TW201011047A - Multispecific antibodies - Google Patents
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Abstract
Description
201011047 六、發明說明: 【發明所屬之技術領域】 本發明係關於多重特異性抗體,及製造與使用該等抗體 之方法。 【先前技術】 抗體係由脊椎動物免疫系統回應於外源蛋白、聽蛋白、 細胞或其他抗原性外源物質之攻毒而產生之特異性免疫球 蛋白多肽。此過程之一重要部分為產生與特定外源物質特 異性結合之抗體。该等多肽與特定抗原之結合特異性已經 高度改進,且能夠由個別脊椎動物產生之多重特異性就其 複雜性與可變性而言為顯著的。數以千計之抗原能夠引發 . 反應’各反應幾乎僅僅針對引發其之特定抗原。 _ 特異性抗原識別對於抗體在適應性免疫反應中發揮作用 而言係必需的。在所有脊椎動物中,重鏈(HC)與輕鏈(lc) 之組合結合在抗體譜系之產生中係保守的。然而,在兩條 鏈中存在多樣性之不對稱性。HC之可變域(Vh)& Lc之可 _變域(VL)含有顯著較高之序列多樣性,且更常供應抗原識 別之決定子。LC在確定抗原特異性中之作用係由稱作受體 編輯之過程所表明。為編輯B細胞受體而正在進行之&基 因重组係校正自反應性抗體前驅體之主要機制,其中該等 抗體前驅體似乎構成初始譜系之一大部分(約75%)。已證 實輕鏈之改變可消除不需要之結合特異性或多重特異性。 抗體及抗體片段對特定抗原之特異性可使得抗體成為理 想之治療劑。抗體及抗體片段可用於靶向特定組織(例如 142552.doc 201011047 腫瘤),且藉此使得非特異性纪向之潛在副作用最小化。 因此’當前且持續需要識別及表徵適用於治療癌症及其他 增殖性病症之治療性抗體,尤其為抗體、片段及其衍生 物。 【發明内容】 本發明提供一種含有高變區(HVR)Ll序列之經分離抗 體,其中該HVR L1序列含有序列NIAKTISGY(SEQ ID NO: 1),且其中該抗體特異性地結合人類表皮生長因子受 體2(HER2)及血管内皮生長因子(VEGF)。在一項實施例 ©φ 中,該抗體另外包含:含有序列WGSFLY(SEQ ID ΝΟ:2)之 HVR-L2及/或含有序列HYSSPP(SEQ ID ΝΟ:3)之HVR-L3。 在另一項實施例中,該抗體另外含有一個、兩個或三個 _ HVR序列,其係選自⑴含有序列NIKDTY(SEQ ID ΝΟ:4)之 HVR-H1 ; (ii)含有序列 RIYPTNGYTR(SEQ ID ΝΟ:5)之 HVR-H2;及(iii)含有序列 WGGDGFYAMD(SEQ ID ΝΟ:6) 之HVR-H3。在另一項實施例中,該抗體另外含有一個、201011047 VI. DESCRIPTION OF THE INVENTION: TECHNICAL FIELD OF THE INVENTION The present invention relates to multiplex specific antibodies, and methods of making and using the same. [Prior Art] The specific immunoglobulin polypeptide produced by the vertebrate immune system in response to challenge with foreign proteins, receptor proteins, cells or other antigenic foreign substances. An important part of this process is the production of antibodies that specifically bind to specific exogenous substances. The binding specificity of such polypeptides to specific antigens has been highly improved, and the multiple specificities that can be produced by individual vertebrates are significant in terms of their complexity and variability. Thousands of antigens can elicit. The reactions' reactions are almost exclusively directed to the specific antigen that elicits them. _ Specific antigen recognition is essential for antibodies to play a role in adaptive immune responses. In all vertebrates, the combination of heavy chain (HC) and light chain (lc) is conserved in the production of antibody lineages. However, there is a diversity of asymmetry in the two chains. The variable domain (Vh) & Lc of the HC _ variable domain (VL) contains significantly higher sequence diversity and more often supplies antigenic determinants. The role of LC in determining antigen specificity is indicated by the process known as receptor editing. The ongoing&recombinant recombination lines for editing B cell receptors are the primary mechanism for correcting self-reactive antibody precursors, which appear to constitute a large portion (about 75%) of the original lineage. Changes in the light chain have been demonstrated to eliminate unwanted binding specificity or multiple specificity. The specificity of antibodies and antibody fragments for a particular antigen can make the antibody an ideal therapeutic agent. Antibodies and antibody fragments can be used to target specific tissues (e.g., 142552.doc 201011047 tumors) and thereby minimize potential side effects in the non-specific age. Thus, there is a current and continuing need to identify and characterize therapeutic antibodies, particularly antibodies, fragments and derivatives thereof, suitable for the treatment of cancer and other proliferative disorders. SUMMARY OF THE INVENTION The present invention provides an isolated antibody comprising a high variable region (HVR) L1 sequence, wherein the HVR L1 sequence comprises the sequence NIAKTISGY (SEQ ID NO: 1), and wherein the antibody specifically binds to human epidermal growth factor Receptor 2 (HER2) and vascular endothelial growth factor (VEGF). In an embodiment, φ, the antibody further comprises: HVR-L2 comprising the sequence WGSFLY (SEQ ID ΝΟ: 2) and/or HVR-L3 comprising the sequence HYSSPP (SEQ ID ΝΟ: 3). In another embodiment, the antibody additionally comprises one, two or three _HVR sequences selected from the group consisting of (1) HVR-H1 comprising the sequence NIKDTY (SEQ ID ΝΟ: 4); (ii) the sequence RIYPTNGYTR ( HVR-H2 of SEQ ID NO: 5); and (iii) HVR-H3 containing the sequence WGGDGFYAMD (SEQ ID ΝΟ: 6). In another embodiment, the antibody additionally contains one,
兩個或三個HVR序列,其係選自⑴含有序列NISGTY(SEQ 〇 ID NO:7)之 HVR-H1 ; (ii)含有序列 RIYPSEGYTR(SEQ ID NO:9)之HVR-H3。 在另一態樣中,本發明提供一種含有HVR-L1序列之經 分離抗體,其中該HVR-L1序列含有序列 XJXsXdsXeXvXsXaiSEQ ID NO:83),其中又丨為除天冬胺 酸以外之任何胺基酸,X3為除脯胺酸以外之任何胺基酸, 142552.doc 201011047Two or three HVR sequences selected from the group consisting of (1) HVR-H1 containing the sequence NISGTY (SEQ ID NO: 7); (ii) HVR-H3 containing the sequence RIYPSEGYTR (SEQ ID NO: 9). In another aspect, the invention provides an isolated antibody comprising an HVR-L1 sequence, wherein the HVR-L1 sequence comprises the sequence XJXsXdsXeXvXsXaiSEQ ID NO: 83), wherein the guanidine is any amine group other than aspartic acid Acid, X3 is any amino acid other than proline, 142552.doc 201011047
X4為除精胺酸以外之任何胺基酸且X5為除絲胺酸以外之任 何胺基酸,且其中該抗體特異性地結合HER2及VEGF。在 一項實施例中,含有序列XJXsXiXsXeXTXsXpYCSEQ ID NO:8 3)之抗體於义〗處具有天冬醯胺,於X3處具有丙胺酸, 於X4處具有離胺酸,於X5處具有蘇胺酸,於X?處具有絲胺 酸,及/或於X8處具有甘胺酸,或其任何組合。在本發明 之此態樣之各種實施例中,圖57中所示之任何具有大於 1、5或10之F值的HVR-L1殘基均為較佳保持為與在bHl-44 或bHl-81之HVR-L1之相同位置(SEQ ID ΝΟ:1)處發現之殘 基相同的殘基。在其他實施例中,表14中所示之任何具有 大於1之AAG值的HVR-L1殘基均為較佳保持為與在bHl-44 或bHl-81之HVR-L1之相同位置(SEQ ID ΝΟ:1)處發現之殘 基相同的殘基。在一項實施例中,該抗體包含HVR-H2序 列,其包含序列 RX2X3X4X5X6X7X8X9R(SEQ ID NO:84)。 在一項實施例中,該抗體另外包含:含有序列 WGSFLY(SEQ ID NO:2)之 HVR-L2 及 / 或含有序列 HYSSPP(SEQ ID NO:3)之 HVR-L3。在另一項實施例中, 該抗體另外含有一個、兩個或三個HVR序列,其係選自⑴ 含有序列 NIKDTY(SEQ ID NO:4)之HVR-H1 ; (ii)含有序列 RIYPTNGYTR(SEQ ID NO:5)之 HVR-H2;及(iii)含有序列 WGGDGFYAMD(SEQ ID NO:6)之HVR-H3。在另一項實施 例中,該抗體另外含有一個、兩個或三個HVR序列,其係 選自(i)含有序列 NISGTY(SEQ ID NO:7)之HVR-H1 ; (ii)含 有序列 RIYPSEGYTR(SEQ ID NO:8)之 HVR-H2;及(iii)含 142552.doc 201011047 有序列 WVGVGFYAMD(SEQ ID NO:9)之HVR-H3。 在另一態樣中,本發明提供一種含有HVR-H2序列之經 分離抗體,其中該HVR-H2序列含有序列 RX2X3X4X5X6X7X8X9R(SEQ ID NO:85),其中 X5為除蘇胺 酸以外之任何胺基酸且X6為除天冬醯胺以外之任何胺基 酸,且其中該抗體特異性地結合HER2及VEGF。在另一項 實施例中,含有序列 RX2X3X4X5X6X7X8X9R(SEQ ID ΝΟ··84)之抗體於X8處具有酪胺酸。在一項實施例中,含有 序列 RX2X3X4X5X6X7X8X9r(SEQ ID NO:84)之抗體於又5處 具有絲胺酸及/或於X6處具有麩胺酸。在該態樣之另一項 實施例中’該等抗體另外含有一個、兩個或三個HVR序 列’其係選自以下之群:含有序列NIAKTISGY(SEQ ID ΝΟ:1)之 HVR-L1、含有序列 WGSFLY(SEQ ID NO:2)之 HVR-L2及/或含有序列HYSSPP(SEQ ID NO:3)之HVR-L3。 在本文所述之任何實施例中,該等抗體另外含有一或兩個 HVR序列’其係選自⑴含有序列NIKDTY(SEQ ID NO:4)之 HVR-H1 及(ii)含有序列 WGgdGFYAMD(SEQ ID ΝΟ··6)之 H HVR-H3。在另一項實施例中’該等抗體另外含有一或兩 個HVR序列,其係選自⑴含有序列msGTY(SEQ ID NO:7) 之 HVR-H1 及(ii)含有序列 WvgvGFYAMD(SEQ ID NO:9)之 HVR-H3。X4 is any amino acid other than arginine and X5 is any amino acid other than serine, and wherein the antibody specifically binds to HER2 and VEGF. In one embodiment, the antibody comprising the sequence XJXsXiXsXeXTXsXpYCSEQ ID NO: 8 3) has aspartame, an alanine at X3, an amidic acid at X4, and sulphate at X5. , having a serine at X?, and/or having a glycine at X8, or any combination thereof. In various embodiments of this aspect of the invention, any of the HVR-L1 residues shown in Figure 57 having an F value greater than 1, 5 or 10 are preferably maintained as in bHl-44 or bHl- The residue found at the same position (SEQ ID ΝΟ: 1) of HVR-L1 of 81 is the same residue. In other embodiments, any of the HVR-L1 residues shown in Table 14 having an AAG value greater than 1 are preferably maintained at the same position as HVR-L1 of bH1-44 or bH1-81 (SEQ ID ΝΟ: 1) Residues found at the same residue. In one embodiment, the antibody comprises the HVR-H2 sequence comprising the sequence RX2X3X4X5X6X7X8X9R (SEQ ID NO: 84). In one embodiment, the antibody further comprises: HVR-L2 comprising the sequence WGSFLY (SEQ ID NO: 2) and/or HVR-L3 comprising the sequence HYSSPP (SEQ ID NO: 3). In another embodiment, the antibody further comprises one, two or three HVR sequences selected from the group consisting of (1) HVR-H1 comprising the sequence NIKDTY (SEQ ID NO: 4); (ii) the sequence RIYPTNGYTR (SEQ) ID NO: 5) HVR-H2; and (iii) HVR-H3 containing the sequence WGGDGFYAMD (SEQ ID NO: 6). In another embodiment, the antibody additionally comprises one, two or three HVR sequences selected from the group consisting of (i) HVR-H1 comprising the sequence NISGTY (SEQ ID NO: 7); (ii) the sequence comprising RYPSEGYTR HVR-H2 of (SEQ ID NO: 8); and (iii) HVR-H3 having the sequence WVGVGFYAMD (SEQ ID NO: 9) containing 142552.doc 201011047. In another aspect, the invention provides an isolated antibody comprising an HVR-H2 sequence, wherein the HVR-H2 sequence comprises the sequence RX2X3X4X5X6X7X8X9R (SEQ ID NO: 85), wherein X5 is any amine group other than threonine Acid and X6 is any amino acid other than aspartame, and wherein the antibody specifically binds to HER2 and VEGF. In another embodiment, the antibody comprising the sequence RX2X3X4X5X6X7X8X9R (SEQ ID ΝΟ.84) has tyrosine at X8. In one embodiment, the antibody comprising the sequence RX2X3X4X5X6X7X8X9r (SEQ ID NO: 84) has leucine at 5 and/or glutamic acid at X6. In another embodiment of this aspect, the antibodies additionally comprise one, two or three HVR sequences which are selected from the group consisting of HVR-L1 containing the sequence NIAKTISGY (SEQ ID ΝΟ: 1). HVR-L2 containing the sequence WGSFLY (SEQ ID NO: 2) and/or HVR-L3 containing the sequence HYSSPP (SEQ ID NO: 3). In any of the embodiments described herein, the antibodies additionally comprise one or two HVR sequences selected from the group consisting of (1) HVR-H1 comprising the sequence NIKDTY (SEQ ID NO: 4) and (ii) the sequence containing WGgdGFYAMD (SEQ. ID ΝΟ··6) H HVR-H3. In another embodiment, the antibodies additionally comprise one or two HVR sequences selected from the group consisting of (1) HVR-H1 comprising the sequence msGTY (SEQ ID NO: 7) and (ii) the sequence containing WvgvGFYAMD (SEQ ID NO) :9) HVR-H3.
在本發明之此態樣之各種實施例中,圖57中所示之任何 具有大於1、5或1〇之f值的HVR-H2殘基均為較佳保持為與 在bHl-44或bHl-81之HVR-H2之相同位置(分別為SEQ ID 142552.doc -6 - 201011047 NO:8及5)處發現之殘基相同的殘基。在其他實施例中,表 14中所示之任何具有大於1之AAG值的HVR-H2殘基均為較 佳保持為與在bm-44或bHl-81之HVR-H2之相同位置(分別 為SEQ ID NO·. 8及5)處發現之殘基相同的殘基。 在特定實施例中,抗體包含:含有NIAKTISGY(SEQ ID ΝΟ:1)之 HVR-L1序列;含有 WGSFLY(SEQ ID NO:2)之 HVR-L2序列;含有 HYSSPP(SEQ ID NO:3)之 HVR-L3 序 列;含有 NIKDTY(SEQ ID NO:4)之 HVR-H1序列;含有 RIYPTNGYTR(SEQ ID ΝΟ:5)之 HVR-H2 序列;及含有 WGGDGFYAMD(SEQ ID ΝΟ:6)之HVR-H3序列,或包含: 含有 NIAKTISGY(SEQ ID ΝΟ:1)之 HVR-L1序列;含有 • WGSFLY(SEQ ID NO:2)之 HVR-L2 序列;含有 HYSSPP(SEQ ID NO:3)之HVR-L3序列;含有 NISGTY(SEQ ID NO:7)之 HVR-H1 序列;含有 RIYPSEGYTR(SEQ ID NO:8)之 HVR-H2序列;及 /或含有 WVGVGFYAMD(SEQ ID NO:9)之 HVR-H3序列。 在另一項特定實施例中,經分離抗體含有HVR-L1、 HVR-L2、HVR-L3、HVR-H1、HVR-H2 及 HVR-H3,其中 各自依序含有序列NIAKTISGY(SEQ ID ΝΟ:1); WGSFLY(SEQ ID NO:2) ; HYSSPP(SEQ ID NO:3); NIKDTY(SEQ ID NO:4) ; RIYPTNGYTR(SEQ ID NO:5); 及WGGDGFYAMD(SEQ ID NO:6),且該抗體特異性地結合 HER2及VEGF。在另一項特定實施例中,抗體含有1^11-Ll、HVR-L2、HVR-L3、HVR-H1、HVR-H2及 HVR-H3, 142552.doc 201011047 其中各自依序含有序列NIAKTISGY(SEQ ID ΝΟ:1); WGSFLY(SEQ ID NO:2) ; HYSSPP(SEQ ID NO:3); NISGTY(SEQ ID NO:7) ; RIYPSEGYTR(SEQ ID NO:8);及 WVGVGFYAMD(SEQ ID NO:9),且該抗體特異性地結合 HER2及 VEGF。 在本文所述之任何態樣之各種實施例中,抗體以150 nM 或更強之Kd結合人類及鼠類VEGF且以7 nM或更強之Kd結 合HER2。在其他實施例中,該抗體相對於對照物抑制 VEGF誘發之細胞增殖及表現HER2之細胞的增殖。在一項 特定實施例中,抗體以36 nM或更強之Kd結合人類及鼠類 VEGF且以1 nM或更強之Kd結合HER2。在另一項實施例 中,該抗體抑制VEGF與VEGFR2結合。 在另一態樣中,本發明提供一種經分離抗體,其以1 50 nM或更強之Kd結合人類及鼠類VEGF且以7 nM或更強之 Kd結合HER2,且其中該抗體相對於對照物抑制VEGF誘發 之細胞增殖及表現HER2之細胞的增殖。在一項實施例 中,該抗體以36 nM或更強之Kd結合人類及鼠類VEGF且 以1 nM或更強之Kd結合HER2。 在又一態樣中,本發明提供一種經分離抗體片段’其以 58 nM或更強之Kd結合人類VEGF且以6 nM或更強之KdS 合HER2,且/或相對於對照物抑制VEGF誘發之細胞增殖及 表現HER2之細胞的增殖。在一項特定實施例中,該抗體 片段以33 nM或更強之Kd結合人類及鼠類VEGF且以〇.7 nM 或更強之Kd結合HER2。在另一項特定實施例中’該片段 142552.doc 201011047 為Fab片段或單鏈可變片段(scFv)。 在任何上述態樣中,抗體可為單株抗體。在所有上述態 樣之另一項實施例中,抗體可為IgG抗體。在所有上述態 樣之其他實施例中,抗體之構架序列的至少一部分可為人 類共同構架序列。 在另一態樣中,本發明提供一種抗體(本文所述之任何 抗體)片段。抗體片段之一項實施例為特異性地結合HER2 及 VEGF且含有含序列NIAKTISGY(SEQ ID ΝΟ:1)之 HVR-L1序列的片段。在另一項實施例中,該抗體片段另外含有 一或兩個HVR序列,其係選自(i)含有序列WGSFLY(SEQ ID NO:2)之 HVR-L2 ;及(ii)含有序列 HYSSPP(SEQ ID - NO:3)之HVR-L3。在另一項實施例中,該抗體片段另外含 . 有一個、兩個或三個HVR序列,其係選自(i)含有序列 NIKDTY(SEQ ID NO:4)之 HVR-H1 ; (ii)含有序列 RIYPTNGYTR(SEQ ID NO:5)之 HVR-H2;及(iii)含有序列 WGGDGFYAMD(SEQ ID NO:6)之 HVR-H3。在另一項實施 例中,該抗體片段另外含有一個、兩個或三個HVR序列, 其係選自⑴含有序列NISGTY(SEQ ID NO:7)之HVR-H1 ; (ii) 含有序列 RIYPSEGYTR(SEQ ID NO:8)之 HVR-H2 ;及 (iii) 含有序列 WVGVGFYAMD(SEQ ID NO:9)之 HVR-H3。 在特定實施例中,該抗體片段包含:含有NIAKTISGY(SEQ ID ΝΟ:1)之 HVR-L1序列;含有 WGSFLY(SEQ ID NO:2)之 HVR-L2序列;含有 HYSSPP(SEQ ID NO:3)之 HVR-L3 序 列;含有NIKDTY(SEQ ID NO:4)之 HVR-H1序列;含有 142552.doc 201011047 RIYPTNGYTR(SEQ ID NO:5)之 HVR-H2 序列;及含有 WGGDGFYAMD(SEQ ID NO:6)之HVR-H3序列,或包含: 含有 NIAKTISGY(SEQ ID ΝΟ:1)之 HVR-L1 序列;含有 WGSFLY(SEQ ID NO:2)之 HVR-L2序列;含有 HYSSPP(SEQ ID NO:3)之HVR-L3序列;含有 NISGTY(SEQ ID NO:7)之 HVR-H1序列;含有 RIYPSEGYTR(SEQ ID NO:8)之 HVR-H2序列;及含有 WVGVGFYAMD(SEQ ID NO:9)之 HVR-H3 序列。在一項實施例中,該片段為Fab片段或單鏈可變片 段(scFv)。在所有上述態樣之其他實施例中,抗體之構架 序列的至少一部分可為人類共同構架序列。In various embodiments of this aspect of the invention, any of the HVR-H2 residues shown in Figure 57 having an f-value greater than 1, 5 or 1 均为 are preferably maintained as in bHl-44 or bHl. The residues found at the same positions of HVR-H2 of -81 (SEQ ID 142552.doc -6 - 201011047 NO: 8 and 5, respectively) are the same residues. In other embodiments, any of the HVR-H2 residues having an AAG value greater than 1 as shown in Table 14 are preferably maintained at the same position as HVR-H2 at bm-44 or bHl-81 (respectively The residues found at SEQ ID NO. 8 and 5) are the same residues. In a specific embodiment, the antibody comprises: an HVR-L1 sequence comprising NIAKTISGY (SEQ ID NO: 1); an HVR-L2 sequence comprising WGSFLY (SEQ ID NO: 2); and an HVR comprising HYSSPP (SEQ ID NO: 3) -L3 sequence; HVR-H1 sequence containing NIKDTY (SEQ ID NO: 4); HVR-H2 sequence containing RIYPTNGYTR (SEQ ID ΝΟ: 5); and HVR-H3 sequence containing WGGDGFYAMD (SEQ ID ΝΟ: 6), Or comprise: an HVR-L1 sequence comprising NIAKTISGY (SEQ ID ΝΟ: 1); an HVR-L2 sequence comprising: WGSFLY (SEQ ID NO: 2); an HVR-L3 sequence comprising HYSSPP (SEQ ID NO: 3); The HVR-H1 sequence of NISGTY (SEQ ID NO: 7); the HVR-H2 sequence containing RIYPSEGYTR (SEQ ID NO: 8); and/or the HVR-H3 sequence containing WVGVGFYAMD (SEQ ID NO: 9). In another specific embodiment, the isolated antibody comprises HVR-L1, HVR-L2, HVR-L3, HVR-H1, HVR-H2, and HVR-H3, each of which contains the sequence NIAKTISGY (SEQ ID ΝΟ: 1). WGSFLY (SEQ ID NO: 2); HYSSPP (SEQ ID NO: 3); NIKDTY (SEQ ID NO: 4); RIYPTNGYTR (SEQ ID NO: 5); and WGGDGFYAMD (SEQ ID NO: 6), and The antibody specifically binds to HER2 and VEGF. In another specific embodiment, the antibody comprises 1^11-L1, HVR-L2, HVR-L3, HVR-H1, HVR-H2, and HVR-H3, 142552.doc 201011047 wherein each sequence contains the sequence NIAKTISGY (SEQ ID ΝΟ: 1); WGSFLY (SEQ ID NO: 2); HYSSPP (SEQ ID NO: 3); NISGTY (SEQ ID NO: 7); RIYPSEGYTR (SEQ ID NO: 8); and WVGVGFYAMD (SEQ ID NO: 9) And the antibody specifically binds to HER2 and VEGF. In various embodiments of any of the aspects described herein, the antibody binds human and murine VEGF with a Kd of 150 nM or greater and binds HER2 with a Kd of 7 nM or greater. In other embodiments, the antibody inhibits VEGF-induced cell proliferation and proliferation of HER2 expressing cells relative to a control. In a specific embodiment, the antibody binds to human and murine VEGF with a Kd of 36 nM or greater and binds to HER2 with a Kd of 1 nM or greater. In another embodiment, the antibody inhibits binding of VEGF to VEGFR2. In another aspect, the invention provides an isolated antibody that binds to human and murine VEGF with a Kd of 150 nM or greater and binds to HER2 with a Kd of 7 nM or greater, and wherein the antibody is relative to a control The substance inhibits VEGF-induced cell proliferation and proliferation of cells expressing HER2. In one embodiment, the antibody binds to human and murine VEGF with a Kd of 36 nM or greater and binds to HER2 with a Kd of 1 nM or greater. In yet another aspect, the invention provides an isolated antibody fragment that binds to human VEGF with a Kd of 58 nM or greater and KdS with HER2 of 6 nM or greater, and/or inhibits VEGF induction relative to a control Cell proliferation and proliferation of cells expressing HER2. In a specific embodiment, the antibody fragment binds human and murine VEGF with a Kd of 33 nM or greater and binds HER2 with a Kd of 〇.7 nM or greater. In another specific embodiment, the fragment 142552.doc 201011047 is a Fab fragment or a single chain variable fragment (scFv). In any of the above aspects, the antibody may be a monoclonal antibody. In another embodiment of all of the above aspects, the antibody can be an IgG antibody. In other embodiments of all of the above aspects, at least a portion of the framework sequences of the antibodies can be human consensus framework sequences. In another aspect, the invention provides a fragment of an antibody (any of the antibodies described herein). An example of an antibody fragment is a fragment that specifically binds to HER2 and VEGF and contains the HVR-L1 sequence comprising the sequence NIAKTISGY (SEQ ID ΝΟ: 1). In another embodiment, the antibody fragment additionally comprises one or two HVR sequences selected from the group consisting of (i) HVR-L2 comprising the sequence WGSFLY (SEQ ID NO: 2); and (ii) the sequence containing HYSSPP ( HVR-L3 of SEQ ID - NO: 3). In another embodiment, the antibody fragment additionally comprises one, two or three HVR sequences selected from the group consisting of (i) HVR-H1 comprising the sequence NIKDTY (SEQ ID NO: 4); (ii) HVR-H2 comprising the sequence RIYPTNGYTR (SEQ ID NO: 5); and (iii) HVR-H3 comprising the sequence WGGDGFYAMD (SEQ ID NO: 6). In another embodiment, the antibody fragment additionally comprises one, two or three HVR sequences selected from the group consisting of (1) HVR-H1 comprising the sequence NISGTY (SEQ ID NO: 7); (ii) the sequence comprising RIYPSEGYTR ( HVR-H2 of SEQ ID NO: 8); and (iii) HVR-H3 containing the sequence WVGVGFYAMD (SEQ ID NO: 9). In a particular embodiment, the antibody fragment comprises: an HVR-L1 sequence comprising NIAKTISGY (SEQ ID NO: 1); an HVR-L2 sequence comprising WGSFLY (SEQ ID NO: 2); comprising HYSSPP (SEQ ID NO: 3) HVR-L3 sequence; HVR-H1 sequence containing NIKDTY (SEQ ID NO: 4); HVR-H2 sequence containing 142552.doc 201011047 RIYPTNGYTR (SEQ ID NO: 5); and WGGDGFYAMD (SEQ ID NO: 6) HVR-H3 sequence, or comprising: HVR-L1 sequence containing NIAKTISGY (SEQ ID ΝΟ: 1); HVR-L2 sequence containing WGSFLY (SEQ ID NO: 2); HVR containing HYSSPP (SEQ ID NO: 3) -L3 sequence; HVR-H1 sequence containing NISGTY (SEQ ID NO: 7); HVR-H2 sequence containing RIYPSEGYTR (SEQ ID NO: 8); and HVR-H3 sequence containing WVGVGFYAMD (SEQ ID NO: 9). In one embodiment, the fragment is a Fab fragment or a single chain variable fragment (scFv). In other embodiments of all of the above aspects, at least a portion of the framework sequences of the antibodies can be human consensus framework sequences.
