於40 ng/ml、低於30 ng/ml或低於25 ng/ml,較佳低於50 ng/ml、低於40 ng/ml、低於30 ng/ml或低於25 ng/ml,及/或
(i)(c)其中中和EC90為低於300 ng/ml、低於200 ng/ml、低於100 ng/ml、低於90 ng/ml、低於80 ng/ml、低於70 ng/ml、低於60 ng/ml 50 ng/ml、低於40 ng/ml、低於30 ng/ml、低於25 ng/ml、低於20 ng/ml、低於15 ng/ml或低於10 ng/ml,其中進一步任擇地,該SARS-CoV-2假病毒包含VSV假病毒及/或MLV假病毒,及/或
(i)(d)該SARS-CoV-2假病毒包含VSV假病毒及/或MLV假病毒;及/或
(ii)藉由活SARS-CoV-2引起之感染,任擇地
(ii)(a)其中EC50為低於60 ng/ml、低於50 ng/ml、低於40 ng/ml、低於30 ng/ml、低於25 ng/ml、低於20 ng/ml、低於15 ng/ml、低於12 ng/ml、低於11 ng/ml、低於10 ng/ml、低於9 ng/ml、低於8 ng/ml、低於7 ng/ml、低於6 ng/ml、低於5/ng ml或低於4 ng/ml,較佳低於15 ng/ml、低於12 ng/ml、低於11 ng/ml、低於10 ng/ml、低於9 ng/ml、低於8 ng/ml、低於7 ng/ml、低於6 ng/ml、低於5/ng ml或低於4 ng/ml,及/或
(ii)(b)其中EC90為低於50 ng/ml、低於40 ng/ml、低於35 ng/ml、低於30 ng/ml、低於25 ng/ml、低於20 ng/ml、低於15 ng/ml、低於12 ng/ml、低於11 ng/ml、低於10 ng/ml、低於9 ng/ml、低於8 ng/ml、低於7 ng/ml、低於6 ng/ml、低於5/ng ml或低於4 ng/ml,較佳低於30 ng/ml、低於25 ng/ml、低於20 ng/ml、低於15 ng/ml或低於12 ng/ml,及/或
(ii)(c)經6小時時段,其中感染倍率為0.1;及/或
(iii)藉由表現,任擇地經工程化以過度表現DC-SIGN、L-SIGN、SIGLEC或ACE2之宿主細胞(例如,HEK293T細胞)中之活SARS-CoV-2的感染;及/或
(iv)藉由表現,任擇地經工程化以過度表現SIGLEC-1或ACE2之宿主細胞(例如,HEK293T細胞)中之活SARS-CoV-2的感染,其中中和感染包含完全中和感染。
實施例61.如實施例1-60中任一項之抗體或抗原結合片段,其能夠中和與包含SEQ ID NO.:3之一SARS-CoV-2表面醣蛋白相比在該表面醣蛋白中包含以下突變中之任一者的SARS-CoV-2變異體引起之感染:N501Y;S477N;N439K;L452R;E484K;K417N;T478K;S494P;A520S;N501T;A522S;Y453F;P384L。Embodiment 61. The antibody or antigen-binding fragment of any one of embodiments 1-60, which is capable of neutralizing a SARS-CoV-2 surface glycoprotein comprising one of SEQ ID NO.:3 on the surface glycoprotein. Infection by SARS-CoV-2 variants containing any of the following mutations: N501Y; S477N; N439K; L452R; E484K; K417N; T478K; S494P; A520S; N501T; A522S; Y453F; P384L.
實施例62.如實施例61之抗體或抗原結合片段,其能夠以一效能中和藉由該SARS-CoV-2變異體引起之感染,該效能比該抗體或抗原結合片段中和藉由包含SEQ ID NO.:3中所闡述之該表面醣蛋白胺基酸序列之SARS-CoV-2引起的感染之效能低不到3倍。Embodiment 62. The antibody or antigen-binding fragment of embodiment 61, which is capable of neutralizing infection caused by the SARS-CoV-2 variant with an efficacy greater than that of the antibody or antigen-binding fragment by comprising SARS-CoV-2 of the surface glycoprotein amino acid sequence set forth in SEQ ID NO.:3 is less than 3-fold less potent for infection by SARS-CoV-2.
實施例63.如實施例1-62中任一項之抗體或抗原結合片段,其能夠活化FcγRIIa、FcγRIIIa或二者,其中任擇地:(i)該FcγRIIa包含H131對偶基因;及/或 (ii)該FcγRIIIa包含V158對偶基因;及/或 (iii)活化係使用表現SARS-CoV-2 S之目標細胞,諸如CHO細胞,及表現NFAT驅動之報導子的報導子細胞,諸如螢光素酶確定。Embodiment 63. The antibody or antigen-binding fragment of any one of embodiments 1-62, which is capable of activating FcyRIIa, FcyRIIIa, or both, wherein optionally: (i) the FcyRIIa comprises an H131 counterpart gene; and/or (ii) the FcγRIIIa comprises the V158 counterpart gene; and/or (iii) Activation was determined using target cells expressing SARS-CoV-2 S, such as CHO cells, and reporter cells expressing NFAT-driven reporters, such as luciferase.
實施例64.如實施例1-63中任一項之抗體或抗原結合片段,其包含:
(a) SEQ ID NO.:6中所闡述之CH1-CH3胺基酸序列及SEQ ID NO.:8中所闡述之CL胺基酸序列;
(b) SEQ ID NO.:6中所闡述之CH1-CH3胺基酸序列及SEQ ID NO.:9中所闡述之CL胺基酸序列;
(c) SEQ ID NO.:7中所闡述之CH1-CH3胺基酸序列及SEQ ID NO.:8中所闡述之CL胺基酸序列;或
(d) SEQ ID NO.:7中所闡述之CH1-CH3胺基酸序列及SEQ ID NO.:9中所闡述之CL胺基酸序列。
實施例65.一種經分離抗體,其包含:
(i) SEQ ID NO.:767中所闡述之重鏈胺基酸序列;及
(ii) SEQ ID NO.:768中所闡述之輕鏈胺基酸序列。
實施例66.如實施例1-65中任一項之抗體或抗原結合片段,其在非人類靈長類動物中之活體內半衰期在20與30天之間、或在22與28天之間、或在23與27天之間、或在24與26天之間、或為約25天。
實施例67.如實施例1-66中任一項之抗體或抗原結合片段,其中該抗體或抗原結合片段能夠以約20至約30 ng/ml之IC50中和SARS-CoV-2感染及/或中和目標細胞之感染。
實施例68.如實施例1-66中任一項之抗體或抗原結合片段,其中該抗體或抗原結合片段能夠以約10至約20 ng/ml之IC50中和SARS-CoV-2感染及/或中和目標細胞之感染。Embodiment 68. The antibody or antigen-binding fragment of any one of embodiments 1-66, wherein the antibody or antigen-binding fragment is capable of neutralizing SARS-CoV-2 infection and/or with an IC50 of about 10 to about 20 ng/ml Or neutralize infection of target cells.
實施例69.如實施例1-66中任一項之抗體或抗原結合片段,其中該抗體或抗原結合片段能夠以約5至約10 ng/ml之IC50中和SARS-CoV-2感染及/或中和目標細胞之感染。Embodiment 69. The antibody or antigen-binding fragment of any one of embodiments 1-66, wherein the antibody or antigen-binding fragment is capable of neutralizing SARS-CoV-2 infection and/or with an IC50 of about 5 to about 10 ng/ml Or neutralize infection of target cells.
實施例70.如實施例1-66中任一項之抗體或抗原結合片段,其中該抗體或抗原結合片段能夠以約1至約5 ng/ml之IC50中和SARS-CoV-2感染及/或中和目標細胞之感染。Embodiment 70. The antibody or antigen-binding fragment of any one of embodiments 1-66, wherein the antibody or antigen-binding fragment is capable of neutralizing SARS-CoV-2 infection and/or with an IC50 of about 1 to about 5 ng/ml Or neutralize infection of target cells.
實施例71.如實施例1-70中任一項之抗體或抗原結合片段,其中該抗體或抗原結合片段能夠中和藉由SARS-CoV-2引起之感染,且不與人類ACE2競爭結合至該SARS-CoV-2 S蛋白, 其中任擇地,該中和包含在活體外感染模型中中和感染。Embodiment 71. The antibody or antigen-binding fragment of any one of embodiments 1-70, wherein the antibody or antigen-binding fragment is capable of neutralizing infection caused by SARS-CoV-2 and does not compete with human ACE2 for binding to The SARS-CoV-2 S protein, Wherein optionally, the neutralization comprises neutralizing infection in an in vitro infection model.
實施例72.一種抗體或其抗原結合片段,其與如實施例1至71中任一項之抗體或抗原結合片段競爭結合至SARS-CoV-2表面醣蛋白。Embodiment 72. An antibody or antigen-binding fragment thereof that competes with the antibody or antigen-binding fragment of any one of embodiments 1-71 for binding to a SARS-CoV-2 surface glycoprotein.
實施例73.一種經分離聚核苷酸,其編碼如實施例1至72中任一項之抗體或抗原結合片段,或編碼該抗體或該抗原結合片段之VH、重鏈、VL及/或輕鏈。Embodiment 73. An isolated polynucleotide encoding the antibody or antigen-binding fragment of any one of embodiments 1-72, or encoding the VH, heavy chain, VL and/or of the antibody or antigen-binding fragment light chain.
實施例74.如實施例73之聚核苷酸,其中該聚核苷酸包含去氧核糖核酸(DNA)或核糖核酸(RNA),其中該RNA任擇地包含信使核糖核酸(mRNA)。Embodiment 74. The polynucleotide of embodiment 73, wherein the polynucleotide comprises deoxyribonucleic acid (DNA) or ribonucleic acid (RNA), wherein the RNA optionally comprises messenger ribonucleic acid (mRNA).
實施例75.如實施例73或74之聚核苷酸,其經密碼子最佳化以表現於宿主細胞中。
實施例76.如實施例73至75中任一項之聚核苷酸,其包含與根據以下中之任一者或多者之該聚核苷酸序列具有至少50%、至少55%、至少60%、至少65%、至少70%、至少75%、至少80%、至少85%、至少90%、至少95%、至少97%、或至少99%之一致性,或包含根據以下中之任一者或多者之該聚核苷酸序列的聚核苷酸或由其組成:SEQ ID NO.: 30、31、40、41、50、51、60、61、70、71、73、82、83、92、93、95、104、105、114、115、116、117、118、127、128、137、138、206、207、216、217、226、227、236、237、239、248、249、251、253、262、263、272、273、282、283、292、293、295、297、306、307、309、311、320、321、330、331、340、341、377、378、387、388、397、398、407、408、417、418、427、428、433、442、443、452、453、462、463、472、473、482、483、492、493、502、503、512、513、552、523、532、533、542、543、552、553、562、563、572、573、582、583、592、593、602、603、612、613、622、623、690、691、700-737及739。Embodiment 76. The polynucleotide of any one of embodiments 73 to 75, comprising at least 50%, at least 55%, at least 50%, at least 55%, at least 60%, at least 65%, at least 70%, at least 75%, at least 80%, at least 85%, at least 90%, at least 95%, at least 97%, or at least 99% consistent, or including according to any of the following A polynucleotide of or consisting of one or more of the polynucleotide sequences: SEQ ID NO.: 30, 31, 40, 41, 50, 51, 60, 61, 70, 71, 73, 82 , 83, 92, 93, 95, 104, 105, 114, 115, 116, 117, 118, 127, 128, 137, 138, 206, 207, 216, 217, 226, 227, 236, 237, 239, 248 , 249, 251, 253, 262, 263, 272, 273, 282, 283, 292, 293, 295, 297, 306, 307, 309, 311, 320, 321, 330, 331, 340, 341, 377, 378 , 387, 388, 397, 398, 407, 408, 417, 418, 427, 428, 433, 442, 443, 452, 453, 462, 463, 472, 473, 482, 483, 492, 493, 502, 503 , 512, 513, 552, 523, 532, 533, 542, 543, 552, 553, 562, 563, 572, 573, 582, 583, 592, 593, 602, 603, 612, 613, 622, 623, 690 , 691, 700-737 and 739.
實施例77.如實施例73-76中任一項之聚核苷酸,其包含: (i)與SEQ ID NO.:407中所闡述之該核苷酸序列具有至少50%、至少55%、至少60%、至少65%、至少70%、至少75%、至少80%、至少85%、至少90%、至少95%、至少97%、或至少99%之一致性,或包含SEQ ID NO.:407中所闡述之該核苷酸序列的聚核苷酸或由其組成;及 (ii)與SEQ ID NO.:408、737或739中所闡述之該核苷酸序列具有至少50%、至少55%、至少60%、至少65%、至少70%、至少75%、至少80%、至少85%、至少90%、至少95%、至少97%、或至少99%之一致性,或包含SEQ ID NO.:408、737或739中所闡述之該核苷酸序列的聚核苷酸或由其組成。Embodiment 77. The polynucleotide of any one of embodiments 73-76, comprising: (i) having at least 50%, at least 55%, at least 60%, at least 65%, at least 70%, at least 75%, at least 80%, at least 85% of the nucleotide sequence set forth in SEQ ID NO.:407 %, at least 90%, at least 95%, at least 97%, or at least 99% identical, or a polynucleotide comprising or consisting of the nucleotide sequence set forth in SEQ ID NO.:407; and (ii) having at least 50%, at least 55%, at least 60%, at least 65%, at least 70%, at least 75%, at least 80% of the nucleotide sequence set forth in SEQ ID NO.: 408, 737 or 739 %, at least 85%, at least 90%, at least 95%, at least 97%, or at least 99% identical, or a polycore comprising the nucleotide sequence set forth in SEQ ID NO.:408, 737 or 739 Glycosides or consist of them.
實施例78.一種重組載體,其包含如實施例73-77中任一項之聚核苷酸。
實施例79.一種宿主細胞,其包含如實施例77中任一項之聚核苷酸及/或如實施例78之載體,其中該聚核苷酸對於該宿主細胞為異源性的。
實施例80.一種人類B細胞,其包含如實施例73-77中任一項之聚核苷酸,其中聚核苷酸對於該人類B細胞為異源性的及/或其中該人類B細胞為永生化的。
實施例81.一種組成物,其包含:(i)如實施例1至72中任一項之抗體或抗原結合片段;(ii)如實施例73至77中任一項之聚核苷酸;(iii)如實施例78之重組載體;(iv)如實施例79之宿主細胞;及/或(v)如實施例80之人類B細胞,及醫藥學上可接受之賦形劑、載劑或稀釋劑。
實施例82.如實施例81之組成物,其包含如實施例1至72中任一項之二個或更多個抗體或抗原結合片段。Embodiment 82. The composition of
實施例83.如實施例82之組成物,其包含: (i)第一抗體或抗原結合片段,其包含VH及VL,該VH包含或由如SEQ ID NO: 32中所闡述之胺基酸序列組成,且該VL包含或由如SEQ ID NO: 36中所闡述之胺基酸序列組成;及 (ii)第二抗體或抗原結合片段,其包含VH及VL,該VH包含或由如SEQ ID NO: 139中所闡述之胺基酸序列組成,且該VL包含或由如SEQ ID NO: 143中所闡述之胺基酸序列組成。Embodiment 83. The composition of embodiment 82, comprising: (i) a first antibody or antigen-binding fragment comprising VH and VL, the VH comprising or consisting of the amino acid sequence as set forth in SEQ ID NO:32, and the VL comprising or consisting of as SEQ ID NO:36 The amino acid sequence composition set forth in; and (ii) a second antibody or antigen-binding fragment comprising VH and VL, the VH comprising or consisting of the amino acid sequence as set forth in SEQ ID NO: 139, and the VL comprising or consisting of as SEQ ID NO: 143 The amino acid sequence composition described in .
實施例84.如實施例82之組成物,其包含:
(i)第一抗體或抗原結合片段,其包含重鏈可變域(VH)及輕鏈可變域(VL),該重鏈可變域(VH)包含CDRH1、CDRH2及CDRH3,且該輕鏈可變域(VL)包含CDRL1、CDRL2及CDRL3,其中該CDRH1、CDRH2及CDRH3分別包含SEQ ID NO: 33-35中所闡述之胺基酸序列或由其組成,且該CDRL1、CDRL2及CDRL3分別包含SEQ ID NO: 37-39中所闡述之胺基酸序列或由其組成;及
(ii)第二抗體或抗原結合片段,其包含重鏈可變域(VH)及輕鏈可變域(VL),該重鏈可變域(VH)包含CDRH1、CDRH2及CDRH3,且該輕鏈可變域(VL)包含CDRL1、CDRL2及CDRL3,其中該CDRH1、CDRH2及CDRH3分別包含SEQ ID NO: 140-142中所闡述之胺基酸序列或由其組成,且該CDRL1、CDRL2及CDRL3分別包含SEQ ID NO: 144-146中所闡述之胺基酸序列或由其組成。
實施例85.如實施例82之組成物,其包含: (i)第一抗體或抗原結合片段,其包含VH及VL,該VH包含或由如SEQ ID NO: 139或342中所闡述之胺基酸序列組成,且該VL包含或由如SEQ ID NO: 143或346中所闡述之胺基酸序列組成;及 (ii)第二抗體或抗原結合片段,其包含VH及VL,該VH包含或由如SEQ ID NO: 399、748、749、750、752、754、756、758、759或761中所闡述之胺基酸序列組成,且該VL包含或由如SEQ ID NO: 403、744或746中所闡述之胺基酸序列組成。Embodiment 85. The composition of embodiment 82, comprising: (i) a first antibody or antigen-binding fragment comprising a VH and a VL, the VH comprising or consisting of an amino acid sequence as set forth in SEQ ID NO: 139 or 342, and the VL comprising or consisting of an amino acid sequence as set forth in SEQ ID NO: 139 or 342 : the amino acid sequence composition set forth in 143 or 346; and (ii) a second antibody or antigen-binding fragment comprising a VH and a VL comprising or consisting of as set forth in SEQ ID NO: 399, 748, 749, 750, 752, 754, 756, 758, 759 or 761 consists of an amino acid sequence, and the VL comprises or consists of an amino acid sequence as set forth in SEQ ID NO: 403, 744 or 746.
實施例86.如實施例82之組成物,其包含: (i)第一抗體或抗原結合片段,其包含重鏈可變域(VH)及輕鏈可變域(VL),該重鏈可變域(VH)包含CDRH1、CDRH2及CDRH3,且該輕鏈可變域(VL)包含CDRL1、CDRL2及CDRL3,其中該CDRH1、CDRH2及CDRH3分別包含SEQ ID NO: 140-142或分別343-345中所闡述之胺基酸序列或由其組成,且該CDRL1、CDRL2及CDRL3分別包含SEQ ID NO: 144-146中所闡述之胺基酸序列或由其組成;及 (ii)第二抗體或抗原結合片段,其包含重鏈可變域(VH)及輕鏈可變域(VL),該重鏈可變域(VH)包含CDRH1、CDRH2及CDRH3,且該輕鏈可變域(VL)包含CDRL1、CDRL2及CDRL3,其中該CDRH1、CDRH2及CDRH3分別包含SEQ ID NO: 400、401及751、753、755、757、760中之任一者中所闡述之胺基酸序列或由其組成,且該CDRL1、CDRL2及CDRL3分別包含SEQ ID NO: 404、405及406、745及747中之任一者中所闡述之胺基酸序列或由其組成。Embodiment 86. The composition of embodiment 82, comprising: (i) a first antibody or antigen-binding fragment comprising a heavy chain variable domain (VH) and a light chain variable domain (VL), the heavy chain variable domain (VH) comprising CDRH1, CDRH2 and CDRH3, and the light The chain variable domain (VL) comprises CDRL1, CDRL2 and CDRL3, wherein the CDRH1, CDRH2 and CDRH3 comprise or consist of the amino acid sequences set forth in SEQ ID NOs: 140-142 or 343-345, respectively, and the CDRL1, CDRL2 and CDRL3 comprise or consist of the amino acid sequences set forth in SEQ ID NOs: 144-146, respectively; and (ii) a second antibody or antigen-binding fragment comprising a heavy chain variable domain (VH) and a light chain variable domain (VL), the heavy chain variable domain (VH) comprising CDRH1, CDRH2 and CDRH3, and the light The chain variable domain (VL) comprises CDRL1, CDRL2 and CDRL3, wherein the CDRH1, CDRH2 and CDRH3 comprise the amine set forth in any of SEQ ID NOs: 400, 401 and 751, 753, 755, 757, 760, respectively amino acid sequence, and the CDRL1, CDRL2 and CDRL3 comprise or consist of the amino acid sequence set forth in any one of SEQ ID NOs: 404, 405 and 406, 745 and 747, respectively.
實施例87.一種組成物,其包含:
(i)第一抗體或抗原結合片段,其包含
(i)(a)一VH,其包含如SEQ ID NO: 32中所闡述之胺基酸序列或由其組成,及
(i)(b)一VL,其包含如SEQ ID NO: 36中所闡述之胺基酸序列或由其組成;且
(ii)第二抗體或抗原結合片段,其包含
(ii)(a)一VH,其包含如SEQ ID NO: 139中所闡述之胺基酸序列或由其組成,及
(ii)(b)一VL,其包含如SEQ ID NO: 143中所闡述之胺基酸序列或由其組成。
實施例88.一種組成物,其包含:
(i)第一抗體或抗原結合片段,其能夠結合至SARS-CoV-2表面醣蛋白,且包含
(i)(a) VH,其包含分別SEQ ID NO.:400、402及766中所闡述之該等CDRH1、CDRH2及CDRH3胺基酸序列,及
(i)(b) VL,其包含分別SEQ ID NO.:404、405及406中所闡述之CDRL1、CDRL2及CDRL3胺基酸序列;且
(ii)第二抗體或抗原結合片段,其能夠結合至SARS-CoV-2表面醣蛋白,且包含
(ii)(a) VH,其包含分別SEQ ID NO.:140、141或344及142中所闡述之CDRH1、CDRH2及CDRH3胺基酸序列,及
(ii)(b) VL,其包含分別SEQ ID NO.:144、145及146中所闡述之CDRL1、CDRL2及CDRL3胺基酸序列。
實施例89.一種組成物,其包含:
(i)第一抗體或抗原結合片段,其能夠結合至SARS-CoV-2表面醣蛋白,且包含
(i)(a)一VH,其包含SEQ ID NO.:399中所闡述之胺基酸序列,及
(i)(b)一VL,其包含SEQ ID NO.:403或SEQ ID NO.:738中所闡述之胺基酸序列;及
(ii)第二抗體或抗原結合片段,其能夠結合至SARS-CoV-2表面醣蛋白,且包含
(ii)(a)一VH,其包含SEQ ID NO.:139或342中所闡述之胺基酸序列,及
(ii)(b)一VL,其包含SEQ ID NO.:143中所闡述之胺基酸序列。
實施例90.如實施例82至89中任一項之組成物,其中該第一抗體或抗原結合片段及該第二抗體或抗原結合片段各自包含IgG1 Fc多肽,其包含M428L突變及N434S突變。Embodiment 90. The composition of any one of embodiments 82-89, wherein the first antibody or antigen-binding fragment and the second antibody or antigen-binding fragment each comprise an IgGl Fc polypeptide comprising the M428L mutation and the N434S mutation.
實施例91.如實施例82至90中任一項之組成物,其中該第一抗體或抗原結合片段及該第二抗體或抗原結合片段各自包含IgG1 Fc多肽,其包含G236A突變、A330L突變及I332E突變。
實施例92.一種組成物,其包含囊封於載劑分子中之如實施例73至77中任一項之聚核苷酸,其中該載劑分子任擇地包含脂質、脂質衍生的遞送載劑,諸如脂質體、固體脂質奈米粒子、油性懸浮液、次微米級脂質乳液、脂質微泡、逆脂質微胞、耳蝸脂質體、脂質微管、脂質微柱、脂質奈米粒子(LNP)或奈米尺度平台。Embodiment 92. A composition comprising the polynucleotide of any one of embodiments 73 to 77 encapsulated in a carrier molecule, wherein the carrier molecule optionally comprises a lipid, a lipid-derived delivery vehicle Agents such as liposomes, solid lipid nanoparticles, oily suspensions, submicron lipid emulsions, lipid microbubbles, inverse lipid micelles, cochlear liposomes, lipid microtubules, lipid micropillars, lipid nanoparticles (LNPs) or nanoscale platforms.
實施例93.一種組成物,其包含:
(i)第一抗體或抗原結合片段,其能夠結合至SARS-CoV-2表面醣蛋白,且抑制該SARS-CoV-2表面醣蛋白與選自ACE2、DC-SIGN、L-SIGN及SIGLEC-1之第一細胞表面受體之間的相互作用;及
(ii)第二抗體或抗原結合片段,其能夠結合至SARS-CoV-2表面醣蛋白,且抑制該SARS-CoV-2表面醣蛋白與選自ACE2、DC-SIGN、L-SIGN及SIGLEC-1之第二細胞表面受體之間的相互作用,
其中該第一細胞表面受體與該第二細胞表面受體不同。
實施例94.一種治療個體之冠狀病毒感染,例如SARS-CoV-2感染的方法,該方法包含向該個體投予有效量之:(i)如實施例1至72中任一項之抗體或抗原結合片段;(ii)如實施例73至77中任一項之聚核苷酸;(iii)如實施例78之重組載體;(iv)如實施例79之宿主細胞;(v)如實施例80之人類B細胞;及/或(vi)如實施例81至93中任一項之組成物。Embodiment 94. A method of treating a coronavirus infection, such as a SARS-CoV-2 infection in an individual, the method comprising administering to the individual an effective amount of: (i) the antibody of any one of
實施例95.一種治療個體之冠狀病毒感染,例如SARS-CoV-2感染的方法,該方法包含向該個體投予:
(i)第一抗體或抗原結合片段,其能夠結合至SARS-CoV-2表面醣蛋白,且包含
(i)(a) VH,其包含分別SEQ ID NO.:400、402及766中所闡述之該等CDRH1、CDRH2及CDRH3胺基酸序列,及
(i)(b) VL,其包含分別SEQ ID NO.:404、405及406中所闡述之CDRL1、CDRL2及CDRL3胺基酸序列;且
(ii)第二抗體或抗原結合片段,其能夠結合至SARS-CoV-2表面醣蛋白,且包含
(ii)(a) VH,其包含分別SEQ ID NO.:140、141或344及142中所闡述之該等CDRH1、CDRH2及CDRH3胺基酸序列,及
(ii)(b) VL,其包含分別SEQ ID NO.:144、145及146中所闡述之CDRL1、CDRL2及CDRL3胺基酸序列。
實施例96.一種治療個體之冠狀病毒感染,例如SARS-CoV-2感染的方法,該方法包含向該個體投予:
(i)第一抗體或抗原結合片段,其能夠結合至SARS-CoV-2表面醣蛋白,且包含
(i)(a)一VH,其包含SEQ ID NO.:399中所闡述之胺基酸序列,及
(i)(b)一VL,其包含SEQ ID NO.:403或SEQ ID NO.:738中所闡述之胺基酸序列;且
(ii)第二抗體或抗原結合片段,其能夠結合至SARS-CoV-2表面醣蛋白,且包含
(ii)(a)一VH,其包含SEQ ID NO.:139或342中所闡述之胺基酸序列,及
(ii)(b)一VL,其包含SEQ ID NO.:143中所闡述之胺基酸序列。
實施例97.一種預防或治療或中和個體之冠狀病毒感染的方法,該方法包含向已接受第一抗體或抗原結合片段之個體投予第二抗體或抗原結合片段,該第一抗體或抗原結合片段包含: (i)(a)分別根據SEQ ID NO.:32及36之VH及VL胺基酸序列;或 (i)(b)分別根據SEQ ID NO.:33-35及37-39之CDRH1、CDRH2、CDRH3、CDRL1、CDRL2及CDRL3胺基酸序列; 該第二抗體或抗原結合片段包含: (ii)(a)根據SEQ ID NO.: 139之VH胺基酸序列及根據SEQ ID NO: 143之VL胺基酸序列;或 (ii)(b)分別根據SEQ ID NO: 140-142之CDRH1、CDRH2及CDRH3胺基酸,及分別根據SEQ ID NO: 144-146之CDRL1、CDRL2及CDRL3胺基酸序列。Embodiment 97. A method of preventing or treating or neutralizing a coronavirus infection in an individual, the method comprising administering to an individual who has received a first antibody or antigen-binding fragment a second antibody or antigen-binding fragment, the first antibody or antigen The binding fragment contains: (i) (a) VH and VL amino acid sequences according to SEQ ID NO.: 32 and 36, respectively; or (i) (b) CDRH1, CDRH2, CDRH3, CDRL1, CDRL2 and CDRL3 amino acid sequences according to SEQ ID NO.: 33-35 and 37-39, respectively; The second antibody or antigen-binding fragment comprises: (ii) (a) the VH amino acid sequence according to SEQ ID NO.: 139 and the VL amino acid sequence according to SEQ ID NO: 143; or (ii)(b) CDRH1, CDRH2 and CDRH3 amino acid sequences according to SEQ ID NOs: 140-142, respectively, and CDRL1, CDRL2 and CDRL3 amino acid sequences according to SEQ ID NOs: 144-146, respectively.