在其他態樣中,本發明提供編碼本文所述之任何抗體或 抗體片段的聚核苷酸,以及一種含有該類聚核苷酸之載 體。在特定實施例中,所編碼之抗體含有含 NIAKTISGY(SEQ ID ΝΟ:1)之HVR-L1序列。視情況而定或 另外而言,該聚核苷酸編碼亦含有含WGSFLY(SEQ ID NO:2)之 HVR-L2 序列及 / 或含 HYSSPP(SEQ ID NO:3)之 HVR-L3序列或其任何組合的抗體。在另一態樣中,該聚 核苷酸可另外編碼含有以下序列中之一者、兩者或三者的 抗體:含有NIKDTY(SEQ ID NO:4)之HVR-H1序列;含有 RIYPTNGYTR(SEQ ID NO:5)之 HVR-H2 序列;及含有 WGGDGFYAMD(SEQ ID NO:6)之HVR-H3序列;或編碼含 有以下序列中之一者、兩者或三者的抗體:含有 NISGTY(SEQ ID NO:7)之 HVR-H1 ;含有RIYPSEGYTR(SEQ ID NO:8)之 HVR-H2 ;及 / 或含有 WVGVGFYAMD(SEQ ID 142552.doc -10- 201011047 NO:9)之 HVR-H3序列。 在本發明之其他態樣中,聚核苷酸編碼含有序列 NISGTY(SEQ ID NO:7)之 HVR-H1 序列、具有 RIYPSEGYTR(SEQ ID NO:8)之 HVR-H2 序列或具有 WVGVGFYAMD(SEQ ID NO:9)之 HVR-H3序列或其任何組 合。 在其他態樣中,本發明提供一種編碼含有序列 NIAKTISGY(SEQ ID ΝΟ··1)之HVR-L1序列的經分離聚核苷 ·· 酸,且視情況而定,該聚核苷酸另外編碼一個、兩個或三 個HVR序列,其係選自(i)含有序列NIKDTY(SEQ ID ΝΟ:4) 之 HVR-H1 ; (ii)含有序列 RIYPTNGYTR(SEQ ID ΝΟ:5)之 HVR-H2 ;及(iii)含有序列 WGGDGFYAMD(SEQ ID ΝΟ:6) 之HVR-H3。在其他態樣中,本發明提供一種編碼以下序 列之經分離聚核苷酸:含有序列NIAKTISGY(SEQ ID ΝΟ:1)之HVR-L1序列及(i)含有序列 WGSFLY(SEQ ID NO:2) 之HVR-L2序列或(ii)含有序列HYSSPP(SEQ ID NO:3)之 HVR-L3序列或其兩者,且視情況而定地,該聚核苷酸另 外編碼一個、兩個或三個HVR序列,其係選自(i)含有序列 NIKDTY(SEQ ID NO:4)之 HVR-H1 ; (ii)含有序列 RIYPTNGYTR(SEQ ID NO:5)之HVR-H2;及(iii)含有序列 WGGDGFYAMD(SEQ ID NO:6)之HVR-H3。 在另一態樣中,本發明提供一種編碼以下序列之經分 離聚核苷酸:含有序列NIAKTISGY(SEQ ID ΝΟ:1)之HVR-L1序列;含有序列NISGTY(SEQ ID NO:7)之HVR-H1 ;含 142552.doc -11 - 201011047 有序列RIYPSEGYTR(SEQ ID NO:8)之HVR-H2;及含有序 列 WVGVGFYAMD(SEQ ID NO:9)之 HVR-H3。在又一態樣 中,本發明提供一種編碼以下序列之經分離聚核苷酸:含 有序列NIAKTISGY(SEQ ID ΝΟ:1)之HVR-L1序列;含有序 列WGSFLY(SEQ ID NO:2)之HVR-L2序列;含有序列 HYSSPP(SEQ ID NO:3)之 HVR-L3 序列;含有序列 NISGTY(SEQ ID NO:7)之 HVR-H1 ;含有序列 RIYPSEGYTR(SEQ ID NO:8)之 HVR-H2 ;及含有序列 WVGVGFYAMD(SEQ ID NO:9)之HVR-H3。 在其他態樣中,本發明提供一種編碼含有序列 NISGTY(SEQ ID NO:7)之HVR-H1序列的經分離聚核苷 酸、一種編碼含有序列RIYPSEGYTR(SEQ ID NO:8)之 HVR-H2序列的經分離聚核苷酸及一種編碼含有序列 WVGVGFYAMD(SEQ ID NO:9)之 HVR-H3序列的經分離聚 核苷酸。在另一態樣中,本發明提供一種編碼某一多肽之 經分離聚核苷酸,該多肽包含:含有序列NISGTY(SEQ ID NO:7)之 HVR-H1 序列;含有序列 riypsEGYTR(SEQ ID NO:8)之 HVR-H2 序列;及含有序列 WVGVGFYAMD(SEQ IDNO:9)之 HVR-H3序列。 在本發明之另一項實施例中,經分離聚核苷酸編碼含有 序列 XJXsXAsXeXAsXgYCSEQ ID NO:83)之 HVR-L1 序 列,其中Χι為除天冬胺酸以外之任何胺基酸,X3為除脯胺 酸以外之任何胺基酸,X4為除精胺酸以外之任何胺基酸且 X5為除絲胺酸以外之任何胺基酸。在本發明之另一項實施 142552.doc -12- 201011047 例中,聚核苷酸編碼含有序列XiIX3X4X5X6X7X8X9Y(SEQ ID NO:83)之HVR-L1序列(其中Xi為除Asp以外之任何胺基 酸,X3為除脯胺酸以外之任何胺基酸,X4為除精胺酸以外 之任何胺基酸且X5為除絲胺酸以外之任何胺基酸)及含有 序列WGSFLY(SEQ ID NO:2)之HVR-L2序列及/或含有序列 HYSSPP(SEQ ID NO:3)之HVR-L3序列。在本發明之此態 樣之其他實施例中,聚核苷酸編碼含有序列In other aspects, the invention provides polynucleotides encoding any of the antibodies or antibody fragments described herein, as well as a vector comprising such polynucleotides. In a specific embodiment, the encoded antibody comprises a HVR-L1 sequence comprising NIAKTISGY (SEQ ID ΝΟ: 1). Optionally or additionally, the polynucleotide encoding also comprises an HVR-L2 sequence comprising WGSFLY (SEQ ID NO: 2) and/or an HVR-L3 sequence comprising HYSSPP (SEQ ID NO: 3) or Any combination of antibodies. In another aspect, the polynucleotide may additionally encode an antibody comprising one, two or three of the following sequences: an HVR-H1 sequence comprising NIKDTY (SEQ ID NO: 4); comprising RIYPTNGYTR (SEQ ID NO: 5) HVR-H2 sequence; and HVR-H3 sequence containing WGGDGFYAMD (SEQ ID NO: 6); or an antibody encoding one, two or three of the following sequences: containing NISGTY (SEQ ID NO: 7) HVR-H1; HVR-H2 containing RIYPSEGYTR (SEQ ID NO: 8); and/or HVR-H3 sequence containing WVGVGFYAMD (SEQ ID 142552. doc-10-201011047 NO: 9). In other aspects of the invention, the polynucleotide encodes an HVR-H1 sequence comprising the sequence NISGTY (SEQ ID NO: 7), an HVR-H2 sequence having RIYPSEGYTR (SEQ ID NO: 8) or has WVGVGFYAMD (SEQ ID) NO: 9) HVR-H3 sequence or any combination thereof. In other aspects, the invention provides an isolated polynucleoside acid encoding an HVR-L1 sequence comprising the sequence NIAKTISGY (SEQ ID ΝΟ·1), and optionally, the polynucleotide is further encoded One, two or three HVR sequences selected from the group consisting of (i) HVR-H1 comprising the sequence NIKDTY (SEQ ID ΝΟ: 4); (ii) HVR-H2 comprising the sequence RIYPTNGYTR (SEQ ID ΝΟ: 5); And (iii) HVR-H3 containing the sequence WGGDGFYAMD (SEQ ID ΝΟ: 6). In other aspects, the invention provides an isolated polynucleotide encoding a sequence comprising: the HVR-L1 sequence comprising the sequence NIAKTISGY (SEQ ID ΝΟ: 1) and (i) the sequence containing WGSFLY (SEQ ID NO: 2) The HVR-L2 sequence or (ii) the HVR-L3 sequence comprising the sequence HYSSPP (SEQ ID NO: 3) or both, and optionally, the polynucleotide encodes one, two or three An HVR sequence selected from the group consisting of (i) HVR-H1 comprising the sequence NIKDTY (SEQ ID NO: 4); (ii) HVR-H2 comprising the sequence RIYPTNGYTR (SEQ ID NO: 5); and (iii) the sequence containing WGGDGFYAMD (SEQ ID NO: 6) HVR-H3. In another aspect, the invention provides an isolated polynucleotide encoding the sequence: HVR-L1 sequence comprising the sequence NIAKTISGY (SEQ ID ΝΟ: 1); HVR comprising the sequence NISGTY (SEQ ID NO: 7) -H1; containing 142552.doc -11 - 201011047 HVR-H2 having the sequence RIYPSEGYTR (SEQ ID NO: 8); and HVR-H3 containing the sequence WVGVGFYAMD (SEQ ID NO: 9). In still another aspect, the invention provides an isolated polynucleotide encoding the sequence: HVR-L1 sequence comprising the sequence NIAKTISGY (SEQ ID ΝΟ: 1); HVR comprising the sequence WGSFLY (SEQ ID NO: 2) -L2 sequence; HVR-L3 sequence containing the sequence HYSSPP (SEQ ID NO: 3); HVR-H1 containing the sequence NISGTY (SEQ ID NO: 7); HVR-H2 containing the sequence RIYPSEGYTR (SEQ ID NO: 8); And HVR-H3 containing the sequence WVGVGFYAMD (SEQ ID NO: 9). In other aspects, the invention provides an isolated polynucleotide encoding a HVR-H1 sequence comprising the sequence NISGTY (SEQ ID NO: 7), an HVR-H2 encoding the sequence RIYPSEGYTR (SEQ ID NO: 8) An isolated polynucleotide of the sequence and an isolated polynucleotide encoding the HVR-H3 sequence comprising the sequence WVGVGFYAMD (SEQ ID NO: 9). In another aspect, the invention provides an isolated polynucleotide encoding a polypeptide comprising: an HVR-H1 sequence comprising the sequence NISGTY (SEQ ID NO: 7); comprising the sequence riypsEGYTR (SEQ ID) NO: 8) HVR-H2 sequence; and HVR-H3 sequence containing the sequence WVGVGFYAMD (SEQ ID NO: 9). In another embodiment of the invention, the isolated polynucleotide encodes a HVR-L1 sequence comprising the sequence XJXsXAsXeXAsXgYCSEQ ID NO: 83), wherein Χι is any amino acid other than aspartic acid, X3 is Any amino acid other than proline, X4 is any amino acid other than arginine and X5 is any amino acid other than serine. In another embodiment of the invention 142552.doc -12-201011047, the polynucleotide encodes an HVR-L1 sequence comprising the sequence XiIX3X4X5X6X7X8X9Y (SEQ ID NO: 83) (where Xi is any amino acid other than Asp) , X3 is any amino acid other than proline, X4 is any amino acid other than arginine and X5 is any amino acid other than serine) and contains the sequence WGSFLY (SEQ ID NO: 2) The HVR-L2 sequence and/or the HVR-L3 sequence containing the sequence HYSSPP (SEQ ID NO: 3). In other embodiments of this aspect of the invention, the polynucleotide encoding contains sequences
XilXsXAsXGXTXsXsYeEQIDNOJS)之抗體,該抗體於 X! 處具有天冬醯胺,於X3處具有丙胺酸,於X4處具有離胺 酸,於X5處具有蘇胺酸,於X7處具有絲胺酸,及/或於X8 處具有甘胺酸,或其任何組合。在本發明之此態樣之各種 實施例中,圖57中所示之任何具有大於1、5或10之F值的 HVR-L1殘基均為較佳保持為與在bHl-44或bHl-81之HVR-L1之相同位置(SEQ ID ΝΟ:1)處發現之殘基相同的殘基。 在其他實施例中,表14中所示之任何具有大於1之AAG值 的HVR-L1殘基均為較佳保持為與在bHl-44或bHl-81之 HVR-L1之相同位置(SEQ ID ΝΟ:1)處發現之殘基相同的殘 基。An antibody of XilXsXAsXGXTXsXsYeEQIDNOJS) having aspartame at X!, having alanine at X3, an amine acid at X4, a sulphate at X5, a serine at X7, and/ Or have glycine at X8, or any combination thereof. In various embodiments of this aspect of the invention, any of the HVR-L1 residues shown in Figure 57 having an F value greater than 1, 5 or 10 are preferably maintained as in bHl-44 or bHl- The residue found at the same position (SEQ ID ΝΟ: 1) of HVR-L1 of 81 is the same residue. In other embodiments, any of the HVR-L1 residues shown in Table 14 having an AAG value greater than 1 are preferably maintained at the same position as HVR-L1 of bH1-44 or bH1-81 (SEQ ID ΝΟ: 1) Residues found at the same residue.
在本發明之另一項實施例中,聚核苷酸編碼含有序列 RX2X3X4X5X6X7X8X9R(SEQ ID NO:85)之HVR-H2序列,其 中x5為除蘇胺酸以外之任何胺基酸且x6為除天冬醯胺以外 之任何胺基酸。在另一態樣中,本發明提供一種編碼以下 序列之聚核苷酸:含有序列NISGTY(SEQ ID NO:7)之 HVR-H1 序列;含有序列 RX2X3X4X5X6X7X8X9R(SEQ ID 142552.doc -13- 201011047 NO:85)之HVR-H2序列,其中X5為除蘇胺酸以外之任何胺 基酸且X6為除天冬醯胺以外之任何胺基酸;及含有序列 WVGVGFYAMD(SEQ ID NO:9)之HVR-H3序列。在本發明 之另一項實施例中,聚核苷酸編碼含有序列 RX2X3X4X5X6X7X8X9R(SEQ ID NO:84)之HVR-H2序列’其 於χ5處具有絲胺酸,於x6處具有麩胺酸’及/或於χ8處具 有酷胺酸,或其任何組合。在本發明之此態樣之各種實施 例中,圖57中所示之任何具有大於1、5或10之F值的HVR-Η2殘基均為較佳保持為與在bHl-44或bHl-81之HVR-H2之 相同位置(分別為SEQ ID NO:8及5)處發現之殘基相同的殘 基。在其他實施例中,表14中所示之任何具有大於1之 △ △G值的HVR-H2殘基均為較佳保持為與在bHl-44或bHl-81之HVR-H2之相同位置(分別為SEQ ID NO:8及5)處發現 之殘基相同的殘基。 在其他態樣中,本發明提供一種含有含序列 NIAKTISGY(SEQ ID ΝΟ:1)之HVR-L1序列的經分離多肽, 或一種含有含序列NIAKTISGY(SEQ ID ΝΟ:1)之HVR-L1序 列、含序列WGSFLY(SEQ ID NO:2)之HVR-L2序列及/或含 序列HYSSPP(SEQ ID NO:3)之HVR-L3序列的經分離多 肽。在另一態樣中,本發明提供一種多肽,其包含:含有 序列 XJXaXAsXeXAsXgYGEQ ID NO:83)之 HVR-L1 序 列,其中Χι為除天冬胺酸以外之任何胺基酸,X3為除脯胺 酸以外之任何胺基酸,x4為除精胺酸以外之任何胺基酸且 x5為除絲胺酸以外之任何胺基酸。在該態樣之另一項實施 142552.doc •14· 201011047 例中’該多肽含有 HVR-L1 序列 XJXgXAXsXeXyXsXsYCSEQ ID NO:83) ’其中X〗為除天冬胺酸以外之任何胺基酸,χ3 為除脯胺酸以外之任何胺基酸,χ4為除精胺酸以外之任何 胺基酸且X5為除絲胺酸以外之任何胺基酸。視情況而定, 該多肽另外包括含有序列WGSFLY(SEQ ID ΝΟ:2)之HVR-L2序列及/或含有序列HYSSPP(SEQ ID ΝΟ:3)之HVR-L3序 列。在包括含有序列 ID Ν〇:83) 之多肽的任何上述態樣之特定實施例中,於Χι處存在有天 冬醯胺’於X3處存在有丙胺酸,於X4處存在有離胺酸,於 X5處存在有蘇胺酸’於χ7處存在有絲胺酸,及/或於&處 存在有甘胺酸,或其任何組合。在本發明之此態樣之各種 實施例中’圖57中所示之任何具有大於1、5或1〇之f值的 HVR-L1殘基均為較佳保持為與在bHl-44或bHl-81之HVR-L1之相同位置(SEQ ID NO: 1)處發現之殘基相同的殘基。 在其他實施例中,表14中所示之任何具有大值 的HVR-L1殘基均為較佳保持為與在bHl-44或bm-81之 HVR-L1之相同位置(SEQ ID 1^〇:1)處發現之殘基相同的殘 基。 本發明亦提供一種多肽’其包含:含有序列 RX2X3X4X5X6X7X8X9R(SEQ ID NO:85)之HVR-H2序列,其 中X5為除蘇胺酸以外之任何胺基酸且χ6為除天冬醯胺以外 之任何胺基酸。在本發明之另一態樣中,該多肽含有 HVR-H2 序列 RX2x3x4x5x6x7X8X9R(SEq jd Ν〇:85)(其中 X5為除蘇胺酸以外之任何胺基酸且χ 6為除天冬醯胺以外之 142552.doc 15 201011047 任何胺基酸)、含有序列NISGTY(SEQ ID NO:7)之HVR-Hl 序列及含有序列 WVGVGFYAMD(SEQ ID NO:9)之 HVR-H3 序列。在上述態樣之不同實施例中,含有含序列 RX2X3X4X5X6X7X8X9R(SEQ ID NO:84)之HVR-H2序列的多 肽於χ5處具有絲胺酸,於χ6處具有麩胺酸,及/或於X8處 具有酪胺酸,或其任何組合。在本發明之此態樣之各種實 施例中,圖57中所示之任何具有大於1、5或10之F值的 HVR-H2殘基均為較佳保持為與在bH 1 -44或bH 1 -8 1之HVR-H2之相同位置(分別為SEQ ID NO:8及5)處發現之殘基相同 的殘基。在其他實施例中,表14中所示之任何具有大於1 之AAG值的HVR-H2殘基均為較佳保持為與在bHl-44或 bHl-81之HVR-H2之相同位置(分別為SEQ ID NO:8及5)處 發現之殘基相同的殘基。 本發明亦提供一種含有以下序列中之一者、兩者或三者 的多肽:含有序列NISGTY(SEQ ID NO:7)之HVR-H1序 列、含有序列 RIYPSEGYTR(SEQ ID NO:8)之HVR-H2序列 及/或含有序列 WVGVGFYAMD(SEQ ID NO:9)之 HVR-H3 序 列或其任何組合。 在任何上述態樣中,經分離多肽可另外含有以下序列中 之一者、兩者或三者:含有序列NIAKTISGY(SEQ ID ΝΟ:1)之HVR-L1序列;含有序列 NIKDTY(SEQ ID NO:4)之 HVR-H1 ;含有序列 RIYPTNGYTR(SEQ ID NO:5)之 HVR-H2 ;及/或含有序列 WGGDGFYAMD(SEQ ID NO:6)之 HVR-H3,或其任何組合。 142552.doc -16- 201011047 在任何上述態樣中,經分離多肽可另外含有以下序列中 之一者、兩者或三者:含有序列NIAKTISGY(SEQ ID ΝΟ:1)之 HVR-L1 序列;含有序列 WGSFLY(SEQIDNO:2)之 HVR-L2序列;含有序列 HYSSPP(SEQ ID NO:3)之HVR-L3 序列。 在任何上述態樣中,經分離多肽可另外包含:含有序列 NIKDTY(SEQ ID NO:4)之 HVR-H1 ;含有序列 RIYPTNGYTR(SEQ ID NO:5)之 HVR-H2;及/或含有序列 WGGDGFYAMD(SEQ ID NO:6)之 HVR-H3,或其任何組 合。In another embodiment of the invention, the polynucleotide encodes an HVR-H2 sequence comprising the sequence RX2X3X4X5X6X7X8X9R (SEQ ID NO: 85), wherein x5 is any amino acid other than threonine and x6 is in addition to the day Any amino acid other than benzalamine. In another aspect, the invention provides a polynucleotide encoding a sequence comprising the HVR-H1 sequence of the sequence NISGTY (SEQ ID NO: 7); comprising the sequence RX2X3X4X5X6X7X8X9R (SEQ ID 142552.doc -13- 201011047 NO :85) the HVR-H2 sequence, wherein X5 is any amino acid other than threonine and X6 is any amino acid other than aspartame; and HVR containing the sequence WVGVGFYAMD (SEQ ID NO: 9) -H3 sequence. In another embodiment of the invention, the polynucleotide encodes an HVR-H2 sequence comprising the sequence RX2X3X4X5X6X7X8X9R (SEQ ID NO: 84), which has a serine at χ5 and a glutamic acid at x6. / or tartaric acid at χ8, or any combination thereof. In various embodiments of this aspect of the invention, any of the HVR-Η2 residues shown in Figure 57 having an F value greater than 1, 5 or 10 are preferably maintained as in bHl-44 or bHl- The residues found at the same positions of HVR-H2 at 81 (SEQ ID NOS: 8 and 5, respectively) are the same residues. In other embodiments, any of the HVR-H2 residues shown in Table 14 having a ΔΔG value greater than 1 are preferably maintained at the same position as HVR-H2 at bH1-44 or bH1-81 ( Residues identical to those found at SEQ ID NOS: 8 and 5), respectively. In other aspects, the invention provides an isolated polypeptide comprising the HVR-L1 sequence comprising the sequence NIAKTISGY (SEQ ID ΝΟ: 1), or an HVR-L1 sequence comprising the sequence NIAKTISGY (SEQ ID ΝΟ: 1), An isolated polypeptide comprising the HVR-L2 sequence of the sequence WGSFLY (SEQ ID NO: 2) and/or the HVR-L3 sequence comprising the sequence HYSSPP (SEQ ID NO: 3). In another aspect, the invention provides a polypeptide comprising: an HVR-L1 sequence comprising the sequence XJXaXAsXeXAsXgYGEQ ID NO: 83), wherein Χι is any amino acid other than aspartic acid, and X3 is a guanamine Any amino acid other than acid, x4 is any amino acid other than arginine and x5 is any amino acid other than serine. In another embodiment of this aspect 142552.doc •14· 201011047 Example 'The polypeptide contains the HVR-L1 sequence XJXgXAXsXeXyXsXsYCSEQ ID NO: 83) 'where X is any amino acid other than aspartic acid, χ3 In the case of any amino acid other than proline, χ4 is any amino acid other than arginine and X5 is any amino acid other than serine. Optionally, the polypeptide further comprises an HVR-L2 sequence comprising the sequence WGSFLY (SEQ ID ΝΟ: 2) and/or an HVR-L3 sequence comprising the sequence HYSSPP (SEQ ID ΝΟ: 3). In a particular embodiment of any of the above aspects comprising a polypeptide comprising the sequence ID Ν〇: 83), the presence of asparagine at the oxime is at the presence of alanine at X3 and the presence of lysine at X4, The presence of threonine at the X5 is present at the sulphate, and/or the presence of glycine at & or any combination thereof. In various embodiments of this aspect of the invention, any of the HVR-L1 residues shown in Figure 57 having an f-value greater than 1, 5 or 1 均为 are preferably maintained as in bH1-44 or bHl. The residue found at the same position (SEQ ID NO: 1) of HVR-L1 of -81 is the same residue. In other embodiments, any of the HVR-L1 residues shown in Table 14 having a large value are preferably maintained at the same position as HVR-L1 of bH1-44 or bm-81 (SEQ ID 1 〇 :1) Residues found at the same residue. The invention also provides a polypeptide comprising: an HVR-H2 sequence comprising the sequence RX2X3X4X5X6X7X8X9R (SEQ ID NO: 85), wherein X5 is any amino acid other than threonine and χ6 is any other than aspartame Amino acid. In another aspect of the invention, the polypeptide comprises the HVR-H2 sequence RX2x3x4x5x6x7X8X9R (SEq jd Ν〇:85) (wherein X5 is any amino acid other than threonine and χ6 is other than aspartame 142552.doc 15 201011047 Any amino acid), HVR-H1 sequence containing the sequence NISGTY (SEQ ID NO: 7) and HVR-H3 sequence containing the sequence WVGVGFYAMD (SEQ ID NO: 9). In a different embodiment of the above aspect, the polypeptide comprising the HVR-H2 sequence comprising the sequence RX2X3X4X5X6X7X8X9R (SEQ ID NO: 84) has a serine at χ5, glutamic acid at χ6, and/or at X8 Has tyrosine, or any combination thereof. In various embodiments of this aspect of the invention, any of the HVR-H2 residues shown in Figure 57 having an F value greater than 1, 5 or 10 are preferably maintained at bH 1 -44 or bH. Residues of residues found at the same positions of HVR-H2 of 1-8-1 (SEQ ID NOS: 8 and 5, respectively). In other embodiments, any of the HVR-H2 residues shown in Table 14 having an AAG value greater than 1 are preferably maintained at the same position as HVR-H2 at bHl-44 or bHl-81 (respectively The residues found at SEQ ID NOS: 8 and 5) are identical. The invention also provides a polypeptide comprising one, two or three of the following sequences: an HVR-H1 sequence comprising the sequence NISGTY (SEQ ID NO: 7), and an HVR-containing sequence RIYPSEGYTR (SEQ ID NO: 8) H2 sequence and/or HVR-H3 sequence comprising the sequence WVGVGFYAMD (SEQ ID NO: 9) or any combination thereof. In any of the above aspects, the isolated polypeptide may additionally comprise one, two or three of the following sequences: the HVR-L1 sequence comprising the sequence NIAKTISGY (SEQ ID ΝΟ: 1); comprising the sequence NIKDTY (SEQ ID NO: 4) HVR-H1; HVR-H2 comprising the sequence RIYPTNGYTR (SEQ ID NO: 5); and/or HVR-H3 comprising the sequence WGGDGFYAMD (SEQ ID NO: 6), or any combination thereof. 142552.doc -16- 201011047 In any of the above aspects, the isolated polypeptide may additionally comprise one, two or three of the following sequences: an HVR-L1 sequence comprising the sequence NIAKTISGY (SEQ ID ΝΟ: 1); The HVR-L2 sequence of the sequence WGSFLY (SEQ ID NO: 2); the HVR-L3 sequence containing the sequence HYSSPP (SEQ ID NO: 3). In any of the above aspects, the isolated polypeptide may additionally comprise: HVR-H1 comprising the sequence NIKDTY (SEQ ID NO: 4); HVR-H2 comprising the sequence RIYPTNGYTR (SEQ ID NO: 5); and/or containing the sequence WGGDGFYAMD HVR-H3 (SEQ ID NO: 6), or any combination thereof.