實施例98.一種預防或治療或中和個體之冠狀病毒感染的方法,該方法包含向已接受第一抗體或抗原結合片段之個體投予第二抗體或抗原結合片段,該第一抗體或抗原結合片段包含:
(i)(a)根據SEQ ID NO.: 139之VH胺基酸序列及根據SEQ ID NO: 143之VL胺基酸序列;或
(i)(b)分別根據SEQ ID NO: 140-142之CDRH1、CDRH2及CDRH3胺基酸序列;及分別根據SEQ ID NO: 144-146之CDRL1、CDRL2及CDRL3胺基酸序列;
該第二抗體或抗原結合片段包含:
(ii)(a)分別根據SEQ ID NO.:32及36之VH及VL胺基酸序列;或
(ii)(b)分別根據SEQ ID NO.:33-35及37-39之CDRH1、CDRH2、CDRH3、CDRL1、CDRL2及CDRL3胺基酸序列。
實施例99.一種預防或治療或中和個體之冠狀病毒感染的方法,該方法包含向已接受第一抗體或抗原結合片段之個體投予第二抗體或抗原結合片段,該第一抗體或抗原結合片段包含:
(i)(a)根據SEQ ID NO.: 139或342之VH胺基酸序列及根據SEQ ID NO: 143或346之VL胺基酸序列;或
(i)(b)分別根據SEQ ID NO: 140-142或分別343-345之CDRH1、CDRH2及CDRH3胺基酸序列;及分別根據SEQ ID NO: 144-146之CDRL1、CDRL2及CDRL3胺基酸序列;
該第二抗體或抗原結合片段包含:
(ii)(a)根據SEQ ID NO: 399、748、749、750、752、754、756、758、759或761之VH胺基酸序列,及根據SEQ ID NO: 403、744或746之VL胺基酸序列;或
(ii)(b)分別根據SEQ ID NO: 400、401及751、753、755、757、760中之任一者之CDRH1、CDRH2及CDRH3胺基酸序列,及分別根據SEQ ID NO: 404、405及406、745及747中之任一者之CDRL1、CDRL2及CDRL3胺基酸序列。
實施例100.一種預防或治療或中和個體之冠狀病毒感染的方法,該方法包含向已接受第一抗體或抗原結合片段之個體投予第二抗體或抗原結合片段,該第一抗體或抗原結合片段包含:
(i)(a)根據SEQ ID NO: 399、748、749、750、752、754、756、758、759或761之VH胺基酸序列,及根據SEQ ID NO: 403、744或746之VL胺基酸序列;或
(i)(b)分別根據SEQ ID NO: 400、401及751、753、755、757、760中之任一者之CDRH1、CDRH2及CDRH3胺基酸序列,及分別根據SEQ ID NO: 404、405及406、745及747中之任一者之CDRL1、CDRL2及CDRL3胺基酸序列;
該第二抗體或抗原結合片段包含:
(ii)(a)根據SEQ ID NO.: 139或342之VH胺基酸序列及根據SEQ ID NO: 143或346之VL胺基酸序列;或
(ii)(b)分別根據SEQ ID NO: 140-142或分別343-345之CDRH1、CDRH2及CDRH3胺基酸序列;及分別根據SEQ ID NO: 144-146之CDRL1、CDRL2及CDRL3胺基酸序列。
實施例101.如實施例95至100中任一項之方法,其中該第一抗體或抗原結合片段及該第二抗體或抗原結合片段各自包含IgG1 Fc多肽,其包含M428L突變及N434S突變。
實施例102.如實施例95至101中任一項之方法,其中該第一抗體或抗原結合片段及該第二抗體或抗原結合片段各自包含IgG1 Fc多肽,其包含G236A突變、A330L突變及I332E突變。
實施例103.一種治療個體之SARS-CoV-2感染的方法,該方法包含向該個體投予:
(i)第一抗體或抗原結合片段,其能夠結合至SARS-CoV-2表面醣蛋白,且抑制該SARS-CoV-2表面醣蛋白與選自ACE2、DC-SIGN、L-SIGN及SIGLEC-1之第一細胞表面受體之間的相互作用;及
(ii)第二抗體或抗原結合片段,其能夠結合至SARS-CoV-2表面醣蛋白,且抑制該SARS-CoV-2表面醣蛋白與選自ACE2、DC-SIGN、L-SIGN及SIGLEC-1之第二細胞表面受體之間的相互作用,
其中該第一細胞表面受體與該第二細胞表面受體不同。
實施例104.如技術方案1-72中任一項之抗體或抗原結合片段如實施例73至77中任一項之聚核苷酸、如實施例78之重組載體、如實施例79之宿主細胞、如實施例80之人類B細胞及/或如實施例81至93中任一項之組成物,其用於治療個體之SARS-CoV-2感染的方法中。
實施例105.如技術方案1-72中任一項之抗體或抗原結合片段、如實施例73至77中任一項之聚核苷酸、如實施例78之重組載體、如實施例79之宿主細胞、如實施例80之人類B細胞及/或如實施例81至93中任一項之組成物,其用於製備用以治療個體之冠狀病毒(例如,SARS-CoV-2)感染的藥劑。
實施例106.一種用於活體外診斷冠狀病毒(例如,SARS-CoV-2)感染之方法,該方法包含:
(i)使來自個體之樣品與如實施例1至72中任一項之抗體或抗原結合片段接觸;及
(ii)偵測包含抗原及該抗體,或包含抗原及該抗原結合片段之複合物。
實施例107.如實施例106之方法,其中該樣品包含自該個體分離之血液。表 2 . 序列
由自SARS-CoV-2感染恢復之人類患者分離單株抗體。簡言之,基於結合至三聚融合前構形中之SARS-CoV-2刺突蛋白的完整胞外域對EBV永生化記憶B細胞進行分類。生物素部分連接至刺突蛋白之C端,且經生物素標記刺突蛋白耦合至螢光鏈黴抗生物素蛋白(AF647螢光團),且用於染色B細胞,其隨後基於螢光分類以便結合至三聚融合前刺突蛋白。藉由此方法鑑別之單株抗體以重組方式表現於經表現重鏈及輕鏈之質體短暫共轉染的ExpiCHO細胞中。實例2 抗體與SARS -CoV -1 RBD 及SARS -CoV -2 RBD 之結合 Monoclonal antibodies isolated from human patients recovered from SARS-CoV-2 infection. Briefly, EBV-immortalized memory B cells were classified based on the intact ectodomain of the SARS-CoV-2 spike protein bound to the trimeric prefusion conformation. A biotin moiety was attached to the C-terminus of the spike protein, and the spike protein was biotin-labeled, coupled to fluorescent streptavidin (AF647 fluorophore), and used to stain B cells, which were then sorted based on fluorescence in order to bind to the trimeric prefusion spike protein. The monoclonal antibodies identified by this method were recombinantly expressed in ExpiCHO cells transiently co-transfected with plastids expressing the heavy and light chains. Example 2 Binding of antibodies to SARS - CoV -1 RBD and SARS - CoV -2 RBD
使用酶聯結免疫吸附分析(ELISA)評定由自SARS-CoV-2感染恢復之患者分離之單株抗體與SARS-CoV-1及SARS-CoV-2刺突蛋白之RBD的結合。Binding of monoclonal antibodies isolated from patients recovered from SARS-CoV-2 infection to the RBD of SARS-CoV-1 and SARS-CoV-2 spike proteins was assessed using an enzyme-linked immunosorbent assay (ELISA).
簡言之,96孔盤用SARS-CoV-2 RBD (內部生產;βCoV/武漢-Hu-1/2019之刺突蛋白的殘基331-550,寄存編號MN908947)或SARS-CoV (在本文中亦描述為SARS-CoV-1) RBD (Sino Biological)塗佈。洗滌各孔,且在室溫下用PBS+1%BSA阻斷1小時,且隨後用連續稀釋的重組單株抗體在室溫下培育1小時。藉由在室溫下培育經鹼性磷酸酶共軛之山羊抗人類IgG (Southern Biotechnology:2040-04)1小時來偵測結合的抗體,且藉由含1 mg/ml對硝基苯磷酸受質之0.1 M甘胺酸緩衝液(pH 10.4)在室溫下顯影30分鐘。在ELISA讀取器(Powerwave 340/96分光光度計,BioTek)中量測在405 nm之波長下之光學密度(OD)值。Briefly, 96-well plates were prepared with SARS-CoV-2 RBD (in-house produced; residues 331-550 of the spike protein of βCoV/Wuhan-Hu-1/2019, accession number MN908947) or SARS-CoV (in this paper Also described as SARS-CoV-1) RBD (Sino Biological) coating. Wells were washed and blocked with PBS + 1% BSA for 1 hour at room temperature and then incubated with serial dilutions of recombinant monoclonal antibody for 1 hour at room temperature. Bound antibody was detected by incubating alkaline phosphatase-conjugated goat anti-human IgG (Southern Biotechnology: 2040-04) for 1 hr at room temperature, and by incubation with 1 mg/ml p-nitrophenyl phosphate. Development was performed in 0.1 M glycine buffer (pH 10.4) at room temperature for 30 minutes. Optical density (OD) values were measured at a wavelength of 405 nm in an ELISA reader (Powerwave 340/96 spectrophotometer, BioTek).
ELISA分析結果展示於圖1A-1D中。在各圖中,與SARS-CoV-2之RBD的結合展示於上圖中,且與SARS-CoV-1之RBD的結合展示於下部圖中。所計算的EC50值(以ng/ml為單位)展示於圖右側的框及表3中。表3 . 抗體與SARS RBD (ELISA ) 之結合 (EC50 ng /ml )
使用其他抗體進行使用相同程序之其他分析。結果展示於圖8A及圖8B中。在此等圖中之每一者中,與SARS-CoV-2 RBD之結合展示於左側圖中,且與SARS-CoV-1 RBD之結合展示於右側圖中。所計算的EC50值(以ng/ml為單位)展示於各圖右側的框中。Other assays using the same procedure were performed using other antibodies. The results are shown in Figures 8A and 8B. In each of these figures, binding to the SARS-CoV-2 RBD is shown in the left panel, and binding to the SARS-CoV-1 RBD is shown in the right panel. Calculated EC50 values (in ng/ml) are shown in the boxes to the right of each figure.
使用其他抗體進行相同程序。結果展示於圖10A-10E中。在此等圖中之每一者中,與SARS-CoV-2 RBD之結合展示於上圖中,且與SARS-CoV-1之SARSRBD的結合展示於下圖中。所計算的EC50值(以ng/ml為單位)當可用時展示於各圖右側的框中。在此分析中,抗體S2E12 (SEQ ID NO.:399之VH胺基酸序列;SEQ ID NO.:403之VL胺基酸序列)以43.40 ng/ml之EC50結合SARS-CoV-2 RBD。The same procedure was performed with other antibodies. The results are shown in Figures 10A-10E. In each of these figures, binding to the SARS-CoV-2 RBD is shown in the upper figure, and binding to the SARS-CoV-1 SARS RBD is shown in the lower figure. Calculated EC50 values (in ng/ml) are shown in the box to the right of each figure when available. In this assay, antibody S2E12 (VH amino acid sequence of SEQ ID NO.: 399; VL amino acid sequence of SEQ ID NO.: 403) bound SARS-CoV-2 RBD with an EC50 of 43.40 ng/ml.
使用類似方法確定額外抗體與SARS-CoV-2 RBD之結合。結果展示於圖22A及22B中。所計算的EC50值展示於各圖式之右側的框。實例3 抗體與SARS -CoV -1 及SARS -CoV -2 刺突蛋白及與SARS -CoV -1 及SARS -CoV -2 RBD 之結合 Similar methods were used to determine the binding of additional antibodies to the SARS-CoV-2 RBD. The results are shown in Figures 22A and 22B. Calculated EC50 values are shown in the boxes to the right of each figure. Example 3 Binding of Antibodies to SARS - CoV -1 and SARS - CoV -2 Spike Proteins and to SARS - CoV -1 and SARS - CoV -2 RBDs
藉由酶聯免疫吸附分析(ELISA)評定由自SARS-CoV-2感染恢復之患者分離之某些人類單株抗體與SARS-CoV-2之刺突蛋白及與SARS-CoV-1之RBD及SARS-CoV-2刺突蛋白的結合。Assessment of certain human monoclonal antibodies isolated from patients recovered from SARS-CoV-2 infection with the spike protein of SARS-CoV-2 and with RBD and SARS-CoV-1 by enzyme-linked immunosorbent assay (ELISA) Binding of the SARS-CoV-2 spike protein.
簡言之,96孔盤用SARS-CoV刺突蛋白S1次單位蛋白質(Sino Biological)、SARS-CoV-2 RBD (內部產生;βCoV/武漢-Hu-1/2019之刺突蛋白的殘基331-550,寄存編號MN908947)或SARS-CoV RBD (Sino Biological)塗佈。洗滌各孔,且在室溫下用PBS+1%BSA阻斷1小時,且隨後用連續稀釋的重組單株抗體在室溫下培育1小時。藉由在室溫下培育經鹼性磷酸酶共軛之山羊抗人類IgG (Southern Biotechnology:2040-04)1小時來偵測結合的抗體,且藉由含1 mg/ml對硝基苯磷酸受質之0.1 M甘胺酸緩衝液(pH 10.4)在室溫下顯影30分鐘。在ELISA讀取器(Powerwave 340/96分光光度計,BioTek)中量測在405 nm之波長下之光學密度(OD)值。Briefly, 96-well plates were prepared with SARS-CoV spike protein S1 subunit protein (Sino Biological), SARS-CoV-2 RBD (in-house generated; residue 331 of the spike protein of βCoV/Wuhan-Hu-1/2019). -550, Accession No. MN908947) or SARS-CoV RBD (Sino Biological) coating. Wells were washed and blocked with PBS + 1% BSA for 1 hour at room temperature and then incubated with serial dilutions of recombinant monoclonal antibody for 1 hour at room temperature. Bound antibody was detected by incubating alkaline phosphatase-conjugated goat anti-human IgG (Southern Biotechnology: 2040-04) for 1 hr at room temperature, and by incubation with 1 mg/ml p-nitrophenyl phosphate. Development was performed in 0.1 M glycine buffer (pH 10.4) at room temperature for 30 minutes. Optical density (OD) values were measured at a wavelength of 405 nm in an ELISA reader (Powerwave 340/96 spectrophotometer, BioTek).
ELISA分析結果展示於圖4A-4N中。所計算的EC50值(以ng/ml為單位)展示於各圖右側的框中。ELISA analysis results are shown in Figures 4A-4N. Calculated EC50 values (in ng/ml) are shown in the boxes to the right of each figure.
使用類似方法評定額外單株抗體與SARS-CoV-1及SARS-CoV-2之刺突蛋白及與SARS-CoV-1及SARS-CoV-2之刺突蛋白RBD的結合。結果展示於圖18A-18E中。所計算的EC50值(ng/ml)展示於各圖右側的框中。Similar methods were used to assess the binding of additional monoclonal antibodies to the SARS-CoV-1 and SARS-CoV-2 spike proteins and to the SARS-CoV-1 and SARS-CoV-2 spike proteins RBD. The results are shown in Figures 18A-18E. Calculated EC50 values (ng/ml) are shown in the boxes to the right of each figure.
藉由類似方法確定額外單株抗體與SARS-CoV-1刺突蛋白、SARS-CoV-1刺突蛋白RBD及SARS-CoV-2刺突蛋白RBD之結合。結果展示於圖20A、20B、21A及21B中。圖式右側的框展示所計算的EC50值(ng/ml)。實例 4 抗體與人類 ACE2 競爭性結合以結合 RBD Binding of additional monoclonal antibodies to the SARS-CoV-1 spike, the SARS-CoV-1 spike RBD, and the SARS-CoV-2 spike RBD was determined by a similar method. The results are shown in Figures 20A, 20B, 21A and 21B. The boxes to the right of the figures show the calculated EC50 values (ng/ml). Example 4 Antibodies competitively bind to human ACE2 for RBD binding
藉由競爭ELISA來量測重組單株抗體及人類ACE2與RBD之競爭性結合。重組抗體係使用由自SARS-CoV-2感染恢復之患者分離的單株抗體產生。Competitive binding of recombinant monoclonal antibodies and human ACE2 to RBD was measured by competition ELISA. Recombinant antibody systems were generated using monoclonal antibodies isolated from patients who had recovered from SARS-CoV-2 infection.
簡言之,ELISA盤係用重組人類ACE2 (內部產生)塗佈。在PBS中在2 ug/ml下用ACE2進行塗佈。使盤在4℃下培育隔夜,且在室溫下用阻斷劑酪蛋白(來自Thermofisher之1%酪蛋白)進行阻斷1小時。在37℃下使單株抗體之連續稀釋液與SARS-CoV-2 RBD在20ng/ml (RBD與小鼠Fc稠合,來自Sino Biological)下一起培育30分鐘,且隨後轉移至經ACE2塗佈之盤上,在室溫下再培育。洗滌盤且使用多株山羊抗小鼠Fc-AP抗體(Southern Biotech)偵測RBD與ACE2之結合。在額外洗滌之後,添加AP受質pNPP (Sigma)且使盤在室溫下培育20分鐘,隨後使用分光光度計(Powerwave340 Biotek)量測在405nm下之吸附量。結果展示於圖2中。Briefly, ELISA plates were coated with recombinant human ACE2 (generated in-house). Coating was performed with ACE2 at 2 ug/ml in PBS. The plates were incubated overnight at 4°C and blocked with the blocking agent casein (1% casein from Thermofisher) for 1 hour at room temperature. Serial dilutions of monoclonal antibodies were incubated with SARS-CoV-2 RBD at 20ng/ml (RBD fused to mouse Fc from Sino Biological) for 30 minutes at 37°C and then transferred to ACE2-coated on a plate and re-incubated at room temperature. Plates were washed and binding of RBD to ACE2 was detected using a polyclonal goat anti-mouse Fc-AP antibody (Southern Biotech). After additional washing, AP substrate pNPP (Sigma) was added and the disc was incubated at room temperature for 20 minutes before measuring the amount of adsorption at 405 nm using a spectrophotometer (Powerwave 340 Biotek). The results are shown in FIG. 2 .
使用與其他單株抗體類似的方法進行進一步分析。結果展示於圖13A、13B、23A及23B中。在此等圖中,所計算的IC50值展示於各圖式右側。實例5 藉由重組人類單株抗體中和SARS -CoV -2 假模式化MLV Further analysis was performed using methods similar to other monoclonal antibodies. The results are shown in Figures 13A, 13B, 23A and 23B. In these figures, the calculated IC50 values are shown to the right of each figure. Example 5 Neutralization of SARS- CoV -2 pseudopatterned MLV by recombinant human monoclonal antibodies
以重組方式表現由自SARS-CoV-2感染恢復之患者分離之單株抗體且在中和分析中針對SARS-CoV-2假模式化病毒進行測試。Monoclonal antibodies isolated from patients recovered from SARS-CoV-2 infection were recombinantly expressed and tested against SARS-CoV-2 pseudo-patterned virus in neutralization assays.
簡言之,使用經SARS-CoV-2刺突蛋白(SARS-CoV-2pp)假模式化之鼠白血病病毒(MLV)。VeroE6細胞係用作目標細胞,且在添加病毒及抗體之前一天接種。SARS-CoV-2pp用胰蛋白酶TPCK以10ug/ml活化。將活化的SARS-CoV-2pp添加至抗體之連續稀釋液中且培育48小時。抗體之起始濃度為每抗體5ug/ml,3倍稀釋液。在抽吸細胞培養物上清液且添加Bio-Glo受質(Promega)之後量測發光。Briefly, murine leukemia virus (MLV) pseudopatterned with the SARS-CoV-2 spike protein (SARS-CoV-2pp) was used. VeroE6 cell line was used as target cells and was seeded one day before virus and antibody addition. SARS-CoV-2pp was activated with trypsin TPCK at 10ug/ml. Activated SARS-CoV-2pp was added to serial dilutions of antibodies and incubated for 48 hours. The initial concentration of antibody was 5ug/ml per antibody, 3-fold dilution. Luminescence was measured after aspiration of cell culture supernatant and addition of Bio-Glo substrate (Promega).
結果展示於圖3A-3F中。所計算的EC50值(以ng/ml為單位)展示於此等圖中之每一者的右側上。表4展示以ng/ml為單位之所計算的IC50、IC80及IC90值。表4 . 針對經 SARS - CoV - 2 S 蛋白 假模式化之 MLV 的中和
以重組方式表現由自SARS-CoV-2感染恢復之患者分離之其他單株抗體且使用相同程序在中和分析中針對SARS-CoV-2假模式化病毒進行測試。結果展示於圖5A-5D及圖7A-7D中。圖7D中標記為「S2H58」之抗體包含SEQ ID NO.:228中所闡述之VH胺基酸序列及SEQ ID NO.:238中所闡述之VL胺基酸序列。圖5A-5D中之抗體所計算的EC50值展示於各圖右側的框中。圖7A至圖7D中之抗體所計算的EC50及EC90值展示於表5中。表5 . 針對經 SARS - CoV - 2 S 蛋白 假模式化之 MLV 的中和
以重組方式表現由自SARS-CoV-2感染恢復之患者分離之其他單株抗體且使用相同程序在中和分析中針對SARS-CoV-2假模式化病毒進行測試。結果展示於圖9A-9F中。所計算之IC50、IC80及IC90值展示於各圖中之圖式下方。圖9E中展示之抗體S2E12包含SEQ ID NO.:399之VH胺基酸序列(分別為SEQ ID NO.:400、401及766之CDRH1-H3)及SEQ ID NO.:403之VL胺基酸序列(分別為SEQ ID NO.:404-406之CDRL1-CDRL3)。Additional monoclonal antibodies isolated from patients recovered from SARS-CoV-2 infection were recombinantly expressed and tested against SARS-CoV-2 pseudo-patterned virus in neutralization assays using the same procedure. The results are shown in Figures 9A-9F. The calculated IC50, IC80 and IC90 values are shown below the graph in each figure. Antibody S2E12 shown in Figure 9E comprises the VH amino acid sequence of SEQ ID NO.:399 (CDRH1-H3 of SEQ ID NO.:400, 401 and 766, respectively) and the VL amino acid sequence of SEQ ID NO.:403 Sequences (CDRL1-CDRL3 of SEQ ID NO.: 404-406, respectively).
使用類似方法分析藉由其他抗體之感染的中和。結果展示於圖11A-11D中。所計算的IC50、IC80及IC90值展示於各圖之右側。Neutralization of infection by other antibodies was analyzed using a similar method. The results are shown in Figures 11A-11D. Calculated IC50, IC80 and IC90 values are shown to the right of each figure.
使用類似方法在針對SARS-CoV-2假模式化病毒之中和分析中測試其他抗體。結果展示於圖17A-17C中。所計算的IC50、IC80及IC90值展示於各圖下方。Other antibodies were tested in neutralization assays against SARS-CoV-2 pseudo-patterned virus using similar methods. The results are shown in Figures 17A-17C. Calculated IC50, IC80 and IC90 values are shown below each figure.
使用類似方法在針對SARS-CoV-2假模式化病毒之中和分析中測試其他抗體。結果展示於圖19A-19E中。所計算之IC50、IC80及IC90值展示於各圖中之圖式右側。實例6 活SARS -CoV -2 之 抗體中和 Other antibodies were tested in neutralization assays against SARS-CoV-2 pseudo-patterned virus using similar methods. The results are shown in Figures 19A-19E. The calculated IC50, IC80 and IC90 values are shown to the right of the graph in each figure. Example 6 Antibody Neutralization of Live SARS - CoV -2
以重組方式表現由自SARS-CoV-2感染恢復之患者分離之單株抗體且在中和分析中針對活SARS-CoV-2病毒進行測試。Monoclonal antibodies isolated from patients recovered from SARS-CoV-2 infection were recombinantly expressed and tested against live SARS-CoV-2 virus in neutralization assays.
簡言之,使在補充有10% FBS (VWR)及1x青黴素/鏈黴素(Thermo Fisher Scientific)之DMEM中培養之Vero E6細胞在20,000個細胞/孔下接種於白色96孔盤中且附著隔夜。在37℃下在BSL-3設施中使單株抗體之連續1:4稀釋液與200 pfu之SARS-CoV-2 (分離株USA-WA1/2020,繼代3,在Vero E6細胞中繼代)一起培育30分鐘。移除細胞上清液且將病毒-抗體混合物添加至細胞中。24小時感染後,用4%多聚甲醛固定細胞30分鐘,接著二個PBS (pH 7.4)洗滌,且用含0.25% Triton X-100之PBS滲透30分鐘。在5%奶粉/PBS中阻斷30分鐘之後,將細胞與靶向SARS-CoV-2核衣殼蛋白(Sino Biological,cat. 40143-R001)之一級抗體在1:2000稀釋下一起培育1小時。在洗滌且與與1 µg/ml Hoechst33342混合之二級經Alexa647標記之抗體一起培育1小時之後,使盤在自動細胞成像讀取器上(Cytation 5,Biotek)成像,且使用製造商提供的軟體對核衣殼-陽性細胞進行計數。使用Prism軟體(GraphPad Prism 8.0)處理資料。Briefly, Vero E6 cells cultured in DMEM supplemented with 10% FBS (VWR) and 1x penicillin/streptomycin (Thermo Fisher Scientific) were seeded at 20,000 cells/well in white 96-well dishes and attached. overnight. Serial 1:4 dilutions of monoclonal antibodies were combined with 200 pfu of SARS-CoV-2 (isolate USA-WA1/2020,
結果展示於圖6A及6B及表6及7 (EC50及EC90值,ng/ml)中。所計算的IC50值(ng/ml)展示於表8中。表6.