在任何上述態樣中,經分離多肽可另外含有一個、兩個 . 或三個HVR序列,其係選自:含有序列NISGTY(SEQ ID NO:7)之 HVR-H1 ;含有序列 RIYPSEGYTR(SEQ ID NO:8) 之HVR-H2序列;及/或含有序列WVGVGFYAMD(SEQ ID NCh9)之HVR-H3,或其任何組合。 在其他態樣中,本發明提供一種經分離多肽,其包含: 含有序列 NIAKTISGY(SEQ ID ΝΟ:1)之 HVR-L1序列及(i)含 有序列WGSFLY(SEQ ID NO:2)之HVR-L2序列或(ii)含有序 歹|J HYSSPP(SEQ ID NO:3)之HVR-L3序列或其兩者;及一 個、兩個或三個HVR序列,其係選自(i)含有序列 NISGTY(SEQ ID NO:7)之 HVR-H1 ; (ii)含有序列 RIYPSEGYTR(SEQ ID NO:8)之HVR-H2;及(iii)含有序列 WVGVGFYAMD(SEQ ID NO:9)之HVR-H3。 在其他態樣中,本發明提供一種經分離多肽,其包含: 142552.doc -17- 201011047 含有序列NIAKTISGY(SEQ ID 1^〇:1)之11乂11-1^1序列及(0含 有序列WGSFLY(SEQ ID NO:2)之HVR-L2序列或(ii)含有序 列HYSSPP(SEQ ID NO:3)之HVR-L3序列或其兩者;及一 個、兩個或三個HVR序列,其係選自:(i)含有序列 NIKDTY(SEQ ID NO:4)之 HVR-H1 ; (ii)含有序列 RIYPTNGYTR(SEQ ID NO:5)之HVR-H2 ;及/或(iii)含有序 列 WGGDGFYAMD(SEQ ID NO:6)之 HVR-H3 或其任何組 合。 在其他態樣中,本發明提供一種含有含序列 NISGTY(SEQ ID NO:7)之HVR-H1序列的經分離多肽、一 種包含含有序列RIYPSEGYTR(SEQ ID NO:8)之HVR-H2序 列的經分離多肽及一種含有含序列WVGVGFYAMD(SEQ ID ΝΟ··9)之HVR-H3序列的經分離多肽。在又一態樣中, 本發明提供一種經分離多肽,其包含:含有序列 NISGTY(SEQ ID NO:7)之 HVR-H1 序列;含有序列 RIYPSEGYTR(SEQ ID NO:8)之HVR-H2序列;及含有序列 WVGVGFYAMD(SEQ ID NO:9)之HVR-H3序列。 在一項實施例中,本發明提供一種含有本發明之任何上 述聚核苷酸之載體。在另一態樣中,本發明提供一種含有 本發明之任何載體之宿主細胞。在一項實施例中,該宿主 細胞為原核的。在另一項實施例中,該宿主細胞為真核 的,例如哺乳動物細胞。 在另一態樣中,本發明提供一種產生上述任何抗體或抗 體片段之方法。該方法包括培養包含含有編碼該抗體之聚 142552.doc .18- 201011047 核苷酸之載體的宿主細胞且回收該抗體。在特定實施例 中,該聚核苷酸編碼含有序列NIAKTISGY(SEQ ID ΝΟ:1) 之HVR-L1序列,且視情況而定,該聚核苷酸另外編碼含 有序列NIKDTY(SEQ ID NO:4)之HVR-H1、含有序列 RIYPTNGYTR(SEQ ID NO:5)之 HVR-H2 及含有序列 WGGDGFYAMD(SEQ ID NO:6)之HVR-H3。在其他實施例 中,該聚核苷酸編碼含有序列NIAKTISGY(SEQ ID ΝΟ:1) 之HVR-L1序列、含有序列 WGSFLY(SEQ ID NO:2)之HVR-L2序列及含有序列HYSSPP(SEQ ID ΝΟ:3)之HVR-L3序 列,且視情況而定,該聚核苷酸另外編碼含有序列 NIKDTY(SEQ ID ΝΟ:4)之HVR-H卜含有序列 RIYPTNGYTR(SEQ ID NO:5)之 HVR-H2 及含有序列 WGGDGFYAMD(SEQ ID NO:6)之HVR-H3。在另一項實施例中,該聚核苷酸編碼含 有序列NIAKTISGY(SEQ ID ΝΟ:1)之HVR-L1序列、含有序 列 NISGTY(SEQ ID NO:7)之 HVR-H1 、含有序列 RIYPSEGYTR(SEQ ID NO:8)之 HVR-H2 及含有序列 WVGVGFYAMD(SEQ ID NO:9)之HVR-H3。在又一項實施 例中,該聚核苷酸編碼含有序列NIAKTISGY(SEQ ID ΝΟ:1)之HVR-L1序列、含有序列 WGSFLY(SEQIDNO:2)之 HVR-L2序列、含有序列 HYSSPP(SEQ ID NO:3)之 HVR-L3 序列、含有序列NISGTY(SEQ ID NO:7)之HVR-H1、含有 序列 RIYPSEGYTR(SEQ ID NO:8)之 HVR-H2及含有序列 WVGVGFYAMD(SEQ ID NO:9)之HVR-H3。 在其他實施例中,該聚核苷酸編碼含有序列 142552.doc -19- 201011047 NISGTY(SEQ ID NO:7)之 HVR-H1 序列、含有序列 RIYPSEGYTR(SEQ ID NO:8)之 HVR-H2序列或含有序列 WVGVGFYAMD(SEQ ID NO:9)之HVR-H3序列。在又一項 實施例中,該聚核苷酸編碼一種多肽,其含有:包含序列 NISGTY(SEQ ID NO:7)之 HVR-H1 序列;含有序列 RIYPSEGYTR(SEQ ID NO:8)之HVR-H2序列;及含有序列 WVGVGFYAMD(SEQ ID NO:9)之HVR-H3序列。 在一項實施例中,該宿主細胞為原核的,且在另一項實 施例中,該宿主細胞為真核的,諸如哺乳動物細胞。 在另一態樣中,本發明提供一種治療個體之腫瘤的方 法。該方法包括向該個體投與本文所述之抗體或抗體片 段,其中該投與所持續之時間以及投與量足以治療或預防 該個體之該腫瘤。在一項實施例中,該腫瘤為結腸直腸腫 瘤、乳癌、肺癌、腎細胞癌、神經膠質瘤、神經膠母細胞 瘤或卵巢癌。在另一項實施例中,該抗體含有含序列 NIAKTISGY(SEQ ID ΝΟ:1)之HVR-L1序列且特異性地結合 HER2及VEGF。根據一項實施例,該抗體另外含有一或兩 個HVR序列,其係選自(i)含有序列WGSFLY(SEQ ID NO:2) 之 HVR-L2 ;及(ii)含有序列 HYSSPP(SEQ ID NO:3)之 HVR-L3。在另一項實施例中,該抗體含有一個、兩個或三個 HVR序歹ij,其係選自(i)含有序列NIKDTY(SEQ ID NO:4)之 HVR-H1 ; (ii)含有序列 RIYPTNGYTR(SEQ ID NO:5)之 HVR-H2 ;及(iii)含有序列 WGGDGFYAMD(SEQ ID NO:6) 之HVR-H3。在另一項實施例中,該抗體含有一個、兩個 142552.doc -20- 201011047In any of the above aspects, the isolated polypeptide may additionally comprise one, two or three HVR sequences selected from the group consisting of: HVR-H1 containing the sequence NISGTY (SEQ ID NO: 7); containing the sequence RIYPSEGYTR (SEQ ID) NO: 8) an HVR-H2 sequence; and/or HVR-H3 comprising the sequence WVGVGFYAMD (SEQ ID NCh9), or any combination thereof. In other aspects, the invention provides an isolated polypeptide comprising: an HVR-L1 sequence comprising the sequence NIAKTISGY (SEQ ID ΝΟ: 1) and (i) a HVR-L2 comprising the sequence WGSFLY (SEQ ID NO: 2) a sequence or (ii) an HVR-L3 sequence comprising the sequence 歹|J HYSSPP (SEQ ID NO: 3) or both; and one, two or three HVR sequences selected from (i) containing the sequence NISGTY ( HVR-H1 of SEQ ID NO: 7); (ii) HVR-H2 comprising the sequence RIYPSEGYTR (SEQ ID NO: 8); and (iii) HVR-H3 containing the sequence WVGVGFYAMD (SEQ ID NO: 9). In other aspects, the invention provides an isolated polypeptide comprising: 142552.doc -17- 201011047 comprising the sequence 11乂11-1^1 of the sequence NIAKTISGY (SEQ ID 1 〇:1) and (0 containing the sequence HVR-L2 sequence of WGSFLY (SEQ ID NO: 2) or (ii) HVR-L3 sequence comprising the sequence HYSSPP (SEQ ID NO: 3) or both; and one, two or three HVR sequences, Selected from: (i) HVR-H1 comprising the sequence NIKDTY (SEQ ID NO: 4); (ii) HVR-H2 comprising the sequence RIYPTNGYTR (SEQ ID NO: 5); and/or (iii) containing the sequence WGGDGFYAMD (SEQ) ID NO: 6) HVR-H3 or any combination thereof. In other aspects, the invention provides an isolated polypeptide comprising the HVR-H1 sequence comprising the sequence NISGTY (SEQ ID NO: 7), one comprising the sequence comprising RYPSEGYTR An isolated polypeptide of the HVR-H2 sequence of (SEQ ID NO: 8) and an isolated polypeptide comprising the HVR-H3 sequence comprising the sequence WVGVGFYAMD (SEQ ID ΝΟ 9). In yet another aspect, the invention provides An isolated polypeptide comprising: an HVR-H1 sequence comprising the sequence NISGTY (SEQ ID NO: 7); an HVR-H2 sequence comprising the sequence RIYPSEGYTR (SEQ ID NO: 8); HVR-H3 sequence of WVGVGFYAMD (SEQ ID NO: 9). In one embodiment, the invention provides a vector comprising any of the above polynucleotides of the invention. In another aspect, the invention provides a Host cell of any of the vectors of the invention. In one embodiment, the host cell is prokaryotic. In another embodiment, the host cell is eukaryotic, such as a mammalian cell. In another aspect The invention provides a method of producing any of the above antibodies or antibody fragments, the method comprising culturing a host cell comprising a vector comprising a polynucleotide encoding the antibody 142552.doc.18-201011047 and recovering the antibody. Wherein the polynucleotide encodes an HVR-L1 sequence comprising the sequence NIAKTISGY (SEQ ID NO: 1), and optionally, the polynucleotide encodes an HVR containing the sequence NIKDTY (SEQ ID NO: 4). H1, HVR-H2 comprising the sequence RIYPTNGYTR (SEQ ID NO: 5) and HVR-H3 comprising the sequence WGGDGFYAMD (SEQ ID NO: 6). In other embodiments, the polynucleotide encoding comprises the sequence NIAKTISGY (SEQ ID ΝΟ: 1) The HVR-L1 sequence, including The HVR-L2 sequence of the sequence WGSFLY (SEQ ID NO: 2) and the HVR-L3 sequence containing the sequence HYSSPP (SEQ ID ΝΟ: 3), and optionally, the polynucleotide encoding the sequence NIKDTY (SEQ HVR-H of ID ΝΟ: 4) contains HVR-H2 of the sequence RIYPTNGYTR (SEQ ID NO: 5) and HVR-H3 containing the sequence WGGDGFYAMD (SEQ ID NO: 6). In another embodiment, the polynucleotide encodes an HVR-L1 sequence comprising the sequence NIAKTISGY (SEQ ID NO: 1), a HVR-H1 sequence comprising the sequence NISGTY (SEQ ID NO: 7), and a sequence containing the RYPSEGYTR (SEQ. ID NO: 8) HVR-H2 and HVR-H3 containing the sequence WVGVGFYAMD (SEQ ID NO: 9). In still another embodiment, the polynucleotide encodes an HVR-L1 sequence comprising the sequence NIAKTISGY (SEQ ID ΝΟ: 1), an HVR-L2 sequence comprising the sequence WGSFLY (SEQ ID NO: 2), and a sequence containing HYSSPP (SEQ ID) NO: 3) HVR-L3 sequence, HVR-H1 containing sequence NISGTY (SEQ ID NO: 7), HVR-H2 containing sequence RIYPSEGYTR (SEQ ID NO: 8), and sequence containing WVGVGFYAMD (SEQ ID NO: 9) HVR-H3. In other embodiments, the polynucleotide encodes an HVR-H1 sequence comprising the sequence 142552.doc -19- 201011047 NISGTY (SEQ ID NO: 7), and an HVR-H2 sequence comprising the sequence RIYPSEGYTR (SEQ ID NO: 8) Or the HVR-H3 sequence containing the sequence WVGVGFYAMD (SEQ ID NO: 9). In still another embodiment, the polynucleotide encodes a polypeptide comprising: an HVR-H1 sequence comprising the sequence NISGTY (SEQ ID NO: 7); HVR-H2 comprising the sequence RIYPSEGYTR (SEQ ID NO: 8) a sequence; and an HVR-H3 sequence comprising the sequence WVGVGFYAMD (SEQ ID NO: 9). In one embodiment, the host cell is prokaryotic, and in another embodiment, the host cell is eukaryotic, such as a mammalian cell. In another aspect, the invention provides a method of treating a tumor in an individual. The method comprises administering to the individual an antibody or antibody fragment described herein, wherein the administration is continued for a time and administered in an amount sufficient to treat or prevent the tumor in the individual. In one embodiment, the tumor is a colorectal tumor, breast cancer, lung cancer, renal cell carcinoma, glioma, glioblastoma or ovarian cancer. In another embodiment, the antibody comprises an HVR-L1 sequence comprising the sequence NIAKTISGY (SEQ ID ΝΟ: 1) and specifically binds HER2 and VEGF. According to one embodiment, the antibody additionally comprises one or two HVR sequences selected from the group consisting of (i) HVR-L2 comprising the sequence WGSFLY (SEQ ID NO: 2); and (ii) comprising the sequence HYSSPP (SEQ ID NO) :3) HVR-L3. In another embodiment, the antibody comprises one, two or three HVR sequences 歹 ij selected from (i) HVR-H1 comprising the sequence NIKDTY (SEQ ID NO: 4); (ii) containing sequences HVR-H2 of RIYPTNGYTR (SEQ ID NO: 5); and (iii) HVR-H3 containing the sequence WGGDGFYAMD (SEQ ID NO: 6). In another embodiment, the antibody contains one, two 142552.doc -20- 201011047
或三個HVR序列,其係選自⑴含有序列NISGTY(SEQ ID NO:7)之 HVR-H1 ; (ii)含有序列 rIYPSeGYTR(SEQ ID NO:8)之HVR-H2 ;及(iii)含有序ID NO:9)之HVR-H3 °在特定實施例中,該抗體包含:含有 NIAKTISGY(SEQ ID ΝΟ:1)之 HVR-L1 序列、含有 WGSFLY(SEQ ID NO:2)之 HVR-L2 序列、含有 HYSSPP(SEQ ID NO:3)之HVR-L3序列、含有NIKDTY(SEQ ID NO:4)之 HVR-H1 序列、含有 RIYPTNGYTR(SEQ ID NO:5)之 HVR-H2 序列及含有 WGGDGFYAMD(SEQ ID NO:6)之HVR-H3序列’且特異性地結合HER2及VEGF。在 另一項實施例中,該抗體包含:含有NIAKTISGY(SEQ ID ΝΟ:1)之 HVR-L1序列、含有 WGSFLY(SEQ ID NO:2)之 HVR-L2序列、含有 HYSSPP(SEQ ID NO:3)之 HVR-L3 序 列、含有 NISGTY(SEQ ID NO:7)之 HVR-H1序列、含有 RIYPSEGYTR(SEQ ID NO:8)之 HVR-H2 序列及含有 WVGVGFYAMD(SEQ ID NO:9)之HVR-H3序列,且特異性 地結合HER2及VEGF。 在一項實施例中,該方法另外包括向該個體投與另一抗 癌療法。在另一項實施例中,該另一抗癌療法包括另一抗 體、化療劑、細胞毒性劑、抗血管生成劑、免疫抑制劑、 前藥、細胞激素、細胞激素拮抗劑、細胞毒性放射線療 法、皮質類固醇、止吐劑、癌症疫苗、止痛劑或生長抑制 劑。 在另一項實施例中,該另一抗癌療法係在投與抗體之前 142552.doc •21 - 201011047 或之後投與。在另一項實施例中,該另一抗癌療法係與抗 體同時投與。 在另一態樣中,本發明提供一種治療個體之自體免疫疾 病的方法。該方法包括向該個體投與本文所述之抗體或抗 體片段,其中該投與所持續之時間以及投與量足以治療或 預防該個體之該自體免疫疾病。在一項實施例中,該抗體 含有含序列NIAKTISGY(SEQ ID ΝΟ:1)之HVR-L1序列,且 特異性地結合HER2及VEGF。根據一項實施例,該抗體含 有一或兩個HVR序列,其係選自⑴含有序列WGSFLY(SEQ着0 ID NO:2)之 HVR-L2 ;及(ii)含有序列 HYSSPP(SEQ ID NO:3)之HVR-L3。在另一項實施例中,該抗體含有一個、 兩個或三個HVR序列,其係選自⑴含有序列NIKDTY(SEQ ID NO:4)之 HVR-H1 ; (ii)含有序列 RIYPTNGYTR(SEQ ID NO:5)之HVR-H2 ;及(iii)含有序列 WGGDGFYAMD(SEQ ID NO:6)之HVR-H3。在另一項實施例中,該抗體含有一個、Or three HVR sequences selected from the group consisting of (1) HVR-H1 comprising the sequence niSGTY (SEQ ID NO: 7); (ii) HVR-H2 comprising the sequence rIYPSeGYTR (SEQ ID NO: 8); and (iii) containing the sequence IDUR: 9) HVR-H3 ° In a particular embodiment, the antibody comprises: an HVR-L1 sequence comprising NIAKTISGY (SEQ ID ΝΟ: 1), an HVR-L2 sequence comprising WGSFLY (SEQ ID NO: 2), HVR-L3 sequence containing HYSSPP (SEQ ID NO: 3), HVR-H1 sequence containing NIKDTY (SEQ ID NO: 4), HVR-H2 sequence containing RIYPTNGYTR (SEQ ID NO: 5), and containing WGGDGFYAMD (SEQ ID NO: 6) The HVR-H3 sequence' and specifically binds to HER2 and VEGF. In another embodiment, the antibody comprises: an HVR-L1 sequence comprising NIAKTISGY (SEQ ID NO: 1), an HVR-L2 sequence comprising WGSFLY (SEQ ID NO: 2), and a HYSSPP (SEQ ID NO: 3) HVR-L3 sequence, HVR-H1 sequence containing NISGTY (SEQ ID NO: 7), HVR-H2 sequence containing RIYPSEGYTR (SEQ ID NO: 8), and HVR-H3 containing WVGVGFYAMD (SEQ ID NO: 9) Sequence, and specifically binds to HER2 and VEGF. In one embodiment, the method additionally comprises administering to the individual another anti-cancer therapy. In another embodiment, the additional anti-cancer therapy comprises another antibody, a chemotherapeutic agent, a cytotoxic agent, an anti-angiogenic agent, an immunosuppressant, a prodrug, a cytokine, a cytokine antagonist, a cytotoxic radiotherapy , corticosteroids, antiemetics, cancer vaccines, analgesics or growth inhibitors. In another embodiment, the additional anti-cancer therapy is administered prior to administration of the antibody 142552.doc • 21 - 201011047 or later. In another embodiment, the additional anti-cancer therapy is administered concurrently with the antibody. In another aspect, the invention provides a method of treating an autoimmune disease in an individual. The method comprises administering to the individual an antibody or antibody fragment described herein, wherein the administration is for a sustained period of time and administered in an amount sufficient to treat or prevent the autoimmune disease in the subject. In one embodiment, the antibody comprises the HVR-L1 sequence comprising the sequence NIAKTISGY (SEQ ID ΝΟ: 1) and specifically binds to HER2 and VEGF. According to one embodiment, the antibody comprises one or two HVR sequences selected from the group consisting of (1) HVR-L2 comprising the sequence WGSFLY (SEQ ID NO: 2); and (ii) the sequence containing HYSSPP (SEQ ID NO: 3) HVR-L3. In another embodiment, the antibody comprises one, two or three HVR sequences selected from the group consisting of (1) HVR-H1 comprising the sequence NIKDTY (SEQ ID NO: 4); (ii) comprising the sequence RIYPTNGYTR (SEQ ID) NO: 5) of HVR-H2; and (iii) HVR-H3 containing the sequence WGGDGFYAMD (SEQ ID NO: 6). In another embodiment, the antibody contains one,
兩個或三個HVR序列,其係選自⑴含有序列NISGTY(SEQ ID NO:7)之 HVR-H1 ; (ii)含有序列 RIYPSEGYTR(SEQ ID ΝΟ:8)之HVR-H2 ;及(iii)含有序列 WVGVGFYAMD(SEQ ID NO:9)之HVR-H3。在特定實施例中,該抗體包含:含有 NIAKTISGY(SEQ ID NChl)之 HVR-L1 序列、含有 WGSFLY(SEQ ID NO:2)之 HVR-L2 序列、含有 HYSSPP(SEQIDNO:3)之HVR-L3序列、含有 NIKDTY(SEQ ID NO:4)之 HVR-H1 序列、含有 RIYPTNGYTR(SEQ ID NO:5)之 HVR-H2 序列及含有 WGGDGFYAMD(SEQ ID 142552.doc -22- 201011047 NO:6)之HVR-H3序列,且特異性地結合HER2及VEGF,或 該抗體含有:包含NIAKTISGY(SEQIDNO:l)之HVR-L1序 列、含有 WGSFLY(SEQ ID NO:2)之 HVR-L2序列、含有 HYSSPP(SEQ ID NO:3)之HVR-L3序列、含有NISGTY(SEQ ID NO:7)之 HVR-H1 序列、含有 RIYPSEGYTR(SEQ ID NO:8)之 HVR-H2 序列及含有 WVGVGFYAMD(SEQ ID NO:9)之HVR-H3序列,且特異性地結合HER2及VEGF。 在又一態樣中,本發明提供一種治療個體之涉及HER2 異常活化的非惡性疾病之方法。該方法包括向該個體投與 本文所述之抗體或抗體片段,其中該投與所持績之時間以 及投與量足以治療或預防該個體之該非惡性疾病。在一項 實施例中,該抗體含有含序列NIAKTISGY(SEQ ID ΝΟ:1) 之HVR-L1序列,且特異性地結合HER2及VEGF。根據一 項實施例,該抗體包含一或兩個HVR序列,其係選自⑴含 有序列 WGSFLY(SEQ ID NO:2)之HVR-L2 ;及(ii)含有序列 HYSSPP(SEQ ID NO:3)之 HVR-L3。在另一項實施例中, 該抗體另外含有一個、兩個或三個HVR序列,其係選自⑴ 含有序列NIKDTY(SEQ ID NO:4)之HVR-H1 ; (ii)含有序列 RIYPTNGYTR(SEQ ID NO:5)之 HVR-H2;及(iii)含有序列 WGGDGFYAMD(SEQ ID NO:6)之 HVR-H3。在另一項實施 例中’該抗體含有一個、兩個或三個HVR序列,其係選自 ⑴含有序列 NISGTY(SEQ ID NO:7)之HVR-H1 ; (ii)含有序 列 RIYPSEGYTR(SEQ ID NO:8)之 HVR-H2;及(iii)含有序 列 WVGVGFYAMD(SEQ ID NO:9)之 HVR-H3。在特定實施 142552.doc -23- 201011047 例中,該抗體包含:含有NIAKTISGY(SEQ ID ΝΟ:1)之 HVR-L1序列、含有 WGSFLY(SEQ ID NO:2)之HVR-L2 序 列、含有 HYSSPP(SEQ ID NO:3)之 HVR-L3序列、含有 NIKDTY(SEQ ID NO:4)之 HVR-H1 序列、含有 RIYPTNGYTR(SEQ ID NO:5)之 HVR-H2 序列及含有 WGGDGFYAMD(SEQ ID NO:6)之HVR-H3序列,且特異性 地結合HER2及VEGF, 或該抗體含有:包含 NIAKTISGY(SEQ ID ΝΟ:1)之 HVR-L1序列、含有 WGSFLY(SEQ ID NO:2)之 HVR-L2 序列、含有 HYSSPP(SEQ ID NO:3)之❿馨 HVR-L3序列、含有NISGTY(SEQ ID NO:7)之 HVR-H1 序 列、含有 RIYPSEGYTR(SEQ ID NO:8)之HVR-H2序列及含 有 WVGVGFYAMD(SEQ ID NO:9)之 HVR-H3序列,且特異 性地結合HER2及VEGF。 本發明之其他態樣提供本文所述之抗體及抗艎片段用於 治療個體之涉及HER2異常活化的腫瘤、自體免疫疾病或 非惡性疾病之用途,以及用於製造用以治療個體之涉及 HER2異常活化的腫瘤、自體免疫疾病或非惡性疾病之藥Ο 物之用途。在該等用途之一項實施例中,該抗體含有含序 列NIAKTISGY(SEQ ID ΝΟ:1)之HVR-L1序列,且特異性地 結合HER2及VEGF。根據一項實施例,該抗體另外含有一 或兩個HVR序列,其係選自⑴含有序列WGSFLY(SEQ ID NO:2)之 HVR-L2;及(ii)含有序列 HYSSPP(SEQ ID NO:3)Two or three HVR sequences selected from the group consisting of (1) HVR-H1 comprising the sequence NISGTY (SEQ ID NO: 7); (ii) HVR-H2 comprising the sequence RIYPSEGYTR (SEQ ID ΝΟ: 8); and (iii) HVR-H3 containing the sequence WVGVGFYAMD (SEQ ID NO: 9). In a particular embodiment, the antibody comprises: an HVR-L1 sequence comprising NIAKTISGY (SEQ ID NO: 2), an HVR-L2 sequence comprising WGSFLY (SEQ ID NO: 2), and an HVR-L3 sequence comprising HYSSPP (SEQ ID NO: 3) HVR-H1 sequence containing NIKDTY (SEQ ID NO: 4), HVR-H2 sequence containing RIYPTNGYTR (SEQ ID NO: 5), and HVR- containing WGGDGFYAMD (SEQ ID 142552.doc -22-201011047 NO: 6) H3 sequence, and specifically binds to HER2 and VEGF, or the antibody comprises: HVR-L1 sequence comprising NIAKTISGY (SEQ ID NO: 1), HVR-L2 sequence containing WGSFLY (SEQ ID NO: 2), containing HYSSPP (SEQ ID NO: 3) HVR-L3 sequence, HVR-H1 sequence containing NISGTY (SEQ ID NO: 7), HVR-H2 sequence containing RIYPSEGYTR (SEQ ID NO: 8), and WVGVGFYAMD (SEQ ID NO: 9) HVR-H3 sequence, and specifically binds to HER2 and VEGF. In yet another aspect, the invention provides a method of treating a non-malignant disease involving abnormal activation of HER2 in an individual. The method comprises administering to the individual an antibody or antibody fragment described herein, wherein the time of administration and the amount administered are sufficient to treat or prevent the non-malignant disease in the individual. In one embodiment, the antibody comprises the HVR-L1 sequence comprising the sequence NIAKTISGY (SEQ ID ΝΟ: 1) and specifically binds to HER2 and VEGF. According to one embodiment, the antibody comprises one or two HVR sequences selected from the group consisting of (1) HVR-L2 comprising the sequence WGSFLY (SEQ ID NO: 2); and (ii) comprising the sequence HYSSPP (SEQ ID NO: 3) HVR-L3. In another embodiment, the antibody further comprises one, two or three HVR sequences selected from the group consisting of (1) HVR-H1 comprising the sequence NIKDTY (SEQ ID NO: 4); (ii) the sequence RIYPTNGYTR (SEQ) ID NO: 5) HVR-H2; and (iii) HVR-H3 containing the sequence WGGDGFYAMD (SEQ ID NO: 6). In another embodiment, the antibody comprises one, two or three HVR sequences selected from the group consisting of (1) HVR-H1 comprising the sequence NISGTY (SEQ ID NO: 7); (ii) comprising the sequence RIYPSEGYTR (SEQ ID) NO: 8) of HVR-H2; and (iii) HVR-H3 containing the sequence WVGVGFYAMD (SEQ ID NO: 9). In a specific example 142552.doc -23-201011047, the antibody comprises: an HVR-L1 sequence comprising NIAKTISGY (SEQ ID ΝΟ: 1), an HVR-L2 sequence comprising WGSFLY (SEQ ID NO: 2), and a HYSSPP (including HVR-L3 sequence of SEQ ID NO: 3), HVR-H1 sequence containing NIKDTY (SEQ ID NO: 4), HVR-H2 sequence containing RIYPTNGYTR (SEQ ID NO: 5), and WGGDGFYAMD (SEQ ID NO: 6) HVR-H3 sequence, and specifically binds to HER2 and VEGF, or the antibody comprises: HVR-L1 sequence comprising NIAKTISGY (SEQ ID ΝΟ: 1), HVR-L2 sequence containing WGSFLY (SEQ ID NO: 2) The HVR-L3 sequence containing HYSSPP (SEQ ID NO: 3), the HVR-H1 sequence containing NISGTY (SEQ ID NO: 7), the HVR-H2 sequence containing RIYPSEGYTR (SEQ ID NO: 8), and WVGVGFYAMD The HVR-H3 sequence of (SEQ ID NO: 9), and specifically binds to HER2 and VEGF. Other aspects of the invention provide the use of the antibodies and anti-sputum fragments described herein for the treatment of a tumor, autoimmune disease or non-malignant disease involving abnormal activation of HER2 in an individual, and for the manufacture of HER2 for the treatment of an individual Use of an abnormally activated tumor, an autoimmune disease, or a drug for a non-malignant disease. In one embodiment of such use, the antibody comprises an HVR-L1 sequence comprising the sequence NIAKTISGY (SEQ ID ΝΟ: 1) and specifically binds to HER2 and VEGF. According to one embodiment, the antibody additionally comprises one or two HVR sequences selected from the group consisting of (1) HVR-L2 comprising the sequence WGSFLY (SEQ ID NO: 2); and (ii) the sequence comprising HYSSPP (SEQ ID NO: 3) )
之HVR-L3。在另一項實施例中,該抗體含有一個、兩個 或三個HVR序列,其係選自⑴含有序列NIKDTY(SEQ ID 142552.doc •24- 201011047 NO:4)之 HVR-Hl ; (ii)含有序列 riyptNGYTR(SEQ ID NO:5)之 HVR-H2 ;及(iii)含有序列 WGGDGFYAMD(SEQ ID NO:6)之HVR-H3。在另一項實施例中,該抗體含有一個、 兩個或三個HVR序列,其係選自⑴含有序列NISGTY(SEQ ID NO:7)之 HVR-Hl ; (ii)含有序列 riypsEGYTR(SEQ ID NO:8)之HVR-H2 ;及(iii)含有序列 WVGVGFYAMD(SEQ ID ΝΟ··9)之HVR-H3。在特定實施例中,該抗體包含··含有 NIAKTISGY(SEQ ID ΝΟ:1)之HVR-L1序列、含有 WGSFLY(SEQ ID NO:2)之 HVR-L2 序列、含有 HYSSPP(SEQ ID NO:3)之 HVR-L3序列、含有NIKDTY(SEQ ID NO:4)之 HVR-Hl 序 列、含有RIYPTNGYTR(SEQ ID NO:5)之HVR-H2序列及含 • 有 WGGDGFYAMD(SEQ ID NO:6)之 HVR-H3 序列,且特異 性地結合HER2及VEGF,或該抗體包含:含有 NIAKTISGY(SEQ ID ΝΟ:1)之HVR-L1序列、含有 WGSFLY(SEQ ID NO:2)之 HVR-L2序列、含有HYSSPP(SEQ ID NO:3)之 HVR-L3序列、含有NISGTY(SEQ ID NO:7)之 HVR-Hl 序 列、含有RIYPSEGYTR(SEQ ID NO:8)之HVR-H2序列及含 有 WVGVGFYAMD(SEQ ID NO:9)之HVR-H3序列,且特異 性地結合HER2及VEGF。 在本文所述之治療涉及HER2異常活化之腫瘤、自體免 疫疾病或非惡性疾病的方法之一項實施例中,該個體為人 類。 此外,涵蓋包含本文所述之抗體及抗體片段的套組、組 合物及製造物品。 142552.doc •25- 201011047 【實施方式】 本發明提供製造多重特異性抗體及抗體片段之方法,以 及使用該等方法識別之抗體及其用途。一般而言,本發明 之方法包含使抗體之輕鏈可變域或重鏈可變域多樣化以產 生可於文庫中穩定表現之變異體。隨後自此文庫中選出能 夠特異性地結合兩個抗原決定基之多樣化抗體且作進一步 表徵。 使用本發明之方法識別之例示性抗體包括結合HER2(人 類表皮生長因子受體2)與VEGF(血管内皮生長因子)兩者之 抗體。特定言之,本文所述之資料(例如在下文實例中)展 示HER2抗體之輕鏈互補決定區(CDR)之突變可賦予對無關 蛋白抗原以及HER2之雙重結合能力。一種雙特異性高親 和性HER2/VEGF抗體已經廣泛表徵。此外,展示與HER2 及VEGF複合之該雙特異性Fab的晶體結構且評估突變誘發 對Fab殘基之能量貢獻。兩個抗原之結合位點廣泛重疊; 接觸HER2之大多數CDR殘基亦咬合VEGF。然而,在能量 上,重鏈之殘基支配HER2特異性,而輕鏈支配VEGF特異 性。 HER2/VEGF雙特異性抗體於活體外及活體内抑制HER2 及VEGF介導之細胞增殖。該等結果表明改變抗體之輕鏈 可變域的序列可產生具有雙特異性及功能之抗體。例如, bHl-44及bHl-81具有靶向兩種腫瘤進程機制之潛力:由 HER2介導之腫瘤細胞增殖及由VEGF介導之腫瘤血管生 成。以單一抗體共靶向兩個抗原為組合療法之一種替代選 142552.doc -26- 201011047 擇。 ι.定義HVR-L3. In another embodiment, the antibody comprises one, two or three HVR sequences selected from the group consisting of: (1) HVR-H1 comprising the sequence NIKDTY (SEQ ID 142552.doc • 24-201011047 NO: 4); HVR-H2 comprising the sequence riyptNGYTR (SEQ ID NO: 5); and (iii) HVR-H3 comprising the sequence WGGDGFYAMD (SEQ ID NO: 6). In another embodiment, the antibody comprises one, two or three HVR sequences selected from the group consisting of (1) HVR-H1 comprising the sequence NISGTY (SEQ ID NO: 7); (ii) comprising the sequence riypsEGYTR (SEQ ID) NO: 8) HVR-H2; and (iii) HVR-H3 containing the sequence WVGVGFYAMD (SEQ ID ΝΟ··9). In a particular embodiment, the antibody comprises: an HVR-L1 sequence comprising NIAKTISGY (SEQ ID NO: 1), an HVR-L2 sequence comprising WGSFLY (SEQ ID NO: 2), and a HYSSPP (SEQ ID NO: 3) HVR-L3 sequence, HVR-H1 sequence containing NIKDTY (SEQ ID NO: 4), HVR-H2 sequence containing RIYPTNGYTR (SEQ ID NO: 5), and HVR containing WGGDGFYAMD (SEQ ID NO: 6) H3 sequence, and specifically binds to HER2 and VEGF, or the antibody comprises: HVR-L1 sequence containing NIAKTISGY (SEQ ID ΝΟ: 1), HVR-L2 sequence containing WGSFLY (SEQ ID NO: 2), containing HYSSPP ( The HVR-L3 sequence of SEQ ID NO: 3), the HVR-H1 sequence containing NISGTY (SEQ ID NO: 7), the HVR-H2 sequence containing RIYPSEGYTR (SEQ ID NO: 8), and WVGVGFYAMD (SEQ ID NO: 9) The HVR-H3 sequence, and specifically binds to HER2 and VEGF. In one embodiment of the method of treating a tumor, autoimmune disease or non-malignant disease involving aberrant activation of HER2 as described herein, the individual is a human. In addition, kits, compositions, and articles of manufacture comprising the antibodies and antibody fragments described herein are contemplated. 142552.doc • 25- 201011047 [Embodiment] The present invention provides methods for producing multispecific antibodies and antibody fragments, and antibodies recognized by the methods and uses thereof. In general, the methods of the invention comprise diversifying the light chain variable domain or heavy chain variable domain of an antibody to produce a variant that is stable in the library. Diversified antibodies that specifically bind to two epitopes were subsequently selected from this library and further characterized. Exemplary antibodies recognized using the methods of the present invention include antibodies that bind to both HER2 (human epidermal growth factor receptor 2) and VEGF (vascular endothelial growth factor). In particular, the information described herein (e.g., in the Examples below) demonstrates that mutations in the light chain complementarity determining regions (CDRs) of the HER2 antibody confer dual binding ability to the unrelated protein antigen and HER2. A bispecific high affinity HER2/VEGF antibody has been extensively characterized. In addition, the crystal structure of this bispecific Fab complexed with HER2 and VEGF was displayed and the energy contribution of the mutation-induced Fab residue was evaluated. The binding sites for the two antigens overlap extensively; most of the CDR residues that contact HER2 also occlude VEGF. However, in terms of energy, the residues of the heavy chain dominate the HER2 specificity, while the light chain dominates the VEGF specificity. The HER2/VEGF bispecific antibody inhibits HER2 and VEGF-mediated cell proliferation in vitro and in vivo. These results indicate that altering the sequence of the light chain variable domain of an antibody produces antibodies with bispecificity and function. For example, bHl-44 and bHl-81 have the potential to target two tumor progression mechanisms: tumor cell proliferation mediated by HER2 and tumor angiogenesis mediated by VEGF. Co-targeting two antigens with a single antibody is an alternative to combination therapy 142552.doc -26- 201011047. ι.Definition
術語「多重特異性抗體」係以最廣泛意義使用且具體涵 蓋包含重鏈可變域(VH)及輕鏈可變域(vL)之抗體,其中 VHVL單元具有多抗原決定基特異性(亦即,能夠結合至一 個生物分子上之兩個不同抗原決定基或不同生物分子上之 每一抗原決疋基)。該等多重特異性抗體包括(但不限於)全 長抗體、具有兩個或兩個以上VL&VH域之抗體、諸如 Fab、Fv、dsFv、scFv、雙功能抗體、雙特異性雙功能抗 體及二功此抗體之抗體片段、經共價或非共價連接之抗體 片段。「多抗原決定基特異性」係指特異性地結合至相同 或不同標把上之兩個或兩個以上不同抗原決定基的能力。 「單特異性」係指僅結合一個抗原決定基之能力。根據一 項實施例’多重特異性抗體為以5 μΜ至0.001 pM、3 μΜ至 0.001 ρΜ、1 μΜ至 0.001 ρΜ、〇·5 μΜ至 0.001 ρΜ或 0.1 μΜ 至0.001 ρΜ之親和性結合至每一抗原決定基的IgGl形式。 基本4鏈抗體單元為由兩個相同輕鏈及兩個相同重 (H)鏈構成之異源四聚醣蛋白(IgM抗體由5個基本異源四聚 體單元以及另一稱作J鏈之多肽組成,且因此含有1〇個抗 原結合位點’而所分泌之IgA抗體可聚合以形成包含2至5 個基本4鏈單元以及J鏈之多價集合體)。在1§〇之情況下, 4鏈單元一般為約15〇,〇〇〇道爾頓(dalton)。每一L鏈均由一 個共價雙硫鍵連接至Η鏈,而兩個Η鏈視Η鏈同型而定經由 一或多個雙硫鍵彼此連接。每一 Η鏈及L鏈亦具有規律間 142552.doc -27- 201011047 隔之鏈内雙硫橋。每一H鏈於]^末端具有可變域(Vh),其後 對於α&γ鏈之各者而言為三個恆定域(CH)且對於μ及ε同型 而言為四個CH域。每一l鏈於ν末端具有可變域(VL),其後 在其另一末端為恆定域(Cl) ^ vl係與vH對準且(^係與重鏈 之第一 ‘I·互定域(CH1)對準。咸信特定胺基酸殘基在輕鏈與 重鏈可變域之間形成一界面。Vh與VL之配對一起形成單一 抗原結合位點。關於不同類別的抗體之結構及特性,參見 例如 Basic and Clinical Immunology,第 8版,Daniel P.The term "multispecific antibody" is used in the broadest sense and specifically encompasses antibodies comprising a heavy chain variable domain (VH) and a light chain variable domain (vL), wherein the VHVL unit has multiple epitope specificity (ie, , capable of binding to two different epitopes on one biomolecule or each antigen on a different biomolecule). Such multispecific antibodies include, but are not limited to, full length antibodies, antibodies having two or more VL&VH domains, such as Fab, Fv, dsFv, scFv, bifunctional antibodies, bispecific bifunctional antibodies, and An antibody fragment of such an antibody, a covalently or non-covalently linked antibody fragment. "Multiple epitope specificity" refers to the ability to specifically bind to two or more different epitopes on the same or different targets. "Monospecific" refers to the ability to bind only one epitope. According to one embodiment, the multispecific antibody binds to each of 5 μΜ to 0.001 pM, 3 μΜ to 0.001 ρΜ, 1 μΜ to 0.001 ρΜ, 〇·5 μΜ to 0.001 ρΜ or 0.1 μΜ to 0.001 ρΜ. The IgGl form of the epitope. A basic 4-chain antibody unit is a heterotetrameric glycoprotein composed of two identical light chains and two identical heavy (H) chains (IgM antibodies are composed of 5 basic heterotetramer units and the other is referred to as J-chain The polypeptide consists of, and thus contains, one antigen binding site' and the secreted IgA antibody can be polymerized to form a multivalent aggregate comprising 2 to 5 basic 4-chain units and a J chain. In the case of 1 § ,, the 4-chain unit is typically about 15 〇, dalton. Each L chain is linked to the oxime chain by a covalent disulfide bond, and the two oxime chains are linked to each other via one or more disulfide bonds depending on the oxime chain isotype. Each Η chain and L chain also has a regular interval 142552.doc -27- 201011047. Each H chain has a variable domain (Vh) at the end of the ^, followed by three constant domains (CH) for each of the α & gamma chains and four CH domains for the μ and ε isotypes. Each l chain has a variable domain (VL) at the ν terminus, and is followed by a constant domain (Cl) at its other end. The vl system is aligned with vH and (the first and the first of the heavy chain are 'I· Domain (CH1) alignment. The specific amino acid residue forms an interface between the light chain and the heavy chain variable domain. The pairing of Vh and VL together form a single antigen binding site. And characteristics, see for example Basic and Clinical Immunology, 8th edition, Daniel P.
Stites,Abba I. Terr及 Tristram G. Parslow(編),Appleton & ❿· Lange,Norwalk,CT,1994,第 71 頁及第 6章。 任何脊椎動物物種之L鏈基於其恒定域之胺基酸序列均 可歸屬於兩種明顯不同的類型(稱作 <及λ)中之一種。免疫 球蛋白視其重鏈之恆定域(CH)的胺基酸序列而定可歸屬於 不同類別或同型。存在五類免疫球蛋白:IgA、igD、Stites, Abba I. Terr and Tristram G. Parslow (ed.), Appleton & ❿ Lange, Norwalk, CT, 1994, pp. 71 and 6. The amino acid sequence of the L chain of any vertebrate species based on its constant domain can be assigned to one of two distinct types (referred to as < and λ). Immunoglobulins may be assigned to different classes or isotypes depending on the amino acid sequence of the constant domain (CH) of their heavy chain. There are five types of immunoglobulins: IgA, igD,
IgE、IgG及IgM ’其分別具有命名為α、δ、γ、ε及μ之重 鍵° 7及α類別基於cH序列及功能之相對微小的差異而被IgE, IgG, and IgM' have heavy bonds named α, δ, γ, ε, and μ, respectively, and the α class is based on relatively small differences in cH sequences and functions.
進一步分成亞類,例如人類表現以下亞類·· IgGl、IgG2、 IgG3、IgG4、IgAl 及 IgA2。 術語「可變」係指可變域之某些區段的序列在抗體之間 廣泛不同的事實。V域介導抗原結合且確定特定抗體對其 特定抗原之特異性。然而,可變性在可變域之11 〇個胺基 酸跨度上並非均勻分布。實情為,V區由具有15至30個胺 基酸且稱作構架區(FR)之相對不變的一段序列構成,該等 構架區被長度各為9至12個胺基酸之稱作「高變區」的具 H2552.doc -28- 201011047 極端可變性之較短區所分隔開。天然重鏈及輕鏈之可變域 各自包含四個主要採用β摺疊構型、藉由三個高變區連接 之FR,該等高變區形成連接β摺疊結構之環,且在一些情 況下形成β摺疊結構之部分。每一鏈中之高變區經由FR極 接近地固持在一起,且與另一鏈之高變區一起促使抗體之 抗原結合位點形成(參見Kabat等人,Sequences of Proteins of Immunological Interest,第 5版,Public Health Service,National Institutes of Health, Bethesda, MD. (1991))。怪定域並不直接涉 及使抗體與抗原結合,但展現各種效應功能,諸如使抗體 參與抗體依賴性細胞毒性(ADCC)。Further divided into subclasses, for example, humans exhibit the following subclasses IgGl, IgG2, IgG3, IgG4, IgAl, and IgA2. The term "variable" refers to the fact that the sequences of certain segments of the variable domain vary widely between antibodies. The V domain mediates antigen binding and determines the specificity of a particular antibody for its particular antigen. However, the variability is not evenly distributed over the 11 amino acid spans of the variable domain. In fact, the V region consists of a relatively invariant sequence of 15 to 30 amino acids called the framework regions (FR), which are called 9 to 12 amino acids each. The hypervariable zone is separated by a shorter zone of extreme variation of H2552.doc -28- 201011047. The variable domains of the native heavy and light chains each comprise four FRs that are predominantly joined by a beta-sheet configuration, joined by three hypervariable regions, which form a loop connecting the beta-sheet structure, and in some cases Forming a portion of the beta sheet structure. The hypervariable regions in each chain are held together in close proximity by the FR and, together with the hypervariable regions of the other chain, promote the formation of antigen binding sites for antibodies (see Kabat et al., Sequences of Proteins of Immunological Interest, section 5). Edition, Public Health Service, National Institutes of Health, Bethesda, MD. (1991)). Strange localization is not directly related to binding antibodies to antigens, but exhibits various effector functions, such as the involvement of antibodies in antibody-dependent cellular cytotoxicity (ADCC).