使用類似方法在針對活SARS-CoV-2病毒之中和分析中測試二十二個其他抗體,以及比較抗體S309-v2 (SEQ ID NO.: 342中所闡述之VH,SEQ ID NO.: 346中所闡述之VL (分別為SEQ ID NO.:343-345及347-349中所闡述之CDRH1-H3及L1-L3))。結果展示於圖16A-16D中。S2H58-v2包含SEQ ID NO: 228中所闡述之VH胺基酸序列及SEQ ID NO: 238中所闡述之VL胺基酸序列(κ輕鏈)。S2E12包含SEQ ID NO.:399中所闡述之VH胺基酸序列(分別為SEQ ID NO.:400、401及766中所闡述之CDRH1-H3)及SEQ ID NO.:403中所闡述之VL胺基酸序列(分別為SEQ ID NO.:404-406中所闡述之CDRL1-L3)。所計算的IC50值(ng/ml)展示於表9-12中。所計算的EC50及EC90值(ng/ml)展示於表13-16中。表9.
使用類似方法使用額外單株抗體進行中和分析。結果展示於圖25A及25B中。圖25A展示四個抗體以及比較抗體S309 N55Q LS及S2X193之結果。S309 N55Q LS (在本文中亦稱為S309-v2)包含SEQ ID NO:342中所闡述之VH序列及SEQ ID NO: 346中所闡述之VL序列,且包含Fc區中之M428L及N434S突變。圖25B展示抗體S2X129及S2X132,以及四個比較抗體之結果。IC50及內插EC50及EC90值(ng/ml)展示於表17中。表17.
使用VSV-luc(刺突蛋白D19)假病毒評定藉由其他抗體(表示為具有野生型或經M428L/N434S (「LS」)-修飾之Fc之重組IgG1)之中和。曲線展示於圖26中;IC50值及內插EC50及EC90值(ng/ml)展示於表18中。表18.
亦測試此等抗體之活SARS-CoV-2的中和。曲線展示於圖27中;資料來自一式三份孔SARS-CoV-2-luc,MOI 0.1,6h感染。IC50及內插EC50及EC90值(ng/ml)展示於表19中。表19.
使用抗體S2X16、S2X30、S2X35及S2X47或其經工程化變異體之VH及VL序列產生重組IgG1抗體。如表20中所指示產生組合。抗體中之每一者由瞬時轉染及表現編碼HD 293F細胞(GenScript)中之重組抗體的質體載體產生。在第4天時收穫細胞,且藉由西方墨點法及蛋白質A效價分析驗證IgG表現。表20.
使用單株抗體S2H58及S2N22或其經工程化變異體之VH及VL序列產生重組IgG1抗體。如表21中所指示產生組合。抗體中之每一者由瞬時轉染及表現編碼HD 293F細胞(GenScript)中之重組抗體的質體載體產生。在第4天時收穫細胞,且藉由西方墨點法及蛋白質A效價分析驗證IgG表現。表21.
使用單株抗體S2E12及其經工程化變異體之VH及VL序列產生重組IgG1抗體。S2E12及某些經工程化S2E12變異體之V區胺基酸序列概述於表22中。表22.
以重組方式表現由自SARS-CoV-2感染恢復之患者分離之人類單株抗體且在中和分析中針對SARS-CoV-2假模式化病毒(VSV)進行測試。Human monoclonal antibodies isolated from patients recovered from SARS-CoV-2 infection were recombinantly expressed and tested against SARS-CoV-2 pseudopatterned virus (VSV) in neutralization assays.
重組單株抗體經連續稀釋且在37℃下與恆定量之經SARS-CoV-2 (菌株βCoV/武漢-Hu-1/2019,寄存編號MN908947)假模式化的VSV-deltaG-luc一起培育1.5小時。隨後將VeroE6細胞添加於完全DMEM培養基中且使盤在37℃下培育24小時。為了量測在經感染細胞中表現之螢光素酶的量,抽吸培養基且添加升溫至室溫之螢光素酶受質Bio-Glo螢光素酶分析系統(Promega AG)。在暗處在振盪器上培育10分鐘之後,使用1秒積分時間在光度計中量測訊號。Recombinant monoclonal antibodies were serially diluted and incubated with a constant amount of VSV-deltaG-luc pseudopatterned with SARS-CoV-2 (strain βCoV/Wuhan-Hu-1/2019, accession number MN908947) at 37°C for 1.5 Hour. VeroE6 cells were then added to complete DMEM medium and the plates were incubated at 37°C for 24 hours. To measure the amount of luciferase expressed in infected cells, the medium was aspirated and the luciferase substrate, Bio-Glo Luciferase Assay System (Promega AG), warmed to room temperature was added. After 10 min incubation on a shaker in the dark, the signal was measured in a luminometer using a 1 second integration time.
某些單株抗體之結果展示於圖12A-12D中。所計算的IC50及IC90值(ng/ml)展示於各圖下方。實例11 使用Octet 之 抗體與RBD 之結合 Results for certain monoclonal antibodies are shown in Figures 12A-12D. Calculated IC50 and IC90 values (ng/ml) are shown below each figure. Example 11 Binding of antibodies to RBD using Octet
藉由Octet來量測抗體S2X193、S2X195、S2X219、S2X244、S2X246、S2X256、S2X269及S2X278針對SARS-CoV-2 RBD之結合親和力及親合力。使抗體在2.7 µg/ml下負載於蛋白質A針上。使SARS-CoV-2 RBD在6 µg/ml、1.5 µg/ml或0.4 µg/ml下負載5分鐘。量測解離7分鐘。結果展示於圖14A-14H中。在各圖式中,豎直虛線指示解離期之起始。The binding affinity and avidity of antibodies S2X193, S2X195, S2X219, S2X244, S2X246, S2X256, S2X269 and S2X278 for SARS-CoV-2 RBD were measured by Octet. The antibody was loaded onto the Protein A needle at 2.7 µg/ml. SARS-CoV-2 RBD was loaded at 6 µg/ml, 1.5 µg/ml or 0.4 µg/ml for 5 minutes. Dissociation was measured for 7 minutes. The results are shown in Figures 14A-14H. In each figure, the vertical dashed line indicates the start of the dissociation period.
亦藉由Octet來量測抗體S2X193、S2X195、S2X219、S2X244、S2X246、S2X256、S2X269及S2X278,以及四個比較抗體與SARS-CoV-1 RBD之結合親和力及親合力。使抗體在2.7 µg/ml下負載於蛋白質A針上。使SARS-CoV-1 RBD在6 µg/ml下負載5分鐘。量測解離7分鐘。結果展示於圖15中。在各圖式中,豎直虛線指示解離期之起始。實例12 SARS-CoV-2 刺突蛋白之定量表位- 特異性血清學 The binding affinity and avidity of antibodies S2X193, S2X195, S2X219, S2X244, S2X246, S2X256, S2X269 and S2X278, as well as four comparative antibodies to SARS-CoV-1 RBD were also measured by Octet. The antibody was loaded onto the Protein A needle at 2.7 µg/ml. The SARS-CoV-1 RBD was loaded at 6 µg/ml for 5 minutes. Dissociation was measured for 7 minutes. The results are shown in FIG. 15 . In each figure, the vertical dashed line indicates the start of the dissociation period. Example 12 Quantitative epitope- specific serology of the SARS-CoV-2 spike protein
SARS-CoV-2刺突蛋白抗體結合藉由抗體競爭分析、cryo-EM資料及結晶學資料分析。根據此分析,鑑定刺突蛋白RBD抗原位點Ia、Ib、Ic、Id、II及IV。圖24中展示表現此等位點及在各位點內結合之抗體的圖。實例13 S2E12 抗體與 SARS - CoV - 2 RBD 之結合 SARS-CoV-2 spike protein antibody binding was analyzed by antibody competition analysis, cryo-EM data and crystallographic data. From this analysis, the spike protein RBD antigenic sites Ia, Ib, Ic, Id, II and IV were identified. A graph representing these sites and antibodies bound within each site is shown in FIG. 24 . Example 13 Binding of S2E12 antibody to SARS - CoV - 2 RBD
藉由表面電漿子共振(SPR)來量測S2E12及S2E12變異體抗體與SARS-CoV-2 RBD之結合。使用單循環動力學方法用Biacore T200儀器進行SPR實驗。在表面上捕獲抗體且注射濃度增加之純化的SARS-CoV-2 RBD。監測締合及解離動力學,且擬合至結合模型,以確定親和力。Binding of S2E12 and S2E12 variant antibodies to SARS-CoV-2 RBD was measured by surface plasmon resonance (SPR). SPR experiments were performed with a Biacore T200 instrument using the single-cycle kinetic method. Antibodies were captured on the surface and increasing concentrations of purified SARS-CoV-2 RBD were injected. Association and dissociation kinetics were monitored and fitted to binding models to determine affinity.
結果展示於表23及24中。抗體「S2E12-11」係自經轉型以表現S2E12抗體之CHO細胞的上清液獲得。使用在經轉型HEK細胞中產生之經純化抗體產生抗體S2E12 WT (SEQ ID NO.:399之VH,SEQ ID NO.:403之VL)。KD/KD_WT列出所指示抗體之KD值除以S2E12 WT之KD值。KD_WT/KD列出S2E12 WT之KD值除以所指示抗體之KD值。空白細胞指示使用此分析未量測到結合。表 23.
研究SARS-CoV-2感染之抗體中和的機制。在以下實驗中,除非另外規定,否則S309抗體(SEQ ID NO.:139之VH、SEQ ID NO.:143之VL)表示為具有M428L及N434S突變之重組IgG1。研究ACE2過度表現對感染之S309抗體中和的作用。Vero E6或Vero E6-TMPRSS2細胞在S309 (10 µg/ml)存在下經SARS-CoV-2 (分離株USA-WA1/2020)在MOI 0.01下轉染。感染後24 h固定細胞,對病毒核衣殼蛋白免疫染色且定量。在經抗體處理細胞中核蛋白殼染色有效地不存在。S309在Vero E6細胞中的IC50 (ng/ml)為65且在Vero E6-TMPRSS2中為91 (資料未示出)。To study the mechanism of antibody neutralization of SARS-CoV-2 infection. In the following experiments, unless otherwise specified, the S309 antibody (VH of SEQ ID NO.: 139, VL of SEQ ID NO.: 143) is represented as recombinant IgGl with M428L and N434S mutations. To investigate the effect of ACE2 overexpression on S309 antibody neutralization of infection. Vero E6 or Vero E6-TMPRSS2 cells were transfected with SARS-CoV-2 (isolate USA-WA1/2020) at MOI 0.01 in the presence of S309 (10 µg/ml). Cells were fixed 24 h after infection, and viral nucleocapsid proteins were immunostained and quantified. Nucleocapsid staining was effectively absent in antibody-treated cells. The IC50 (ng/ml) of S309 was 65 in Vero E6 cells and 91 in Vero E6-TMPRSS2 (data not shown).
一組七個細胞株(HeLa、293T (wt)、Vero E6、Huh7、293T ACE2、MRC 5-ACE2-TMPRSS2、A549-ACE2-TMPRSS2純系5、A549-ACE2-TMPRSS2純系10)在S309存在下經SARS-CoV-2-Nluc或經SARS-CoV-2刺突蛋白假模式化之VSV轉染。螢光素酶訊號在感染後24 h定量。S309最大中和值如表25中所示。表 25 . S309 之 最大中和值
S2E12中和資料展示於圖53 (SARS-CoV-2-Nluc)及圖54 (假模式化VSV)中。值得注意地,S2E12在所有目標細胞上表現出相當的中和活性。S2E12 neutralization data are shown in Figure 53 (SARS-CoV-2-Nluc) and Figure 54 (pseudo-patterned VSV). Notably, S2E12 exhibited comparable neutralizing activity on all target cells.
純化的螢光標記之SARS-CoV-2刺突蛋白與此等細胞株之結合係藉由流式細胞測量術定量。HeLa及239T WT細胞已具有最低MFI,接著Huh7及VeroE6細胞。293T ACE2細胞(最高)、MRC 5-ACE2-TMPRSS2 (第三高)、A549-ACE2-TMPRSS2純系5 (第四高)及A549-ACE2-TMPRSS2純系10 (第二高)具有更高MFI。確定在S309之刺突蛋白結合最大中和潛力之間的相關性分析;針對二種病毒模型之S309 Spearman相關值為r =-0.94。p=0.017。參見圖55。Binding of purified fluorescently labeled SARS-CoV-2 spike protein to these cell lines was quantified by flow cytometry. HeLa and 239T WT cells already had the lowest MFI, followed by Huh7 and VeroE6 cells. 293T ACE2 cells (highest), MRC 5-ACE2-TMPRSS2 (third highest), A549-ACE2-TMPRSS2 clone 5 (fourth highest) and A549-ACE2-TMPRSS2 clone 10 (second highest) had higher MFIs. A correlation analysis between the maximal neutralization potential of S309's spike protein binding was determined; the S309 Spearman correlation value for both virus models was r = -0.94. p=0.017. See Figure 55.
為了進一步表徵SARS-CoV-2敏感性細胞株,使上文所述之七個細胞株與純化的螢光標記之SARS-CoV-2刺突蛋白或RBD蛋白質一起培育,且藉由流式細胞測量術定量蛋白質結合。按MFI之降序,細胞株為:A549-ACE2-TMPRSS2純系10;293T ACE2;MRC 5-ACE2-TMPRSS2;A549-ACE2-TMPRSS2純系5;Vero E6;Huh7;293T (wt);及HeLa。To further characterize SARS-CoV-2 sensitive cell lines, the seven cell lines described above were incubated with purified fluorescently labeled SARS-CoV-2 spike protein or RBD protein and analyzed by flow cytometry Measurements quantify protein binding. In descending order of MFI, the cell lines were: A549-ACE2-
使用經SARS-CoV-2 VSV假病毒轉染之HEK293T細胞篩選所選凝集素及所公開之受體候選物。ACE2、DC-SIGN、L-SIGN及SIGLEC-1得到最高訊號。ACE2提供約105 個相對發光單位(RLU)之訊號,且DC-SIGN、SIGLEC-1及L-SIGN具有約104 個RLU之訊號。所有所測試之其他凝集素/候選物得到約102 - 103 個RLU之訊號。Selected lectins and disclosed receptor candidates were screened using HEK293T cells transfected with SARS-CoV-2 VSV pseudovirus. ACE2, DC-SIGN, L-SIGN and SIGLEC-1 get the highest signal. ACE2 provides signals of about 10 5 relative light emitting units (RLU), and DC-SIGN, SIGLEC-1 and L-SIGN have signals of about 10 4 RLUs. All other lectins/candidates tested gave signals of approximately 102-103 RLUs.
HEK 293T、HeLa及MRC5經短暫轉導以過度表現DC-SIGN、L-SIGN、SIGLEC1或ACE2,且經SARS-CoV-2 VSV假病毒轉染。包括未感染細胞及未經轉導之細胞作為對照。在HEK293T細胞中,ACE2、DC-SIGN、SIGLEC-1及L-SIGN均引起感染之實質性增加。在HeLa及MRC5細胞中,僅ACE2增加感染。
過度表現DC-SIGN、L-SIGN、SIGLEC-1或ACE2之穩定的HEK293T細胞株經可靠的SARS-CoV-2 (MOI 0.1)轉染,固定且在24小時時針對SARS-CoV-2核蛋白進行免疫染色。野生型細胞(感染及未感染)用作對照。在過度表現DC-SIGN、L-SIGN或SIGLEC-1之細胞中觀測到增加之染色,且在過度表現ACE2之細胞中染色顯著增加。Stable HEK293T cell lines overexpressing DC-SIGN, L-SIGN, SIGLEC-1 or ACE2 were reliably transfected with SARS-CoV-2 (MOI 0.1), fixed and targeted for SARS-CoV-2 nucleoprotein at 24 hours Immunostaining was performed. Wild-type cells (infected and uninfected) were used as controls. Increased staining was observed in cells overexpressing DC-SIGN, L-SIGN or SIGLEC-1 and significantly increased in cells overexpressing ACE2.
穩定的細胞株經SARS-CoV-2-Nluc轉染且在24小時時定量螢光素酶位準。按RLU之升序為:未感染(約102
-103
RLU);親體293T (約104
RLU);DC-SIGN (約105
RLU);L-SIGN (約105
RLU);SIGLEC-1 (約105
-106
RLU);ACE2 (>107
RLU)。Stable cell lines were transfected with SARS-CoV-2-Nluc and luciferase levels were quantified at 24 hours. In ascending order of RLU: uninfected (about 10 2 -10 3 RLU);
使穩定的細胞株與不同濃度之抗SIGLEC1 mAb (純系7-239)一起培育且經SARS-CoV-2-Nluc轉染。感染佔未處理細胞之百分比在表現DC-SIGN、L-SIGN或ACE2之293T細胞中保持幾乎超過100%,但在表現SIGLEC-1之293T細胞中降至50%以下(0.2 μg/mL抗-SIGLEC)至將近0 (1 μg/mL或5 μg/mL抗-SIGLEC)。Stable cell lines were incubated with various concentrations of anti-SIGLEC1 mAb (clone 7-239) and transfected with SARS-CoV-2-Nluc. Infection as a percentage of untreated cells remained almost over 100% in 293T cells expressing DC-SIGN, L-SIGN or ACE2, but dropped below 50% in 293T cells expressing SIGLEC-1 (0.2 μg/mL anti- SIGLEC) to nearly 0 (1 μg/mL or 5 μg/mL anti-SIGLEC).
在衍生自人類肺細胞Atlas (nature.com/articles/s41586-020-2922-4)之不同肺細胞類型中確定所選潛在SARS-CoV-2 (共)受體候選物的單一細胞表現位準。以類似於或甚至比ACE2更高的位準在肺中在多種細胞類型中表現DC-SIGN、L-SIGN及SIGLEC-1。Determination of single-cell expression levels of selected potential SARS-CoV-2 (co)receptor candidates in different lung cell types derived from the human lung cell Atlas (nature.com/articles/s41586-020-2922-4) . DC-SIGN, L-SIGN and SIGLEC-1 are expressed in multiple cell types in the lung at similar or even higher levels than ACE2.
藉由流式細胞測量術及免疫螢光分析對在穩定地過度表現對應黏附受體之HEK293T細胞上靶向DC-/L-SIGN、DC-SIGN、SIGLEC1或ACE2之抗體的結合進行分析。過度表現對應的黏附受體之HEK 293T細胞經藉由SARS-CoV-2野生型刺突蛋白或攜載B1.1.7譜系之刺突蛋白假模式化的VSV轉染。感染後一天分析發光。在表現黏附受體之細胞中感染增加。對於各測試組,藉由經刺突蛋白假模式化之VSV的感染為類似的。表現ACE2之細胞得到最高發光訊號。Binding of antibodies targeting DC-/L-SIGN, DC-SIGN, SIGLECl or ACE2 on HEK293T cells stably overexpressing the corresponding adhesion receptors was analyzed by flow cytometry and immunofluorescence analysis.
活體外分化moDC或PBMC之Vero E6細胞經SARS-CoV-2在MOI 0.01下轉染。在感染後24 h,固定細胞,針對病毒核衣殼蛋白進行免疫染色且定量經感染細胞。僅VeroE6細胞表現出感染(約7%細胞)。在24、48及72 h時獲取經感染細胞之上清液且在Vero E6細胞上藉由FFU分析定量感染性病毒效價。In vitro differentiated moDC or PBMC Vero E6 cells were transfected with SARS-CoV-2 at MOI 0.01. At 24 h post infection, cells were fixed, immunostained for viral nucleocapsid proteins and infected cells were quantified. Only VeroE6 cells showed infection (about 7% cells). Infected cell supernatants were taken at 24, 48 and 72 h and infectious virus titers were quantified by FFU analysis on Vero E6 cells.
評定在重度COVID-19患者之支氣管肺泡灌洗液(BALF)及痰中具有可偵測SARS-CoV-2基因體之主要細胞類型。得到t-SNE曲線,且確定各SARS-CoV-2+細胞類型之計數(總n=3,085個細胞,來自8名個體,於Ren等人Cell 2021中)。細胞類型為T、NK、血漿、嗜中性白血球、巨噬細胞、纖毛、鱗狀及分泌性細胞。針對各細胞評定ACE2、DC-SIGN、L-SIGN、SIGLEC-1及此等之組合的表現。圖65-66。The main cell types with detectable SARS-CoV-2 gene bodies were assessed in bronchoalveolar lavage fluid (BALF) and sputum of patients with severe COVID-19. t-SNE curves were obtained and counts were determined for each SARS-CoV-2+ cell type (total n=3,085 cells from 8 individuals in Ren et al. Cell 2021). Cell types were T, NK, plasma, neutrophils, macrophages, cilia, squamous and secretory cells. The performance of ACE2, DC-SIGN, L-SIGN, SIGLEC-1 and combinations of these was assessed for each cell. Figures 65-66.
ACE2、DC-SIGN (CD209)、L-SIGN (CLEC4M)、SIGLEC1轉錄計數與巨噬細胞及分泌細胞中之SARS-CoV-2 RNA計數值相關。相關性基於來自Ren等人Cell 2021之計數(在對數轉換之前)。ACE2, DC-SIGN (CD209), L-SIGN (CLEC4M), SIGLEC1 transcript counts correlated with SARS-CoV-2 RNA counts in macrophages and secretory cells. Correlations are based on counts from Ren et al. Cell 2021 (before log transformation).
展現穩定的HEK293T細胞株中之受體之表現的代表性資料展示於圖41中。Representative data showing the performance of the receptor in the stable HEK293T cell line is shown in FIG. 41 .
使用發光分析評定展現具有螢光素酶報導子之SARS-CoV-2 S蛋白之VSV假病毒感染HEK293T細胞之能力的代表性資料展示於圖42中(亦參見圖57);DC-SIGN或L-SIGN之表現使假病毒感染位準與WT HEK293T細胞之感染相比增加超過10倍,且ACE2之表現使假病毒感染位準與WT HEK293T細胞之感染相比增加超過100倍。Representative data using luminescence assays to assess the ability of a VSV pseudovirus exhibiting the SARS-CoV-2 S protein of the luciferase reporter to infect HEK293T cells is shown in Figure 42 (see also Figure 57); DC-SIGN or L The expression of -SIGN increased the level of pseudovirus infection by more than 10-fold compared to the infection of WT HEK293T cells, and the expression of ACE2 increased the level of pseudovirus infection by more than 100-fold compared to the infection of WT HEK293T cells.
在經工程化HEK293T細胞中評定mAb S309針對VSV假病毒之中和活性。資料展示於圖43中;S309經由DC-SIGN及L-SIGN完全中和感染,且在較低程度下經由ACE2。The neutralizing activity of mAb S309 against VSV pseudovirus was assessed in engineered HEK293T cells. Data are shown in Figure 43; S309 completely neutralized infection via DC-SIGN and L-SIGN, and to a lesser extent via ACE2.
活SARS-CoV-2使用螢光素酶報導子感染HEK293T細胞之能力係使用發光分析檢測。資料展示於圖44中;DC-SIGN或L-SIGN之表現使活病毒感染位準與WT HEK293T細胞之感染相比增加超過3倍,且ACE2之表現使活病毒感染位準與WT HEK293T細胞之感染相比增加超過100倍。亦參見圖58,表明如由針對SARS-CoV-2核蛋白之染色確定感染。The ability of live SARS-CoV-2 to infect HEK293T cells using the luciferase reporter was detected using a luminescence assay. The data are shown in Figure 44; expression of DC-SIGN or L-SIGN increased the level of live virus infection more than 3-fold compared to infection of WT HEK293T cells, and expression of ACE2 increased the level of live virus infection to that of WT HEK293T cells. Infections increased more than 100-fold compared to See also Figure 58, showing infection as determined by staining for SARS-CoV-2 nucleoprotein.
在經工程化HEK293T細胞中評定S309針對VSV假病毒之中和活性。資料展示於圖45中;S309經由DC-SIGN及L-SIGN完全中和感染,且經由ACE2在較低程度下中和感染。The neutralizing activity of S309 against VSV pseudovirus was assessed in engineered HEK293T cells. Data are shown in Figure 45; S309 completely neutralized infection via DC-SIGN and L-SIGN, and to a lesser extent via ACE2.
進行實驗以研究S309或S2E12抗體是否可經由SIGLEC-1中和SARS-CoV-2進入。在以下實驗中,S309抗體(SEQ ID NO.:139之VH,SEQ ID NO.:143之VL)及S2E12抗體(SEQ ID NO.:399之VH,SEQ ID NO.:403之VL)表示為具有M428L及N434S突變之重組IgG1。簡言之,如上文所述產生穩定的細胞HEK293T株以過度表現DC-SIGN/L-SIGN、DC-SIGN、SIGLEC-1或ACE2。表現資料展示於圖46中。如圖47中所示,DC-SIGN、L-SIGN或SIGLEC之表現使活病毒感染位準與WT HEK293T細胞之感染相比增加超過10倍,且ACE2之表現使假病毒感染位準與WT HEK293T細胞之感染相比增加超過100倍。如圖48中所示,S309經由DC-SIGN、L-SIGN及SIGLEC-1完全中和感染。如圖49中所示,S2E12經由SIGLEC-1及ACE2完全中和感染。Experiments were performed to investigate whether S309 or S2E12 antibodies could neutralize SARS-CoV-2 entry via SIGLEC-1. In the following experiments, the S309 antibody (VH of SEQ ID NO.:139, VL of SEQ ID NO.:143) and S2E12 antibody (VH of SEQ ID NO.:399, VL of SEQ ID NO.:403) are represented as Recombinant IgG1 with M428L and N434S mutations. Briefly, a stable HEK293T strain of cells was generated as described above to overexpress DC-SIGN/L-SIGN, DC-SIGN, SIGLEC-1 or ACE2. Performance data is shown in Figure 46. As shown in Figure 47, expression of DC-SIGN, L-SIGN or SIGLEC increased live virus infection levels more than 10-fold compared to infection of WT HEK293T cells, and expression of ACE2 increased pseudovirus infection levels compared to WT HEK293T cells infection was increased by more than 100 times. As shown in Figure 48, S309 completely neutralized infection via DC-SIGN, L-SIGN and SIGLEC-1. As shown in Figure 49, S2E12 completely neutralized infection via SIGLEC-1 and ACE2.
在多種細胞類型上確定DC-SIGN (CD209)及包括SIGLEC-1及其他SIGLEC之其他細胞表面受體蛋白質的表現。資料概述於圖50A及50B中。Expression of DC-SIGN (CD209) and other cell surface receptor proteins including SIGLEC-1 and other SIGLECs was determined on various cell types. The data are summarized in Figures 50A and 50B.
進行其他實驗以研究DC-SIGN、L-SIGN及SIGLEC-1在SARS-CoV-2感染中之功能。在一組實驗中,穩定地表現DC-SIGN、L-SIGN、SIGLEC-1或ACE2之HEK293T細胞以三種不同感染倍率(MOI:0.01、0.1及1)經活SARS-CoV-2 Nluc轉染。使用相對發光單元確定感染且與HEK293T細胞(親體)中之感染進行比較。資料展示於圖51中。在所測試之最低MOI下,在DC-SIGN、L-SIGN或SIGLEC中觀測到感染增加。在所測試之最高MOI下,相較於親體,感染未藉由DC-SIGN、L-SIGN或SIGLEC之表現進一步增加。此等資料指示,親體293T細胞對SARS-CoV-2引起之感染敏感,且L-SIGN、DC-SIGN及SIGLEC-1增加感染位準但不充當用於感染之主要受體。Additional experiments were performed to investigate the function of DC-SIGN, L-SIGN and SIGLEC-1 in SARS-CoV-2 infection. In one set of experiments, HEK293T cells stably expressing DC-SIGN, L-SIGN, SIGLEC-1 or ACE2 were transfected with live SARS-CoV-2 Nluc at three different infection folds (MOI: 0.01, 0.1 and 1). Infection was determined using relative luminescence cells and compared to infection in HEK293T cells (parent). The data are shown in Figure 51. At the lowest MOI tested, an increase in infection was observed in DC-SIGN, L-SIGN or SIGLEC. At the highest MOI tested, infection was not further increased by expression of DC-SIGN, L-SIGN or SIGLEC compared to parent. These data indicate that parental 293T cells are susceptible to infection by SARS-CoV-2 and that L-SIGN, DC-SIGN and SIGLEC-1 increase the level of infection but do not act as primary receptors for infection.