術語「高變區」在本文中使用時係指抗體之負責抗原結 合的胺基酸殘基。高變區通常包含「互補決定區」或 「CDR」之胺基酸殘基(例如,於VL中在約殘基24-34(L1)、50-56(L2)及89-97(L3)周圍,且於VH中在約殘基 26-35(Η1)、50-65(H2)及 95-102(H3)周圍(在一項實施例 中,H1係在約殘基3 1-35周圍);Kabat等人,Sequences of Proteins of Immunological Interest,第 5 版,PublicThe term "hypervariable region" as used herein, refers to an amino acid residue of an antibody responsible for antigen binding. The hypervariable region typically contains an amino acid residue of the "complementarity determining region" or "CDR" (eg, at about residues 24-34 (L1), 50-56 (L2), and 89-97 (L3) in VL. Surrounding, and in VH around about residues 26-35 (Η1), 50-65 (H2), and 95-102 (H3) (in one embodiment, H1 is around about residues 1 1-35) ); Kabat et al., Sequences of Proteins of Immunological Interest, 5th edition, Public
Health Service, National Institutes of Health, Bethesda, MD. (1991))及/或「高變環」之彼等殘基(例如,於VL中為 殘基 26-32(Ll) ' 50-52(L2)及 91-96(L3),且於 VH 中為 26-32(H1)、53-55(H2)及 96-101(H3); Chothia及 Lesk,J. Mol· Biol. 196:901-917 (1987))。 「構架區」(FR)為除CDR殘基以外之彼等可變域殘基。 每一可變域一般具有四個標識為FR1、FR2、FR3及FR4之 142552.doc -29- 201011047 FR。若根據Kabat來定義CDR,則輕鏈FR殘基係位於約殘 基 1-23(LCFR1)、35-49(LCFR2)、57-88(LCFR3)及 98-107(LCFR4)處,且重鏈FR殘基係位於重鏈殘基中之約殘 基 1-30(HCFR1)、36-49(HCFR2)、66-94(HCFR3)及 103-113(HCFR4)處。若CDR包含高變環之胺基酸殘基,則輕鏈 FR殘基係位於輕鏈中之約殘基1-25(LCFR1)、33-49(LCFR2)、53-90(LCFR3)及 97-107(LCFR4)處,且重鏈 FR殘基係位於重鏈殘基中之約殘基1-25(HCFRI)、33-52(HCFR2)、56-95(HCFR3)及 102-113(HCFR4)處。在某些 情況下,當CDR包含如Kabat所定義之CDR之胺基酸及高 變環之胺基酸兩者時,FR殘基將相應地經調整。例如,當 CDRH1包括胺基酸H26-H35時,重鏈FR1殘基係位於1-25 位且FR2殘基係位於36-49位。 「人類共同構架」為表示在人類免疫球蛋白VL或VH構 架序列之選擇中最常出現之胺基酸殘基的構架。通常,人 類免疫球蛋白VL或VH序列之選擇係來自可變域序列之亞 群。通常,序列之亞群為如Kabat中之亞群。在一項實施 例中,對於VL而言,亞群為如Kabat中之亞群κ I。在一項 實施例中,對於VH而言,亞群為如Kabat中之亞群ΙΠ。 如本文中所用之術語「單株抗體」係指來自一群大體上 均質之抗體的抗體’亦即,構成該群之個別抗體除可能在 單株抗體產生期間產生且一般以微量存在之可能變異體以 外實質上為相同的且結合相同抗原決定基。該單株抗體一 般包括包含結合標靶之可變區的抗體,其中該抗體係藉由 142552.doc •30- 201011047 自複數個抗體中選擇抗體之方法而獲得。例如,選擇方法 可為自複數個純系(諸如融合瘤純系、噬菌體純系或重組 DNA純系之集合)中選擇出獨特純系。應瞭解,所選抗體 可經進一步修改(例如)以改良對標靶之親和性,人類化抗 體,改良其在細胞培養物中之產生,減少其活體内免疫原 性,產生多重特異性抗體等,且應瞭解包含經修改可變區 序列之抗體亦為本發明之單株抗體。除其特異性以外,單 株抗體製劑之有利之處在於其一般未受其他免疫球蛋白污 染。修飾語「單株」表示如自大體上同源之抗體群體所獲 得之抗體的特徵,且不欲解釋為需要藉由任何特定方法來 產生抗體。例如,根據本發明欲使用之單株抗體可由各種 • 技術來製造,包括融合瘤方法(例如,Kohler等人,Health Service, National Institutes of Health, Bethesda, MD. (1991)) and/or their residues of the "hypervariable loop" (eg, residues 26-32 (Ll) in VL '50-52 (L2) And 91-96 (L3), and in VH are 26-32 (H1), 53-55 (H2) and 96-101 (H3); Chothia and Lesk, J. Mol· Biol. 196:901-917 (1987)). "Framework regions" (FR) are those variable domain residues other than CDR residues. Each variable domain typically has four 142552.doc -29- 201011047 FRs identified as FR1, FR2, FR3, and FR4. If the CDRs are defined according to Kabat, the light chain FR residues are located at about residues 1-23 (LCFR1), 35-49 (LCFR2), 57-88 (LCFR3), and 98-107 (LCFR4), and the heavy chain The FR residues are located at about residues 1-30 (HCFR1), 36-49 (HCFR2), 66-94 (HCFR3), and 103-113 (HCFR4) in the heavy chain residues. If the CDR comprises a hypervariable cyclic amino acid residue, the light chain FR residue is located in the light chain at about residues 1-25 (LCFR1), 33-49 (LCFR2), 53-90 (LCFR3) and 97 -107 (LCFR4), and the heavy chain FR residues are located at about residues 1-25 (HCFRI), 33-52 (HCFR2), 56-95 (HCFR3), and 102-113 (HCFR4) in the heavy chain residues. ). In certain instances, when the CDR comprises both an amino acid such as the CDR of Kabat and an amino acid of a hypervariable ring, the FR residue will be adjusted accordingly. For example, when CDRH1 comprises the amino acid H26-H35, the heavy chain FR1 residue is at positions 1-25 and the FR2 residue is at positions 36-49. "Human common framework" is a framework representing the most frequently occurring amino acid residues in the selection of human immunoglobulin VL or VH framework sequences. Typically, the selection of human immunoglobulin VL or VH sequences is from a subset of variable domain sequences. Typically, the subpopulation of sequences is a subgroup such as in Kabat. In one embodiment, for VL, the subpopulation is a subgroup κ I as in Kabat. In one embodiment, for VH, the subpopulation is a subgroup such as Kabat. The term "monoclonal antibody" as used herein refers to an antibody from a population of substantially homogeneous antibodies', ie, possible variants of the individual antibodies that make up the group, except that may be produced during the production of a monoclonal antibody and are generally present in minor amounts. It is substantially identical except for the same and binds to the same epitope. The monoclonal antibody generally comprises an antibody comprising a variable region that binds to a target, wherein the anti-system is obtained by selecting an antibody from a plurality of antibodies by 142552.doc • 30- 201011047. For example, the selection method may select a unique pure line from a plurality of pure lines (such as a fusion tumor pure line, a phage pure line, or a collection of recombinant DNA pure lines). It will be appreciated that selected antibodies may be further modified, for example, to improve affinity for the target, to humanize the antibody, to improve its production in cell culture, to reduce its in vivo immunogenicity, to generate multiple specific antibodies, etc. And it should be understood that the antibody comprising the modified variable region sequence is also a monoclonal antibody of the invention. In addition to its specificity, monoclonal antibody preparations are advantageous in that they are generally not contaminated by other immunoglobulins. The modifier "single plant" means the characteristics of an antibody obtained from a population of substantially homologous antibodies and is not intended to be construed as requiring production of the antibody by any particular method. For example, monoclonal antibodies to be used in accordance with the present invention can be made by a variety of techniques, including fusion knob methods (e.g., Kohler et al.,
Nature, 256:495 (1975) ; Harlow 等人,Antibodies: ANature, 256:495 (1975) ; Harlow et al., Antibodies: A
Laboratory Manual, (Cold Spring Harbor Laboratory Press,第 2版,1988) ; Hammerling 等人,於 MonoclonalLaboratory Manual, (Cold Spring Harbor Laboratory Press, 2nd ed., 1988); Hammerling et al., Monoclonal
Antibodies and T- Cell Hybridomas 563-681(Elsevier, N.Y., 1981)中)、重組DNA方法(參見,例如美國專利第4,816,567 號)、嗤菌體呈現技術(參見,例如Clackson等人,Nature, 352:624-628 (1991) ; Marks等人,J. Mol· Biol·, 222:581-597 (1991) ; Sidhu等人,J. Mol. Biol. 338(2):299-310 (2004); Lee等人,J. Mol. Biol. 340 (5):1073-1093 (2004) ; Fellouse, Proc. Nat· Acad. Sci. USA 101(34):12467-12472 (2004);及 Lee 等人 J. Immunol. Methods 284(1-2):119-132(2004))及用 於產生人類抗體或來自具有編碼人類免疫球蛋白序列之人 142552.doc •31 - 201011047 類免疫球蛋白基因座或基因之部分或全部的動物之人類樣 抗體的技術(參見,例如W098/24893、WO/9634096、 WO/9633735及 WO/91 10741,Jakobovits #A,Proc.Natl. Acad. Sci. USA, 90:2551 (1993) ; Jakobovits等人,Nature, 362:255-258 (1993) ; Bruggemann等人,Year in Immuno., 7:33 (1993);美國專利第 5,545,806號、第 5,569,825號、第 5,591,669 號(GenPharm 之所有)、第 5,545,807 號、WO 97/17852、美國專利第 5,545,807 號、第 5,545,806 號、第 5,569,825 號、第 5,625,126 號、第 5,633,425 號及第 5,661,016 號及 Marks 等人,Bio/Technology,10: 779-783 (1992) ; Lonberg 等人,Nature, 368:856-859 (1994);Antibodies and T-cell Hybridomas 563-681 (Elsevier, NY, 1981), recombinant DNA methods (see, e.g., U.S. Patent No. 4,816,567), bacteriophage presentation technology (see, for example, Clackson et al, Nature, 352: 624-628 (1991); Marks et al, J. Mol Biol, 222: 581-597 (1991); Sidhu et al, J. Mol. Biol. 338(2): 299-310 (2004); Lee Et al., J. Mol. Biol. 340 (5): 1073-1093 (2004); Fellouse, Proc. Nat. Acad. Sci. USA 101(34): 12467-12472 (2004); and Lee et al. Immunol. Methods 284(1-2): 119-132 (2004)) and for the production of human antibodies or from humans having human immunoglobulin sequences. 142552.doc • 31 - 201011047 Immunoglobulin loci or genes Techniques for human or antibody-like antibodies to some or all of the animals (see, for example, W098/24893, WO/9634096, WO/9633735, and WO/91 10741, Jakobovits #A, Proc. Natl. Acad. Sci. USA, 90:2551 ( 1993); Jakobovits et al, Nature, 362: 255-258 (1993); Bruggemann et al, Year in Immuno., 7:33 (1993); U.S. Patent Nos. 5,545,806, 5,569,825, 5,591, No. 669 (owned by GenPharm), No. 5,545,807, WO 97/17852, U.S. Patent Nos. 5,545,807, 5,545,806, 5,569,825, 5,625,126, 5,633,425 and 5,661,016, and Marks et al., Bio /Technology, 10: 779-783 (1992); Lonberg et al, Nature, 368: 856-859 (1994);
Morrison,Nature,368:812-813 (1994) ; Fishwild等人’Morrison, Nature, 368: 812-813 (1994); Fishwild et al.
Nature Biotechnology, 14:845-851 (1996) » Neuberger, NatureNature Biotechnology, 14:845-851 (1996) » Neuberger, Nature
Biotechnology, 14: 826 (1996);及 Lonberg及 Huszar,Intern.Biotechnology, 14: 826 (1996); and Lonberg and Huszar, Intern.
Rev. Immunol” 13:65-93 (1995)) o 「完整」抗體為包含抗原結合位點以及CL及至少重鏈恆 定域(CH1、CH2及CH3)之抗體。恆定域可為天然序列恆定 域(例如,人類天然序列恆定域)或其胺基酸序列變異體。 較佳地,完整抗體具有一或多種效應功能。 「抗體片段」包含完整抗體之一部分,較佳為完整抗體 之抗原結合區或可變區。抗體片段之實例包括Fab、Fab’、 F(ab')2及Fv片段;雙功能抗體;線性抗體(參見美國專利第 5,641,870 號,實例 2 ; Zapata等人,Protein Eng. 8(10): 105 7-1062 (1995));單鏈抗體分子;及由抗體片段形成之 142552.doc -32- 201011047 多重特異性抗體。 表述「線性抗體」通常係指Zapata等人,Protein Eng., 8(10):1057-1062 (1995)中所述之抗體。簡言之,該等抗體 包含一對串聯Fd區段(Vh-Ch1-Vh-Ch1),其與互補輕鏈多 肽一起形成一對抗原結合區。線性抗體可具雙特異性或單 特異性。 木瓜蛋白酶消化抗體產生兩個相同之抗原結合片段,稱 為「Fab」片段及殘餘「Fc」片段,此命名反映易於結晶 之能力。Fab片段由整個L鏈以及Η鏈之可變區域(vH)及-個重鏈之第一恆定域(CH1)組成。胃蛋白酶處理抗體產生 單一大的F(ab’)2片段,其粗略地對應於具有二價抗原結合 . 活性之經兩個雙硫鍵連接之Fab片段且仍能夠交聯抗原。 • Fab'片段與Fab片段之區別在於在CH1域之羧基末端具有額 外夕量殘基’包括來自抗體欽鍵區之一或多個半耽胺酸。 Fab’-SH在本文中為對於恆定域之半胱胺酸殘基帶有自由 硫醇基之Fab’的命名。F(ab')2抗體片段初始係產生為在片 段之間具有鉸鏈半胱胺酸之Fabi片段對。抗體片段之其他 化學偶合亦係已知的。Rev. Immunol 13:65-93 (1995)) o A "intact" antibody is an antibody comprising an antigen binding site and CL and at least a heavy chain constant domain (CH1, CH2 and CH3). The constant domain can be a native sequence constant domain (e.g., a human native sequence constant domain) or an amino acid sequence variant thereof. Preferably, the intact antibody has one or more effector functions. An "antibody fragment" comprises a portion of an intact antibody, preferably an antigen binding or variable region of an intact antibody. Examples of antibody fragments include Fab, Fab', F(ab')2 and Fv fragments; bifunctional antibodies; linear antibodies (see U.S. Patent No. 5,641,870, Example 2; Zapata et al, Protein Eng. 8(10): 105 7-1062 (1995)); single-chain antibody molecule; and 142552.doc-32-201011047 multispecific antibody formed from antibody fragment. The expression "linear antibody" generally refers to the antibody described in Zapata et al., Protein Eng., 8(10): 1057-1062 (1995). Briefly, the antibodies comprise a pair of tandem Fd segments (Vh-Ch1-Vh-Ch1) which together with the complementary light chain polypeptide form a pair of antigen binding regions. Linear antibodies can be bispecific or monospecific. Papain-digested antibodies produce two identical antigen-binding fragments, termed "Fab" fragments and residual "Fc" fragments, which reflect the ability to crystallize readily. The Fab fragment consists of the entire L chain as well as the variable region (vH) of the Η chain and the first constant domain (CH1) of the heavy chain. Pepsin treatment of the antibody produces a single large F(ab')2 fragment that roughly corresponds to the two disulfide-linked Fab fragments with bivalent antigen binding activity and is still capable of cross-linking the antigen. • The Fab' fragment differs from the Fab fragment by having an extravagant residue at the carboxy terminus of the CH1 domain' comprising one or more semi-proline from the antibody chimeric region. Fab'-SH is herein a nomenclature for Fab' with a free thiol group for a constant domain cysteine residue. The F(ab')2 antibody fragment was originally generated as a Fabi fragment pair with hinged cysteine between the fragments. Other chemical couplings of antibody fragments are also known.
Fc片段包含由雙硫鍵固持在一起之兩個η鏈的羧基末端 部分。抗體之效應功能係由以區中之序列來確定;該區亦 為由在特定類型細胞上所發現之Fc受體(FcR)所識別之部 分。The Fc fragment comprises a carboxy terminal portion of two η strands held together by a disulfide bond. The effector function of an antibody is determined by the sequence in the region; this region is also the portion recognized by the Fc receptor (FcR) found on a particular type of cell.
Fv」係由緊密非共價締合之一個重鏈可變區域與一個 輕鏈可變區域的二聚體組成。自該兩個域之摺疊發散出六 142552.doc •33· 201011047 個高變環(3個環各自來自η及L鏈),其有助於胺基酸殘基 之抗原結合且賦予抗體以抗原結合特異性。然而,即使單 一可變域(或僅包含三個對抗原具特異性之Cdr的Fv之一 半)具有識別及結合抗原之能力,但親和性常低於整個結 合位點。 亦縮寫為「sFv」或「scFv」之「單鏈Fv」為包含連接 成單一多肽鏈之VH及VL抗體域的抗體片段。較佳地,sFv 多肽另外包含位於VH與VL域之間使得sFv能夠形成用以抗 原結合之所要結構的多肽連接子。關於sFv之综述,參見Fv" consists of a dimer of a heavy chain variable region that is tightly non-covalently associated with a variable region of a light chain. From the folding of the two domains, six 142552.doc •33·201011047 hypervariable loops (three loops each from the η and L chains), which contribute to the antigen binding of the amino acid residues and confer antigen to the antibody Binding specificity. However, even if a single variable domain (or one half of an Fv comprising only three antigen-specific Cdrs) has the ability to recognize and bind antigen, the affinity is often lower than the entire binding site. A "single-chain Fv", also abbreviated as "sFv" or "scFv", is an antibody fragment comprising a VH and VL antibody domain linked into a single polypeptide chain. Preferably, the sFv polypeptide further comprises a polypeptide linker between the VH and VL domains such that the sFv is capable of forming the desired structure for antigen binding. For a review of sFv, see
Pluckthun於 The Pharmacology of Monoclonal Antibodies , 第 113 卷,R〇senburg 及 Moore 編,Springer-Verlag,New York ’ 第 269-315 頁(1994) ; Borrebaeck 1995 中。 術語「雙功能抗體」係指藉由建構sFv片段(參見前段)製 備之小抗體片段,其於VH及VL域之間具有短連接子(約5至 10個殘基)以使得達成V域之鏈間配對而非鏈内配對,產生 二價片段,亦即具有兩個抗原結合位點之片段。雙特異性 雙功能抗體為兩個「交叉」sFv片段之異源二聚體,其中 不同多肽鏈上存在兩種抗體之VH及VL域。雙功能抗體更全 面描述於(例如)EP 404,097、WO 93/11161 及 Hollinger 等 人,Proc. Natl. Acad. Sci. USA, 90:6444-6448 (1993)中。 非人類(例如,齧齒動物)抗體之「人類化」形式為含有 源自非人類抗體之最小序列的嵌合抗體。在極大程度上, 人類化抗體為其中受體高變區之殘基經具有所要抗體特異 性、親和性及能力之非人類物種(諸如小鼠,大鼠,兔或非 142552.doc -34- 201011047 人類靈長類動物)(供體抗體)的高變區之殘基置換之人類免 疫球蛋白(受體抗體)。在某些情況下,人類免疫球蛋白之 構架區(FR)殘基經相應非人類殘基置換。此外,人類化抗 體可包含在受體抗體或供體抗體中未發現之殘基。進行該 等修飾以進一步改進抗體效能。一般而言,人類化抗體將 包含大體上至少一個(且一般為兩個)可變域之全部,其中 所有或大體上所有之高變環對應於非人類免疫球蛋白之高 變環且所有或大體上所有之FR為人類免疫球蛋白序列之 ©® FR。人類化抗體視情況亦將包含免疫球蛋白恆定區(Fc)之 至少一部分,一般為人類免疫球蛋白之至少一部分。關於 進一步詳情,參見Jones等人,Nature 321:522-525 (1986); Riechmann等人,Nature 332:323-329 (1988) ; &Presta,Curr.Op· Struct. Biol. 2:593-596 (1992)。 如本文中所用,「密碼子組」係指一組用於編碼所要變 異體胺基酸之不同核苷酸三聯體序列。例如,可藉由固相 ^ 合成來合成一組寡核普酸,包括表示由密碼子組所提供之 核苷酸三聯體的所有可能組合且將編碼所要胺基酸群之序 列。密碼子命名之標準形式為IUB碼之標準形式,其在此 項技術中係已知的且描述於本文中。密碼子組一般由3個 大寫字母以斜體表示,例如NNK、NNS、XYZ、DVK及其 類似物(例如,NNK密碼子係指在密碼子之1及2位處, N=A/T/G/C且在等莫耳比下於3位處K=G/T以編碼所有20種 天然胺基酸)。因此,如本文中所用之「非隨機密碼子 組」係指編碼部分(較佳完全)滿足如本文所述之胺基酸選 142552.doc -35- 201011047 擇標準的所選胺基酸之密碼子組。於特定位置處具有所選 核苦酸「簡併」之寡核苷酸的合成於彼項技術中係熟知 的’例如TRIM 方法(Knappek等人,J. Mol. Biol· 296:57-86,1999) ; Garrard 及 Henner,Gene 128:103,1993。該等具 有特定密碼子組之募核苷酸組可使用市售核酸合成器(例 如’可購自 Applied Biosystems,Foster City,CA)來合成或 可由商業獲付(例如’獲自Life Technologies, Rockville, MD) °因此’所合成之具有特定密碼子組之一組募核苷酸 一般將包括複數個具有不同序列之寡核苷酸,該等差異係 由總序列内之密碼子組所建立。如根據本發明所用之寡核 苷酸具有允許與可變域核酸模板雜交之序列且亦可(但非 必須)包括適用於(例如)選殖目的之限制酶位點。 本發明之「結合」所關注抗原之抗體為以足夠親和性結 合抗原以使得抗體在靶向蛋白或表現抗原之細胞或組織時 適用作診斷劑及/或治療劑且不與其他蛋白顯著交叉反應Pluckthun in The Pharmacology of Monoclonal Antibodies, Vol. 113, ed. R〇senburg and Moore, Springer-Verlag, New York pp. 269-315 (1994); Borrebaeck 1995. The term "bifunctional antibody" refers to a small antibody fragment prepared by constructing an sFv fragment (see the previous paragraph) having a short linker (about 5 to 10 residues) between the VH and VL domains such that the V domain is achieved. Inter-strand pairing rather than intra-pair pairing produces a bivalent fragment, ie a fragment with two antigen binding sites. A bispecific bifunctional antibody is a heterodimer of two "crossover" sFv fragments in which the VH and VL domains of two antibodies are present on different polypeptide chains. Bifunctional antibodies are described more fully in, for example, EP 404,097, WO 93/11161 and Hollinger et al, Proc. Natl. Acad. Sci. USA, 90:6444-6448 (1993). A "humanized" form of a non-human (e.g., rodent) antibody is a chimeric antibody containing minimal sequence derived from a non-human antibody. To a large extent, humanized antibodies are non-human species (such as mouse, rat, rabbit or non-142552.doc-34-) in which the residues of the receptor hypervariable region have the desired antibody specificity, affinity and ability. 201011047 Human primate (receptor antibody) in which the residues of the hypervariable region of the human primate (donor antibody) are replaced. In some cases, the framework region (FR) residues of human immunoglobulin are replaced by corresponding non-human residues. Furthermore, humanized antibodies may comprise residues not found in the recipient antibody or in the donor antibody. These modifications are made to further improve antibody potency. In general, a humanized antibody will comprise substantially all of at least one (and generally two) variable domains, wherein all or substantially all of the hypervariable loops correspond to a hypervariable loop of a non-human immunoglobulin and all or In general, all FRs are ©® FR of human immunoglobulin sequences. The humanized antibody will also optionally comprise at least a portion of an immunoglobulin constant region (Fc), typically at least a portion of a human immunoglobulin. For further details, see Jones et al, Nature 321 :522-525 (1986); Riechmann et al, Nature 332:323-329 (1988); &Presta, Curr.Op· Struct. Biol. 2:593-596 (1992). As used herein, "codon set" refers to a set of different nucleotide triplet sequences encoding the desired amino acid. For example, a set of oligonucleotides can be synthesized by solid phase synthesis, including all possible combinations of nucleotide triplets provided by the codon set and which will encode the sequence of the desired amino acid group. The standard form of codon nomenclature is the standard form of the IUB code, which is known in the art and is described herein. The codon set is generally represented by italics in three uppercase letters, such as NNK, NNS, XYZ, DVK, and the like (eg, the NNK codon refers to the 1 and 2 positions of the codon, N=A/T/ G/C and K=G/T at the 3 position in the equimolar ratio to encode all 20 natural amino acids). Thus, as used herein, "non-random codon set" refers to a code that selects (preferably completely) a selected amino acid that meets the criteria for amino acid selection 142552.doc-35-201011047 as described herein. Subgroup. The synthesis of oligonucleotides having a degeneracy of the selected nucleotide acid at a particular position is well known in the art, such as the TRIM method (Knappek et al, J. Mol. Biol. 296: 57-86, 1999); Garrard and Henner, Gene 128: 103, 1993. Such sets of nucleotides with a particular codon set can be synthesized using commercially available nucleic acid synthesizers (eg, 'commercially available from Applied Biosystems, Foster City, CA) or commercially available (eg, 'obtained from Life Technologies, Rockville , MD) ° Therefore, a group of nucleotides having a particular codon set synthesized will generally comprise a plurality of oligonucleotides having different sequences, which are established by codon sets within the total sequence. Oligonucleotides as used in accordance with the invention have sequences which allow hybridization to a variable domain nucleic acid template and may, but need not, include restriction enzyme sites suitable for, for example, selection purposes. The antibody of the "antibody" of the antigen of interest of the present invention binds the antigen with sufficient affinity to make the antibody suitable as a diagnostic and/or therapeutic agent in the target protein or the cell or tissue expressing the antigen and does not significantly cross-react with other proteins.