在另一組實驗中,293T細胞、HeLa細胞及MRC5細胞經編碼DC-SIGN、L-SIGN、SIGLEC-1或ACE2之慢病毒短暫轉導且在轉導之後三天經VSV假病毒轉染。資料展示於圖52中。293T細胞表現出易感性之較低位準(比較未感染與未經轉導),而HeLa及MRC5細胞則完全對病毒具有抵抗性。293T細胞中之較低感染位準可藉由L-SIGN、DC-SIGN或SIGLEC-1之表現而增加,與此等蛋白質作為黏附因子之作用一致。HeLa及MRC5細胞甚至在L-SIGN、DC-SIGN或SIGLEC-1之表現之後仍對感染具有抵抗性,且僅在ACE2之表現之後變為易感。此等資料指示,L-SIGN、DC-SIGN及SIGLEC-1不為SARS-CoV-2之主要受體。In another set of experiments, 293T cells, HeLa cells and MRC5 cells were transiently transduced with lentivirus encoding DC-SIGN, L-SIGN, SIGLEC-1 or ACE2 and transfected with VSV pseudovirus three days after transduction. The data are shown in Figure 52. 293T cells showed lower levels of susceptibility (compare uninfected versus untransduced), while HeLa and MRC5 cells were completely resistant to the virus. Lower infection levels in 293T cells could be increased by the expression of L-SIGN, DC-SIGN or SIGLEC-1, consistent with the role of these proteins as adhesion factors. HeLa and MRC5 cells remained resistant to infection even after expression of L-SIGN, DC-SIGN or SIGLEC-1 and became susceptible only after expression of ACE2. These data indicate that L-SIGN, DC-SIGN and SIGLEC-1 are not the primary receptors for SARS-CoV-2.
進行反感染、細胞-細胞融合及感染之進一步中和分析。圖71展示使用抗體S309、S2E12及S2X333在Vero E6細胞上之中和。圖72展示使用相同抗體在Vero E6-TMPRSS2細胞上之中和。圖75及76展示在各種細胞類型上藉由此等抗體之感染的中和。圖77-80展示來自細胞-細胞融合及融合抑制分析之結果。圖81-84展示在過度表現ACE2、SIGLEC1、DC-SIGN或L-SIGN之穩定的HEK293T細胞株上藉由抗體之感染的中和。實例15 S309 抗體及 S309 與 S2E12 抗體之組合的活體內功效 Further neutralization assays for counter-infection, cell-cell fusion and infection were performed. Figure 71 shows neutralization on Vero E6 cells using antibodies S309, S2E12 and S2X333. Figure 72 shows neutralization on Vero E6-TMPRSS2 cells using the same antibodies. Figures 75 and 76 show neutralization of infection by these antibodies on various cell types. Figures 77-80 show results from cell-cell fusion and fusion inhibition assays. Figures 81-84 show neutralization by infection with antibodies on stable HEK293T cell lines overexpressing ACE2, SIGLECl, DC-SIGN or L-SIGN. Example 15 In vivo efficacy of S309 antibody and combinations of S309 and S2E12 antibodies
在敘利亞倉鼠中研究S309及S309與S2E12之組合的有效性。此動物模型表示迄今為止SARS-CoV-2感染之最相關模型,其不需要ACE2之活體內過度表現以支持產毒性感染及疾病。預防性投予S309誘導針對在倉鼠中SARS-CoV-2感染及組織損害之劑量依賴性保護,如藉由肺中之病毒RNA位準、病毒負荷及組織病理學評分所表明(圖56A,左欄)。此等資料指示,當使用ACE2過度表現細胞時藉由S309活體外進入之不良及不完全中和不會危害非RBM mAb之活體內功效。使用S309與S2E12抗體之組合得到類似結果(圖56A,右欄)。The efficacy of S309 and the combination of S309 and S2E12 was studied in Syrian hamsters. This animal model represents the most relevant model of SARS-CoV-2 infection to date that does not require in vivo overexpression of ACE2 to support toxigenic infection and disease. Prophylactic administration of S309 induced dose-dependent protection against SARS-CoV-2 infection and tissue damage in hamsters, as indicated by viral RNA levels, viral load, and histopathological scores in the lungs (Figure 56A, left column). These data indicate that poor and incomplete neutralization of in vitro entry by S309 does not compromise the in vivo efficacy of non-RBM mAbs when using ACE2 overexpressing cells. Similar results were obtained using the combination of S309 and S2E12 antibodies (FIG. 56A, right column).
攜載N297A突變之S309由於與Fcγ受體之接合減弱而具有降低之觸發效應功能的能力。此藉由在脾臟中S309-N297A變異體與倉鼠單核細胞的結合降低進一步確認。用N297A mAb量測之活體內有效性與wt S309類似或僅略遜於其,此表明在此等條件下mAb之中和能力勝於其效應功能能力。使肺中之病毒RNA降低90%所需的S309之血清濃度為9 µg/ml (圖56B,左欄)。使用S309與S2E12抗體之組合得到類似結果(圖56B,右欄)。實例16 使用 S2E12 - v2 抗體之進一步活體內研究 S309 carrying the N297A mutation has a reduced ability to trigger effector functions due to reduced engagement with Fcγ receptors. This was further confirmed by the reduced binding of the S309-N297A variant to hamster monocytes in the spleen. The in vivo efficacy measured with the N297A mAb was similar or only slightly inferior to that of wt S309, indicating that the neutralizing ability of the mAb outperformed its effector function under these conditions. The serum concentration of S309 required to reduce viral RNA in the lung by 90% was 9 µg/ml (Figure 56B, left column). Similar results were obtained using the combination of S309 and S2E12 antibodies (FIG. 56B, right column). Example 16 Further in vivo studies using the S2E12 - v2 antibody
使用非人類靈長類動物進行臨床前研究以評定具有SEQ ID NO:399之VH胺基酸序列及SEQ ID NO:738之VL胺基酸序列且包含M428L及N434S Fc突變之S2E12-v2 (圖99中展示為「S2E12」)的藥物動力學及潛在組織交叉反應安全性。如圖99及100中所示,單一5 mg/kg劑量之S2E12-v2 MLNS的平均T1/2 為25.4天(3個動物之間)。組織交叉反應研究(使用CHO-CoV2-S刺突蛋白,以1:1之CHO-CoV2S-刺突蛋白:CHO,及CHO作為對照)在1.25、0.3125或0.078125 μg/ml下未鑑別出任何組織中之藉由S2E12-v2的交叉反應染色。實例17 進一步中和研究 Preclinical studies were performed using non-human primates to assess S2E12-v2 having the VH amino acid sequence of SEQ ID NO: 399 and the VL amino acid sequence of SEQ ID NO: 738 and comprising M428L and N434S Fc mutations (Fig. 99 as "S2E12") pharmacokinetics and potential tissue cross-reactivity safety. As shown in Figures 99 and 100, the mean T 1/2 for S2E12-v2 MLNS at a single 5 mg/kg dose was 25.4 days (between 3 animals). Tissue cross-reactivity studies (using CHO-CoV2-S Spike, 1:1 CHO-CoV2S-Spike:CHO, and CHO as controls) did not identify any tissues at 1.25, 0.3125, or 0.078125 μg/ml Among them were cross-reactive staining by S2E12-v2. Example 17 Further neutralization studies
研究已知SARS-CoV-2突變對S2E12之中和效能的潛在作用。SARS-CoV-2 S中之以下個別突變在針對活SARS-CoV-2或SARS-CoV-2假病毒之S2E12的中和上具有低於3倍之降低:N501Y;S477N;N439K;L452R;E484K;K417N;T478K;S494P;A520S;N501T;A522S;Y453F;P384L。實例18 材料及方法 針對結合至表現於哺乳動物細胞上之 CoV S 蛋白的基於流動式細胞測量術之篩選 To investigate the potential effect of known SARS-CoV-2 mutations on S2E12 neutralization efficacy. The following individual mutations in SARS-CoV-2 S have less than 3-fold reduction in neutralization of S2E12 against live SARS-CoV-2 or SARS-CoV-2 pseudovirus: N501Y; S477N; N439K; L452R; E484K ; K417N; T478K; S494P; A520S; N501T; A522S; Y453F; P384L. Example 18 Materials and Methods Flow Cytometry-Based Screening for Binding to CoV S Protein Expressed on Mammalian Cells
ExpiCHO細胞經SARS-CoV-2之S蛋白轉染。隨後藉由流動式細胞測量術在10 µg/ml下測試單株抗體對表現SARS-CoV-2轉染物之S蛋白的ExpiCHO細胞染色的能力。重組 SARS-CoV-2 蛋白質之暫時表現 ExpiCHO cells were transfected with the S protein of SARS-CoV-2. The monoclonal antibodies were then tested by flow cytometry at 10 µg/ml for their ability to stain ExpiCHO cells expressing the S protein of SARS-CoV-2 transfectants. Temporary performance of recombinant SARS-CoV-2 protein
針對人類細胞表現使SARS-CoV-2菌株(2019-nCoV-S)分離株βCoV/武漢-Hu-1/2019之全長S基因(寄存編號MN908947)經密碼子最佳化,且選殖至phCMV1表現載體(Genlantis)中。使用Expifectamine CHO增強子將Expi-CHO細胞經phCMV1-SARS-CoV-2-S、phCMV1-MERS-CoV-S (London1/2012)、SARS-刺突蛋白_pcDNA.3 (菌株SARS)或空phCMV1 (Mock)暫時地轉染。在轉染後二天,收集細胞,固定,或用皂素固定及預滲透以便用對SARS-CoV受體結合域(RBD)具有反應性之一組單株抗體進行免疫染色。經Alexa647標記之二級抗體抗人類IgG Fc用於偵測。使用ZE5細胞分析儀(Biorard)及FlowJo軟體(TreeStar)藉由流式細胞測量術分析抗體與經轉染的細胞之結合。陽性結合由CoV-S-轉染物相對於模擬物-轉染物之差異性染色來定義。使用 Octet (BLI ,生物層干涉法 ) 之競爭實驗 The full-length S gene (Accession No. MN908947) of the SARS-CoV-2 strain (2019-nCoV-S) isolate βCoV/Wuhan-Hu-1/2019 was codon-optimized for human cell performance and cloned into phCMV1 expression vector (Genlantis). Expi-CHO cells were transfected with phCMV1-SARS-CoV-2-S, phCMV1-MERS-CoV-S (London1/2012), SARS-Spike_pcDNA.3 (strain SARS) or empty phCMV1 using the Expifectamine CHO enhancer (Mock) transiently transfected. Two days after transfection, cells were harvested, fixed, or fixed with saponin and pre-infiltrated for immunostaining with a panel of monoclonal antibodies reactive against the SARS-CoV receptor binding domain (RBD). Alexa647-labeled secondary antibody anti-human IgG Fc was used for detection. Antibody binding to transfected cells was analyzed by flow cytometry using a ZE5 cell analyzer (Biorard) and FlowJo software (TreeStar). Positive binding was defined by differential staining of CoV-S-transfectants relative to mock-transfectants. Competition experiments using Octet (BLI , Biolayer Interferometry )
除非本文中另外規定,否則使用抗His感測器(BIOSENSOR ANTI-PENTA-HIS (HIS1K))來固化SARS-CoV之S1次單位蛋白質(Sino Biological Europe GmbH)。用動力學緩衝液(KB;0.01%無內毒素BSA,0.002 Tween-20,0.005% NaN3於PBS中)使感測器水合10 min。隨後使SARS-CoV S1次單位蛋白質以10 µg/ml之濃度在KB中負載8 min。針對全長mAbs nCoV-10及nCov-6 mAbs使抗體在15 µg/ml下,或針對Fab nCoV-4在5 µg/ml下締合6 min,且在包含在10 µg/ml下之nCoV-1所有的連續實驗中。隨後使競爭抗體在相同濃度下締合再6 min。使用 Octet (BLI ,生物層干涉法 ) 之競爭實驗 Unless otherwise specified herein, an anti-His sensor (BIOSENSOR ANTI-PENTA-HIS (HIS1K)) was used to immobilize the S1 subunit protein of SARS-CoV (Sino Biological Europe GmbH). The sensor was hydrated with kinetic buffer (KB; 0.01% endotoxin-free BSA, 0.002 Tween-20, 0.005% NaN3 in PBS) for 10 min. The SARS-CoV S1 subunit protein was then loaded in KB at a concentration of 10 µg/ml for 8 min. Antibodies were associated at 15 µg/ml for full-length mAbs nCoV-10 and nCov-6 mAbs, or 5 µg/ml for Fab nCoV-4 for 6 min, and nCoV-1 contained at 10 µg/ml in all consecutive experiments. Competing antibodies were then allowed to associate at the same concentration for a further 6 min. Competition experiments using Octet (BLI , Biolayer Interferometry )
對於ACE2競爭實驗,使ACE2-His (Bio-Techne AG)以5 µg/ml在KB中負載到抗-HIS (HIS2)生物感測器(Molecular Devices-ForteBio)上30分鐘。在使用或不使用抗體預培育之後(30 µg/ml,30分鐘),使SARS-CoV-1 RBD-兔Fc或SARS-CoV-2 RBD-小鼠Fc (Sino Biological Europe GmbH)在1 µg/ml下締合15分鐘。監測解離持續5分鐘。使用 Octet (BLI ,生物層干涉法 ) 之親和力確定 For ACE2 competition experiments, ACE2-His (Bio-Techne AG) was loaded onto an anti-HIS (HIS2) biosensor (Molecular Devices-ForteBio) at 5 μg/ml in KB for 30 minutes. SARS-CoV-1 RBD-rabbit Fc or SARS-CoV-2 RBD-mouse Fc (Sino Biological Europe GmbH) was incubated at 1 µg/ml after preincubation with or without antibody (30 µg/ml, 30 min). 15 minutes of association under ml. Dissociation was monitored for 5 minutes. Affinity determination using Octet (BLI , Biolayer Interferometry )
對於全長抗體之KD確定,在用動力學緩衝液進行水合步驟10分鐘之後,使用蛋白質A生物感測器(Pall ForteBio)在2.7 μg/ml下固化重組抗體持續1分鐘。藉由用不同濃度之SARS-CoV-1 RBD (Sino Biological)或SARS-CoV-2 RBD (內部產生;來自βCoV/武漢-Hu-1/2019之刺突蛋白的殘基331-550,寄存編號MN908947)培育經抗體塗佈之感測器來記錄締合曲線5分鐘。所測試之最高RBD濃度為10 ug/ml,隨後1:2.5連續稀釋。藉由將感測器移動至含有KB之孔來記錄解離9分鐘。使用整體擬合模型(Octet)計算KD值。使用Octet Red96 (ForteBio)設備。For KD determination of full-length antibodies, recombinant antibodies were immobilized at 2.7 μg/ml for 1 min using a protein A biosensor (Pall ForteBio) following a 10 min hydration step with kinetic buffer. By using different concentrations of SARS-CoV-1 RBD (Sino Biological) or SARS-CoV-2 RBD (in-house generated; residues 331-550 of the spike protein from βCoV/Wuhan-Hu-1/2019, accession number MN908947) incubate the antibody-coated sensor to record the association curve for 5 minutes. The highest RBD concentration tested was 10 ug/ml followed by a 1:2.5 serial dilution. Dissociation was recorded for 9 minutes by moving the sensor to the well containing the KB. KD values were calculated using an overall fitted model (Octet). Octet Red96 (ForteBio) equipment was used.
對於全長抗體與Fab片段相比之KD 確定,使SARS-CoV-1或SARS-CoV-2之HIS標記之RBD在3 µg/ml下在KB中負載到抗-HIS (HIS2)生物感測器(Molecular Devices,ForteBio)上15分鐘。分別以15 ug/mL及5 ug/mL在KB中進行全長抗體與Fab之締合5分鐘。量測KB中之解離10分鐘。ELISA 結合 For KD determination of full-length antibodies compared to Fab fragments, HIS-tagged RBDs of SARS-CoV-1 or SARS-CoV-2 were loaded in KB at 3 µg/ml for anti-HIS (HIS2) biosensing device (Molecular Devices, ForteBio) for 15 minutes. Association of full-length antibody to Fab was performed in KB at 15 ug/mL and 5 ug/mL, respectively, for 5 minutes. Dissociation in KB was measured for 10 minutes. ELISA binding
藉由酶聯免疫吸附分析(ELISA)確定mAb與SARS-CoV-2刺突蛋白S1次單位蛋白質(菌株WH20)蛋白質之反應性。簡言之,96孔盤用3 µg/ml重組SARS-CoV-2刺突蛋白S1次單位蛋白質(Sino. Biological)塗佈。洗滌各孔,且在室溫下用PBS+1%BSA阻斷1小時,且隨後用連續稀釋的mAb在室溫下培育1小時。藉由在室溫下培育經鹼性磷酸酶共軛之山羊抗人類IgG (Southern Biotechnology:2040-04)1小時來偵測結合的mAb,且藉由含1 mg/ml對硝基苯磷酸受質之0.1 M甘胺酸緩衝液(pH 10.4)在室溫下顯影30分鐘。在ELISA讀取器(Powerwave 340/96分光光度計,BioTek)中量測在405 nm之波長下之光學密度(OD)值。中和分析 The reactivity of mAbs with the SARS-CoV-2 spike S1 subunit protein (strain WH20) protein was determined by enzyme-linked immunosorbent assay (ELISA). Briefly, 96-well plates were coated with 3 µg/ml recombinant SARS-CoV-2 spike protein S1 subunit protein (Sino. Biological). Wells were washed and blocked with PBS + 1% BSA for 1 hour at room temperature and then incubated with serially diluted mAbs for 1 hour at room temperature. Bound mAbs were detected by incubating alkaline phosphatase-conjugated goat anti-human IgG (Southern Biotechnology: 2040-04) for 1 hr at room temperature, and were assayed with 1 mg/ml p-nitrophenyl phosphate. Development was performed in 0.1 M glycine buffer (pH 10.4) at room temperature for 30 minutes. Optical density (OD) values were measured at a wavelength of 405 nm in an ELISA reader (Powerwave 340/96 spectrophotometer, BioTek). Neutralization Analysis
除非另外規定,否則使用經SARS-CoV-2刺突蛋白(SARS-CoV-2pp)或SARS-CoV-1刺突蛋白(SARS-CoV-1pp)假模式化之鼠白血病病毒(MLV)。將經ACE2 (DBT-ACE2)穩定轉染之DBT細胞用作目標細胞。SARS-CoV-2pp或SARS-CoV-1pp用胰蛋白酶TPCK以10 ug/ml活化。將活化的SARS-CoV-2pp或SARS-CoV-1pp添加至抗體之連續稀釋液中(以50 ug/ml最終濃度/抗體開始,3倍稀釋)。將DBT-ACE2細胞添加至該抗體-病毒混合物中,且培育48小時。在抽吸細胞培養物上清液且添加穩定-GLO受質(Promega)之後量測發光。Murine leukemia virus (MLV) pseudopatterned with SARS-CoV-2 spike protein (SARS-CoV-2pp) or SARS-CoV-1 spike protein (SARS-CoV-1pp) was used unless otherwise specified. DBT cells stably transfected with ACE2 (DBT-ACE2) were used as target cells. SARS-CoV-2pp or SARS-CoV-1pp were activated with trypsin TPCK at 10 ug/ml. Activated SARS-CoV-2pp or SARS-CoV-1pp was added to serial dilutions of antibodies (starting at 50 ug/ml final concentration/antibody, 3-fold dilution). DBT-ACE2 cells were added to the antibody-virus mixture and incubated for 48 hours. Luminescence was measured after aspiration of cell culture supernatant and addition of stable-GLO substrate (Promega).
除非另外規定,否則偽粒子中和分析使用基於VSV之螢光素酶報導基因假模式化系統(Kerafast)。VSV偽粒子及抗體在DMEM中混合且使其在37℃下培育30分鐘。隨後使感染混合物與Vero E6細胞一起在37℃下培育1 h,隨後添加具有青黴素-鏈黴素及10%FBS之DMEM (未移除感染混合物)。使細胞在37℃下培育18-24小時。在添加Bio-Glo試劑(普洛麥格)之後使用Ensight盤讀取器(Perkin Elmer)來量測螢光素酶。SPR 單循環動力學 Unless otherwise specified, pseudoparticle neutralization assays used the VSV-based luciferase reporter pseudo-patterning system (Kerafast). VSV pseudoparticles and antibodies were mixed in DMEM and allowed to incubate at 37°C for 30 minutes. The infection mixture was then incubated with Vero E6 cells for 1 h at 37°C, followed by the addition of DMEM with penicillin-streptomycin and 10% FBS (infection mixture was not removed). Cells were incubated at 37°C for 18-24 hours. Luciferase was measured using an Ensight disc reader (Perkin Elmer) after addition of Bio-Glo reagent (Promega). SPR Single Cycle Kinetics
使用單循環動力學方法用Biacore T200儀器進行SPR實驗。在表面上俘獲S309 IgG,且注射濃度增加之經醣基化或經去醣基化的經純化SARS-CoV-2 RBD。監測締合及解離動力學,且擬合至結合模型,以確定親和力。重組抗體之表現 重組抗體表現於如先前所述之經表現重鏈及輕鏈之質體暫時地共轉染的ExpiCHO細胞中。(Stettler等人(2016) Specificity, cross-reactivity, and function of antibodies elicited by Zika virus infection. Science, 353(6301), 823-826)。單株抗體S303、S304、S306、S309、S310及S315表示為rIgG-LS抗體。LS突變賦予活體內更長的半衰期。(Zalevsky等人(2010) Enhanced antibody half-life improves in vivo activity. Nature Biotechnology, 28(2), 157-159)序列比對 SPR experiments were performed with a Biacore T200 instrument using the single-cycle kinetic method. S309 IgG was captured on the surface and increasing concentrations of glycosylated or deglycosylated purified SARS-CoV-2 RBD were injected. Association and dissociation kinetics were monitored and fitted to binding models to determine affinity. Expression of recombinant antibodies Recombinant antibodies were expressed in ExpiCHO cells transiently co-transfected with plastids expressing heavy and light chains as previously described. (Stettler et al. (2016) Specificity, cross-reactivity, and function of antibodies elicited by Zika virus infection. Science, 353(6301), 823-826). Monoclonal antibodies S303, S304, S306, S309, S310 and S315 are denoted as rIgG-LS antibodies. LS mutations confer a longer half-life in vivo. (Zalevsky et al. (2010) Enhanced antibody half-life improves in vivo activity. Nature Biotechnology, 28(2), 157-159) Sequence alignment
SARS-CoV-2基因體學序列自2020年三月29日上之GISAID下載,使用「完全(>29,000 bp)」及「較低覆蓋率排除過濾器」。移除蝙蝠及穿山甲序列,得到僅人類序列。藉由用GeneWise2進行參考蛋白質(YP_009724390.1)-基因體比對來定位刺突蛋白ORF。救助不完全匹配及含插入或缺失之ORF且包括於下游分析中。使用seqkit電子雜交轉譯核苷酸序列。移除具有超過10%未確定胺基酸(由於N個鹼基響應)之序列。使用MAFFT進行多序列比對。藉由使用R/Bioconductor封裝Biostrings比較比對序列(n=2,229)與參考序列來確定變異體。使用類似策略以自來源於ViPR之SARS-CoV基因體提取及轉譯刺突蛋白序列(檢索準則:SARS相關冠狀病毒,全長基因體,人類宿主,在2019年十二月之前寄存以排除SARS-CoV-2,n=53)。來源的SARS-CoV基因體序列包含所有主要公開之菌株,諸如Urbani、Tor2、TW1、P2、Frankfurt1以及其他。如Tsan-Yuk Lam等人所示之穿山甲序列來源於GISAID。如Lu等人(Lancet 2020)所示之來自薩貝冠狀病毒之三個分枝系的蝙蝠序列來源於Genbank。麝貓及浣熊市犬序列類似地來源於Genbank。產生穩定的過度表現細胞株 The SARS-CoV-2 genomic sequence was downloaded from GISAID on March 29, 2020, using the "complete (>29,000 bp)" and "lower coverage exclusion filters". Remove bat and pangolin sequences to get human-only sequences. The spike protein ORF was mapped by reference protein (YP_009724390.1)-gene body alignment with GeneWise2. Incomplete matches and ORFs containing insertions or deletions were rescued and included in downstream analyses. Nucleotide sequences were translated using seqkit electronic hybridization. Sequences with more than 10% unidentified amino acids (due to N base calls) were removed. Multiple sequence alignments were performed using MAFFT. Variants were determined by comparing aligned sequences (n=2,229) to a reference sequence using R/Bioconductor packaged Biostrings. A similar strategy was used to extract and translate the spike protein sequence from the SARS-CoV genome derived from ViPR (search criteria: SARS-associated coronavirus, full-length genome, human host, deposited before December 2019 to exclude SARS-CoV -2, n=53). The source SARS-CoV genome sequence includes all major published strains such as Urbani, Tor2, TW1, P2, Frankfurt1 and others. The pangolin sequence as shown by Tsan-Yuk Lam et al. was derived from GISAID. The bat sequences from three clades of Sabei coronavirus as shown by Lu et al. (Lancet 2020) were derived from Genbank. Civet and raccoon dog sequences were similarly derived from Genbank. Generation of stable overexpressing cell lines
藉由用編碼DC-SIGN (CD209)、L-SIGN (CLEC4M)、SIGLEC1、TMPRSS2或ACE2 (所有自Genecopoeia獲得)之慢病毒表現質體及對應的慢病毒輔助質體共轉染Lenti-X 293T細胞(Takara)來產生慢病毒。轉染後四十八小時,收穫上清液中之慢病毒且藉由在20,000 rpm下超速離心2 h濃縮。在6 ug/mL凝聚胺(Millipore)存在下使Lenti-X 293T (Takara)、Vero E6 (ATCC)、MRC5 (Sigma-Aldrich)、A549 (ATCC)轉導24小時。隨後轉導過度表現二個轉殖基因之細胞株。在轉導之後二天開始用嘌呤黴素及/或殺稻瘟菌素(Gibco)之選擇且使選擇試劑保持在生長介質中以用於所有後續培養。單一細胞純系衍生自A549-ACE2-TMPRSS2細胞株,所有其他細胞株表示細胞池。SARS - CoV - 2 中和 Lenti-
使在補充有10% FBS (VWR)及1x青黴素/鏈黴素(Thermo Fisher Scientific)之DMEM中培養之Vero E6或Vero E6-TMPRSS2細胞在20,000個細胞/孔下接種於黑色96孔盤中。在37℃下在BSL-3設施中使單株抗體之連續1:4稀釋液與200 pfu之SARS-CoV-2 (分離株USA-WA1/2020,繼代3,在Vero E6細胞中繼代)一起培育30分鐘。移除細胞上清液且將病毒-抗體混合物添加至細胞中。24小時感染後,用4%多聚甲醛固定細胞30分鐘,接著二個PBS (pH 7.4)洗滌,且用含0.25% Triton X-100之PBS滲透30分鐘。在5%奶粉/PBS中阻斷30分鐘之後,將細胞與靶向SARS-CoV-2核衣殼蛋白(Sino Biological,cat. 40143-R001)之一級抗體在1:2000稀釋下一起培育1小時。在洗滌且與與1 μg/ml Hoechst33342混合之二級經Alexa647標記之抗體一起培育1小時之後,使盤在自動細胞成像讀取器上(Cytation 5,Biotek)成像,且使用製造商提供的軟體對核衣殼-陽性細胞進行計數。SARS - CoV - 2 - Nluc 中和 Vero E6 or Vero E6-TMPRSS2 cells cultured in DMEM supplemented with 10% FBS (VWR) and 1x penicillin/streptomycin (Thermo Fisher Scientific) were seeded in black 96-well dishes at 20,000 cells/well. Serial 1:4 dilutions of monoclonal antibodies were combined with 200 pfu of SARS-CoV-2 (isolate USA-WA1/2020,
中和使用SARS-CoV-2-Nluc,一種編碼奈米螢光素酶而非病毒ORF7之SARS-CoV-2 (基於菌株2019-nCoV/USA_WA1/2020)的感染性純系確定,其表明出可與野生型病毒相當的生長動力學(Xie等人, Nat Comm, 2020, https://doi.org/10.1038/s41467-020-19055-7)。使細胞以20,000個細胞/孔接種至黑色外壁、透明底的96孔盤中(293T細胞以35,000個細胞/孔接種至經聚-L-離胺酸塗佈之孔中)且在37℃下培養隔夜。次日,在感染培養基(DMEM + 10% FBS)中製備抗體之9點4倍連續稀釋液。將SARS-CoV-2-Nluc以指定MOI稀釋於感染培養基中,添加至抗體稀釋液且在37℃下培育30 min。自細胞中移除培養基,添加mAb-病毒複合物,且在37℃下培育細胞24小時。自細胞中移除培養基,根據製造商的建議添加奈米-Glo螢光素酶受質(Promega),在室溫下培育10 min,且在VICTOR Nivo盤讀取器(Perkin Elmer)上定量螢光素酶訊號。SARS-CoV-2 假模式化 VSV 產生及中和 Neutralization was determined using an infectious clone of SARS-CoV-2-Nluc, an infectious clone of SARS-CoV-2 (based on strain 2019-nCoV/USA_WA1/2020) encoding nanoluciferase but not viral ORF7, which showed that Growth kinetics comparable to wild-type virus (Xie et al., Nat Comm, 2020, https://doi.org/10.1038/s41467-020-19055-7). Cells were seeded at 20,000 cells/well into black-walled, clear-bottomed 96-well dishes (293T cells were seeded at 35,000 cells/well into poly-L-lysine-coated wells) and incubated at 37°C Incubate overnight. The next day, 9 point 4-fold serial dilutions of the antibody were prepared in infection medium (DMEM + 10% FBS). SARS-CoV-2-Nluc was diluted in infection medium at the indicated MOI, added to antibody dilution and incubated at 37°C for 30 min. Media was removed from cells, mAb-virus complexes were added, and cells were incubated at 37°C for 24 hours. Media was removed from cells, Nano-Glo luciferase substrate (Promega) was added according to the manufacturer's recommendations, incubated for 10 min at room temperature, and fluorescence was quantified on a VICTOR Nivo disc reader (Perkin Elmer) luciferase signal. SARS-CoV-2 pseudopatterned VSV production and neutralization
為了產生SARS-CoV-2假模式化水泡性口炎病毒,使Lenti-X 293T細胞(Takara)接種於10-cm培養皿中,直至80%次日匯合。次日,根據製造商說明書使用TransIT-Lenti (Mirus Bio)使細胞經編碼含有C端19 aa截斷之SARS-CoV-2 S-醣蛋白(YP_009724390.1)的質體轉染。轉染後一天,使細胞以3個感染性單位/細胞之MOI經VSV(G*ΔG-螢光素酶) (Kerafast)感染。在一小時之後洗去病毒接種物且在37℃下再培育細胞一天。在轉染後第2天收集含有SARS-CoV-2假模式化VSV之細胞上清液,在1000 x g下離心5分鐘,以移除細胞碎片,等分且在80℃下冷凍。To generate SARS-CoV-2 pseudopatterned vesicular stomatitis virus, Lenti-
對於病毒中和,使細胞以20,000個細胞/孔接種至黑色外壁、透明底的96孔盤中(293T細胞以35,000個細胞/孔接種至經聚-L-離胺酸塗佈之孔中)且在37℃下培養隔夜。次日,在培養基中製備抗體之9點4倍連續稀釋液。SARS-CoV-2假模式化VSV在100 ng/mL抗VSV-G抗體(純系8G5F11,絕對抗體)存在下在培養基中以1:30稀釋,且1:1添加至各抗體稀釋液中。病毒:抗體混合物在37℃下培育1小時。自細胞中移除培養基且將50 μL病毒:抗體混合物添加至細胞中。感染後一小時,將100 μL培養基添加至所有孔中且在37℃下培育17-20小時。移除培養基且將50 μL Bio-Glo試劑(Promega)添加至各孔中。在室溫下使盤在盤振盪器上在300 RPM下振盪15分鐘,且在EnSight盤讀取器(Perkin-Elmer)上讀取RLU。基於轉染之黏附受體篩選 For virus neutralization, cells were seeded at 20,000 cells/well into black-walled, clear-bottomed 96-well dishes (293T cells were seeded at 35,000 cells/well into poly-L-lysine-coated wells) and incubated overnight at 37°C. The following day, 9:4 serial dilutions of the antibody were prepared in culture medium. SARS-CoV-2 pseudo-patterned VSV was diluted 1:30 in medium in the presence of 100 ng/mL anti-VSV-G antibody (clone 8G5F11, absolute antibody) and added 1:1 to each antibody dilution. The virus:antibody mixture was incubated at 37°C for 1 hour. The medium was removed from the cells and 50 μL of virus:antibody mixture was added to the cells. One hour after infection, 100 μL of medium was added to all wells and incubated at 37°C for 17-20 hours. Media was removed and 50 μL of Bio-Glo reagent (Promega) was added to each well. The disks were shaken on a disk shaker at 300 RPM for 15 minutes at room temperature and the RLUs were read on an EnSight disk reader (Perkin-Elmer). Transfection-based Adhesion Receptor Screening
Lenti -X293T細胞(Takara)經編碼以下受體候選物之質體(所有購自Genecopoeia)轉染:ACE2 (NM_021804)、DC-SIGN (NM_021155)、L-SIGN (BC110614)、LGALS3 (NM_002306)、SIGLEC1 (NM_023068)、SIGLEC3 (XM_057602)、SIGLEC9 (BC035365)、SIGLEC10 (NM_033130)、MGL (NM_182906)、MINCLE (NM_014358)、CD147 (NM_198589)、ASGR1 (NM_001671.4)、ASGR2 (NM_080913)、NRP1 (NM_003873)。轉染後一天,在37℃下使細胞在100 ng/ml抗VSV-G抗體(純系8G5F11,絕對抗體)存在下經SARS-CoV-2假模式化VSV以1:20稀釋度感染。感染後一小時,將100 μL培養基添加至所有孔中且在37℃下培育17-20小時。移除培養基且將50 μL Bio-Glo試劑(Promega)添加至各孔中。在室溫下使盤在盤振盪器上在300 RPM下振盪15分鐘,且在EnSight盤讀取器(Perkin-Elmer)上讀取RLU。反感染 Lenti-X293T cells (Takara) were transfected with plastids (all purchased from Genecopoeia) encoding the following receptor candidates: ACE2 (NM_021804), DC-SIGN (NM_021155), L-SIGN (BC110614), LGALS3 (NM_002306), SIGLEC1 (NM_023068), SIGLEC3 (XM_057602), SIGLEC9 (BC035365), SIGLEC10 (NM_033130), MGL (NM_182906), MINCLE (NM_014358), CD147 (NM_198589), ASGR1 (NM_001671.4), ASGR2 (NM_080913), NRP1 (NM_003873 ). One day after transfection, cells were infected with SARS-CoV-2 pseudopatterned VSV at a 1:20 dilution in the presence of 100 ng/ml anti-VSV-G antibody (clone 8G5F11, absolute) at 37°C. One hour after infection, 100 μL of medium was added to all wells and incubated at 37°C for 17-20 hours. Media was removed and 50 μL of Bio-Glo reagent (Promega) was added to each well. The disks were shaken on a disk shaker at 300 RPM for 15 minutes at room temperature and the RLUs were read on an EnSight disk reader (Perkin-Elmer). Anti-infection
使穩定地表現DC-SIGN、L-SIGN或SIGLEC1之親體HeLa細胞或HeLa細胞以5,000個細胞/孔接種於黑色外壁、透明底的96孔盤中。一天後,細胞達成約50%匯合且在37℃下在100 ng/mL抗VSV-G抗體(純系8G5F11,絕對抗體)存在下經SARS-CoV-2假模式化VSV以1:10稀釋度接種2小時。對於抗體介導之反感染的抑制,使細胞與10 ug/mL抗SIGLEC1抗體(Biolegend,純系7-239)一起預培育30 min。2 h接種之後,細胞用完全培養基洗滌四次且添加10,000個VeroE6-TMPRSS2細胞/孔,且在37℃下培育17-20 h以用於反感染。移除培養基且將50 μL Bio-Glo試劑(Promega)添加至各孔中。在室溫下使盤在盤振盪器上在300 RPM下振盪15分鐘,且在EnSight盤讀取器(Perkin-Elmer)上讀取RLU。CHO-S 細胞之細胞 - 細胞融合
使穩定地表現SARS-CoV-2 S-醣蛋白之CHO細胞以12'500個細胞/孔接種於96孔盤中以用於顯微法,且在第二天,將不同濃度之mAb及細胞核標記物Hoechst (最終稀釋度1:1000)添加至細胞且再培育24小時。使用Cytation 5 Imager (BioTek)確立融合程度,且使用對象偵測方案將細胞核偵測作為對象且量測其大小。發現稠合細胞(亦即,融合細胞)之細胞核在融合細胞之中心處聚集,且識別為獨特的較大對象,根據其大小來門控。稠合細胞中之對象的面積除以所有對象之總面積乘以100得到稠合細胞之百分比。免疫螢光分析 Parental HeLa cells or HeLa cells stably expressing DC-SIGN, L-SIGN or SIGLEC1 were seeded at 5,000 cells/well in black-walled, clear-bottomed 96-well dishes. One day later, cells reached approximately 50% confluency and were seeded at 1:10 dilution with SARS-CoV-2 pseudopatterned VSV in the presence of 100 ng/mL anti-VSV-G antibody (clone 8G5F11, absolute) at 37°
在用4%多聚甲醛接種30 min之後,將HEK 293T細胞接種到經聚-D-離胺酸塗佈之96孔盤(Sigma-Aldrich)上且固定24小時,接著二個PBS (pH 7.4)洗滌且用含0.25%Triton X-100之PBS滲透30 min。使細胞與在室溫下稀釋於3%奶粉/PBS中之一級抗體抗-DC-SIGN/L-SIGN (Biolegend,cat. 845002,1:500 dilution)、抗-DC-SIGN (Cell Signaling,cat. 13193S,1:500 dilution)、抗-SIGLEC1 (Biolegend,cat. 346002,1:500 dilution)或抗-ACE2 (R&D Systems,cat. AF933,1:200 dilution)一起培育2小時。在洗滌且與與1 ug/mL Hoechst33342混合之二級經Alexa647標記之抗體一起培育1小時之後,將盤在反向螢光顯微鏡(Echo Revolve)上成像。ACE2/TMPRSS2 RT-qPCR After seeding with 4% paraformaldehyde for 30 min,
使用NucleoSpin RNA Plus套組(Macherey-Nagel)根據製造商的方案自細胞中提取RNA。RNA根據製造商說明書使用高容量cDNA反轉錄套組(Applied Biosystems)進行反轉錄。根據製造商的方案使用Luna Universal qPCR主混合物(新英格蘭生物實驗室)定量ACE2 (正向引子:CAAGAGCAAACGGTTGAACAC,反向引子:CCAGAGCCTCTCATTGTAGTCT)、HPRT (正向引子:CCTGGCGTCGTGATTAGTG,反向引子: ACACCCTTTCCAAATCCTCAG)及TMPRSS2 (正向引子:CAAGTGCTCCRACTCTGGGAT,反向引子:AACACACCGRTTCTCGTCCTC)之胞內位準。使ACE2及TMPRSS2之位準標準化至HPRT。HeLa細胞用作參照樣品。所有qPCR在QuantStudio 3實時PCR系統(Applied Biosystems)上運行。SARS2 D614G 刺突蛋白產生及生物素標記 RNA was extracted from cells using the NucleoSpin RNA Plus kit (Macherey-Nagel) according to the manufacturer's protocol. RNA was reverse transcribed using the High Capacity cDNA Reverse Transcription Kit (Applied Biosystems) according to the manufacturer's instructions. ACE2 (forward primer: CAAGAGCAAACGGTTGAACAC, reverse primer: CCAGAGCCTCTCATTGTAGTCT), HPRT (forward primer: CCTGGCGTCGTGATTAGTG, reverse primer: ACACCCTTTCCAAATCCTCAG) and TMPRSS2 were quantified using the Luna Universal qPCR master mix (New England Biolabs) according to the manufacturer's protocol (forward primer: CAAGTGCTCCRACTCTGGGAT, reverse primer: AACACACCGRTTCTCGTCCTC). The levels of ACE2 and TMPRSS2 were normalized to HPRT. HeLa cells were used as reference samples. All qPCRs were run on a
使用293fectin作為轉染劑,將具有C端TEV裂解位點、T4噬菌體纖維蛋白摺疊子、8x His-、Avi-及EPEA-標籤之預融合穩定的SARS2 D614G刺突蛋白(包含胺基酸序列Q14至K1211)轉染至HEK293自由式細胞中。使細胞在37℃下三天以產生蛋白質。隨後,藉由在500 xg下使細胞離心30分鐘,接著在4000 xg下再自旋30分鐘來收穫上清液。細胞培養物上清液經由0.2 μM過濾器過濾,且負載到5 mL C-標籤親和基質管柱上,用50 mM Tris pH 8及200 mM NaCl預平衡。使用10管柱體積之100 mM Tris、200 mM NaCl及3.8 mM SEPEA肽使SARS2 D614G刺突蛋白溶離。濃縮溶離峰且使用50 mM Tris pH 8及200 mM NaCl作為操作緩衝液,在Superose 6增加10/300 GL凝膠過濾管柱上注射。收集對應於單分散SARS2 D614G刺突蛋白之SEC溶離份且在液氮中急驟冷凍以儲存在-80℃下。使用BirA500生物素標記套組自親合力對純化的SARS2 D614G刺突蛋白生物素標記。向50 μg刺突蛋白中添加5 ug BirA及11 uL BiomixA及BiomixB。在生物素標記反應期間之最終刺突蛋白濃度為約1 μM。使反應在4℃下進行16小時。隨後,使用用1×PBS pH 7.4預平衡之二個Zeba自旋管柱使蛋白質去鹽化。針對 DC-SIGN 、 L-SIGN 、 SIGLEC1 及 ACE-2 之流式細胞測量術分析 Using 293fectin as a transfection agent, pre-fused stabilized SARS2 D614G spike protein (containing the amino acid sequence Q14 to K1211) were transfected into HEK293 free-style cells. Cells were incubated at 37°C for three days for protein production. Subsequently, the supernatant was harvested by centrifuging the cells for 30 minutes at 500 xg, followed by a further 30 minutes of spinning at 4000 xg. Cell culture supernatants were filtered through 0.2 μM filters and loaded onto 5 mL C-tag affinity matrix columns, pre-equilibrated with 50
使表現DC-SIGN、L-SIGN、SIGLEC1或ACE2之HEK 293T細胞在4x106個細胞/mL下再懸浮且將100 μL/孔接種到V形底96孔盤(Corning,3894)上。使盤在2,000 rpm下離心5分鐘且用PBS (pH 7.4)洗滌。使細胞再懸浮於含有Ghost violet 510成活力染料(Cell Signaling,cat. 13-0870-T100,1:1,000稀釋度)之200 μL PBS中,在冰上培育15分鐘且隨後洗滌。使細胞再懸浮於在含有以1:100稀釋度:小鼠抗DC/L-SIGN (Biolegend,cat. 845002)、兔抗-DC-SIGN (Cell Signaling,cat. 13193)、小鼠抗SIGLEC1 (Biologend,cat. 346002)或山羊抗ACE2 (R&D Systems,cat. AF933)之一級抗體的PBS中用0.5% BSA (Sigma-Aldrich)製備之100 μL FACS緩衝液中。在冰上培育1小時之後,將細胞洗滌二次且再懸浮於含有在1:200稀釋度下之Alexa Fluor-488標記的二次抗體:山羊抗小鼠(Invitrogen cat. A11001)、山羊抗兔(Invitrogen cat. A11008)或驢抗山羊(Invitrogen cat. A11055)之FACS緩衝液中。在冰上培育45 min之後,細胞用200 μL FACS緩衝液洗滌三次且在室溫下用200 μL 4% PFA (阿法埃莎公司)固定15 min。洗滌細胞三次,再懸浮於200 μL FACS緩衝液中且藉由流式細胞測量術使用CytoFLEX流式細胞儀(Beckman Coulter)分析。結合至細胞之 SARS-CoV-2 刺突蛋白及 RBD 的流式細胞測量術
在室溫下使生物素標記之SARS-CoV-2刺突蛋白D614G蛋白質(Spikebiotin,內部產生)或生物素標記之SARS-CoV-2刺突蛋白受體-結合域(RBDbiotin,Sino Biological,40592-V08B)與Alexa Fluor® 647鏈黴抗生物素蛋白(AF647-strep,Invitrogen,S21374)以按體積計之1:20比率一起培育20 min。隨後將標記之蛋白質儲存於4℃下直至進一步使用。細胞用TrpLE Express (Gibco,12605-010)解離且使105個細胞轉移至96孔V底盤(Corning,3894)之各孔中。在流式細胞測量術緩衝液(2% FBS於PBS中(w/o Ca/Mg))中洗滌細胞二次,且在冰上在20 µg/ml之最終濃度下用Spikebiotin-AF647-strep染色或在7.5 µg/ml之最終濃度下用RBDbiotin-AF647-strep染色1 h。染色細胞用流式細胞測量術緩衝液洗滌二次,再懸浮於1% PFA (Electron Microscopy Sciences,15714-S)中且用Cytoflex LX (Beckman Coulter)分析。SARS-CoV-2 特異性 mAb 之重組表現 Biotin-labeled SARS-CoV-2 spike protein D614G protein (Spikebiotin, produced in-house) or biotin-labeled SARS-CoV-2 spike protein receptor-binding domain (RBDbiotin, Sino Biological, 40592) at room temperature -V08B) with Alexa Fluor® 647 Streptavidin (AF647-strep, Invitrogen, S21374) in a 1:20 ratio by volume for 20 min. The labeled protein was then stored at 4°C until further use. Cells were dissociated with TrpLE Express (Gibco, 12605-010) and 105 cells were transferred to each well of a 96-well V-chassis (Corning, 3894). Cells were washed twice in flow cytometry buffer (2% FBS in PBS (w/o Ca/Mg)) and stained with Spikebiotin-AF647-strep at a final concentration of 20 µg/ml on ice Or stain with RBDbiotin-AF647-strep at a final concentration of 7.5 µg/ml for 1 h. Stained cells were washed twice with flow cytometry buffer, resuspended in 1% PFA (Electron Microscopy Sciences, 15714-S) and analyzed with Cytoflex LX (Beckman Coulter). Recombinant performance of SARS-CoV-2 -specific mAbs
如先前所述,自SARS-CoV-2免疫供體之漿細胞或記憶B細胞中分離人類mAb。重組抗體在37℃及8% CO2下表現於ExpiCHO細胞中。使用ExpiFect胺轉染細胞。在用ExpiCHO進料及ExpiFectamine CHO增強子轉染之後1天,補充經轉染的細胞。在轉染之後八天收集細胞培養物上清液,且經由0.2 µm過濾器過濾。重組抗體使用5 mL HiTrap™ MabSelect™ PrismA管柱在ÄKTA xpress FPLC裝置上親和力純化,接著使用HiPrep 26/10去鹽化管柱與組胺酸緩衝液(20 mM組胺酸,8%蔗糖,pH 6)進行緩衝液交換。倉鼠中之 SARS - CoV - 2 感染 模型 病毒製劑 Human mAbs were isolated from plasma cells or memory B cells of SARS-CoV-2 immunized donors as previously described. Recombinant antibodies were expressed in ExpiCHO cells at 37°C and 8% CO2. Cells were transfected using ExpiFect amine. Transfected cells were replenished 1 day after transfection with ExpiCHO feed and ExpiFectamine CHO enhancer. Cell culture supernatants were collected eight days after transfection and filtered through 0.2 μm filters. Recombinant antibodies were affinity purified using a 5 mL HiTrap™ MabSelect™ PrismA column on an ÄKTA xpress FPLC device, followed by a
自獲自2020年二月自中國武漢返回的經RT-qPCR確認之無症狀性患者的鼻咽拭子中回收用於此研究中之SARS-CoV-2菌株βCov/Belgium/GHB-03021/2020 (EPI ISL 109 407976|2020-02-03)。藉由譜系學分析確認與原型武漢-Hu-1 2019-nCoV (GenBank寄存112編號MN908947.3)菌株之密切關係。藉由在HuH7及Vero E6細胞上連續繼代來分離感染性病毒;繼代6病毒用於本文所述之研究中。病毒原液之效價藉由用Reed及Muench方法在Vero E6細胞上進行端點稀釋來確定。細胞 The SARS-CoV-2 strain βCov/Belgium/GHB-03021/2020 used in this study was recovered from nasopharyngeal swabs obtained from RT-qPCR-confirmed asymptomatic patients who returned from Wuhan, China in February 2020 (EPI ISL 109 407976|2020-02-03). The close relationship with the prototype Wuhan-Hu-1 2019-nCoV (GenBank Accession No. 112 No. MN908947.3) strain was confirmed by pedigree analysis. Infectious virus was isolated by serial passage on HuH7 and Vero E6 cells;
在補充有10%胎牛血清(Integro)、1% L-麩醯胺酸(Gibco)及1%碳酸氫鹽(Gibco)之最小基本培養基(Gibco)中培養Vero E6細胞(非洲綠猴腎臟,ATCC CRL-1586)。用含有2%胎牛血清而非10%之培養基進行端點滴定。倉鼠中之 SARS-CoV-2 感染模型 Vero E6 cells (African green monkey kidney, African green monkey kidney, ATCC CRL-1586). Endpoint titrations were performed with medium containing 2% fetal bovine serum instead of 10%. SARS-CoV-2 infection model in hamsters
先前已描述SARS-CoV-2之倉鼠感染模型。特定研究設計展示於以下示意圖中。簡言之,野生型敘利亞黃金倉鼠(金倉鼠)係購自Janvier實驗室,且每二隻圈養在通氣的隔離籠(IsoCage N Biocontainment系統,Tecniplast)中,可隨意獲取食物及水且在籠中富集(木材阻擋)。在研究開始之前使動物適應4天。飼養條件及實驗程序經魯汶大學動物實驗倫理委員會批准(許可證P065- 2020)。雌性6-8週齡倉鼠用氯胺酮/甲苯噻嗪/阿托品麻醉且鼻內接種50 μL含有2×106 TCID50 SARS-CoV-2 (第0天)。治療方案 A hamster infection model for SARS-CoV-2 has been described previously. The specific study design is shown in the schematic below. Briefly, wild-type Syrian golden hamsters (Golden hamsters) were purchased from Janvier Laboratories and housed in ventilated isolation cages (IsoCage N Biocontainment system, Tecniplast) with ad libitum access to food and water and kept in the cages. enrichment (wood blocking). Animals were acclimated for 4 days prior to the start of the study. The rearing conditions and experimental procedures were approved by the Animal Experimentation Ethics Committee of the University of Leuven (License P065-2020). Female 6-8 week old hamsters were anesthetized with ketamine/xylazine/atropine and inoculated intranasally with 50 μL containing 2×106 TCID50 SARS-CoV-2 (day 0). treatment plan
在藉由腹膜內投予(i.p.)感染之前預防性處理動物48 h,且監測外觀、行為及體重。在感染後第4天,藉由腹膜內注射500 μL Dolethal (200 mg/mL戊巴比妥鈉,Vétoquinol SA)使倉鼠安樂死。收集肺且分別藉由RT-qPCR及端點病毒滴定來定量病毒RNA及感染性病毒。在感染之前收集血液樣品用於PK分析。SARS-CoV-2 RT-qPCR Animals were treated prophylactically for 48 h prior to infection by intraperitoneal administration (ip) and monitored for appearance, behavior and body weight. On
使用珠粒破壞(Precellys)使所收集之肺組織在350 μL RLT緩衝液(RNeasyMinikit,Qiagen)中均質化,且離心(10.000 rpm,5 min)以集結細胞碎片。根據製造商說明書提取RNA。在50 μL溶離液中,4 μL用作RT-qPCR反應中之模板。使用具有靶向核衣殼之N2引物及探針的iTaq通用探針一步驟RT-qPCR套組(BioRad)在LightCycler96平台(羅氏)上進行RT-qPCR。SARS-CoV-2 cDNA (IDT)之標準物用於表現每mg組織或每mL血清之病毒基因體複本。端點病毒滴定 Harvested lung tissue was homogenized in 350 μL RLT buffer (RNeasy Minikit, Qiagen) using bead disruption (Precellys) and centrifuged (10.000 rpm, 5 min) to collect cellular debris. RNA was extracted according to the manufacturer's instructions. Of the 50 μL of lysis buffer, 4 μL was used as template in RT-qPCR reactions. RT-qPCR was performed on the LightCycler96 platform (Roche) using the iTaq Universal Probe One-Step RT-qPCR Kit (BioRad) with N2 primers and probes targeting the nucleocapsid. SARS-CoV-2 cDNA (IDT) standards were used to represent viral genome copies per mg of tissue or per mL of serum. Endpoint virus titration
使用珠粒破壞(Precellys)使肺組織在350 μL最小基本培養基中均質化,且離心(10.000 rpm,5 min,4℃)以集結細胞碎片。為了定量感染性SARS-CoV-2粒子,在96孔盤中在匯合的Vero E6細胞上進行終點滴定。藉由Reed及Muench方法使用Lindenbach計算器計算病毒效價,且表示為每mg組織50%組織培養物感染劑量(TCID50)。組織學 Lung tissue was homogenized in 350 μL of minimal minimal medium using bead disruption (Precellys) and centrifuged (10.000 rpm, 5 min, 4° C.) to collect cellular debris. To quantify infectious SARS-CoV-2 particles, end-point titrations were performed on confluent Vero E6 cells in 96-well dishes. Virus titers were calculated by the method of Reed and Muench using the Lindenbach calculator and expressed as 50% tissue culture infectious dose per mg of tissue (TCID50). Histology
對於組織學檢查,將肺在4%甲醛中固定隔夜且包埋於鏈烷烴中。在用蘇木精及曙紅染色之後分析組織切片(5 μm),且藉由專門病理學家對肺損害無分別地進行評分。累積評分為1至3之評分參數如下:充血、肺泡內出血、支氣管壁中之凋亡體、壞死性細支氣管炎、血管周圍水腫、支氣管性肺炎、血管周圍發炎、血管周圍發炎及血管炎。免疫複合體與倉鼠單核細胞之結合 For histological examination, lungs were fixed in 4% formaldehyde overnight and embedded in paraffin. Tissue sections (5 μm) were analyzed after staining with hematoxylin and eosin, and lung lesions were scored indiscriminately by specialized pathologists. The scoring parameters with a cumulative score of 1 to 3 are as follows: congestion, intraalveolar hemorrhage, apoptotic bodies in the bronchial wall, necrotizing bronchiolitis, perivascular edema, bronchial pneumonia, perivascular inflammation, perivascular inflammation, and vasculitis. Binding of immune complexes to hamster monocytes
免疫複合體(IC)藉由使用精確莫耳比(分別為4:8:1)使S309 mAb (倉鼠IgG,wt或N297A)與經生物素標記之抗個體基因型Fab片段及Alexa-488-鏈黴抗生物素蛋白來產生。在4℃下用自未處理動物中獲得之新鮮成活的倉鼠脾細胞連續稀釋培育預先產生之螢光IC持續3小時。隨後在排除死亡細胞及在單核球群體上物理門控時藉由細胞測量術評估細胞結合。結果表示為整個單核球群體之Alexa-488平均螢光強度。生物資訊分析 Immune complexes (IC) were prepared by combining S309 mAb (hamster IgG, wt or N297A) with a biotinylated anti-idiotype Fab fragment and Alexa-488- produced by streptavidin. Serial dilutions of freshly viable hamster splenocytes obtained from untreated animals were incubated with pre-generated fluorescent ICs for 3 hours at 4°C. Cell binding was then assessed by cytometry while excluding dead cells and physically gating on monocyte populations. Results are expressed as the mean fluorescence intensity of Alexa-488 for the entire monocyte population. Bioinformatics Analysis
自Github (github.com/krasnowlab/HLCA)下載所處理之人類肺細胞圖譜(HLCA)資料及細胞類型標註。自NCBI GEO資料庫(ID:GSE158055)及Github (github.com/zhangzlab/covid_balf)下載所處理之單細胞轉錄組資料及來自SARS-CoV-2感染個體之肺上皮及免疫細胞的標註。自NCBI SRA (ID:PRJNA608742)下載來自藉由Liao等人之第二單細胞轉錄組學研究之可用的序列資料,以用於檢驗對應於病毒RNA之讀數。藉由對支持前導-TRS接合點之含TRS之讀數進行計數估計sgRNA相對於基因體RNA之比例。自Alexandersen等人中改編用於偵測前導-TRS接合點讀數的準則及方法。病毒基因體參考及TRS標註係基於武漢-Hu-1 NC_045512.2/MN90894749 。僅來自具有重度COVID-19之個體的2個樣品具有可偵測之前導-TRS接合點讀數(SRR11181958,SRR11181959)。The processed Human Lung Cell Atlas (HLCA) data and cell type annotations were downloaded from Github (github.com/krasnowlab/HLCA). The processed single-cell transcriptome data and annotations of lung epithelial and immune cells from SARS-CoV-2 infected individuals were downloaded from the NCBI GEO database (ID: GSE158055) and Github (github.com/zhangzlab/covid_balf). Available sequence data from a second single-cell transcriptomic study by Liao et al. was downloaded from NCBI SRA (ID: PRJNA608742) for examining reads corresponding to viral RNA. The ratio of sgRNA to gene body RNA was estimated by counting TRS-containing reads supporting the leader-TRS junction. Guidelines and methods for detecting lead-TRS junction reads were adapted from Alexandersen et al. The viral genome reference and TRS annotation were based on Wuhan-Hu-1 NC_045512.2/MN908947 49 . Only 2 samples from individuals with severe COVID-19 had detectable leader-TRS junction reads (SRR11181958, SRR11181959).