之抗體。在該等實施例中,如由螢光活化細胞揀選(facs) 分析或放射免疫沈澱(RIA)4ELISA所測定,抗體與「非標 靶」蛋白結合之程度將小於抗體與其特定標靶蛋白結合之 約10/。。關於抗體與標靶分子之結合,術語「特異性結 合/或」特異性地結合至特定多狀或特定多狀標乾上之抗 原決定基」或「對特^多肽或特定多肽標起上之抗原決定 基具特異性」意謂經量測與非特異性相互作用不同之社人 =如,對於_·44或bH1_81而言,非特異性相互作用 ^至牛血清白蛋白、路蛋白、胎牛血清或中性鍵親和素 142552.doc -36 - 201011047 (neuravidin))。例如,特異性結合可藉由與對照分子之結 合相比測定分子之結合來置測。例如,特異性结人可夢由 與類似於標把之對照分子(例如’過量之未經標記標把)競 爭來測定特異性結合。在此情況下,若經標記標把與探針 之結合受到過量未經標記標靶之競爭性抑制,則指示特異 性結合。如本文所用之術語「特異性結合特定多肽或特定 多肽標乾上之抗原決定基」或「特異性地結合至特定多肽 或特疋多肽標把上之抗原決定基」或「對特定多肽或特定 乡肽標靶上之抗原決定基具特異性」可例如由對標靶具有 至少約200 nM、或者至少約150 nM、或者至少約1〇〇 nM、 或者至少約60 nM、或者至少約5〇 nM、或者至少約40 . nM、或者至少約30 nM、或者至少約2〇 nM、或者至少約 • nM、或者至少約8 nM、或者至少約6 nM、或者至少約 4 nM、或者至少約2 nM、或者至少約i nM或更大之尺4的 分子來展示。在f項實施例中,術語「特異性結合」係指 _ 分子在大體上不結合至任何其他多肽或多肽抗原決定基之 情況下結合至特定多肽或特定多肽上之抗原決定基的結 合。 「結合親和性」通常係指分子(例如抗體)之單一結合位 點與其結合搭配物(例如抗原)間之非共價相互作用的總強 度。除非另作說明,否則如本文所用之「結合親和性」係 指反映結合對成員(例如抗體與抗原)之間丨·丨相互作用之固 有尨σ親和性。分子X對其搭配物γ之親和性通常可由解 離常數(Kd)來表示。理想的是,Kd為約2〇〇 ηΜ、ι5〇 142552.doc .37- 201011047 nM、100 nM、60 nM、50 nM、40 nM、30 nM ' 20 nM、 10 nM、8 nM、6 nM、4 nM、2 nM、1 nM 或更強。親和性 可藉由此項技術中已知之常用方法(包括本文所述之彼等 方法)來量測。低親和性抗體通常緩慢地結合抗原且傾向 於易於解離,而高親和性抗體通常較快地結合抗原且傾向 於保持較長時間結合。此項技術中已知多種量測結合親和 性之方法,該等方法中之任一者均可用於達成本發明之目 的。 在一項實施例中,使用 BIAcore™-2000 iBIAcore™-3000(BIAcore, Inc·, Piscataway,NJ),藉由使用表面電衆共 振檢定,於25°C下以約l〇個反應單位(RU)之固定抗原CM5 晶片來量測根據本發明之「Kd」或「Kd值」。簡言之,根 據供應商之說明書用N-乙基-N’-(3-二曱胺基丙基)碳化二 亞胺鹽酸鹽(EDC)及N-羥基丁二醯亞胺(NHS)使羧曱基化 葡聚糖生物感應器晶片(CM5, BIAcore Inc.)活化。用10 mM乙酸鈉(pH4.8)稀釋抗原至5μg/ml(約0·2μM),之後以 5微升/分鐘之流動速率注射以獲得約10個反應單位(RU)之 偶合蛋白。注射抗原後,注射1 Μ乙醇胺以阻斷未反應之 基團。關於動力學量測,於25°C下以約25 μΐ/min之流動速 率於具有0.05% Tween 20之PBS(PBST)中注射Fab之兩倍連 續稀釋液(例如,0.78 nM至500 nM)。使用簡單之一比一 朗缪爾結合模型(Langmuir binding model)(BIAcore評估軟 體3.2版),藉由同時擬合締合與解離感應器圖譜來計算締 合速率(Ιη)及解離速率(kQff)。根據比率來計算平衡 142552.doc -38- 201011047 解離常數(Kd)。參見例如Chen,Y.等人,(1999) j. Biol· 293:865-881。若由上述表面電漿共振檢定獲得 合速率超過106 M·1 S·1,則可在如光譜儀(諸如裝備停Antibody. In such embodiments, the antibody binds to the "non-target" protein to a lesser extent than the antibody binds to its specific target protein as determined by fluorescence activated cell sorting (facs) analysis or radioimmunoprecipitation (RIA) 4 ELISA. About 10/. . With respect to the binding of an antibody to a target molecule, the term "specifically binds/or specifically binds to an epitope on a particular polymorphic or specific polymorphic stem" or "marks a specific polypeptide or a specific polypeptide" "Antigenic epitope specific" means a population that is different from the non-specific interaction = for example, for _44 or bH1_81, non-specific interactions to bovine serum albumin, road protein, fetal Bovine serum or neutral bond avidin 142552.doc -36 - 201011047 (neuravidin)). For example, specific binding can be detected by determining the binding of a molecule as compared to binding of a control molecule. For example, specific binding can be determined by competition with a control molecule similar to a standard (e.g., 'excess unlabeled handles') to determine specific binding. In this case, if the binding of the labeled label to the probe is competitively inhibited by excess unlabeled target, then the specific binding is indicated. The term "specifically binds to a specific polypeptide or an epitope on a particular polypeptide" or "specifically binds to an epitope on a particular polypeptide or a particular polypeptide" or "specific polypeptide or specificity" as used herein. The epitope specificity on the peptidomimetic target can be, for example, at least about 200 nM, or at least about 150 nM, or at least about 1 〇〇 nM, or at least about 60 nM, or at least about 5 Å from the target. nM, or at least about 40 nM, or at least about 30 nM, or at least about 2 nM, or at least about nM, or at least about 8 nM, or at least about 6 nM, or at least about 4 nM, or at least about 2 A molecule of nM, or at least about 4 μm or larger, is shown. In the embodiment of item f, the term "specifically binds" refers to a combination of a molecule that binds to a specific polypeptide or an epitope on a particular polypeptide without substantially binding to any other polypeptide or polypeptide epitope. "Binding affinity" generally refers to the total strength of non-covalent interactions between a single binding site of a molecule (e.g., an antibody) and its binding partner (e.g., an antigen). As used herein, "binding affinity" refers to the inherent 尨 σ affinity that reflects the 丨·丨 interaction between a member (e. g., an antibody and an antigen). The affinity of the molecule X for its conjugate γ is usually represented by the dissociation constant (Kd). Desirably, Kd is about 2〇〇ηΜ, ι5〇142552.doc .37- 201011047 nM, 100 nM, 60 nM, 50 nM, 40 nM, 30 nM '20 nM, 10 nM, 8 nM, 6 nM, 4 nM, 2 nM, 1 nM or stronger. Affinity can be measured by common methods known in the art, including those described herein. Low-affinity antibodies typically bind antigen slowly and tend to be readily dissociated, while high-affinity antibodies typically bind antigen faster and tend to remain bound for a longer period of time. A variety of methods for measuring binding affinity are known in the art, and any of these methods can be used to achieve the objectives of the present invention. In one embodiment, using BIAcoreTM-2000 iBIAcoreTM-3000 (BIAcore, Inc., Piscataway, NJ), by using a surface electrical resonance assay, at about 1 unit of reaction unit at 25 ° C (RU The fixed antigen CM5 wafer is used to measure the "Kd" or "Kd value" according to the present invention. Briefly, N-ethyl-N'-(3-diamidinopropyl)carbodiimide hydrochloride (EDC) and N-hydroxybutylimine (NHS) were used according to the supplier's instructions. The carboxymethylated dextran biosensor wafer (CM5, BIAcore Inc.) was activated. The antigen was diluted to 5 μg/ml (about 0.2 μM) with 10 mM sodium acetate (pH 4.8), followed by injection at a flow rate of 5 μL/min to obtain about 10 reaction units (RU) of the coupling protein. After the antigen was injected, 1 Μ ethanolamine was injected to block the unreacted group. For kinetic measurements, two-fold serial dilutions (e.g., 0.78 nM to 500 nM) of Fab were injected at 25 ° C at a flow rate of about 25 μΐ/min in PBS with 0.05% Tween 20 (PBST). The association rate (Ιη) and the dissociation rate (kQff) were calculated by simultaneously fitting the association and dissociation sensor profiles by using one of the simpler Langmuir binding models (BIAcore evaluation software version 3.2). Calculate the balance based on the ratio 142552.doc -38- 201011047 Dissociation constant (Kd). See, for example, Chen, Y. et al., (1999) j. Biol. 293:865-881. If the combined rate of the above surface plasma resonance is more than 106 M·1 S·1, it can be stopped in a spectrometer (such as equipment).
置之分光光度計(Aviv Instruments)或具有授拌紅色光 之 8000 系列 SLM-Aminco 分光光度計(ThermoSpectr〇nie))~ 量測濃度遞增之抗原存在下,藉由使用於25°C下量滴j PBS(pH 7.2)中之20 nM抗抗原抗體(Fab形式)之螢光發射強 度之增加或降低(激發=295 nm ;發射=340 nm ’ 16 nm帶 通)的螢光淬滅技術來測定締合速率。 根據本發明,「締合速率」或「kcn」亦可在25°C下,使 用 BIAcoreTM-2000 或 BIAcoreTM-3000(BIAcore, Inc., Piscataway,NJ),以約10個反應單位(RU)之固定抗原CM5 晶片,利用上述相同之表面電漿共振技術來測定。簡言 之,根據供應商之說明書用N-乙基-N’-(3-二曱胺基丙基) 碳化二亞胺鹽酸鹽(EDC)及N-羥基丁二醯亞胺(NHS)使羧 甲基化葡聚糖生物感應器晶片(CM5,BIAcore Inc.)活化。 用10mM乙酸納(pH4.8)稀釋抗原至5μg/ml(約0.2μM),之 後以5微升/分鐘之流動速率注射以獲得約1〇個反應單位 (RU)之偶合蛋白。注射抗原後,注射1 Μ乙醇胺以阻斷未 反應之基團。關於動力學量測,於25°C下以約25 μΐ/min之 流動速率於具有0.05% Tween 2〇之PBS(PBST)中注射Fab之 兩倍連續稀釋液(例如’ 〇·78 nM至500 nM)。使用簡單之 一對一朗繆爾結合模型(BIAcore評估軟體3·2版),藉由同 時擬合締合與解離感應器圖譜來計算缔合速率及解離 142552.doc -39- 201011047 速率(kQff)。根據比率kcff/kon來計算平衡解離常數(Kd)。參 見例如 Chen,Y.等人,(1999) J. Mol. Biol. 293:865-881。 然而’若由上述表面電漿共振檢定獲得之締合速率超過 106 Μ 1 S 1 ’則較佳可在如光譜儀(諸如裝備停流裝置之分 光光度計(Aviv Instruments)或具有攪拌光析管之8000系列 SLM-Aminco分光光度計(ThermoSpectr〇nic))所量測濃度遞 增之抗原存在下’藉由使用於25°C下量測PBS(pH 7.2)中之 20 nM抗抗原抗體(Fab形式)之螢光發射強度之增加或降低 (激發=295 nm ;發射=34〇 nm,16 nm帶通)的螢光淬滅技❿❹ 術來測定締合速率。 關於本發明之多肽而言之「生物活性」及「生物特徵」 意謂除另外說明外具有結合至生物分子之能力。 「生物分子」係指核酸、蛋白、碳水化合物、脂質及其 組合。在一項實施例中,生物分子天然存在。 「經分離」當用於描述本文所揭示之各種抗體時意謂已 、-呈識別且自表現其之細胞或細胞培養物分離及/或回收之 抗體。對於多肽而言,其天然環境之污染組分為一般將干_ 擾診斷或治療用途之物質,且可包括酶、激素及其他蛋白 質或非蛋白f溶質。在較佳實施例中,抗艘將經純化至⑴ 足以藉由使用旋轉杯定序儀來獲得N末端或内部胺基酸序 ^的至夕15個殘基之程度;或(2)使用庫馬斯(c〇〇massie) _s、(較佳地)銀染色在非還原或還原條件下藉由SDS_ PAGE獲得同源性。由於多肽天然環境之至少一種組分將 子在因此經分離之抗體包括重組細胞内之原位抗體。 142552.doc -40· 201011047 然而,通常經分離之多肽將由至少一個純化步驟來製備。 術语「對照序列」係指為特定宿主生物體内之可操作地 連接編碼序列之表現所必需的DNA序列。適於原核生物之 對,¾序列(例如)包括啟動子、視情況存在之操縱序列及核 糖體結合位點。已知真核細胞利用啟動子、聚腺苷酸化信 號及增強子。 當使核酸與另一核酸序列功能相關時,該核酸被「可操 作也連接」舉例而吕,前序列(presequence)或分泌性前 導序列之DNA若其被表現為參與多肽之分泌的前體蛋白質 則被可操作地連接於該多肽2DNA ;啟動子或增強子若其 影響編碼序列之轉錄則被可操作地連接於該編碼序列;或 . 核糖體結合位點若其經定位而有助於轉譯則被可操作地連 • 接於編碼序列。一般而言,「可操作地連接」意謂所連接 之DNA序列為鄰接的,且在分泌性前導序列之情況下為鄰 接的且處於閱讀階段。然而,增強子不必為鄰接的。藉由 接合於適宜限制性位點處來實現連接。若該等位點不存 在,則根據習知作法使用合成寡核苷酸接頭或連接子。 關於本文中所識別之多肽序列的「胺基酸序列一致性百 为數(/〇)」經疋義為在比對序列且引入缺口(若必要)以達成 最大序列一致性百分數之後,且不將任何保守性取代視為 序列一致性之部分時,胺基酸殘基在與所比較序列中之胺 基酸殘基相同之候選序列中的百分數。為測定胺基酸序列 一致性百分比目的而進行之比對可以此項技術中熟知之各 種方式來實現’例如使用公開可用之電腦軟體,諸如 142552.doc -41 - 201011047 BLAST、BLAST-2、ALIGN 或 Megalign(DNASTAR)軟體。 熟習此項技術者可確定用於量測比對之適當參數,包括實 現所比較之全長序列上最大比對所需之任何演算法。然 而,為達成本文之目的,胺基酸序列一致性%值係使用序 列比較電腦程式ALIGN-2而產生。ALIGN-2序列比較電腦 程式係由Genentech,Inc.創作且原始碼已以使用者文件備 案於美國版權辦公室(U.S. Copyright Office,Washington D.C.,20559),其中其係以美國版權註冊第TXU5 10087號 註冊。ALIGN-2 程式經 Genentech,Inc.(South SanA spectrophotometer (Aviv Instruments or 8000 series SLM-Aminco spectrophotometer (ThermoSpectr〇nie) with red light) ~ measured in the presence of increasing concentrations of antigen, used at 25 ° C Determination of the increase or decrease in the fluorescence emission intensity of 20 nM anti-antigen antibody (Fab form) in PBS (pH 7.2) by fluorescence quenching technique (excitation = 295 nm; emission = 340 nm '16 nm band pass) Association rate. According to the invention, the "association rate" or "kcn" can also be used at 25 ° C using BIAcoreTM-2000 or BIAcoreTM-3000 (BIAcore, Inc., Piscataway, NJ) in about 10 reaction units (RU). The immobilized antigen CM5 wafer was measured using the same surface plasma resonance technique described above. Briefly, N-ethyl-N'-(3-diamidinopropyl)carbodiimide hydrochloride (EDC) and N-hydroxybutylimine (NHS) were used according to the supplier's instructions. The carboxymethylated dextran biosensor wafer (CM5, BIAcore Inc.) was activated. The antigen was diluted to 5 μg/ml (about 0.2 μM) with 10 mM sodium acetate (pH 4.8), and then injected at a flow rate of 5 μl/min to obtain about 1 unit of reaction unit (RU) of the coupled protein. After the antigen was injected, 1 Μ ethanolamine was injected to block the unreacted group. For kinetic measurements, two-fold serial dilutions of Fab (eg ''·78 nM to 500) were injected at 25 ° C at a flow rate of approximately 25 μΐ/min in PBS (PBST) with 0.05% Tween 2〇. nM). Calculate the association rate and dissociation by using a simple one-to-one Langmuir binding model (BIAcore evaluation software version 3.2) by simultaneously fitting the association and dissociation sensor maps. 142552.doc -39- 201011047 Rate (kQff) . The equilibrium dissociation constant (Kd) was calculated from the ratio kcff/kon. See, for example, Chen, Y. et al., (1999) J. Mol. Biol. 293:865-881. However, 'if the association rate obtained by the above surface plasma resonance test exceeds 106 Μ 1 S 1 ', it may preferably be in a spectrometer such as a spectrophotometer equipped with a flow stop device (Aviv Instruments) or with a stirring phototube. 8000 Series SLM-Aminco Spectrophotometer (ThermoSpectr〇nic)) measured in the presence of increasing concentrations of antigens by measuring 20 nM anti-antibody (Fab format) in PBS (pH 7.2) at 25 °C Fluorescence quenching techniques for increasing or decreasing the intensity of the fluorescence emission (excitation = 295 nm; emission = 34 〇 nm, 16 nm bandpass) were used to determine the association rate. "Biological activity" and "biological characteristics" with respect to the polypeptide of the present invention means the ability to bind to a biomolecule unless otherwise stated. "Biomolecule" means a nucleic acid, a protein, a carbohydrate, a lipid, and combinations thereof. In one embodiment, the biomolecule is naturally occurring. "Isolated" when used to describe the various antibodies disclosed herein, means an antibody that has been identified and isolated and/or recovered from the cell or cell culture in which it is expressed. For polypeptides, the contaminating component of the natural environment is a substance that will generally be used for diagnostic or therapeutic purposes, and may include enzymes, hormones, and other proteinaceous or non-protein f solutes. In a preferred embodiment, the anti-boat will be purified to (1) to a degree sufficient to obtain an N-terminal or internal amino acid sequence of 15 residues by using a rotary cup sequencer; or (2) using a library Mussing is preferably obtained by SDS_PAGE under non-reducing or reducing conditions. Since at least one component of the polypeptide's natural environment, the antibody thus isolated includes an antibody in situ within the recombinant cell. 142552.doc -40· 201011047 However, typically the isolated polypeptide will be prepared by at least one purification step. The term "control sequence" refers to a DNA sequence necessary for the expression of a coding sequence operably linked within a particular host organism. Suitable for prokaryotic organisms, the 3⁄4 sequence includes, for example, a promoter, a manipulation sequence as appropriate, and a ribosome binding site. Eukaryotic cells are known to utilize promoters, polyadenylation signals, and enhancers. When a nucleic acid is functionally related to another nucleic acid sequence, the nucleic acid is "operably linked" as an example, and the DNA of the presequence or secretory leader sequence is expressed as a precursor protein involved in the secretion of the polypeptide. Is operably linked to the polypeptide 2 DNA; the promoter or enhancer is operably linked to the coding sequence if it affects the transcription of the coding sequence; or the ribosome binding site is mapped to facilitate translation It is operatively connected to the coding sequence. Generally, "operably linked" means that the DNA sequences being ligated are contiguous and, in the case of a secretory leader sequence, contiguous and in the reading phase. However, enhancers do not have to be contiguous. The ligation is achieved by conjugation to a suitable restriction site. If the isotopes are not present, synthetic oligonucleotide linkers or linkers are used according to conventional practice. The "amino acid sequence identity number (/〇)" for the polypeptide sequence identified herein is defined as the alignment sequence and the introduction of a gap (if necessary) to achieve the maximum sequence identity percentage, and not When any conservative substitution is considered to be part of sequence identity, the percentage of amino acid residues in the same candidate sequence as the amino acid residue in the sequence being compared. Alignment for the purpose of determining percent identity of amino acid sequences can be accomplished in a variety of ways well known in the art, for example, using publicly available computer software such as 142552.doc -41 - 201011047 BLAST, BLAST-2, ALIGN Or Megalign (DNASTAR) software. Those skilled in the art can determine appropriate parameters for the measurement alignment, including any algorithms needed to achieve maximum alignment over the full length sequence being compared. However, for the purposes of this document, the amino acid sequence identity % value is generated using a sequence comparing the computer program ALIGN-2. The ALIGN-2 sequence comparison computer program was created by Genentech, Inc. and the source code has been filed with the user's file at the US Copyright Office (US Copyright Office, Washington DC, 20559), which is registered under US Copyright Registration No. TXU5 10087. . ALIGN-2 program by Genentech, Inc. (South San
Francisco,California)公開可用。ALIGN-2程式應經編譯以 用於UNIX操作系統,較佳為數位UNIX V4.0D。所有序列 比較參數均由ALIGN-2程式來設定且不改變。 除非另外指出,否則本文所述之胺基酸序列為鄰近之胺 基酸序列。 根據本發明,「結構上不相似」之生物分子係指不屬於 相同類別之生物分子(蛋白、核酸、脂質、碳水化合物 等),或例如當提及蛋白時,與彼此相比具有小於60%之胺 基酸一致性、小於50%之胺基酸一致性、小於4〇%之胺基 酸一致性、小於30%之胺基酸一致性、小於20%之胺基酸 一致性或小於10%之胺基酸一致性。 一般熟習此項技術者可易於測定雜交反應之「嚴格性」 且其通常為根據探針長度、洗滌溫度及鹽濃度之經驗計算 值。一般而言,較長探針要求較高溫度以適當黏接,而較 短探針需要較低溫度。雜交通常視當互補鏈存在於低於其 142552.doc -42- 201011047 熔融溫度之環境中時已變性DNA再黏接之能力而定。探針 與可雜交序列之間所要之同源性程度愈高,可使用之相對 溫度則愈1¾。因此’由此得出結論5較南相對溫度將傾向 於使反應條件更嚴格,而因此較低相對溫度則傾向於使反 應條件較不嚴格。關於雜交反應嚴格性之額外詳情及解 釋,參見 Ausubel 等人,Current Protocols in MolecularFrancisco, California) is publicly available. The ALIGN-2 program should be compiled for UNIX operating systems, preferably digital UNIX V4.0D. All sequence comparison parameters are set by the ALIGN-2 program and are unchanged. Unless otherwise indicated, the amino acid sequences described herein are adjacent amino acid sequences. According to the present invention, a "structurally dissimilar" biomolecule refers to a biomolecule (protein, nucleic acid, lipid, carbohydrate, etc.) that does not belong to the same class, or, for example, when referring to a protein, has less than 60% compared to each other. Amino acid identity, less than 50% amino acid identity, less than 4% amino acid identity, less than 30% amino acid identity, less than 20% amino acid identity or less than 10 % amino acid identity. Those skilled in the art can readily determine the "stringency" of the hybridization reaction and are typically empirically calculated based on probe length, wash temperature, and salt concentration. In general, longer probes require higher temperatures for proper bonding, while shorter probes require lower temperatures. Hybridization is generally determined by the ability of the denatured DNA to re-adhere when the complementary strand is present in an environment below its melting temperature of 142552.doc -42 - 201011047. The higher the degree of homology between the probe and the hybridizable sequence, the higher the relative temperature that can be used. Therefore, it is concluded that the relatively souther temperature will tend to make the reaction conditions more stringent, and therefore the lower relative temperature tends to make the reaction conditions less stringent. For additional details and explanations on the stringency of hybridization reactions, see Ausubel et al., Current Protocols in Molecular.
Biology, Wiley Interscience Publishers, (1995)。Biology, Wiley Interscience Publishers, (1995).