可組合上述各種實施例以提供其他實施例。本說明書中所參考及/或本申請資料表中所列之所有美國專利、美國專利申請公開案、美國專利申請案、外國專利、外國專利申請案及非專利公開案,包括2020年五月8日申請之美國專利申請案第63/022,392號、2020年五月13日申請之美國專利申請案第63/024,372號、2020年五月20日申請之美國專利申請案第63/027,814號、2020年五月22日申請之美國專利申請案第63/029,338號、2020年五月28日申請之美國專利申請案第63/031,286號、2020年六月1日申請之美國專利申請案第63/033,045號、2020年六月9日申請之美國專利申請案第63/036,683號、2020年六月16日申請之美國專利申請案第63/039,939號、2020年六月30日申請之美國專利申請案第63/046,465號、2020年七月28日申請之美國專利申請案第63/057,767號、2020年十月12日申請之美國專利申請案第63/090,667號、2020年十一月13日申請之美國專利申請案第63/113,450號、2021年二月25日申請之美國專利申請案第63/153,784號及2021年四月2日申請之美國專利申請案第63/170,368號均以全文引用的方式併入本文中。必要時,可以修改實施例之態樣以採用多個專利、申請案及公開案之構思,從而提供又另外的實施例。The various embodiments described above can be combined to provide other embodiments. All U.S. patents, U.S. patent application publications, U.S. patent applications, foreign patents, foreign patent applications, and non-patent publications referenced in this specification and/or listed in this application fact sheet, including May 8, 2020 US Patent Application No. 63/022,392, filed May 13, 2020, US Patent Application No. 63/024,372, filed May 13, 2020, US Patent Application No. 63/027,814, filed May 20, 2020, 2020 US Patent Application No. 63/029,338, filed on May 22, 2020, US Patent Application No. 63/031,286, filed May 28, 2020, and US Patent Application No. 63/, filed on June 1, 2020 US Patent Application No. 033,045, filed June 9, 2020, US Patent Application No. 63/036,683, filed June 16, 2020, US Patent Application No. 63/039,939, filed June 30, 2020 Case No. 63/046,465, US Patent Application No. 63/057,767, filed July 28, 2020, US Patent Application No. 63/090,667, filed October 12, 2020, November 13, 2020 U.S. Patent Application No. 63/113,450, filed Feb. 25, 2021, and U.S. Patent Application No. 63/170,368, filed April 2, 2021, are in full text Incorporated herein by reference. As necessary, aspects of the embodiments may be modified to employ the concepts of various patents, applications, and publications to provide yet further embodiments.
可鑒於以上實施方式對實施例進行此等及其他改變。一般而言,在以下申請專利範圍中,所用術語不應解釋為將申請專利範圍限制於本說明書及申請專利範圍中所揭露之特定實施例,而應解釋為包括所有可能之實施例以及該申請專利範圍有權要求的等效物之全部範疇。因此,申請專利範圍不受本發明限制。These and other changes can be made to the embodiments in light of the above embodiments. In general, in the following claims, the terms used should not be construed to limit the scope of the claims to the specific embodiments disclosed in this specification and the claims, but should be construed to include all possible embodiments and the application The patent scope is entitled to the full scope of equivalents to which it is entitled. Therefore, the scope of the patent application is not limited by the present invention.
無without
圖1A-1D 展示某些抗體與SARS-CoV-2刺突蛋白RBD及SARS-CoV-1刺突蛋白RBD之結合。由自SARS-CoV-2感染恢復之患者分離之人類單株抗體係以重組方式表現且測試藉由ELISA之RBD結合。圖1A展示五個抗體之結合,圖1B及圖1C各自展示七個抗體之結合,且圖1D展示四個抗體之結合。圖1B中上圖之二個抗體使用黑色符號展示。在圖1B中,S2X28結合由在整個測試濃度範圍內保持或接近零OD的線表示。在圖1B (頂部)中,S2X41結合由EC50為約20.01 ng/ml之曲線表示。在圖1A至1D中之每一者中,上圖展示與SARS-CoV-2 RBD之結合,且下部圖展示與SARS-CoV-1 RBD之結合。各圖右側的框(若存在)指示所指定抗體之計算的EC50值。 1A-1D show the binding of certain antibodies to the SARS-CoV-2 spike protein RBD and the SARS-CoV-1 spike protein RBD. Human monoclonal antibodies isolated from patients recovered from SARS-CoV-2 infection were recombinantly expressed and tested for RBD binding by ELISA. Figure 1A shows the binding of five antibodies, Figures IB and 1C each show the binding of seven antibodies, and Figure ID shows the binding of four antibodies. The top two antibodies in Figure IB are shown with black symbols. In Figure IB, S2X28 binding is represented by a line that maintains or near zero OD over the entire range of concentrations tested. In Figure IB (top), S2X41 binding is represented by a curve with an EC50 of about 20.01 ng/ml. In each of Figures 1A-1D, the upper panel shows binding to the SARS-CoV-2 RBD, and the lower panel shows binding to the SARS-CoV-1 RBD. Boxes to the right of each figure (if present) indicate calculated EC50 values for the indicated antibodies.
圖2 展示藉由由自SARS-CoV-2感染恢復之患者分離之以重組方式表現的單株抗體抑制結合至人類ACE2之SARS-CoV-2 RBD。ELISA盤係用重組人類ACE2 (內部產生)塗佈。在PBS中在2 ug/ml下用ACE2進行塗佈。使盤在4℃下培育隔夜,且在室溫下用阻斷劑酪蛋白(來自Thermofisher之1%酪蛋白)進行阻斷1小時。 Figure 2 shows inhibition of SARS-CoV-2 RBD binding to human ACE2 by recombinantly expressed monoclonal antibodies isolated from patients recovered from SARS-CoV-2 infection. ELISA plates were coated with recombinant human ACE2 (generated in-house). Coating was performed with ACE2 at 2 ug/ml in PBS. The plates were incubated overnight at 4°C and blocked with the blocking agent casein (1% casein from Thermofisher) for 1 hour at room temperature.
圖 3A-3F 展示使用針對SARS-CoV-2假模式化病毒之某些抗體的感染之中和分析的結果。以重組方式表現由自SARS-CoV-2感染恢復之患者分離之單株抗體,且在中和分析中針對經SARS-CoV-2刺突蛋白假模式化之鼠白血病病毒(MLV)進行測試。圖3A展示三個抗體之結果。圖3B-3F各自展示四個抗體之結果。在x軸中指示之濃度下測試抗體。各圖右側的框(若存在)指示所指定抗體之計算的IC50。 3A-3F show the results of infection neutralization assays using certain antibodies against SARS-CoV-2 pseudo-patterned virus. Monoclonal antibodies isolated from patients who recovered from SARS-CoV-2 infection were expressed recombinantly and tested in neutralization assays against murine leukemia virus (MLV) pseudo-patterned with the SARS-CoV-2 spike protein. Figure 3A shows the results for three antibodies. Figures 3B-3F each show the results for the four antibodies. Antibodies were tested at the concentrations indicated in the x-axis. The box to the right of each figure (if present) indicates the calculated IC50 of the indicated antibody.
圖4A-4N 展示其他抗體與SARS-CoV-2刺突蛋白、SARS-CoV-2刺突蛋白RBD及SARS-CoV-1刺突蛋白RBD之結合。由自SARS-CoV-2感染恢復之患者分離之單株抗體係以重組方式表現且測試藉由ELISA之RBD結合。各圖右側的框指示所指定抗體之計算的EC50值。 Figures 4A-4N show the binding of other antibodies to SARS-CoV-2 spike protein, SARS-CoV-2 spike protein RBD, and SARS-CoV-1 spike protein RBD. Monoclonal antibody systems isolated from patients recovered from SARS-CoV-2 infection were recombinantly expressed and tested for RBD binding by ELISA. The boxes to the right of each figure indicate the calculated EC50 values for the indicated antibodies.
圖5A-5D 展示使用針對SARS-CoV-2假模式化病毒之其他抗體的感染之中和分析的結果。以重組方式表現由自SARS-CoV-2感染恢復之患者分離之單株抗體,且在中和分析(一個抗體/分析)中針對經SARS-CoV-2刺突蛋白假模式化之鼠白血病病毒(MLV)進行測試。圖5A及5C各自展示三個抗體之結果。圖5B展示二個抗體之結果且圖5D展示四個抗體之結果。在x軸上指示之濃度下測試抗體。各圖右側的框(若存在)指示所指定抗體之計算的EC50。 Figures 5A-5D show the results of infection neutralization assays using additional antibodies against SARS-CoV-2 pseudo-patterned virus. Monoclonal antibodies isolated from patients recovered from SARS-CoV-2 infection were recombinantly expressed and in neutralization assays (one antibody/assay) against murine leukemia virus pseudopatterned with the SARS-CoV-2 spike protein (MLV) for testing. Figures 5A and 5C each show the results for three antibodies. Figure 5B shows the results for two antibodies and Figure 5D shows the results for four antibodies. Antibodies were tested at the concentrations indicated on the x-axis. The box to the right of each figure (if present) indicates the calculated EC50 of the indicated antibody.
圖6A 及6B
展示使用針對可靠SARS-CoV-2病毒之單株抗體的感染之中和分析的結果。比較抗體「S309-v2」包含SEQ ID NO.: 342中所闡述之VH胺基酸序列及SEQ ID NO.: 346中所闡述之VL胺基酸序列(分別如SEQ ID NO.:343-345及347-349中所闡述之CDRH1-H3及L1-L3),且為一種由自SARS-CoV-1感染恢復之患者分離的抗體之經工程化變異體。使在補充有10% FBS (VWR)及1x青黴素/鏈黴素(Thermo Fisher Scientific)之DMEM中培養之Vero E6細胞在20,000個細胞/孔下接種於白色96孔盤中且附著隔夜。在37℃下在BSL-3設施中使抗體之連續1:4稀釋液與200 pfu之SARS-CoV-2 (分離株USA-WA1/2020,繼代3,在Vero E6細胞中繼代)一起培育30分鐘。移除細胞上清液且將病毒-抗體混合物添加至細胞中。24小時感染後,用4%多聚甲醛固定細胞30分鐘,接著二個PBS (pH 7.4)洗滌,且用含0.25% Triton X-100之PBS滲透30分鐘。在5%奶粉/PBS中阻斷30分鐘之後,將細胞與靶向SARS-CoV-2核衣殼蛋白(Sino Biological,cat. 40143-R001)之一級抗體在1:2000稀釋下一起培育1小時。在洗滌且與與1 µg/ml Hoechst33342混合之二級經Alexa647標記之抗體一起培育1小時之後,使盤在自動細胞成像讀取器上(Cytation 5,Biotek)成像,且使用製造商提供的軟體對核衣殼-陽性細胞進行計數。使用Prism軟體(GraphPad Prism 8.0)處理資料。 Figures 6A and 6B show the results of an infection neutralization assay using monoclonal antibodies against a reliable SARS-CoV-2 virus. Comparative antibody "S309-v2" comprises the VH amino acid sequence set forth in SEQ ID NO.: 342 and the VL amino acid sequence set forth in SEQ ID NO.: 346 (respectively as SEQ ID NO.: 343-345 and CDRH1-H3 and L1-L3 as described in 347-349), and is an engineered variant of an antibody isolated from a patient who has recovered from SARS-CoV-1 infection. Vero E6 cells cultured in DMEM supplemented with 10% FBS (VWR) and 1x penicillin/streptomycin (Thermo Fisher Scientific) were seeded at 20,000 cells/well in white 96-well dishes and attached overnight. Serial 1:4 dilutions of the antibody were combined with 200 pfu of SARS-CoV-2 (isolate USA-WA1/2020,
圖7A-7D 展示使用針對SARS-CoV-2假模式化病毒之其他抗體的感染之中和分析的結果。以重組方式表現由自SARS-CoV-2感染恢復之患者分離之單株抗體,且在中和分析中針對經SARS-CoV-2刺突蛋白假模式化之鼠白血病病毒(MLV)進行測試。圖7A及圖7B各自展示由自SARS-CoV-1感染恢復之患者分離的四個抗體,以及比較抗體S309 (SEQ ID NO.:139之VH胺基酸序列、SEQ ID NO.:143之VL胺基酸序列;分別如SEQ ID NO.:140-142及144-146中所闡述之CDRH1-H3及L1-L3)之結果。圖7C展示三個抗體以及S309之結果,且圖7D展示二個抗體以及S309之結果。圖7D中之抗體「S2H58」包含SEQ ID NO.:228中所闡述之VH胺基酸序列及SEQ ID NO.:238中所闡述之VL胺基酸序列。在x軸上指示之濃度下測試抗體。 7A-7D show the results of infection neutralization assays using additional antibodies against SARS-CoV-2 pseudo-patterned virus. Monoclonal antibodies isolated from patients who recovered from SARS-CoV-2 infection were expressed recombinantly and tested in neutralization assays against murine leukemia virus (MLV) pseudo-patterned with the SARS-CoV-2 spike protein. Figures 7A and 7B each show four antibodies isolated from patients who recovered from SARS-CoV-1 infection, and comparative antibody S309 (VH amino acid sequence of SEQ ID NO.: 139, VL of SEQ ID NO.: 143 Amino acid sequences; results for CDRH1-H3 and L1-L3) as set forth in SEQ ID NO.: 140-142 and 144-146, respectively. Figure 7C shows the results for three antibodies and S309, and Figure 7D shows the results for two antibodies and S309. Antibody "S2H58" in Figure 7D comprises the VH amino acid sequence set forth in SEQ ID NO.:228 and the VL amino acid sequence set forth in SEQ ID NO.:238. Antibodies were tested at the concentrations indicated on the x-axis.
圖8A 及8B 展示抗體與SARS-CoV-2刺突蛋白RBD及SARS-CoV-1刺突蛋白RBD之結合。由自SARS-CoV-2感染恢復之患者分離之單株抗體係以重組方式表現且測試藉由ELISA之RBD結合。圖8A展示由自SARS-CoV-1感染恢復之患者分離的五個抗體及一個比較抗體,S309 (SEQ ID NO.:139之VH胺基酸序列、SEQ ID NO.:143之VL胺基酸序列;分別如SEQ ID NO.:140-142及144-146中所闡述之CDRH1-H3及L1-L3)的結合。圖8B展示四個抗體及S309之結合。在圖8A及圖8B中之每一者中,左側圖展示與SARS-CoV-2 RBD之結合,且右側圖展示與SARS-CoV-1 RBD之結合。各圖右側的框指示所指定抗體之計算的EC50值。 Figures 8A and 8B show the binding of antibodies to the SARS-CoV-2 spike protein RBD and the SARS-CoV-1 spike protein RBD. Monoclonal antibody systems isolated from patients recovered from SARS-CoV-2 infection were recombinantly expressed and tested for RBD binding by ELISA. Figure 8A shows five antibodies isolated from a patient recovered from SARS-CoV-1 infection and one comparative antibody, S309 (VH amino acid sequence of SEQ ID NO.: 139, VL amino acid sequence of SEQ ID NO.: 143 Sequences; binding of CDRH1-H3 and L1-L3) as set forth in SEQ ID NO.: 140-142 and 144-146, respectively. Figure 8B shows the binding of the four antibodies and S309. In each of Figures 8A and 8B, the left panel shows binding to the SARS-CoV-2 RBD, and the right panel shows binding to the SARS-CoV-1 RBD. The boxes to the right of each figure indicate the calculated EC50 values for the indicated antibodies.
圖9A-9F 展示使用針對SARS-CoV-2假模式化病毒之抗體的感染之中和分析的結果。以重組方式表現由自SARS-CoV-2感染恢復之患者分離之單株抗體,且在中和分析中針對經SARS-CoV-2刺突蛋白假模式化之鼠白血病病毒(MLV)進行測試。在x軸上指示之濃度下測試抗體。所計算之IC50、IC80及IC90值(以ng/ml表示)展示於各圖中之圖式下方。 9A-9F show the results of infection neutralization assays using antibodies against SARS-CoV-2 pseudo-patterned virus. Monoclonal antibodies isolated from patients who recovered from SARS-CoV-2 infection were expressed recombinantly and tested in neutralization assays against murine leukemia virus (MLV) pseudo-patterned with the SARS-CoV-2 spike protein. Antibodies were tested at the concentrations indicated on the x-axis. Calculated IC50, IC80 and IC90 values (expressed in ng/ml) are shown below the graph in each figure.
圖10A-10E 展示抗體與SARS-CoV-2刺突蛋白RBD及SARS-CoV-1刺突蛋白RBD (各圖中之圖式下方中標記為「SARS RBD」之SARS-CoV-1刺突蛋白RBD)之結合。由自SARS-CoV-2感染恢復之患者分離之單株抗體係以重組方式表現且測試藉由ELISA之RBD結合。在圖10A至10E中之每一者中,上圖展示與SARS-CoV-2 RBD之結合,且下部圖展示與SARS-CoV-1 RBD之結合。各圖右側的框(若存在)展示所指定抗體之計算的EC50值。 Figures 10A-10E show antibodies to the SARS-CoV-2 spike protein RBD and the SARS-CoV-1 spike protein RBD (the SARS-CoV-1 spike protein labeled "SARS RBD" in the lower part of the figure in each figure RBD) combination. Monoclonal antibody systems isolated from patients recovered from SARS-CoV-2 infection were recombinantly expressed and tested for RBD binding by ELISA. In each of Figures 10A-10E, the upper panel shows binding to the SARS-CoV-2 RBD, and the lower panel shows binding to the SARS-CoV-1 RBD. Boxes to the right of each figure (if present) show calculated EC50 values for the indicated antibodies.
圖11A-11D 展示使用某些單株抗體之感染之中和分析的結果。在針對經SARS-CoV-2刺突蛋白假模式化之鼠白血病病毒(MLV)的中和分析中測試抗體。圖11A展示單株抗體S2X193及S2X195之結果。圖11B展示單株抗體S2X219及S2X244之結果。圖11C展示單株抗體S2X246及S2X256之結果。圖11D展示單株抗體S2X278之結果。x軸展示抗體之總濃度。所計算的IC50、IC80及IC90值(以ng/ml表示)展示於各圖之右側的框中。 11A-11D show the results of infection neutralization assays using certain monoclonal antibodies. Antibodies were tested in a neutralization assay against murine leukemia virus (MLV) pseudopatterned with the SARS-CoV-2 spike protein. Figure 11A shows the results for monoclonal antibodies S2X193 and S2X195. Figure 11B shows the results for monoclonal antibodies S2X219 and S2X244. Figure 11C shows the results for monoclonal antibodies S2X246 and S2X256. Figure 1 ID shows the results for the monoclonal antibody S2X278. The x-axis shows the total concentration of antibody. Calculated IC50, IC80 and IC90 values (expressed in ng/ml) are shown in the boxes to the right of each figure.
圖12A-12D 展示使用某些單株抗體之感染之中和分析的結果。以重組方式表現抗體且在針對經SARS-CoV-2刺突蛋白假模式化之水泡性口炎病毒(VSV)的中和分析中測試。圖12A展示單株抗體S2X193及S2X195,以及比較抗體S2X190之結果。圖12B展示單株抗體S2X219之結果。圖12C展示單株抗體S2X244、S2X246及S2X256之結果。圖12D展示單株抗體S2X269及S2X278之結果。在x軸上指示之濃度下測試抗體。所計算的IC50及IC90值(以ng/ml表示)展示於各圖之底部。 12A-12D show the results of infection neutralization assays using certain monoclonal antibodies. Antibodies were expressed recombinantly and tested in a neutralization assay against vesicular stomatitis virus (VSV) pseudopatterned with the SARS-CoV-2 spike protein. Figure 12A shows the results of monoclonal antibodies S2X193 and S2X195, and the comparative antibody S2X190. Figure 12B shows the results for the monoclonal antibody S2X219. Figure 12C shows the results for monoclonal antibodies S2X244, S2X246 and S2X256. Figure 12D shows the results for monoclonal antibodies S2X269 and S2X278. Antibodies were tested at the concentrations indicated on the x-axis. Calculated IC50 and IC90 values (expressed in ng/ml) are shown at the bottom of each figure.
圖13A 及13B 展示某些單株抗體抑制SARS-CoV-2 RBD與人類ACE2之結合的能力。ELISA盤在2 µg/ml下在PBS中用重組人類ACE2塗佈。在37℃下使單株抗體之連續稀釋液與SARS-CoV-2 RBD在20ng/ml (RBD與小鼠Fc稠合,來自Sino Biological)下一起培育30分鐘,且隨後轉移至經ACE2塗佈之盤上,在室溫下再培育20分鐘。使用十一個連續稀釋,以10 µg/ml起始且在1:3下稀釋。使用與鹼性磷酸酶共軛之二級抗體山羊F(ab')2抗小鼠IgG(H+L)抗體(Southern Biotech)偵測RBD與ACE2之結合,接著添加含pNPP (Sigma Aldrich N2765-100TAB)之碳酸氫鹽緩衝液且在405nm下讀取吸光度。 Figures 13A and 13B show the ability of certain monoclonal antibodies to inhibit the binding of SARS-CoV-2 RBD to human ACE2. ELISA plates were coated with recombinant human ACE2 in PBS at 2 µg/ml. Serial dilutions of monoclonal antibodies were incubated with SARS-CoV-2 RBD at 20ng/ml (RBD fused to mouse Fc from Sino Biological) for 30 minutes at 37°C and then transferred to ACE2-coated plate and incubate for an additional 20 minutes at room temperature. Eleven serial dilutions were used, starting at 10 µg/ml and diluting at 1:3. Binding of RBD to ACE2 was detected using secondary antibody goat F(ab')2 anti-mouse IgG(H+L) antibody (Southern Biotech) conjugated to alkaline phosphatase, followed by addition of pNPP (Sigma Aldrich N2765- 100 TAB) in bicarbonate buffer and read absorbance at 405 nm.
圖13A展示單株抗體S2X193及S2X195,以及四個比較抗體之結果。圖13B展示單株抗體S2X219、S2X244、S2X246、S2X256、S2X269及S2X278之結果。所計算的IC50值展示於各圖之圖式的右側。Figure 13A shows the results for monoclonal antibodies S2X193 and S2X195, and four comparative antibodies. Figure 13B shows the results for monoclonal antibodies S2X219, S2X244, S2X246, S2X256, S2X269 and S2X278. The calculated IC50 values are shown on the right side of the graph of each figure.
圖14A-14H 展示本揭露內容之某些單株抗體與SARS-CoV-2 RBD之結合親和力及親合力,如藉由Octet所量測。使抗體(如各圖右下方所指示)在2.7 µg/ml下負載於蛋白質A針上。使SARS-CoV-2 RBD在6 µg/ml、1.5 µg/ml或0.4 µg/ml下負載5分鐘。量測解離7分鐘。各圖中之豎直虛線指示解離期之起始。 Figures 14A-14H show the binding affinity and avidity of certain monoclonal antibodies of the present disclosure to the SARS-CoV-2 RBD, as measured by Octet. Antibodies (as indicated in the lower right of each figure) were loaded onto Protein A needles at 2.7 µg/ml. SARS-CoV-2 RBD was loaded at 6 µg/ml, 1.5 µg/ml or 0.4 µg/ml for 5 minutes. Dissociation was measured for 7 minutes. The vertical dashed line in each figure indicates the start of the dissociation period.
圖15 展示如藉由Octet所量測之單株抗體S2X219 (第一組)及S2X193、S2X195、S2X244、S2X246、S2X256、S2X269及S2X278,以及四個比較抗體(第二組)與SARS-CoV-1 RBD之結合親和力及親合力。使抗體在2.7 µg/ml下負載於蛋白質A針上。使SARS-CoV-1 RBD在6 µg/ml下負載5分鐘。量測解離7分鐘。各圖式中之豎直虛線指示解離期之起始。在第二組中,曲線之次序(自上至下)對應於圖式右側列出的抗體圖式(自上至下)。藉助於說明,頂部曲面對應於S2X127,且底部曲面對應於S2X278。 Figure 15 shows monoclonal antibodies S2X219 (first panel) and S2X193, S2X195, S2X244, S2X246, S2X256, S2X269 and S2X278 as measured by Octet, and four comparative antibodies (second panel) with SARS-CoV- 1 Binding affinity and avidity of RBD. The antibody was loaded onto the Protein A needle at 2.7 µg/ml. The SARS-CoV-1 RBD was loaded at 6 µg/ml for 5 minutes. Dissociation was measured for 7 minutes. The vertical dashed line in each figure indicates the start of the dissociation period. In the second set, the order of the curves (top to bottom) corresponds to the antibody scheme (top to bottom) listed to the right of the scheme. By way of illustration, the top surface corresponds to S2X127 and the bottom surface corresponds to S2X278.
圖16A-16D 展示如藉由在感染後24小時核衣殼(NP)表現之抑制所評定,藉由某些單株抗體之SARS-CoV-2感染的中和。圖16A展示藉由單株抗體S2N22、S2N12、S2N28、S2N25、S2H58-v2以及比較抗體S309-v2 (SEQ ID NO.:342之VH胺基酸序列、SEQ ID NO.:346之VL胺基酸序列;如分別SEQ ID NO.:343-345及347-349中所闡述之CDRH1-H3及L1-L3)之SARS-CoV-2感染的中和。圖16B展示藉由單株抗體S2E9、S2E6、S2E13、S2K4、S2E14、S2E7及S2E12 (SEQ ID NO.:399之VH胺基酸序列、SEQ ID NO.:403之VL胺基酸序列;如分別SEQ ID NO.:400、766、402及404-406中所闡述之CDRH1-H3及L1-L3),以及比較抗體S309-v2之SARS-CoV-2感染的中和。圖16C展示藉由單株抗體S2H37、S2H73、S2H40、S2H70及S2H71,以及比較抗體S309-v2 (具有M428L/N434S Fc突變)之SARS-CoV-2感染的中和。圖16D展示藉由單株抗體S2X30、S2H58-v1、S2H66、S2H62及S2H30,以及比較抗體S309-v2之SARS-CoV-2感染的中和。所計算的IC50值展示於各圖下方。 Figures 16A-16D show neutralization of SARS-CoV-2 infection by certain monoclonal antibodies as assessed by inhibition of nucleocapsid (NP) expression at 24 hours post infection. FIG. 16A shows the amino acid sequence of VH by monoclonal antibodies S2N22, S2N12, S2N28, S2N25, S2H58-v2 and comparative antibody S309-v2 (SEQ ID NO.:342, VL amino acid sequence of SEQ ID NO.:346) Sequences; neutralization of SARS-CoV-2 infection by CDRH1-H3 and L1-L3) as set forth in SEQ ID NO.: 343-345 and 347-349, respectively. Figure 16B shows the VH amino acid sequence of SEQ ID NO.:399, the VL amino acid sequence of SEQ ID NO.:403 by monoclonal antibodies S2E9, S2E6, S2E13, S2K4, S2E14, S2E7 and S2E12; as respectively CDRH1-H3 and L1-L3 as set forth in SEQ ID NO.: 400, 766, 402 and 404-406), and the neutralization of SARS-CoV-2 infection by comparative antibody S309-v2. Figure 16C shows neutralization of SARS-CoV-2 infection by monoclonal antibodies S2H37, S2H73, S2H40, S2H70 and S2H71, and comparative antibody S309-v2 (with M428L/N434S Fc mutation). Figure 16D shows neutralization of SARS-CoV-2 infection by monoclonal antibodies S2X30, S2H58-v1, S2H66, S2H62 and S2H30, and comparative antibody S309-v2. Calculated IC50 values are shown below each figure.
圖17A-17C 展示使用某些單株抗體之感染之中和分析的結果。圖17A展示單株抗體S2M11及S2M28之結果。圖17B展示單株抗體S2M16之結果。圖17C展示單株抗體S2M7及S2L49之結果。在針對經SARS-CoV-2刺突蛋白假模式化之鼠白血病病毒(MLV)的中和分析中測試抗體。x軸展示抗體之總濃度。所計算之IC50、IC80及IC90值(以ng/ml表示)展示於各圖下方的框中。 Figures 17A-17C show the results of infection neutralization assays using certain monoclonal antibodies. Figure 17A shows the results for monoclonal antibodies S2M11 and S2M28. Figure 17B shows the results for the monoclonal antibody S2M16. Figure 17C shows the results for monoclonal antibodies S2M7 and S2L49. Antibodies were tested in a neutralization assay against murine leukemia virus (MLV) pseudopatterned with the SARS-CoV-2 spike protein. The x-axis shows the total concentration of antibody. Calculated IC50, IC80 and IC90 values (expressed in ng/ml) are shown in the boxes below each figure.
圖18A-18E 展示某些單株抗體與SARS-CoV-2刺突蛋白、SARS-CoV-2刺突蛋白RBD、SARS-CoV-1刺突蛋白及SARS-CoV-1刺突蛋白RBD之結合。由自SARS-CoV-2感染恢復之患者分離之抗體係以重組方式表現且測試藉由ELISA之刺突蛋白及刺突蛋白RBD結合。各圖右側的框展示所計算之EC50值(表示為ng/ml)。 Figures 18A-18E show binding of certain monoclonal antibodies to SARS-CoV-2 Spike, SARS-CoV-2 Spike RBD, SARS-CoV-1 Spike, and SARS-CoV-1 Spike RBD . Antibodies isolated from patients recovered from SARS-CoV-2 infection were recombinantly expressed and tested for Spike and Spike RBD binding by ELISA. The boxes to the right of each figure show the calculated EC50 values (expressed in ng/ml).
圖19A-19E 展示使用某些單株抗體之感染之中和分析的結果。在針對經SARS-CoV-2刺突蛋白假模式化之鼠白血病病毒(MLV)的中和分析中測試抗體。圖19A展示單株抗體S2X149及S2X179之結果。圖19B展示單株抗體S2D65之結果。圖19C展示單株抗體S2D97之結果。圖19D展示單株抗體S2D106之結果。圖19E展示單株抗體S2H101之結果。x軸展示抗體之總濃度。所計算的IC50、IC80及IC90值展示於各圖之右側框中,在框的左側欄中。 Figures 19A-19E show the results of infection neutralization assays using certain monoclonal antibodies. Antibodies were tested in a neutralization assay against murine leukemia virus (MLV) pseudopatterned with the SARS-CoV-2 spike protein. Figure 19A shows the results for monoclonal antibodies S2X149 and S2X179. Figure 19B shows the results for the monoclonal antibody S2D65. Figure 19C shows the results for monoclonal antibody S2D97. Figure 19D shows the results for the monoclonal antibody S2D106. Figure 19E shows the results for monoclonal antibody S2H101. The x-axis shows the total concentration of antibody. The calculated IC50, IC80 and IC90 values are shown in the right box of each figure, in the left column of the box.
圖20A 及20B 展示人類單株抗體S2X149及比較抗體S309-v2 LS (SEQ ID NO.:342之VH胺基酸序列、SEQ ID NO.:346之VL胺基酸序列;如分別SEQ ID NO.:343-345及347-349中所闡述之CDRH1-H3及L1-L3;表示為具有M428L及N434S Fc突變之rIgG1)與SARS-CoV-1刺突蛋白、SARS-CoV-1刺突蛋白RBD及SARS-CoV-2刺突蛋白RBD之結合。人類單株抗體以重組方式表現且藉由ELISA測試結合。圖20A展示抗體與SARS-CoV-1刺突蛋白RBD (上圖)及SARS-CoV-1刺突蛋白(下圖)之結合。圖20B展示抗體與SARS-CoV-2刺突蛋白RBD (上圖)及與未經塗佈之對照盤(下圖)之結合。圖式右側的框展示所計算的EC50值。 Figures 20A and 20B show human monoclonal antibody S2X149 and comparative antibody S309-v2 LS (VH amino acid sequence of SEQ ID NO.:342, VL amino acid sequence of SEQ ID NO.:346; as SEQ ID NO.:346, respectively; : CDRH1-H3 and L1-L3 as described in 343-345 and 347-349; expressed as rIgG1 with M428L and N434S Fc mutations) and SARS-CoV-1 spike protein, SARS-CoV-1 spike protein RBD and binding of the SARS-CoV-2 spike protein RBD. Human monoclonal antibodies were expressed recombinantly and tested for binding by ELISA. Figure 20A shows antibody binding to the SARS-CoV-1 spike protein RBD (top panel) and SARS-CoV-1 spike protein (bottom panel). Figure 20B shows antibody binding to the SARS-CoV-2 spike protein RBD (upper panel) and to uncoated control discs (lower panel). The boxes to the right of the figures show the calculated EC50 values.
圖21A 及21B 展示人類單株抗體S2X179及比較抗體S2X200與SARS-CoV-1刺突蛋白、SARS-CoV-1刺突蛋白RBD及SARS-CoV-2刺突蛋白RBD之結合。人類單株抗體以重組方式表現且藉由ELISA測試結合。圖21A展示抗體與SARS-CoV-1刺突蛋白RBD (上圖)及SARS-CoV-1刺突蛋白(下圖)之結合。圖21B展示抗體與SARS-CoV-2刺突蛋白RBD (上圖)及與未經塗佈之對照盤(下圖)之結合。圖21B中頂部圖式之右側的框展示用於結合SARS-CoV-2 RBD之所計算的EC50值。 Figures 21A and 21B show the binding of human monoclonal antibody S2X179 and comparative antibody S2X200 to SARS-CoV-1 Spike, SARS-CoV-1 Spike RBD, and SARS-CoV-2 Spike RBD. Human monoclonal antibodies were expressed recombinantly and tested for binding by ELISA. Figure 21A shows antibody binding to SARS-CoV-1 spike protein RBD (upper panel) and SARS-CoV-1 spike protein (lower panel). Figure 21B shows antibody binding to the SARS-CoV-2 spike protein RBD (upper panel) and to uncoated control discs (lower panel). The box to the right of the top graph in Figure 21B shows the calculated EC50 values for binding to the SARS-CoV-2 RBD.
圖22A 及22B 展示人類單株抗體S2H101、S2D65 (22A)、S2D97及S2D106 (22B)與SARS-CoV-2刺突蛋白RBD之結合。以重組方式表現抗體且藉由ELISA測試結合。圖式右側的框展示所計算的EC50值。 Figures 22A and 22B show the binding of human monoclonal antibodies S2H101, S2D65 (22A), S2D97 and S2D106 (22B) to the SARS-CoV-2 spike protein RBD. Antibodies were expressed recombinantly and tested for binding by ELISA. The boxes to the right of the figures show the calculated EC50 values.
圖23A 及23B 展示如藉由ELISA所量測之藉由SARS-CoV-2 RBD對人類ACE2之結合的抗體抑制。圖23A展示單株抗體S2X149之結果。圖24B展示單株抗體S2X179及比較抗體S2X200之結果。所計算的IC50值展示於各圖式右側。 Figures 23A and 23B show antibody inhibition of human ACE2 binding by SARS-CoV-2 RBD as measured by ELISA. Figure 23A shows the results for the monoclonal antibody S2X149. Figure 24B shows the results for monoclonal antibody S2X179 and comparative antibody S2X200. Calculated IC50 values are shown to the right of each figure.
圖24 概述使用單株抗體S309及其他抗刺突蛋白抗體研究之定量的表位-特異性血清學之結果,如由結合競爭、低溫EM及晶體學資料所測定。帶下劃線的抗體與SARS-CoV-1交叉反應。 Figure 24 summarizes the results of quantitative epitope-specific serology studies using monoclonal antibody S309 and other anti-Spike antibodies, as determined by binding competition, cryo-EM and crystallographic data. Underlined antibodies cross-react with SARS-CoV-1.
圖25A 及25B 展示藉由某些單株抗體中和SARS-CoV-2感染。圖25A展示本揭露內容之四個抗體以及比較抗體S309 N55Q LS及S2X193之結果。S309 N55Q LS包含SEQ ID NO:342中所闡述之VH胺基酸序列及SEQ ID NO: 346中所闡述之VL胺基酸序列,且包含Fc區中之MLNS修飾。圖25B展示抗體S2X129及S2X132,以及四個比較抗體之結果。所計算的IC50值展示於各圖下方的框中。所計算的EC50及EC90值展示於各圖之底部。 Figures 25A and 25B show neutralization of SARS-CoV-2 infection by certain monoclonal antibodies. Figure 25A shows the results for the four antibodies of the present disclosure as well as the comparative antibodies S309 N55Q LS and S2X193. The S309 N55Q LS comprises the VH amino acid sequence set forth in SEQ ID NO: 342 and the VL amino acid sequence set forth in SEQ ID NO: 346, and comprises an MLNS modification in the Fc region. Figure 25B shows the results for antibodies S2X129 and S2X132, and four comparative antibodies. Calculated IC50 values are shown in the boxes below each figure. Calculated EC50 and EC90 values are shown at the bottom of each figure.
圖26 展示使用VSV假病毒之藉由某些單株抗體中和SARS-CoV-2感染。資料來自一個單一實驗,成一式三份孔VSV-luc(刺突蛋白D19)假病毒。「LS」=Fc突變M428L+N434S。 Figure 26 shows neutralization of SARS-CoV-2 infection by certain monoclonal antibodies using VSV pseudovirus. Data are from a single experiment in triplicate wells with VSV-luc (Spike protein D19) pseudovirus. "LS"=Fc mutation M428L+N434S.
圖27 展示藉由某些單株抗體中和活SARS-CoV-2引起之感染。資料來自一式三份孔SARS-CoV-2-luc,MOI 0.1,6h感染。 Figure 27 shows the neutralization of infection by live SARS-CoV-2 by certain monoclonal antibodies. Data are from triplicate wells SARS-CoV-2-luc, MOI 0.1, 6h infection.
圖28A 及28B 展示藉由某些抗體活化FcγRIIIa (V158對偶基因) (圖28A)及FcγRIIa (H131對偶基因) (圖28B)。資料展示使用表現SARS CoV2 S蛋白之CHO目標細胞的實驗。 Figures 28A and 28B show activation of FcyRIIIa (V158 counterpart) (Figure 28A) and FcyRIIa (H131 counterpart) (Figure 28B) by certain antibodies. Data show experiments using CHO target cells expressing the SARS CoV2 S protein.
圖29A 及29B 展示某些抗體與SARS-CoV-2 RBD及刺突蛋白之結合(ELISA)。 Figures 29A and 29B show binding of certain antibodies to SARS-CoV-2 RBD and Spike protein (ELISA).
圖30A 及30B 展示針對SARS-CoV-2 RBD、SARS-CoV-2 S蛋白及SARS-CoV-1 RBD之某些抗體的結合。 Figures 30A and 30B show binding of certain antibodies against SARS-CoV-2 RBD, SARS-CoV-2 S protein and SARS-CoV-1 RBD.
圖31A 及31B 展示在不同濃度之AAPH (2,2'-偶氮雙(2-甲脒基丙烷)二鹽酸鹽)存在下或在UV照射之後抗體S2D106與SARS-CoV-2 RBD之結合。AAPH及UV輻射二者用於在抗體中誘導氧化應力。圖31A展示如藉由間接ELISA所量測之S2D106與RBD之結合。圖31B展示如藉由夾心ELISA所量測之S2D106的結合;x軸=RBD之濃度。 Figures 31A and 31B show the binding of antibody S2D106 to SARS-CoV-2 RBD in the presence of various concentrations of AAPH (2,2'-azobis(2-carbamidinopropane) dihydrochloride) or after UV irradiation . Both AAPH and UV radiation were used to induce oxidative stress in antibodies. Figure 31A shows the binding of S2D106 to RBD as measured by indirect ELISA. Figure 31B shows binding of S2D106 as measured by sandwich ELISA; x-axis = concentration of RBD.
圖32A-32C 展示藉由S2E12及其經工程化變異體(關於S2E12抗體之VH及VL序列參見實例9中之表22)之感染(假病毒粒子)的中和。圖32A及圖32B展示來自相同實驗之二次重複的結果。圖32C展示使用S2E12及其其他變異體之第三實驗的結果。 32A-32C show neutralization of infection (pseudovirions) by S2E12 and its engineered variants (see Table 22 in Example 9 for the VH and VL sequences of the S2E12 antibody). Figures 32A and 32B show results from two replicates of the same experiment. Figure 32C shows the results of a third experiment using S2E12 and its other variants.
圖33A 及33B 展示如藉由間接ELISA所量測之某些抗體與SARS-CoV-2 RBD的結合。圖33A展示八個抗體之結果。圖33B展示來自六個抗體之雙重複實驗之結果的平均值。 Figures 33A and 33B show binding of certain antibodies to SARS-CoV-2 RBD as measured by indirect ELISA. Figure 33A shows the results for eight antibodies. Figure 33B shows the mean of results from double replicate experiments of six antibodies.
圖34A 及34B 展示如藉由夾心ELISA所量測之某些抗體與SARS-CoV-2 RBD的結合。圖34A展示八個抗體之結果。圖34B展示來自六個抗體之雙重複實驗之結果的平均值。 Figures 34A and 34B show the binding of certain antibodies to SARS-CoV-2 RBD as measured by sandwich ELISA. Figure 34A shows the results for eight antibodies. Figure 34B shows the mean of results from double replicate experiments of six antibodies.
圖35 展示使用活SARS-CoV-2病毒藉由五個抗體之感染的中和。使用存在於經轉型以表現S2E12抗體之CHO細胞之上清液中之抗體產生標記為「S2E12-11」之曲線。使用經轉型HEK細胞中產生之純化的抗體產生標記為「S2E12 wt」之曲線。 Figure 35 shows neutralization of infection by five antibodies using live SARS-CoV-2 virus. The curve labeled "S2E12-11" was generated using the antibody present in the supernatant of CHO cells transformed to express the S2E12 antibody. A curve labeled "S2E12 wt" was generated using purified antibody produced in transformed HEK cells.
圖36 展示某些抗體與表現於CHO細胞之表面上之SARS-CoV-2刺突蛋白的結合,如藉由流式細胞測量術所量測。各抗體之所計算的EC50值展示於各抗體名稱右側的圖例中。使用存在於經轉型以表現S2E12抗體之CHO細胞之上清液中之抗體產生標記為「S2E12-11」之曲線。使用經轉型HEK細胞中產生之純化的抗體產生標記為「S2E12」之曲線。 Figure 36 shows the binding of certain antibodies to the SARS-CoV-2 spike protein expressed on the surface of CHO cells, as measured by flow cytometry. Calculated EC50 values for each antibody are shown in the legend to the right of each antibody name. The curve labeled "S2E12-11" was generated using the antibody present in the supernatant of CHO cells transformed to express the S2E12 antibody. A curve labeled "S2E12" was generated using purified antibody produced in transformed HEK cells.
圖37A 及37B 展示使用假病毒粒子藉由某些單株抗體之感染的中和。圖37A及圖37B展示來自相同實驗之二次重複的結果。 Figures 37A and 37B show neutralization of infection by certain monoclonal antibodies using pseudovirions. Figures 37A and 37B show results from two replicates of the same experiment.
圖38A 及38B 展示某些抗體與SARS-CoV-2 RBD之結合。亦展示比較抗體S309-14 (具有VH W105F突變之S309,具有類似於S309之與RBD之親和力)之結合。圖38A展示如藉由間接ELISA所量測之結合。圖38B展示如藉由夾心ELISA所量測之結合。圖38A及38B中之每一者展示來自雙重複實驗之結果的平均值。 Figures 38A and 38B show binding of certain antibodies to the SARS-CoV-2 RBD. Also shown is the binding of the comparative antibody S309-14 (S309 with the VH W105F mutation, with an affinity for RBD similar to that of S309). Figure 38A shows binding as measured by indirect ELISA. Figure 38B shows binding as measured by sandwich ELISA. Each of Figures 38A and 38B shows the mean of results from double replicate experiments.
圖39A 及39B 展示某些經工程化S2E12抗體與親體單株抗體S2E12 (S2E12值,指示為y軸上之「WT」)相比之特徵。使用各圖右側圖例中所列之分析產生比較資料。 Figures 39A and 39B show the characteristics of certain engineered S2E12 antibodies compared to the parental monoclonal antibody S2E12 (S2E12 values, indicated as "WT" on the y-axis). Comparative data were generated using the analyses listed in the legend to the right of each figure.
圖40 展示某些經工程化S2D106抗體與親體單株抗體S2D106 (S2D106值,指示為y軸上之「WT」)相比之特徵。使用各圖右側圖例中所列之分析產生比較資料。 Figure 40 shows the characteristics of certain engineered S2D106 antibodies compared to the parental monoclonal antibody S2D106 (S2D106 values, indicated as "WT" on the y-axis). Comparative data were generated using the analyses listed in the legend to the right of each figure.
圖41 展示經工程化以過度表現所指示蛋白質之HEK293T細胞中之DC-SIGN/L-SIGN、DC-SIGN及ACE2轉殖基因的表現(免疫螢光)。參見實例14。 Figure 41 shows the expression (immunofluorescence) of DC-SIGN/L-SIGN, DC-SIGN and ACE2 transgenic genes in HEK293T cells engineered to overexpress the indicated proteins. See Example 14.
圖42 展示在野生型HEK293T細胞中及經工程化以過度表現DC-SIGN、L-SIGN或ACE2之HEK293T細胞中之VSV假病毒感染位準。假病毒表現具有螢光素酶報導子之重組SARS-CoV-2刺突蛋白。參見實例14。 Figure 42 shows the level of VSV pseudovirus infection in wild-type HEK293T cells and HEK293T cells engineered to overexpress DC-SIGN, L-SIGN or ACE2. The pseudovirus expresses a recombinant SARS-CoV-2 spike protein with a luciferase reporter. See Example 14.
圖43 展示在經工程化以過度表現DC-SIGN、L-SIGN或ACE2之HEK293T細胞中藉由VSV假病毒感染之單株抗體S309 (SEQ ID NO.:139之VH,SEQ ID NO.:143之VL)的中和。在此實例中,抗體S309包括M428L及N434S Fc突變。參見實例14。 Figure 43 shows infection of monoclonal antibody S309 by VSV pseudovirus in HEK293T cells engineered to overexpress DC-SIGN, L-SIGN or ACE2 (VH of SEQ ID NO.:139, SEQ ID NO.:143 the neutralization of VL). In this example, antibody S309 includes the M428L and N434S Fc mutations. See Example 14.
圖44 展示在野生型HEK293T細胞中及經工程化以過度表現DC-SIGN、L-SIGN或ACE2之HEK293T細胞中之活SARS-CoV-2引起之感染位準。使用具有螢光素酶報導子之重組S蛋白確定感染。參見實例14。 Figure 44 shows the level of infection by live SARS-CoV-2 in wild-type HEK293T cells and HEK293T cells engineered to overexpress DC-SIGN, L-SIGN or ACE2. Infection was determined using recombinant S protein with a luciferase reporter. See Example 14.
圖45 展示在經工程化以過度表現DC-SIGN、L-SIGN或ACE2之HEK293T細胞中藉由活SARS-CoV-2引起之感染之單株抗體S309 (SEQ ID NO.:139之VH,SEQ ID NO.:143之VL)的中和。在此實例中,抗體S309包括M428L及N434S Fc突變。參見實例14。 Figure 45 shows infection by live SARS-CoV-2 in HEK293T cells engineered to overexpress DC-SIGN, L-SIGN or ACE2, monoclonal antibody S309 (VH of SEQ ID NO.: 139, SEQ ID NO.: 139) Neutralization of VL) of ID NO.: 143. In this example, antibody S309 includes the M428L and N434S Fc mutations. See Example 14.
圖46 展示經工程化以過度表現所指示蛋白質之HEK293T細胞中之DC-SIGN/L-SIGN、DC-SIGN、SIGLEC1及ACE2轉殖基因的表現(免疫螢光)。參見實例14。 Figure 46 shows the expression (immunofluorescence) of DC-SIGN/L-SIGN, DC-SIGN, SIGLECl and ACE2 transgenic genes in HEK293T cells engineered to overexpress the indicated proteins. See Example 14.
圖47 展示在野生型HEK293T細胞中及經工程化以過度表現DC-SIGN、L-SIGN、SIGLEC-1或ACE2之HEK293T細胞中之活SARS-CoV-2引起之感染位準。使用具有螢光素酶報導子之重組S蛋白確定感染。參見實例14。 Figure 47 shows the level of infection by live SARS-CoV-2 in wild-type HEK293T cells and HEK293T cells engineered to overexpress DC-SIGN, L-SIGN, SIGLEC-1 or ACE2. Infection was determined using recombinant S protein with a luciferase reporter. See Example 14.
圖48 展示在經工程化以過度表現DC-SIGN、L-SIGN、SIGLEC-1或ACE2之HEK293T細胞中藉由活SARS-CoV-2引起之感染之單株抗體S309 (SEQ ID NO.:139之VH,SEQ ID NO.:143之VL)的中和。在此實例中,抗體S309包括M428L及N434S Fc突變。參見實例14。 Figure 48 shows monoclonal antibody S309 (SEQ ID NO.: 139) of infection by live SARS-CoV-2 in HEK293T cells engineered to overexpress DC-SIGN, L-SIGN, SIGLEC-1 or ACE2 Neutralization of VH of SEQ ID NO.: 143 of VL). In this example, antibody S309 includes the M428L and N434S Fc mutations. See Example 14.
圖49 展示在經工程化以過度表現DC-SIGN、L-SIGN、SIGLEC-1或ACE2之HEK293T細胞中藉由活SARS-CoV-2引起之感染之單株抗體S2E12-LS (SEQ ID NO.:399之VH,SEQ ID NO.:403之VL,具有M428L/N434S Fc突變)的中和。在此實例中,抗體S2E12包括M428L及N434S Fc突變。參見實例14。 Figure 49 shows the monoclonal antibody S2E12-LS (SEQ ID NO. : VH of 399, VL of SEQ ID NO.: 403, neutralization with M428L/N434S Fc mutation). In this example, antibody S2E12 includes the M428L and N434S Fc mutations. See Example 14.
圖50A 及50B 展示在若干細胞類型中包括CD209 (DC-SIGN)之受體蛋白質及SIGLEC蛋白質的表現分析。點的大小與表現蛋白質之所指示類型之細胞的百分比相關,且點陰影的強度與蛋白質之表現位準相關。參見實例14。 Figures 50A and 50B show expression analysis of receptor proteins including CD209 (DC-SIGN) and SIGLEC proteins in several cell types. The size of the dots is related to the percentage of cells of the indicated type expressing the protein, and the intensity of the dot shading is related to the level of protein expression. See Example 14.
圖51 展示藉由在HEK293T細胞(「親體」)中或穩定地表現DC-SIGN、L-SIGN、SIGLEC-1或ACE2之HEK293T細胞中之表現N-螢光素酶之活SARS-CoV-2的感染。資料表示在三次感染倍率(MOI)下測試SARS-CoV-2之實驗。參見實例14。 Figure 51 shows live SARS-CoV-2 by expression of N-luciferase in HEK293T cells ("parent") or in HEK293T cells stably expressing DC-SIGN, L-SIGN, SIGLEC-1 or ACE2 infection. Data represent experiments testing SARS-CoV-2 at three multiples of infection (MOI). See Example 14.
圖52 展示藉由短暫地經慢病毒轉導以表現DC-SIGN、L-SIGN、SIGLEC-1或ACE2之HEK293T細胞、HeLa細胞及MRC5細胞中之SARS-CoV-2假模式化VSV的感染。未感染細胞展示為陰性對照。參見實例14。 Figure 52 shows infection by SARS-CoV-2 pseudo-patterned VSV in HEK293T cells, HeLa cells and MRC5 cells transiently transduced with lentivirus to express DC-SIGN, L-SIGN, SIGLEC-1 or ACE2. Uninfected cells are shown as negative controls. See Example 14.