如本文所定義,「嚴格條件」或「高嚴格性條件」可由 以下要求來識別:(1)採用低離子強度及高溫以供洗滌,例 如0.015 Μ氣化鈉/0.0015 Μ檸檬酸鈉/0.1%十二烷基硫酸 鈉,於50°C下;(2)在雜交期間採用變性劑(諸如甲醯胺), 例如具有0.1%牛血清白蛋白/0.1% Ficoll/0.1%聚乙烯吡咯 啶酮之50%(v/v)曱醯胺/具有750 mM氣化鈉、75 mM擰檬 酸鈉之50 mM磷酸鈉緩衝液(pH 6.5),於42°C下;或(3)在 42°C 下,於採用 50% 甲醯胺、5xSSC(0.75 M NaCh 0.075 Μ檸檬酸鈉)、50 mM磷酸鈉(pH 6.8)、0.1%焦磷酸鈉、5χ 唐納氏溶液(Denhardt's solution)、經超音波處理之娃魚精 DNA(50 pg/ml)、0.1% SDS及10%硫酸葡聚糖之溶液中隔 夜雜交,在42°C下於〇.2xSSC(氣化鈉/檸檬酸鈉)中洗滌10 分鐘,繼而在55°C下於由含有EDTA之O.lxSSC組成之高嚴 格性洗滌液中洗滌1 0分鐘。 「適度嚴格條件」可如Sambrook等人,MolecularAs defined herein, "stringent conditions" or "high stringency conditions" can be identified by the following requirements: (1) low ionic strength and high temperature for washing, such as 0.015 bismuth sodium sulphate / 0.0015 Μ sodium citrate / 0.1% Sodium lauryl sulfate at 50 ° C; (2) a denaturing agent (such as formamide) during hybridization, for example with 0.1% bovine serum albumin / 0.1% Ficoll / 0.1% polyvinylpyrrolidone 50% (v/v) guanamine/50 mM sodium phosphate buffer (pH 6.5) with 750 mM sodium sulphate, 75 mM sodium citrate at 42 ° C; or (3) at 42 ° C Next, using 50% metformin, 5xSSC (0.75 M NaCh 0.075 Μ sodium citrate), 50 mM sodium phosphate (pH 6.8), 0.1% sodium pyrophosphate, 5 DDenhardt's solution, ultrasonic wave The solution was treated overnight in a solution of fish sperm DNA (50 pg/ml), 0.1% SDS and 10% dextran sulfate, and washed at 42 ° C in 〇.2xSSC (sodium gasification / sodium citrate) 10 Minutes were then washed for 10 minutes at 55 ° C in a high stringency wash consisting of O.lxSSC containing EDTA. "Moderately stringent conditions" can be found in Sambrook et al., Molecular
Cloning: A Laboratory Manual, New York:Cold Spring Harbor Press, 1989所述來識別,且包括使用與如上文所述 142552.doc -43- 201011047 者相比較不嚴格之洗滌溶液及雜交條件(例如,溫度、離 子強度及%SDS)。適度嚴格條件之實例為在37°C下於包含 以下各物之溶液中隔夜培育:20%曱醯胺、5xSSC(150 mM NaCl、15 mM檸檬酸三鈉)、50 mM磷酸鈉(pH 7.6),5x唐 納氏溶液、10%硫酸葡聚糖及20 mg/ml變性經剪切鮭魚精 DNA ;繼而在約37至50°C下於lxSSC中洗滌過濾器。熟習 此項技術者將識別如何視需要調整溫度、離子強度等以適 應諸如探針長度之因素及其類似因素。 抗體「效應功能」係指可歸因於抗體之Fc區(天然序列 Fc區或胺基酸序列變異體Fc區)之彼等生物活性,且隨抗 體同型而變化。抗體效應功能之實例包括:Clq結合及互 補依賴性細胞毒性;Fc受體結合;抗體依賴性細胞介導之 細胞毒性(ADCC);吞噬作用;細胞表面受體(例如B細胞 受體)之下調及B細胞活化。 「抗體依賴性細胞介導之細胞毒性」或「ADCC」係指 一種細胞毒性形式,其中與存在於特定細胞毒性細胞(例 如天然殺傷(NK)細胞、嗜中性白血球及巨噬細胞)上之Fc 受體(FcR)結合的分泌型Ig使得該等細胞毒性效應細胞能夠 與帶有抗原之標靶細胞特異性地結合且隨後以細胞毒素殺 傷標靶細胞。抗體「配備」細胞毒性細胞且完全為此殺傷 所需。用於介導ADCC之初級細胞(NK細胞)僅表現 FcyRIII,而單核細胞表現 FcyRI、FcyRII 及 FcyRIII。FcR 在造血細胞上之表現係總結於Ravetch及Kinet, Annu. Rev. Immunol 9:457-92 (1991)之第464頁上的表3中。為評估所 142552.doc • 44· 201011047 關注分子之ADCC活性,可進行活體外ADCC檢定,諸如 美國專利第5,500,362號或第5,821,337號中所述之檢定。用 於該等檢定之有用效應細胞包括周邊血液單核細胞 (PBMC)及自然殺傷(NK)細胞。其他或另外,所關注分子 之ADCC活性可於活體内評估,例如在如Clynes等人(Proc. Natl. Acad. Sci. USA)95:652-656 (1998)中所揭示之動物模 型中評估。 「Fc受體」或「FcR」描述與抗體之Fc區結合之受體。 較佳FcR為天然序列人類FcR。此外,較佳FcR為結合IgG 抗體之FcR(y受體)且包括FcyRI、FcyRII及FcyRIII子類之 受體,包括該等受體之對偶基因變異體及另外之剪接形 • 式。FcyRII受體包括FcyRIIA(「活化受體」)及 • FcYRIIB(「抑制受體」),其具有主要其細胞質域不同之類 似胺基酸序列。活化受體FcyRIIA在其細胞質域中含有基 於免疫受體酪胺酸之活化基元(ITAM)。抑制受體FcyRIIB 在其細胞質域中含有基於免疫受體酪胺酸之抑制基元 (ITIM)(參見 M.於Damron, Annu. Rev. Immunol. 15:203-234 (1997)中之評述)。FcR 係評述於 Ravetch 及 Kinet, Annu. Rev. Immunol. 9:457-492 (1991) ; Capel等人,Immunomethods 4:25-34 (1994);及 de Haas 等人,J· Lab. Clin· Med. 126:330-41 (1995)中。本文之術語「FcR」涵蓋包括有待 於將來識別之其他FcR。該術語亦包括新生受體FcRn,其 負責將母系IgG轉移至胎兒(Guyer等人,J. Immunol. 117:587(1976)及 Kim等人,J. Immunol. 24:249 (1994))。 142552.doc -45- 201011047 「人類效應細胞」係表現一或多個FcR且執行效應功能 之白血球。該等細胞較佳至少表現FcyRIII且執行ADCC效 應功能。介導ADCC之人類白血球的實例包括周圍血液單 核細胞(PBMC)、自然殺傷(NK)細胞、單核細胞、細胞毒 性T細胞及嗜中性白血球;其中PBMC及NK細胞為較佳 的。效應細胞可自例如血液之天然來源分離。 「補體依賴性細胞毒性」或「CDC」係指標靶細胞在補 體存在下之溶解。藉由使補體系統之第一組分(Clq)結合 至與其同源抗原結合之抗體(屬於適當子類),引發典型補 體路徑之活化。為評估補艎活化,可執行(例如)如Cloning: A Laboratory Manual, New York: Cold Spring Harbor Press, 1989, for identification, and includes the use of washing solutions and hybridization conditions (eg, temperature) that are less stringent than those described above in 142552.doc -43-201011047. , ionic strength and %SDS). An example of moderately stringent conditions is overnight incubation at 37 ° C in a solution containing the following: 20% guanamine, 5 x SSC (150 mM NaCl, 15 mM trisodium citrate), 50 mM sodium phosphate (pH 7.6) , 5x Down's solution, 10% dextran sulfate, and 20 mg/ml denatured sheared salmon sperm DNA; then the filter was washed in lxSSC at about 37 to 50 °C. Those skilled in the art will recognize how to adjust temperature, ionic strength, etc. as needed to accommodate factors such as probe length and the like. Antibody "effector function" refers to the biological activity attributable to the Fc region of the antibody (the native sequence Fc region or the amino acid sequence variant Fc region) and which varies with the antibody isotype. Examples of antibody effector functions include: Clq binding and complementation-dependent cytotoxicity; Fc receptor binding; antibody-dependent cell-mediated cytotoxicity (ADCC); phagocytosis; downregulation of cell surface receptors (eg, B cell receptors) And B cell activation. "Antibody-dependent cell-mediated cytotoxicity" or "ADCC" refers to a cytotoxic form that is present on specific cytotoxic cells (eg, natural killer (NK) cells, neutrophils, and macrophages). The secreted Ig bound by the Fc receptor (FcR) enables the cytotoxic effector cells to specifically bind to the target cell bearing the antigen and subsequently kill the target cell with the cytotoxin. The antibody is "equipped" with cytotoxic cells and is completely required for killing. Primary cells (NK cells) used to mediate ADCC exhibit only FcyRIII, whereas monocytes exhibit FcyRI, FcyRII, and FcyRIII. The expression of FcR on hematopoietic cells is summarized in Table 3 on page 464 of Ravetch and Kinet, Annu. Rev. Immunol 9:457-92 (1991). For the evaluation of the ADCC activity of the 142552.doc • 44· 201011047 molecule, an in vitro ADCC assay can be performed, such as the assay described in U.S. Patent No. 5,500,362 or 5,821,337. Useful effector cells for such assays include peripheral blood mononuclear cells (PBMC) and natural killer (NK) cells. Alternatively or additionally, the ADCC activity of the molecule of interest can be assessed in vivo, e.g., in an animal model as disclosed in Clynes et al. (Proc. Natl. Acad. Sci. USA) 95:652-656 (1998). "Fc receptor" or "FcR" describes a receptor that binds to the Fc region of an antibody. Preferably, the FcR is a native sequence human FcR. Furthermore, preferred FcRs are FcRs (y receptors) that bind to IgG antibodies and include receptors for the FcyRI, FcyRII, and FcyRIII subclasses, including dual gene variants of these receptors, as well as alternative splicing forms. FcyRII receptors include FcyRIIA ("Activated Receptor") and • FcYRIIB ("Inhibitory Receptor"), which have similar amino acid sequences that differ primarily in their cytoplasmic domain. The activating receptor FcyRIIA contains an immunoreceptor tyrosine-based activation motif (ITAM) in its cytoplasmic domain. The inhibitory receptor FcyRIIB contains an immunoreceptor tyrosine-based inhibitory element (ITIM) in its cytoplasmic domain (see M. Review in Damron, Annu. Rev. Immunol. 15:203-234 (1997)). The FcR line is reviewed in Ravetch and Kinet, Annu. Rev. Immunol. 9:457-492 (1991); Capel et al, Immunomethods 4:25-34 (1994); and de Haas et al, J. Lab. Clin· Med 126:330-41 (1995). The term "FcR" as used herein encompasses other FcRs that are to be identified in the future. The term also encompasses the nascent receptor FcRn, which is responsible for the transfer of maternal IgG to the fetus (Guyer et al, J. Immunol. 117:587 (1976) and Kim et al, J. Immunol. 24:249 (1994)). 142552.doc -45- 201011047 "Human effector cells" are white blood cells that exhibit one or more FcRs and perform effector functions. Preferably, the cells exhibit at least FcyRIII and perform an ADCC effect function. Examples of human leukocytes that mediate ADCC include peripheral blood mononuclear cells (PBMC), natural killer (NK) cells, monocytes, cytotoxic T cells, and neutrophils; PBMCs and NK cells are preferred. Effector cells can be isolated from natural sources such as blood. "Complement-dependent cytotoxicity" or "CDC" is a measure of the dissolution of target cells in the presence of complement. Activation of a typical complement pathway is initiated by binding the first component of the complement system (Clq) to an antibody that binds to its cognate antigen (subject to a suitable subclass). To evaluate the activation of the sputum, you can perform (for example)
Gazzano-Santoro等人,J. Immunol. Methods, 202:163(1996) 中所述之CDC檢定。 術語「治療有效量」係指治療個體疾病或病症之抗體或 抗體片段的量。在腫瘤(例如癌性腫瘤)之情況下’抗體或 抗體片段(例如’特異性地結合HER2及VEGF之多重特異 性抗體或抗體片段)之治療有效量可減少癌細胞數目;降 低原發腫瘤尺寸;抑制(亦即在某種程度上減緩且較佳終 止)癌細胞浸潤至周邊器官中;抑制(亦即在某種程度上減 緩且較佳終止)腫瘤轉移;在某種程度上抑制腫瘤生長; 及/或在某種程度上減輕與病症相關聯之一或多種症狀。CDC assay as described in Gazzano-Santoro et al, J. Immunol. Methods, 202: 163 (1996). The term "therapeutically effective amount" refers to an amount of an antibody or antibody fragment that treats a disease or condition in an individual. In the case of a tumor (eg, a cancerous tumor), a therapeutically effective amount of an antibody or antibody fragment (eg, a multiplex-specific antibody or antibody fragment that specifically binds to HER2 and VEGF) can reduce the number of cancer cells; reduce the size of the primary tumor Inhibiting (ie, to some extent slowing down and preferably terminating) cancer cells infiltrating into peripheral organs; inhibiting (ie, slowing down and better terminating) tumor metastasis; inhibiting tumor growth to some extent And/or to some extent alleviate one or more symptoms associated with the condition.
(TTP)、反應速率(RR)、 性及/或細胞毒性。關於癌症治 存活持續時間、疾病進展時間 反應持續時間及/或生活品質來量 142552.doc 201011047 測活體内功效。 「減少或抑制」意謂引起較佳20%或更大,更佳5〇%或 更大且最佳75%、85%、9G%、95%或更大之總體減少的能 減:>'或抑制可係指所治療病症之症狀 '癌轉移之存在 或尺寸、原發腫瘤之尺寸或血管生成病症中血管之尺寸或 數目。 術語「癌症」及「癌性」係指或描述哺乳動物中一般以 不受調節之細胞生長/增殖為特徵之生理學病況。此定義 包括良性及惡性癌症4症之實例包括(但不限於)癌瘤、 淋巴瘤、母細胞瘤、肉瘤及白血病。該等癌症之更特定實 例包括鱗狀細胞癌、小細胞肺癌、非小細胞肺癌、肺之腺 . '癌、肺之鱗狀癌、腹膜癌、肝細胞癌、包括胃腸癌之胃 癌、胰腺癌、神經膠母細胞瘤、神經膠質瘤、子宮頸癌、 印巢癌、肝癌、膀胱癌、肝癌、乳癌、結腸癌、結腸直腸 癌、子宮内膜癌或子宮癌、唾液腺癌、腎癌(例如腎細胞 _ 癌)、肝癌、前列腺癌、陰門癌、曱狀腺癌、肝癌、肛門 癌陰莖癌、黑素瘤及各種類型之頭頸部癌。 早期癌症」意謂非侵襲性或轉移性或分類為〇、〗或π 期癌症之癌症。 術°口癌别」係指一般在癌症之前或發展成癌症之病況 或生長。 非轉移性」意謂癌症為良性的或保留在原發位點處且 並未渗透至淋巴或血管系統中或除原發位點以外之組織 中。非轉移性癌症通常為任何癌症,其為〇、1或11期癌症 142552.doc •47· 201011047 且有時為III期癌症。 「涉及職2之異常活化的非惡性疾病或病症」為不包 含在患有或預先傾向於患疾病或病症之個體的細胞或組織 中發生HER2之異常活化的癌症之病況。該等疾病或病症 之實例包括自體免疫疾病(例如牛皮癬),參見下文之定 義;子宮内膜異位;硬皮病;再狹窄;息肉,諸如結腸2 肉、鼻息肉或胃腸息肉;纖維腺瘤;呼吸道疾病(例如慢 性支氣管炎 '哮喘(包括急性哮喘及過敏性哮喘)、囊腫性 纖維化、支氣管擴張、過敏性或其他鼻炎或竇炎、αι抗 胰蛋白酶缺陷、《、肺氣腫、肺纖維化或氣管過度^ 應、慢性阻塞性肺病及慢性阻塞性肺病);膽囊炎;=發 性神經纖維瘤;多囊性腎病;m病;皮膚病症包括 牛皮癬及皮炎;血管疾病;涉及血管上皮細胞之異常增殖 的病況;胃腸潰癌;Menetrier氏疾病、分泌腺瘤或蛋白流 失症候群;腎病;也管生成病症;眼科疾病諸如年齡相 關之黃斑退化、假定眼科組織製菌病症候群、源自增殖性 糖尿病性視網膜病之視網膜新生血管、視網膜血管生成、 糖尿病性視網膜病或年齡相關之黃斑退化;骨相關病變, 諸如骨關節炎、佝僂病及骨質疏鬆症;大腦缺血事件後之 損害;纖維變性或水腫疾病,諸如肝硬化症、肺纖維化、 類肉瘤病、甲狀腺炎、全身性黏性過大症候群、Osh Weber-Rendu病、慢性阻塞性肺病或燒傷、外傷、輻射、 撞擊、低氧或缺血後之水腫;皮膚之過敏性反應;糖尿病 性視網膜病及糖尿病性腎病變;格林巴厘氏症候群 142552.doc -48- 201011047 (Guillain-Barre syndrome);移植物抗宿主疾病或移植排斥 反應;佩吉特氏病(Paget’s disease);骨或關節炎症;光老 化(例如由UV輻射人類皮膚而引起);良性前列腺肥大;特 疋微生物感染’包括選自膝病毒、汗塔病毒(hantavirus)、 伯氏疏螺旋菌(Borrelia burgdorferi)、耶爾森菌屬(Yersinia spp.)及百日咳桿菌(B〇rdetella pertussis)之微生物病原體; 血小板凝集引起之血栓;生殖病況,諸如子宮内膜異位、 卵巢過度刺激症候群、初期子巔、功能障礙性子宮出金或 ··月經過多,滑膜炎;動脈粥樣化變;急性及慢性腎病變 (包括增殖性絲球體腎炎及糖尿病誘發之腎疾病);濕疹; 肥厚性疤痕形成,内毒素休克及真菌感染;家族性腺瘤病 . 息肉病;神經退化性疾病(例如阿茲海默氏病(Alzheimer,s • disease)、AIDS相關之癡呆、帕金森氏病(Parkinson,s disease)肌肉萎縮性側索硬化、色素性視網膜炎、脊趙 性肌肉萎縮及小腦退化);骨髓發育不良症候群;再生障 •礙性貧血;缺血損傷;_、腎或肝之纖維化;了細胞介導 之過敏性疾病;嬰兒肥厚性幽門狹窄;泌尿系統阻塞性症 候群;牛皮癖性‘關節炎及橋本氏甲狀腺炎(Hasim〇t〇,s thyroiditis)。 在本文中’自體免疫疾病」為由個體自身組織產生及 針對個體自身組織之疾病或病症,或其共分離㈣ segregate)或表現症狀或由此產生之病狀。自體免疫疾病 或病症之實例包括(但不限於)關節炎(類風濕性關節炎,讀 如急性關節炎、慢性類風濕性關節炎、痛風性關節炎、, 142552.doc -49- 201011047 性痛風性關節炎、慢性炎性關節《、退化性關節炎、感染 性關節炎、萊姆關節炎(Lyme arthritis)、增殖性關節炎 :皮癖性,節炎、椎骨關節炎及青少年型類風濕性關節 人月關即炎、慢性漸進性關節炎、畸形性關節炎、慢性 原發性多關節炎、反應性關節炎及強直性脊椎炎)、炎性 過度增殖性皮膚病、牛皮癬(諸如斑塊狀牛皮癬、點狀牛 皮癬、膿皰性牛皮癖及指甲之牛皮癬)、皮炎(包括接觸性 皮炎、慢性接觸性皮炎、過敏性皮炎、過敏性接觸性皮 炎、疱疹樣皮炎及異位性皮炎)、x性聯高IgM症候群 lmked hyper igM syndr〇me)、蓴痲疹(諸如慢性過敏性蓴痲 疹及慢性特發性蓴痲疹,包括慢性自體免疫性蓴痲疹)、 多肌炎/皮肌炎、青少年皮肌炎、中毒性表皮壞死松解 症、硬皮病(包括全身性硬皮病)、硬化症(諸如全身性硬化 症、多發性硬化症(MS),諸如視神經脊髓炎型MS(spino- optical MS)、原發性進行性ms(PPMS)及復發緩解型 MS(RRMS)、進行性全身性硬化症、動脈粥樣硬化、動脈 硬化、播散性硬化症及共濟失調性硬化症)、炎性腸道疾 病(IBD)(例如’克羅恩氏病(cr〇hn's disease)、自體免疫介 導性腸胃疾病、結腸炎(諸如潰瘍性結腸炎(ulcerative colitis)、潰瘍性結腸炎(e〇litis ulcerosa)、顯微鏡下結腸 炎、膠原性結腸炎、息肉狀結腸炎、壞死性小腸結腸炎及 透壁性結腸炎)及自體免疫炎性腸道疾病)、壞疽性膿皮 病、結節性紅斑、原發性硬化性膽管炎、上鞏膜炎)、呼 吸窘迫症候群(包括成人或急性呼吸窘迫症候群(ARDS))、 142552.doc -50- 201011047 腦脊膜炎、葡萄膜之全部或部分之炎症、虹膜炎、脈絡膜 炎、自體免疫血液病、類風濕性脊椎炎、突發性聽力喪 失、IgE介導性疾病(諸如重度過敏及過敏性與異位性鼻 炎)、腦炎(諸如拉斯馬森腦炎(Rasmussen,s encephaliUs)及 邊緣葉腦炎及/或腦幹腦炎、葡萄膜炎(諸如前葡萄膜炎、 急性前葡萄膜炎、肉芽腫性葡萄膜炎、非肉芽腫性葡萄膜 炎、晶狀體抗原性葡萄膜炎、後葡萄膜炎或自體免疫葡萄 ▲赢膜炎)、伴有及不伴有腎病症候群之絲球體腎炎(GN)(諸如 _慢性或急性絲球體腎炎,諸如原發性GN、免疫介導性 GN、膜性GN(膜性腎病變)、特發性膜性GN或特發性膜性 腎病變、膜增殖性GN或膜性增殖性GN(MPGN)(包括I型及 ' Π型)及快速進行性GN)、過敏性病況、過敏性反應、濕疹 • (包括過敏性或異位性濕疹)、哮喘(諸如支氣管哮喘 (asthma bronchiale)、支氣管哮喘(br〇nchiai asthma)及自體 免疫哮喘)、涉及T細胞浸潤之病狀及慢性炎性反應、慢性 肺部炎性疾病、自體免疫心肌炎、白血球黏附缺陷病、全 身性紅斑性狼瘡症(SLE)或全身性紅斑狼瘡(諸如皮膚性 SLE、亞急性皮膚性紅斑性狼瘡症、新生兒狼瘡症候群 (NLE)、播散性紅斑性狼瘡症、狼瘡症(包括腎炎、大腦 炎、兒童、非腎、腎外、盤狀、禿頭症)、青少年型(1型) 糖尿病(包括兒童胰島素依賴性糖尿病(IDDM)、成人型糖 尿病(II型糖尿病)、自體免疫糖尿病、特發性尿崩症、與 由細胞激素及T淋巴細胞介導之急性及遲發超敏反應相關 之免疫反應、結核病、肉狀瘤病、肉芽脸(包括淋巴瘤樣 142552.doc 51 201011047 肉芽腫 '韋格納肉芽腫(Wegener’s granulomatosis))、顆粒 性球缺乏症、血管炎(包括脈管炎(包括大血管脈管炎(包括 風濕性多肌痛及巨細胞(高安氏(Takayasu's))動脈炎)、中 等血管脈管炎(包括川崎氏病(Kawasaki's disease)及結節性 多動脈炎)、顯微鏡下多動脈炎、CNS脈管炎、壞死性脈管 炎、皮膚性脈管炎或超敏性脈管炎、全身性壞死性脈管炎 及ANCA相關脈管炎(諸如徹奇-斯全司(Churg-Strauss)脈管 炎或症候群(CSS)))、顳動脈炎、再生障礙性貧血、自體免 疫再生障礙性貧血、庫姆陽性貧企(Coombs positive ©❹ anemia)、戴-布二氏貧血(Diamond Blackfan anemia)、溶血 性貧血或免疫性溶血性貧血(包括自體免疫溶血性貧血 (AIHA)、惡性貧血、艾迪生氏病(Addison’s disease)、純紅 細胞貧血或發育不全(PRCA))、因子VIII缺乏症(Factor VIII deficiency)、A型jk友病、自體免疫嗜中性球減少 症、全血球減少症、白血球減少症、涉及白血球滲出之疾 病、CNS炎性病症、多器官損傷症候群(諸如繼發於敗血 症、外傷或出血之多發性器官損傷症候群)、抗原抗體複Θ 合介導性疾病、抗腎小球基底膜疾病、抗磷脂抗體症候 群、過敏性神經炎、貝西氏病(Bechet's或Behcet's disease)、 卡索曼氏症候群(Castleman's syndrome)、古德帕斯徹氏症 候群(Goodpasture’s syndrome)、雷諾氏症候群(Reynaud's syndrome)、休格連氏症候群(Sjogren's syndrome)、史蒂 芬-壤森症候群(Stevens-Johnson syndrome)、類天范瘡(諸 如大皰性類天疱瘡及皮膚類天疱瘡)、天疱瘡(包括尋常天 142552.doc -52- 201011047 疱瘡、落葉型天疱瘡、天疱瘡性黏膜性類天疱瘡及紅斑性 天疱瘡)、自體免疫性多内分泌病、萊特氏病或症候群 (Reiter’s disease or syndrome)、免疫複合物性腎炎、抗體 介導性腎炎、視神經脊髓炎、多發性神經病、慢性神經病 (諸如IgM多發性神經病或igM介導性神經病)、血小板減少 症(例如’由如心肌梗塞患者逐步顯現)(包括栓塞性血小板 減少性紫癜病(TTP)及自體免疫或免疫介導性血小板減少 症,諸如特發性血小板減少性紫癜病(ITp)(包括慢性或急 性ΙΤΡ))、睾丸及卵巢之自體免疫疾病(包括自體免疫睪丸 炎及卵巢炎)、原發性甲狀腺功能低下、副甲狀腺低能 症、自體免疫内分泌疾病(包括甲狀腺炎,諸如自體免疫 甲狀腺炎、橋本氏病(Hashimoto’s disease)、慢性甲狀腺炎 (橋本氏甲狀腺炎(Hashimoto,s thyr〇iditis))或亞急性甲狀腺 炎)、自體免疫甲狀腺疾病、特發性甲狀腺功能低下、格 雷氏病(Grave,s disease)、多腺性症候群(諸如自體免疫多 腺性症候群(或多腺性内分泌病症候群))、副腫瘤症候群 (包括神經性副腫瘤症候群,諸如蘭伯特_伊頓肌無力症候 群(Lambert-Eaton myasthenic syndr〇me)或伊頓蘭伯特症 候群(Ean>n-Lambert syndr〇me))、僵人症候群⑽ffman或 sUff-person syndr〇me)、腦脊髓炎(諸如過敏性腦脊趙炎及 實驗性過敏性嘴脊越炎_))、重症肌無力(諸如胸腺瘤 相關重症肌無力)、小腦變性、神經性肌強直、視性眼陣 擎或視性眼陣擎肌陣攀症候群(_)及感官神經病、多灶 性運動神經病、席漢氏症候群(SheeWs s灿。㈣、自體 142552.doc -53- 201011047 免疫肝炎、慢性肝炎、類狼瘡肝炎、巨細胞肝炎、慢性活 動性肝炎或自體免疫慢性活動性肝炎、淋巴細胞間質性肺 炎、阻塞性細支氣管炎(非移植)伴NSIP、古立安-白端症候(TTP), response rate (RR), sex and/or cytotoxicity. About cancer treatment Survival duration, time to disease progression Duration of response and/or quality of life 142552.doc 201011047 Test in vivo efficacy. "Reducing or suppressing" means reducing the overall reduction of the overall reduction of 20% or more, more preferably 5% or more, and optimally 75%, 85%, 9G%, 95% or more: > 'Or inhibition may refer to the presence or size of a cancer metastasis, the size of a primary tumor, or the size or number of blood vessels in an angiogenic condition. The terms "cancer" and "cancerous" refer to or describe a physiological condition in a mammal that is generally characterized by unregulated cell growth/proliferation. Examples of such definitions include benign and malignant cancers including, but not limited to, carcinomas, lymphomas, blastomas, sarcomas, and leukemias. More specific examples of such cancers include squamous cell carcinoma, small cell lung cancer, non-small cell lung cancer, lung glands. 'Cancer, squamous cell carcinoma of the lung, peritoneal cancer, hepatocellular carcinoma, gastric cancer including gastrointestinal cancer, pancreatic cancer , glioblastoma, glioma, cervical cancer, nest cancer, liver cancer, bladder cancer, liver cancer, breast cancer, colon cancer, colorectal cancer, endometrial cancer or uterine cancer, salivary gland cancer, kidney cancer (eg Renal cells _ cancer), liver cancer, prostate cancer, genital cancer, squamous adenocarcinoma, liver cancer, anal cancer penis cancer, melanoma and various types of head and neck cancer. "early cancer" means a cancer that is non-invasive or metastatic or classified as a sputum, 〗 〖 or π stage cancer. "Operational cancer" refers to a condition or growth that usually precedes cancer or develops into cancer. "Non-metastatic" means that the cancer is benign or remains at the primary site and does not penetrate into the lymphatic or vascular system or in tissues other than the primary site. Non-metastatic cancer is usually any cancer, which is sputum, stage 1 or 11 cancer 142552.doc •47· 201011047 and sometimes stage III cancer. "A non-malignant disease or condition involving abnormal activation of job 2" is a condition which does not include a cancer in which abnormal activation of HER2 occurs in cells or tissues of an individual having or predisposed to a disease or condition. Examples of such diseases or conditions include autoimmune diseases (e.g., psoriasis), see definitions below; endometriosis; scleroderma; restenosis; polyps, such as colon 2 meat, nasal polyps or gastrointestinal polyps; Tumor; respiratory disease (eg chronic bronchitis 'asthma (including acute asthma and allergic asthma), cystic fibrosis, bronchiectasis, allergic or other rhinitis or sinusitis, alpha 1 anti-trypsin deficiency, ", emphysema, Pulmonary fibrosis or tracheal hyperactivity, chronic obstructive pulmonary disease and chronic obstructive pulmonary disease); cholecystitis; = neurofibromatosis; polycystic kidney disease; m disease; skin disorders including psoriasis and dermatitis; vascular disease; Abnormal proliferation of epithelial cells; gastrointestinal cancer; Menetrier's disease, secreted adenoma or protein loss syndrome; nephropathy; also develops disorders; ophthalmic diseases such as age-related macular degeneration, hypothetical ophthalmic tissue bacteriostatic disorders, origin Retinal neovascularization, retinal angiogenesis, diabetic visual network Disease or age-related macular degeneration; bone-related lesions, such as osteoarthritis, rickets and osteoporosis; damage after cerebral ischemic events; fibrosis or edema disease, such as cirrhosis, pulmonary fibrosis, sarcoma, Thyroiditis, systemic hyperviscosity syndrome, Osh Weber-Rendu disease, chronic obstructive pulmonary disease or burns, trauma, radiation, impact, hypoxic or post-ischemic edema; skin allergic reaction; diabetic retinopathy and diabetes Kidney disease; Guillain-Barre syndrome 142552.doc -48- 201011047 (Guillain-Barre syndrome); graft versus host disease or