圖53
展示藉由S2E12之感染的中和。使一組7個細胞株(HeLa、293T (wt)、Vero E6、Huh7、293T ACE2、MRC 5-ACE2-TMPRSS2、A549-ACE2-TMPRSS2純系5、A549-ACE2-TMPRSS2純系10)在S2E12存在下經SARS-CoV-2-Nluc感染。螢光素酶訊號在感染後24 h定量。 Figure 53 shows neutralization of infection by S2E12. A panel of 7 cell lines (HeLa, 293T (wt), Vero E6, Huh7, 293T ACE2, MRC 5-ACE2-TMPRSS2, A549-ACE2-
圖 54
展示藉由S2E12之感染的中和。使一組7個細胞株(HeLa、293T (wt)、Vero E6、Huh7、293T ACE2、MRC 5-ACE2-TMPRSS2、A549-ACE2-TMPRSS2純系5、A549-ACE2-TMPRSS2純系10)在S2E12-LS存在下用經SARS-CoV-2刺突蛋白假模式化之VSV感染。螢光素酶訊號在感染後24 h定量。 Figure 54 shows neutralization of infection by S2E12. A set of 7 cell lines (HeLa, 293T (wt), Vero E6, Huh7, 293T ACE2, MRC 5-ACE2-TMPRSS2, A549-ACE2-
圖 55 展示如藉由流式細胞測量術定量之純化的螢光標記之SARS-CoV-2刺突蛋白與7個細胞株中之每一者的結合。HeLa及239T WT細胞已具有最低MFI,接著Huh7及VeroE6細胞。293T ACE2細胞(最高)、MRC 5-ACE2-TMPRSS2 (第三高)、A549-ACE2-TMPRSS2純系5 (第四高)及A549-ACE2-TMPRSS2純系10 (第二高)具有更高MFI。 Figure 55 shows the binding of purified fluorescently labeled SARS-CoV-2 spike protein to each of the seven cell lines as quantified by flow cytometry. HeLa and 239T WT cells already had the lowest MFI, followed by Huh7 and VeroE6 cells. 293T ACE2 cells (highest), MRC 5-ACE2-TMPRSS2 (third highest), A549-ACE2-TMPRSS2 clone 5 (fourth highest) and A549-ACE2-TMPRSS2 clone 10 (second highest) had higher MFIs.
圖 56A 及 56B
展示S309 (VH SEQ ID NO.:139;VL SEQ ID NO.:143)或S309與S2E12-LS之組合二者提供針對SARS-CoV-2攻擊之穩固的活體內保護。在用SARS-CoV-2鼻內攻擊之前48小時,向敘利亞倉鼠注射所指示量之mAb。圖56A頂列展示感染後4天肺中之病毒RNA的定量。圖56A中間列展示使用TCID50分析在感染後4天收穫的肺勻漿中複製病毒的定量。圖56A底部列展示在感染後4天評定之肺組織的組織學評分。圖56B展示在感染(第0天)之前在血清中量測之mAb濃度與在感染後4天肺中之病毒RNA負荷成反比。參見實例14。 Figures 56A and 56B show that both S309 (VH SEQ ID NO.: 139; VL SEQ ID NO.: 143) or the combination of S309 and S2E12-LS provide robust in vivo protection against SARS-CoV-2 challenge. Syrian hamsters were injected with the indicated amounts of
圖57 展示經轉染以過度表現ACE2或一組所選凝集素及受體候選物中之一者的HEK293T細胞藉由VSV-SARS-CoV-2假病毒引起之感染。 Figure 57 shows infection by VSV-SARS-CoV-2 pseudovirus of HEK293T cells transfected to overexpress ACE2 or one of a panel of selected lectin and receptor candidates.
圖58 展示過度表現DC-SIGN、L-SIGN、SIGLEC-1或ACE2之穩定的HEK293T細胞株的顯微照片,該等細胞株經可靠SARS-CoV-2 (MOI為0.1)轉染,隨後固定且針對SARS-CoV-2核蛋白(紅色)進行免疫染色24小時。 Figure 58 shows photomicrographs of stable HEK293T cell lines overexpressing DC-SIGN, L-SIGN, SIGLEC-1 or ACE2 transfected with authentic SARS-CoV-2 (MOI of 0.1) followed by fixation and immunostained for SARS-CoV-2 nucleoprotein (red) for 24 hours.
圖59 展示過度表現DC-SIGN、L-SIGN、SIGLEC-1或ACE2之穩定的HEK293T細胞株中之螢光素酶位準之定量,如在用SARS-CoV-2-Nluc感染之後24小時所量測。 Figure 59 shows quantification of luciferase levels in stable HEK293T cell lines overexpressing DC-SIGN, L-SIGN, SIGLEC-1 or ACE2, as 24 hours after infection with SARS-CoV-2-Nluc Measure.
圖60 展示在與不同濃度之抗SIGLEC1單株抗體(純系7-239)一起培育且用SARS-CoV-2-Nluc感染之後,過度表現DC-SIGN、L-SIGN、SIGLEC-1或ACE2之穩定的HEK293T細胞株中之螢光素酶位準之定量。 Figure 60 shows stabilization of overexpressed DC-SIGN, L-SIGN, SIGLEC-1 or ACE2 following incubation with various concentrations of anti-SIGLEC1 monoclonal antibody (clone 7-239) and infection with SARS-CoV-2-Nluc Quantification of luciferase levels in HEK293T cell line.
圖61 展示經短暫轉導以過度表現DC-SIGN、L-SIGN、SIGLEC-1或ACE2之細胞藉由VSV-SARS-CoV-2假病毒引起之感染。展示HEK293T細胞(左側圖)、HeLa細胞(中間圖)及MRC5細胞(右側圖)之結果。 Figure 61 shows infection by VSV-SARS-CoV-2 pseudovirus of cells transiently transduced to overexpress DC-SIGN, L-SIGN, SIGLEC-1 or ACE2. Results are shown for HEK293T cells (left panel), HeLa cells (middle panel) and MRC5 cells (right panel).
圖62 展示在用ACE2 siRNA處理,接著用VSV-SARS-CoV-2假病毒感染後過度表現DC-SIGN、L-SIGN、SIGLEC-1或ACE2之穩定的HEK293T細胞株之感染。 Figure 62 shows infection of stable HEK293T cell lines overexpressing DC-SIGN, L-SIGN, SIGLEC-1 or ACE2 following treatment with ACE2 siRNA followed by infection with VSV-SARS-CoV-2 pseudovirus.
圖63 展示在用不同濃度之抗ACE2抗體(多株血清)處理,接著用VSV-SARS-CoV-2假病毒感染後過度表現DC-SIGN、L-SIGN、SIGLEC-1或ACE2之穩定的HEK293T細胞株之感染。 Figure 63 shows stable HEK293T overexpressing DC-SIGN, L-SIGN, SIGLEC-1 or ACE2 following treatment with different concentrations of anti-ACE2 antibodies (polyclonal serum) followed by infection with VSV-SARS-CoV-2 pseudovirus Infection of cell lines.
圖64 展示人類肺細胞圖譜中之ACE2、DC-SIGN (CD209)、L-SIGN (CLEC4M)及SIGLEC1之分佈及表現。 Figure 64 shows the distribution and representation of ACE2, DC-SIGN (CD209), L-SIGN (CLEC4M) and SIGLEC1 in the Human Lung Cell Atlas.
圖65 展示在重度COVID-19患者之支氣管肺泡灌洗液或痰液中具有可偵測SARS-CoV-2基因體之主要細胞類型的分析。單一細胞基因表現譜繪示為t-SNE (t-分佈隨機鄰域嵌入)曲線,其藉由細胞類型染色且藉由病毒負荷設定大小。 Figure 65 shows the analysis of the major cell types with detectable SARS-CoV-2 gene bodies in bronchoalveolar lavage fluid or sputum from severe COVID-19 patients. Single-cell gene expression profiles are shown as t-SNE (t-distributed stochastic neighborhood embedding) curves, stained by cell type and sized by viral load.
圖66 展示在重度COVID-19患者之支氣管肺泡灌洗液或痰液中具有可偵測SARS-CoV-2基因體之主要細胞類型的分析。展示所指示細胞類型中之每一者之細胞累積分數(y軸),其中所偵測之病毒RNA/細胞達至相對應的logCPM (log(計數/百萬);x軸)。 Figure 66 shows analysis of major cell types with detectable SARS-CoV-2 gene bodies in bronchoalveolar lavage fluid or sputum from severe COVID-19 patients. The cumulative fraction of cells (y-axis) for each of the indicated cell types is shown with viral RNA/cell detected to the corresponding logCPM (log(counts/million); x-axis).
圖67 展示具有針對x軸上所示之受體基因及y軸上所示之SARS-CoV-2+細胞類型的所偵測之轉錄物之細胞計數的熱圖矩陣。來自八名個體之總n=3,085個細胞。參見Ren, X.等人,COVID-19 immune features revealed by a large-scale single cell transcriptome atlas. Cell, doi:10.1016/j.cell.2021.01.053 (2021)。 Figure 67 shows a heatmap matrix with cell counts for the receptor genes shown on the x-axis and transcripts detected for the SARS-CoV-2+ cell type shown on the y-axis. Total n=3,085 cells from eight individuals. See Ren, X. et al., COVID-19 immune features revealed by a large-scale single cell transcriptome atlas. Cell, doi: 10.1016/j.cell.2021.01.053 (2021).
圖68 展示在巨噬細胞中及在分泌細胞中受體轉錄物計數(各曲線之y軸)與SARS-CoV-2 RNA計數(各曲線之x軸)的相關性。相關性係基於來自Ren等人之對數轉換前的計數。 Figure 68 shows the correlation of receptor transcript counts (y-axis of each curve) and SARS-CoV-2 RNA counts (x-axis of each curve) in macrophages and in secretory cells. Correlations are based on pre-log-transformed counts from Ren et al.
圖69 右側展示了經VSV-SARS-CoV-2反感染之結果。反感染過程之示意圖展示於左側圖中。使經DC-SIGN、L-SIGN或SIGLEC1轉導之HeLa細胞與VSV-SARS-CoV-2一起培育,充分洗滌且與Vero-E6-TMPRSS2敏感性目標細胞共培養。在存在或不存在目標細胞下之結果展示於右側圖中。The right side of Figure 69 shows the results of counter-infection with VSV-SARS-CoV-2. A schematic diagram of the anti-infection process is shown in the left panel. HeLa cells transduced with DC-SIGN, L-SIGN or SIGLEC1 were incubated with VSV-SARS-CoV-2, washed extensively and co-cultured with Vero-E6-TMPRSS2 sensitive target cells. Results in the presence or absence of target cells are shown in the right panel.
圖70 展示反感染之結果,其中在存在或不存在抗SIGLEC1阻斷抗體下進行VSV-SARS-CoV-2病毒吸收。 Figure 70 shows the results of counterinfection with VSV-SARS-CoV-2 viral uptake in the presence or absence of anti-SIGLEC1 blocking antibodies.
圖71 展示藉由抗體S309、S2E12-LS及S2X33之Vero-E6細胞之SARS-CoV-2感染的中和。S2E12-LS包含SEQ ID NO:399之VH序列及SEQ ID NO:403之VL序列及Fc中之M428L/N434S。 Figure 71 shows neutralization of SARS-CoV-2 infection of Vero-E6 cells by antibodies S309, S2E12-LS and S2X33. S2E12-LS comprises the VH sequence of SEQ ID NO:399 and the VL sequence of SEQ ID NO:403 and M428L/N434S in Fc.
圖72 展示藉由抗體S309、S2E12-LS及S2X33之Vero-E6-TMPRSS2細胞之SARS-CoV-2感染的中和。 Figure 72 shows neutralization of SARS-CoV-2 infection of Vero-E6-TMPRSS2 cells by antibodies S309, S2E12-LS and S2X33.
圖73 展示如藉由流式細胞測量術所量測,純化的螢光標記之SARS-CoV-2刺突蛋白或RBD與所指示之細胞株的結合的定量。「A」指示過度表現ACE2之細胞株;「T」指示過度表現TMPRSS2之細胞株。 Figure 73 shows quantification of the binding of purified fluorescently labeled SARS-CoV-2 spike protein or RBD to the indicated cell lines as measured by flow cytometry. "A" indicates a cell line overexpressing ACE2; "T" indicates a cell line overexpressing TMPRSS2.
圖74 展示如藉由RT-qPCR所量測,所指示之細胞株中細胞ACE2及TMPRSS2轉錄物的定量。「A」指示過度表現ACE2之細胞株;「T」指示過度表現TMPRSS2之細胞株。 Figure 74 shows quantification of cellular ACE2 and TMPRSS2 transcripts in the indicated cell lines as measured by RT-qPCR. "A" indicates a cell line overexpressing ACE2; "T" indicates a cell line overexpressing TMPRSS2.
圖75 展示藉由抗體S309、S2E12-LS或S2X333之SARS-CoV-2-Nluc感染的中和。測試所指示七個細胞株中之每一者。螢光素酶訊號在感染後24小時定量。 Figure 75 shows neutralization of SARS-CoV-2-Nluc infection by antibodies S309, S2E12-LS or S2X333. Each of the seven indicated cell lines was tested. Luciferase signal was quantified 24 hours after infection.
圖76 展示藉由抗體S309、S2E12-LS或S2X333之VSV-SARS-CoV-2假病毒感染的中和。測試所指示七個細胞株中之每一者。螢光素酶訊號在感染後24小時定量。 Figure 76 shows neutralization of VSV-SARS-CoV-2 pseudovirus infection by antibodies S309, S2E12-LS or S2X333. Each of the seven indicated cell lines was tested. Luciferase signal was quantified 24 hours after infection.
圖77 展示如藉由免疫螢光所量測,在不存在(上圖)或存在(下圖) 5 µg/ml之抗體S2E12-LS下質膜上之表現SARS-CoV-2 S蛋白(CHO-S)之CHO細胞的細胞-細胞融合。細胞核用Hoechst染料染色;細胞質用CellTracker綠色染色。 Figure 77 shows expression of SARS-CoV-2 S protein (CHO) on the plasma membrane in the absence (upper panel) or presence (lower panel) of 5 µg/ml of antibody S2E12-LS, as measured by immunofluorescence -S) Cell-cell fusion of CHO cells. Nuclei were stained with Hoechst dye; cytoplasm was stained with CellTracker green.
圖78
展示由不同刺突蛋白-特異性抗體介導之CHO-S細胞-細胞融合。使用Cytation 5 Imager (BioTek)及將細胞核偵測作為對象且量測其大小的對象偵測方案定量融合。稠合細胞中之對象的面積除以所有對象之總面積乘以100得到稠合細胞之百分比。 Figure 78 shows CHO-S cell-cell fusion mediated by different Spike-specific antibodies. Fusion was quantified using a
圖79 展示藉由15 µg/ml所指示之抗體抑制CHO-S細胞之S2E12-LS誘導之細胞-細胞融合。 Figure 79 shows inhibition of S2E12-LS-induced cell-cell fusion of CHO-S cells by 15 μg/ml of the indicated antibodies.
圖80 展示在不存在ACE2之情況下具有經螢光標記之S陰性CHO細胞的S陽性CHO-S細胞之S2E12-LS誘導之單向融合(亦稱為反融合)。細胞核用Hoechst染料染色;細胞質用CellTracker綠色染色。 Figure 80 shows S2E12-LS-induced unidirectional fusion (also known as anti-fusion) of S-positive CHO-S cells with fluorescently labeled S-negative CHO cells in the absence of ACE2. Nuclei were stained with Hoechst dye; cytoplasm was stained with CellTracker green.
圖81 展示藉由與所指示抗體一起預培育之可靠SARS-CoV-2中和過度表現ACE2之穩定的HEK293T細胞株之感染。在24小時時藉由免疫染色來量測SARS-CoV-2核蛋白之感染。 Figure 81 shows infection of a stable HEK293T cell line overexpressing ACE2 neutralized by reliable SARS-CoV-2 preincubation with the indicated antibodies. SARS-CoV-2 nucleoprotein infection was measured by immunostaining at 24 hours.
圖82 展示藉由與所指示抗體一起預培育之可靠SARS-CoV-2中和過度表現SIGLEC1之穩定的HEK293T細胞株之感染。在24小時時藉由免疫染色來量測SARS-CoV-2核蛋白之感染。 Figure 82 shows infection of a stable HEK293T cell line overexpressing SIGLEC1 neutralized by reliable SARS-CoV-2 preincubation with the indicated antibodies. SARS-CoV-2 nucleoprotein infection was measured by immunostaining at 24 hours.
圖 83 展示藉由與所指示抗體一起預培育之可靠SARS-CoV-2中和過度表現DC-SIGN之穩定的HEK293T細胞株之感染。在24小時時藉由免疫染色來量測SARS-CoV-2核蛋白之感染。 Figure 83 shows infection by robust SARS-CoV-2 neutralization of DC-SIGN overexpressing stable HEK293T cell line preincubated with the indicated antibodies. SARS-CoV-2 nucleoprotein infection was measured by immunostaining at 24 hours.
圖 84 展示藉由與所指示抗體一起預培育之可靠SARS-CoV-2中和過度表現L-SIGN之穩定的HEK293T細胞株之感染。在24小時時藉由免疫染色來量測SARS-CoV-2核蛋白之感染。 Figure 84 shows the neutralization of infection of a stable HEK293T cell line overexpressing L-SIGN by reliable SARS-CoV-2 preincubation with the indicated antibodies. SARS-CoV-2 nucleoprotein infection was measured by immunostaining at 24 hours.
圖 85 展示不同類別之刺突蛋白-特異性抗體之作用機制的概述。「融合抑制」係指CHO-S細胞與ACE2+ Vero-E6細胞之間的抗體介導之融合抑制。效應功能之評定係基於人類FcγR之抗體依賴性活化,如使用生物發光報導子分析所量測。RBM Ia-IIa抗體包括S2E12、S2X259、S2X58、S2D106、Ly-CoV016、CT-P59及REGN10933。RBM Ib抗體包括Ly-CoV555、REGN10987及S2M11。NTD抗體包括S2X333。幹螺旋抗體包括S2P6。 Figure 85 shows an overview of the mechanism of action of different classes of Spike-specific antibodies. "Inhibition of fusion" refers to inhibition of antibody-mediated fusion between CHO-S cells and ACE2+ Vero-E6 cells. Assessment of effector function is based on antibody-dependent activation of human FcγRs, as measured using a bioluminescent reporter assay. RBM Ia-IIa antibodies include S2E12, S2X259, S2X58, S2D106, Ly-CoV016, CT-P59 and REGN10933. RBM Ib antibodies include Ly-CoV555, REGN10987 and S2M11. NTD antibodies include S2X333. Dry helix antibodies include S2P6.
圖 86 展示如藉由流式細胞測量術所量測,在穩定地過度表現對應的黏附受體之HEK293T細胞上靶向DC/L-SIGN、DC-SIGN、SIGLEC1或ACE2之抗體之結合的分析。 Figure 86 shows analysis of binding of antibodies targeting DC/L-SIGN, DC-SIGN, SIGLEC1 or ACE2 on HEK293T cells stably overexpressing the corresponding adhesion receptors, as measured by flow cytometry .
圖 87 展示如藉由免疫螢光所量測,在穩定地過度表現對應的黏附受體之HEK293T細胞上靶向DC/L-SIGN、DC-SIGN、SIGLEC1或ACE2之抗體之結合的分析。 Figure 87 shows analysis of binding of antibodies targeting DC/L-SIGN, DC-SIGN, SIGLECl or ACE2 on HEK293T cells stably overexpressing the corresponding adhesion receptors, as measured by immunofluorescence.
圖 88 展示穩定地過度表現所指示之黏附受體HEK293T細胞藉由經野生型刺突蛋白(灰色條)假模式化之VSV-SARS-CoV-2或經攜帶B1.1.7譜系之突變的刺突蛋白(紅色條)假模式化之VSV-SARS-CoV-2的感染。感染後一天分析發光。 Figure 88 shows that the indicated adhesion receptor HEK293T cells were stably overexpressed by VSV-SARS-CoV-2 pseudopatterned with wild-type Spike protein (grey bars) or by spikes carrying mutations of the B1.1.7 lineage Protein (red bars) pseudo-patterned infection with VSV-SARS-CoV-2. Luminescence was analyzed one day after infection.
圖 89 展示藉由10 µg/ml S309、S2E12-v2及S2X333中和Vero-E6或Vero-E6-TMPRSS2細胞之SARS-CoV-2感染。細胞在所指示抗體存在下經SARS-CoV-2 (分離株USA-WA1/2020)在MOI 0.01下感染。感染後24 h固定細胞,且對病毒核衣殼蛋白免疫染色。 Figure 89 shows neutralization of SARS-CoV-2 infection of Vero-E6 or Vero-E6-TMPRSS2 cells by 10 μg/ml S309, S2E12-v2 and S2X333. Cells were infected with SARS-CoV-2 (isolate USA-WA1/2020) at MOI 0.01 in the presence of the indicated antibodies. Cells were fixed 24 h after infection and immunostained for viral nucleocapsid proteins.
圖 90 展示如藉由流式細胞測量術所量測,純化的螢光標記之SARS-CoV-2刺突蛋白(左側圖)或RBD (右側圖)與所指示之細胞株的結合的定量。 Figure 90 shows quantification of the binding of purified fluorescently labeled SARS-CoV-2 spike protein (left panel) or RBD (right panel) to the indicated cell lines as measured by flow cytometry.
圖 91 展示如藉由流式細胞測量術所量測,純化的螢光標記之SARS-CoV-2刺突蛋白(左側圖)或RBD (右側圖)與所指示之細胞株的結合的定量。 Figure 91 shows quantification of the binding of purified fluorescently labeled SARS-CoV-2 spike protein (left panel) or RBD (right panel) to the indicated cell lines as measured by flow cytometry.
圖92 展示在敘利亞倉鼠中針對SARS-CoV-2攻擊之抗體S309 (左側圖)或抗體S309及S2E12-v2之組合(右側圖)之保護效應的分析。上圖展示在感染後四天肺中之病毒RNA的定量。下圖展示使用TCID50分析在感染後四天收穫之肺勻漿中之複製病毒的定量。 Figure 92 shows analysis of the protective effect of antibody S309 (left panel) or the combination of antibodies S309 and S2E12-v2 (right panel) against SARS-CoV-2 challenge in Syrian hamsters. The upper panel shows the quantification of viral RNA in the lungs four days post infection. The lower panel shows the quantification of replicating virus in lung homogenates harvested four days post infection using TCID50 analysis.
圖93 展示在敘利亞倉鼠中針對SARS-CoV-2攻擊之抗體S309 (左側圖)或抗體S309及S2E12-LS之組合(右側圖)之保護效應的分析。上圖展示感染後四天所評定之肺組織的組織病理學評分。下圖展示基於在感染時量測之血清抗體(x軸)的位準與在感染後第四天在肺(y軸)中量測之SARS-CoV-2病毒RNA的位準之間的相關性的功效圖。點線表示針對病毒降低之EC50及EC90。單獨S309之EC90為9 µg/ml;S309+S2E12-v2之EC90為11 µg/ml。 Figure 93 shows analysis of the protective effect of antibody S309 (left panel) or the combination of antibodies S309 and S2E12-LS (right panel) against SARS-CoV-2 challenge in Syrian hamsters. The upper panel shows the histopathological score of lung tissue assessed four days post-infection. The graph below shows the correlation between the level of SARS-CoV-2 viral RNA measured in the lung (y-axis) based on the level of serum antibodies measured at the time of infection (x-axis) and the fourth day post-infection Sexual Efficacy Chart. Dotted lines represent EC50 and EC90 for virus reduction. The EC90 of S309 alone is 9 µg/ml; the EC90 of S309+S2E12-v2 is 11 µg/ml.
圖94 展示免疫複合體與倉鼠脾細胞之結合。滴定Alexa-488螢光免疫複合體(IC) (0-200 nM範圍)且與總未處理倉鼠脾細胞一起培育。在排除死亡/凋亡細胞且對真正單核球群體實體門控時用細胞計數器揭露結合。左側圖展示與用倉鼠或人類Fc抗體皮內製得之倉鼠細胞相關的螢光強度(人類S309展示為綠色;GH-S309展示為深灰色;GH-S309-N297A展示為藍色)。展示二個之單次重複。右側圖展示在整個單核球群體上量測之複本的相對Alexa-488平均螢光強度。 Figure 94 shows binding of immune complexes to hamster splenocytes. Alexa-488 fluorescent immune complexes (IC) (0-200 nM range) were titrated and incubated with total untreated hamster splenocytes. Binding was uncovered with a cytometer when dead/apoptotic cells were excluded and gated on true monocyte population entities. The left panel shows the fluorescence intensities associated with hamster cells made intradermally with hamster or human Fc antibodies (human S309 is shown in green; GH-S309 is shown in dark grey; GH-S309-N297A is shown in blue). A single repetition of two is shown. The right panel shows the relative Alexa-488 mean fluorescence intensity of replicates measured over the entire mononucleate population.
圖95
展示在SARS-CoV-2攻擊中宿主效應功能之作用的分析。對敘利亞倉鼠以指定量(mg/kg)之倉鼠IgG2a S309,wt或Fc沉默(S309-N297A),注射。上圖展示感染後4天肺中病毒RNA之定量。中間圖展示感染後4天肺中複製病毒之定量。下部圖展示感染後4天肺中之組織病理學評分。向對照動物(白色符號)注射4 mg/kg不相關對照同型抗體。* p< 0.05、** p< 0.01、*** p< 0.001、**** p< 0.0001相對於對照動物,使用曼-惠特尼檢定。 Figure 95 shows an analysis of the role of host effector functions in SARS-CoV-2 challenge. Syrian hamsters were injected with the indicated amounts (mg/kg) of hamster IgG2a S309, wt or Fc silenced (S309-N297A). The upper panel shows the quantification of viral RNA in the
圖96
展示在所指示抗體存在下在穩定地表現DC-SIGN之HeLa細胞中藉由SARS-CoV-2-Nluc之感染的抑制。細胞在0.04之MOI下感染。感染藉由在感染後24小時定量發光訊號進行分析。 Figure 96 shows inhibition of infection by SARS-CoV-2-Nluc in HeLa cells stably expressing DC-SIGN in the presence of the indicated antibodies. Cells were infected at an MOI of 0.04. Infections were analyzed by quantifying the
圖97 展示在所指示抗體存在下穩定地表現ACE2 (上圖)或DC-SIGN (下部圖)之HEK293T細胞的SARS-CoV-2感染之中和。細胞在0.02之MOI下感染。感染後24 h固定細胞,對病毒核衣殼蛋白免疫染色且定量陽性細胞。 Figure 97 shows neutralization of SARS-CoV-2 infection of HEK293T cells stably expressing ACE2 (upper panel) or DC-SIGN (lower panel) in the presence of the indicated antibodies. Cells were infected at an MOI of 0.02. Cells were fixed 24 h after infection, immunostained for viral nucleocapsid protein and positive cells were quantified.
圖98 展示在所指示抗體存在下穩定地表現SIGLEC1 (上圖)或L-SIGN (下部圖)之HEK293T細胞的SARS-CoV-2感染之中和。細胞在0.02之MOI下感染。感染後24 h固定細胞,對病毒核衣殼蛋白免疫染色且定量陽性細胞。 Figure 98 shows neutralization of SARS-CoV-2 infection of HEK293T cells stably expressing SIGLEC1 (upper panel) or L-SIGN (lower panel) in the presence of the indicated antibodies. Cells were infected at an MOI of 0.02. Cells were fixed 24 h after infection, immunostained for viral nucleocapsid protein and positive cells were quantified.
圖99 展示在雌性非人類靈長類動物中經64天包含Fc中之LS突變的S2E12工程化變異體409_11_4_v2之濃度曲線。 Figure 99 shows the concentration profile of the S2E12 engineered variant 409_11_4_v2 comprising the LS mutation in the Fc in female non-human primates over 64 days.
圖100 展示來自非人類靈長類動物研究之409_11_4_v2-LS藥物動力學值。 Figure 100 shows 409_11_4_v2-LS pharmacokinetic values from non-human primate studies.
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