transplant rejection; Paget's disease; bone or joint inflammation; photoaging ( For example, caused by UV radiation on human skin; benign prostatic hypertrophy; characteristic microbial infection 'includes selected from the group consisting of a knee virus, a hantavirus, a Borrelia burgdorferi, and a Yersinia spp. .) and microbial pathogens of B. rdetella pertussis; thrombus caused by platelet aggregation; reproductive conditions Such as endometriosis, ovarian hyperstimulation syndrome, early sputum, dysfunctional uterus withdrawal or menorrhagia, synovitis; atherectomy; acute and chronic nephropathy (including proliferative spheroids) Nephritis and diabetic-induced kidney disease; eczema; hypertrophic scar formation, endotoxin shock and fungal infection; familial adenoma; polyposis; neurodegenerative diseases (eg Alzheimer's disease (Alzheimer, s • disease) ), AIDS-related dementia, Parkinson's disease (sports atrophic lateral sclerosis, retinitis pigmentosa, vertebral muscle atrophy, and cerebellar degeneration); myelodysplastic syndrome; regenerative disorder • anemia Ischemic injury; _, renal or liver fibrosis; cell-mediated allergic disease; infant hypertrophic pyloric stenosis; urinary tract obstructive syndrome; psoriasis 'arthritis and Hashimoto's thyroiditis (Hasim〇t〇 , s thyroiditis). As used herein, an 'autoimmune disease' is a disease or condition produced by an individual's own tissue and directed against the individual's own tissue, or a co-segregation thereof, or a symptom or resulting condition. Examples of autoimmune diseases or conditions include, but are not limited to, arthritis (rheumatoid arthritis, reading such as acute arthritis, chronic rheumatoid arthritis, gouty arthritis, 142552.doc -49- 201011047 Gouty arthritis, chronic inflammatory joints, degenerative arthritis, infectious arthritis, Lyme arthritis, proliferative arthritis: skin spasm, arthritis, vertebral arthritis and juvenile rheumatoid Arthritis, inflammation, chronic progressive arthritis, malformation arthritis, chronic primary polyarthritis, reactive arthritis and ankylosing spondylitis), inflammatory hyperproliferative skin disease, psoriasis (such as plaque Psoriasis, psoriasis, pustular psoriasis and psoriasis of nails), dermatitis (including contact dermatitis, chronic contact dermatitis, atopic dermatitis, allergic contact dermatitis, herpes-like dermatitis and atopic dermatitis), X-linked high IgM syndrome lkmed hyper igM syndr〇me), urticaria (such as chronic allergic urticaria and chronic idiopathic urticaria, including chronic autoimmune urticaria) Polymyositis/dermatomyositis, adolescent dermatomyositis, toxic epidermal necrolysis, scleroderma (including systemic scleroderma), sclerosis (such as systemic sclerosis, multiple sclerosis (MS), Such as optic neuromyelitis MS (sino-optic MS), primary progressive ms (PPMS) and relapsing-remitting MS (RRMS), progressive systemic sclerosis, atherosclerosis, arteriosclerosis, disseminated sclerosis And ataxia sclerosis), inflammatory bowel disease (IBD) (eg 'cr〇hn's disease, autoimmune-mediated gastrointestinal disease, colitis (such as ulcerative colitis) (ulcerative colitis), ulcerative colitis (e〇litis ulcerosa), microscopic colitis, collagenous colitis, polyposis colitis, necrotizing enterocolitis and transmural colitis) and autoimmune inflammatory bowel Pathology), gangrenous pyoderma, nodular erythema, primary sclerosing cholangitis, upper scleritis, respiratory distress syndrome (including adult or acute respiratory distress syndrome (ARDS)), 142552.doc -50- 201011047 Meningitis, grapes Inflammation of all or part of the membrane, iritis, choroiditis, autoimmune blood disease, rheumatoid spondylitis, sudden hearing loss, IgE-mediated diseases (such as severe allergies and allergic and atopic rhinitis) , encephalitis (such as Rasmussen, s encephaliUs) and marginal encephalitis and / or brainstem encephalitis, uveitis (such as anterior uveitis, acute anterior uveitis, granulomatous grapes) Membrane inflammation, non-granulomatous uveitis, lens antigenic uveitis, posterior uveitis or autoimmune grapes ▲ eutrophic inflammation, glomerular nephritis (GN) with and without renal disease (such as _ Chronic or acute glomerulonephritis, such as primary GN, immune-mediated GN, membranous GN (membranous nephropathy), idiopathic membranous GN or idiopathic membranous nephropathy, membrane proliferative GN or Membranous proliferative GN (MPGN) (including type I and 'sputum type) and rapid progressive GN), allergic conditions, allergic reactions, eczema (including allergic or atopic eczema), asthma (such as Bronchial asthma (asthma bronchiale), bronchial asthma (br〇nchiai Asthma and autoimmune asthma), conditions involving T cell infiltration and chronic inflammatory reactions, chronic pulmonary inflammatory diseases, autoimmune myocarditis, leukocyte adhesion defects, systemic lupus erythematosus (SLE) or whole body Lupus erythematosus (such as cutaneous SLE, subacute cutaneous lupus erythematosus, neonatal lupus syndrome (NLE), disseminated lupus erythematosus, lupus (including nephritis, encephalitis, children, non-kidney, kidney) External, discoid, alopecia), adolescent (type 1) diabetes (including childhood insulin-dependent diabetes mellitus (IDDM), adult-type diabetes (type II diabetes), autoimmune diabetes, idiopathic diabetes insipidus, and Cytokine and T lymphocyte-mediated acute and delayed hypersensitivity-related immune responses, tuberculosis, sarcoidosis, granulosa (including lymphoma-like 142552.doc 51 201011047 granulomatosis 'Wegener's granulomatosis )), granular ball deficiency, vasculitis (including vasculitis (including major vascular vasculitis (including rheumatic polymyalgia and giant cells (Takayasu's )) arteritis), moderate vascular vasculitis (including Kawasaki's disease and nodular polyarteritis), microscopic polyarteritis, CNS vasculitis, necrotizing vasculitis, cutaneous vasculitis Or hypersensitivity vasculitis, systemic necrotizing vasculitis, and ANCA-associated vasculitis (such as Churg-Strauss vasculitis or syndrome (CSS)), temporal arteritis, regeneration Obstructive anemia, autoimmune aplastic anemia, Coombs positive ©❹ anemia, Diamond Blackfan anemia, hemolytic anemia, or immune hemolytic anemia (including autologous Immunohemolytic anemia (AIHA), pernicious anemia, Addison's disease, pure red blood cell anemia or hypoplasia (PRCA), Factor VIII deficiency, type A jk, autoimmune Neutrophce reduction, whole blood cell reduction, leukopenia, diseases involving leukocyte oozing, CNS inflammatory conditions, multiple organ injury syndrome (such as multiple organ damage secondary to sepsis, trauma or bleeding) Syndrome), antigen-antibody recombination-mediated disease, anti-glomerular basement membrane disease, antiphospholipid antibody syndrome, allergic neuritis, Bech's or Behcet's disease, Castleman's syndrome ), Goodpasture's syndrome, Reynaud's syndrome, Sjogren's syndrome, Stevens-Johnson syndrome, and so on (such as Bullous pemphigoid and pemphigoid), pemphigus (including common days 142552.doc -52- 201011047 acne, deciduous pemphigus, pemphigus pemphigoid and erythematous pemphigus), autologous Immune polyendocrine disease, Reiter's disease or syndrome, immune complex nephritis, antibody-mediated nephritis, optic neuromyelitis, polyneuropathy, chronic neuropathy (such as IgM polyneuropathy or igM-mediated Neuropathy), thrombocytopenia (eg 'progressively from patients with myocardial infarction) (including embolic) Small plate reduced purpura (TTP) and autoimmune or immune-mediated thrombocytopenia, such as idiopathic thrombocytopenic purpura (ITp) (including chronic or acute sputum), autoimmune testis and ovary Diseases (including autoimmune testicular and oophoritis), primary hypothyroidism, parathyroid hypoxia, autoimmune endocrine diseases (including thyroiditis, such as autoimmune thyroiditis, Hashimoto's disease, Chronic thyroiditis (Hashimoto, s thyr〇iditis) or subacute thyroiditis, autoimmune thyroid disease, idiopathic hypothyroidism, Grave's disease, polyglygonism Symptoms (such as autoimmune polyadenotrophic syndrome (or multi-adenotrophic endocrine disorders)), paraneoplastic syndromes (including neuro-paraneoplastic syndromes, such as Lambert-Eaton myasthenic syndr〇) Or Eton n-Lambert syndr〇me), zombie syndrome (10) ffman or sUff-person syndr〇me), Myelitis (such as allergic cerebrospinal inflammatory disease and experimental allergic rhinitis _), myasthenia gravis (such as thymoma-associated myasthenia gravis), cerebellar degeneration, neuromuscular rigidity, visual ocular dysfunction or Vision eye lining muscle array climbing syndrome (_) and sensory neuropathy, multifocal motor neuropathy, Sheehan's syndrome (SheeWs scan. (4), autologous 142552.doc -53- 201011047 immune hepatitis, chronic hepatitis, lupus-like hepatitis, giant cell hepatitis, chronic active hepatitis or autoimmune chronic active hepatitis, lymphocytic interstitial pneumonia, obstructive bronchiolitis (non-transplantation) with NSIP, Gu Li'an - white end syndrome
群(GuUlain-Barr0 syndrome)、伯格氏病(Berger's disease)(IgA 腎病變)、特發性IgA腎病變、線性IgA皮膚病、原發性膽 汁性肝硬化、肺硬變、自體免疫腸病症候群、腹腔疾病 (Celiac disease、Coeliac disease)、乳糜瀉(celiac sprue)(麩 質腸病)、難治性口炎性腹瀉、特發性脂肪瀉、冷球蛋白 血症、肌肉萎縮性側索硬化(ALS ;盧伽雷氏病(L〇u Gehrig's disease))、冠狀動脈疾病、自體免疫耳病(諸如自 體免疫内耳疾病(AIED))、自體免疫聽力喪失、視性眼陣 攣肌陣攣症候群(OMS)、多軟骨炎(諸如難治性或復發性多 軟骨炎)、肺泡蛋白質沈積症、澱粉樣變性病、鞏膜炎、 非癌性淋巴球增多症、原發性淋巴球增多症(包括單株B細 胞淋巴球增多症(例如良性單株γ球蛋白症及意義未明之單 株丫球蛋白症(MGUS)))、周邊神經病、副腫瘤症候群、離 子通道病(諸如癲癇症、偏頭痛、心律不整、肌肉病、耳 聾失月週期性麻療及CNS之離子通道病)、自閉症、炎 性肌病、局灶性節段性腎小球硬化(FSGS)、内分泌眼病、 葡萄膜視網膜炎、脈絡膜網膜炎、自體免疫肝病、肌肉纖 維疼痛、多發性时泌衰竭、施密特m群(sehmi_ 咖咖)、腎上腺炎、胃萎縮、早老性癡呆、脫_病 (諸如自體免疫脫髓鞘病)、糖尿病性腎病變、德雷斯勒氏 症候群(Dressler,s syndr〇me)、斑禿、crest症候群㈤沈 142552.doc -54- 201011047Group (GuUlain-Barr0 syndrome), Berger's disease (IgA nephropathy), idiopathic IgA nephropathy, linear IgA skin disease, primary biliary cirrhosis, pulmonary cirrhosis, autoimmune bowel Symptoms, Celiac disease, Coeliac disease, celiac sprue (gluten enteropathy), refractory stomatitis diarrhea, idiopathic steatorrhea, cryoglobulinemia, muscle atrophic lateral cord Hardening (ALS; L〇u Gehrig's disease), coronary artery disease, autoimmune ear disease (such as autoimmune inner ear disease (AIED)), autoimmune hearing loss, visual ocular array Ankle syndrome (OMS), polychondritis (such as refractory or recurrent polychondritis), alveolar proteinosis, amyloidosis, scleritis, non-cancerous lymphocytosis, primary lymphocytosis ( Including single-cell B-cell lymphadenopathy (such as benign individual gamma globulin disease and unexplained single globulin globulin (MGUS)), peripheral neuropathy, paraneoplastic syndrome, ion channel disease (such as epilepsy, partial headache, Arrhythmia, muscle disease, deafness, periodic anesthesia and CNS ion channel disease), autism, inflammatory myopathy, focal segmental glomerulosclerosis (FSGS), endocrine eye disease, uveal retina Inflammation, choroidal retinitis, autoimmune liver disease, muscle fiber pain, multiple-time endocrine failure, Schmidt group (sehmi_ café), adrenal gland inflammation, gastric atrophy, Alzheimer's disease, de- _ disease (such as autoimmune Demyelinating disease, diabetic nephropathy, Dresler's syndrome (Dressler, s syndr〇me), alopecia areata, crest syndrome (5) Shen 142552.doc -54- 201011047
著病、雷諾氏現象(Raynaud's phenomenon)、食道功能異 常、指端硬皮病及毛細管擴張症)、男女自體免疫不孕 症、混合型結締組織疾病、卡格氏病(Chagas* disease)、風 濕熱、習慣性流產、農民肺、多形性紅斑、心切開術後症 候群、柯興氏症候群(Cushing's syndrome)、飼鳥者肺 (bird-fancier's lung)、過敏性肉芽腫性血管炎、良性淋巴 細胞性血管炎、阿爾波特氏症候群(Alport's syndrome)、 肺泡炎(諸如過敏性肺泡炎及纖維化肺泡炎)、間質性肺疾 病、輸血反應、麻風病、癌疾、利什曼體病(leishmaniasis)、 錐蟲病(kypanosomiasis)、血吸蟲病、鮰蟲病、趟菌病、薩 姆特氏(Sampter's)症候群、卡普蘭氏症候群(Caplan's syndrome)、登革病(dengue)、心内膜炎、内心肌纖維化、 彌漫性間質性肺纖維化、間質性肺纖維化、特發性肺纖維 化、囊腫性纖維化、眼内炎、持久性隆起性紅斑、胎兒紅 血球母細胞增多症、嗜伊紅血球性筋膜炎、舒曼氏症候群 (Shulman's syndrome)、費爾蒂氏症候群(Felty's syndrome)、 絲蟲病、睫狀體炎(諸如慢性睫狀體炎、異色性睫狀體 炎、虹膜睫狀體炎或富克氏斯睫狀體炎(Fuch's cyclitis))、 亨諾-許蘭二氏紫癜(Henoch-Schonlein purpura)、人類免疫 缺陷病毒(HIV)感染、埃可病毒感染(echovirus infection)、 心肌病、阿茲海默氏病(Alzheimer's disease)、細小病毒感 染、風疹病毒感染、疫苗接種後症候群、先天性風疹感 染、埃-巴二氏病毒感染(Epstein-Barr virus infection)、流 行性腿腺炎、伊氏症候群(Evan's syndrome)、自體免疫性 142552.doc -55- 201011047 腺衷竭、西登哈姆氏舞蹈病(Sydenham’s chorea)、鏈球菌 感染後腎炎、血栓閉塞性脈管炎、曱狀腺毒症、脊髓癆、 絨膜炎、巨細胞多肌痛、内分泌眼病、慢性過敏性肺炎、 乾躁性角膜結膜炎、流行性角膜結膜炎、特發性腎病症候 群、最小變化腎病變、良性家族性及缺血·再灌注損傷、 視網膜自體免疫性、關節炎症、支氣管炎、慢性阻塞性氣 管疾病、矽肺病、口瘡、口瘡性口炎、動脈硬化性病症、 不形成精子症(aspermiogenese)、自體免疫溶血、伯克氏疾 病(Boeck's disease)、冷凝球蛋白血症、杜普特氏攣縮 (Dupuytren's contracture)、晶狀體過敏性眼内膜炎、過敏 性腸炎、麻瘋結節性紅斑、特發性面癱、慢性疲勞症候 群、風漁性發燒(febris rheumatica)、哈-里二氏疾病 (Hamman-Rich’s disease)、感音神經性聽力喪失、陣發性 血紅素尿、性腺低能症、局部性迴腸炎、白血球減少症、 感染性單核血球病、橫貫性脊髓炎、原發性特發性黏液水 腫、腎病、父感神經性眼炎(ophthalmia symphatica)、肉 芽腫性睪丸炎、胰炎、急性多神經根炎、壞疽性膿皮病、 奎萬氏甲狀腺炎(Quervain's thyreoiditis)、後天性脾臟萎 縮、由於抗精子抗體引起之不孕症、非惡性胸腺瘤、白斑 病、SCID及艾伯斯坦-巴爾病毒相關聯之疾病(EpStein-Barr virus-associated disease)、後天性免疫缺乏症候群 (AIDS)、寄生蟲疾病(諸如亞曼利什曼(Leishmania))、毒性 休克症候群、食物中毒、涉及T細胞浸潤之病況、白血球 黏附缺陷、與細胞激素及T_淋巴細胞介導之急性及延遲性 142552.doc •56- 201011047 過敏相關聯之免疫系統反應、涉及白血球渗出之疾病、多 @官損傷症候群、抗原抗體複合介導之疾病、抗腎小球基 底膜疾病、過敏性神經炎'自體免疫多内分泌病、印巢 炎、原發性黏液水腫、自體免疫萎縮性胃炎、交感神經性 眼炎、風濕性疾病、混合型結締組織疾病、腎病症候群、 騰島炎、多内分泌衰竭、周邊神經病、工型自體免疫多腺 症候群、成人型特發性副曱狀腺低能症(A〇IH)、全禿、擴 張型心肌病、獲得性大皰性表皮鬆懈(epidermuolisi's 明bullosa aequisita,EBA)、血色素沈著症、心肌炎腎病 症候群、原發性硬化性膽管炎、化膿性或非化膿性竇炎、 急性或慢性竇炎、篩骨、前葉、頷骨或蝶骨竇炎、嗜伊紅 • 血球相關病症(諸如嗜伊紅血球增多、肺浸潤性嗜伊紅血 • 球增多、嗜伊紅血球增多肌痛症候群、呂弗勒氏症候群 (Loffler’s syndr〇me)、慢性嗜伊紅血球增多肺炎、熱帶肺 嗜伊紅血球増多、支氣管肺炎性麴菌症、曲黴菌病或含有 嗜伊紅血球之肉芽腫)、重度過敏、血清陰性脊椎關節 炎、多内分泌自體免疫疾病、硬化性膽管炎、鞏膜、上鞏 膜、慢性皮膚黏膜念珠菌病、布魯頓氏症候群(Brut〇n,s syndrome);嬰兒暫時性低γ球蛋白血症;維_奥二氏症候群 (Wiskott-Aldrich syndrome)、共濟失調毛細管擴張症、與 朦原蛋白疾病相關聯之自體免疫病症、風濕、神經病、缺 血再灌注病症、企壓反應降低、血管功能障礙、血管擴 張、組織損傷、心血管缺血、痛覺過敏、大腦缺血及伴發 血管生成之疾病、過敏症、絲球體腎炎、再灌注損傷、心 142552.doc -57- 201011047 肌或其他組織之再灌注損傷、伴有急性炎性成分之皮膚 病、急性化膿性腦脊膜炎或其他中框神經系統發炎性病 症、眼睛及眼眶發炎性病症、顆粒球輸注相關症候群、細 胞激素誘發性毒性、急性嚴重炎症、慢性難治性炎症、腎 盂炎、肝硬變、糖尿病性視網膜病、糖尿病性大動脈病 症、動脈内增生、消化性潰瘍、心瓣炎及子宮内膜異位。 「抗血管生成劑」或「血管生成抑制劑」係指直接地或 間接地抑制血管生成、血管發生或非所要之血管通透性的 小分子量物質、聚核苷酸、多肽、分離蛋白、重組蛋白、 抗體或其結合蛋白或融合蛋白。舉例而言,抗血管生成劑 為如上文所定義之抗體或抗血管生成劑之其他拮抗劑,例 如抗VEGF之抗體(例如貝伐單抗(bevacizumab)(AVASTIN7)、 bHl、bHl-44、bHl-81)、抗 VEGF受體之抗體、阻斷VEGF受 體信號傳導之小分子(例如PTK787/ZK2284、SU6668、 SUTENT/SU11248(舒尼替尼蘋果酸鹽(sunitinib malate))、 AMG706)。抗血管生成劑亦包括天然血管生成抑制劑,例 如血管抑制素、内皮抑制素等。參見例如Klagsbrun及 D’Amore,/!«««· J^v.尸53:217-39 (1991) ’ Streit及 Detmar,22:3172-3179 (2003)(例如,表3列出惡 性黑色素瘤之抗血管生成療法);Ferrara及Alital0,Disease, Raynaud's phenomenon, abnormal esophageal function, fingertip scleroderma and telangiectasia, autoimmune infertility for men and women, mixed connective tissue disease, Chagas* disease, Rheumatic fever, habitual abortion, peasant lung, erythema multiforme, post-cardiac surgery syndrome, Cushing's syndrome, bird-fancier's lung, allergic granulomatous vasculitis, benign lymph Cellular vasculitis, Alport's syndrome, alveolitis (such as allergic alveolitis and fibrotic alveolitis), interstitial lung disease, transfusion reaction, leprosy, cancer, leishmaniasis (leishmaniasis), trypanosomiasis (kypanosomiasis), schistosomiasis, ascariasis, sputum disease, Samter's syndrome, Caplan's syndrome, dengue, endocardium Inflammation, internal myocardial fibrosis, diffuse interstitial pulmonary fibrosis, interstitial pulmonary fibrosis, idiopathic pulmonary fibrosis, cystic fibrosis, endophthalmitis, persistent bulging red , fetal red blood cell blastosis, eosinophilic fasciitis, Shulman's syndrome, Felty's syndrome, filariasis, ciliary body inflammation (such as chronic ciliary inflammatory disease) , heterochromic ciliary body inflammation, iridocyclitis or Fuch's cyclitis, Henoch-Schonlein purpura, human immunodeficiency virus (HIV) Infection, echovirus infection, cardiomyopathy, Alzheimer's disease, parvovirus infection, rubella virus infection, post-vaccination syndrome, congenital rubella infection, Epstein-Barr virus infection (Epstein-Barr virus infection), epidemic legitis, Evan's syndrome, autoimmune 142552.doc -55- 201011047 Glandular exhaustion, Sydenham's chorea, chain Nephritis, thromboangiitis, scorpion venom, spinal cord hernia, chorioitis, giant cell polymyalgia, endocrine eye disease, chronic allergic pneumonia, dry cornea after cochlear infection Conjunctivitis, epidemic keratoconjunctivitis, idiopathic renal syndrome, minimally variable nephropathy, benign familial and ischemic/reperfusion injury, autoimmune of the retina, joint inflammation, bronchitis, chronic obstructive airway disease, silicosis, Aphthous, aphthous stomatitis, arteriosclerotic disease, aspermiogenese, autoimmune hemolysis, Boeck's disease, condensed globulinemia, Dupuytren's contracture, Lens allergic endophthalmitis, irritable bowel, jatropha nodular erythema, idiopathic facial paralysis, chronic fatigue syndrome, febris rheumatica, Hamman-Rich's disease, sense Phonological hearing loss, paroxysmal hemoglobinuria, gonadal dystrophy, colitis, leukopenia, infectious mononuclear hematocytosis, transverse myelitis, primary idiopathic mucinous edema, kidney disease, father Ophthalmia symphatica, granulomatous smear, pancreatitis, acute polyradiculitis, gangrenous pyoderma, Quervain's thyreoiditis, acquired spleen atrophy, infertility due to anti-sperm antibodies, non-malignant thymoma, leukoplakia, SCID and disease associated with Eberstein-Barr virus (EpStein-Barr virus- Associated disease), acquired immunodeficiency syndrome (AIDS), parasitic diseases (such as Leishmania), toxic shock syndrome, food poisoning, conditions involving T cell infiltration, white blood cell adhesion defects, and cytokines and T_lymphocyte-mediated acute and delayed 142552.doc •56- 201011047 Allergic-related immune system response, diseases involving leukocyte exudation, multiple @官-injury syndrome, antigen-antibody complex-mediated disease, anti-kidney Basement membrane disease, allergic neuritis 'autoimmune endocrine disease, nestitis, primary mucinous edema, autoimmune atrophic gastritis, sympathetic ophthalmia, rheumatic diseases, mixed connective tissue disease, Kidney syndrome, Tengdao inflammation, multiple endocrine failure, peripheral neuropathy, autoimmune polyadenosine syndrome, adult type Sexual hypothyroidism (A〇IH), total alopecia, dilated cardiomyopathy, acquired bullous epidermis (epidermuolisi's bullosa aequisita, EBA), hemochromatosis, myocarditis, renal disease, primary sclerosis Cholangitis, purulent or non-suppurative sinusitis, acute or chronic sinusitis, ethmoid, anterior lobe, humerus or sphenoid sinusitis, eosinophilia • blood cell-related disorders (such as eosinophilia, pulmonary invasive eosinophilia Blood • Ball increase, eosinophilic myalgia syndrome, Loffler's syndr〇me, chronic eosinophilic pneumonia, tropical lung eosinophilia, bronchial pneumonia, aspergillosis Or granuloma with eosinophils), severe allergies, seronegative spinal arthritis, multiendocrine autoimmune disease, sclerosing cholangitis, sclera, upper sclera, chronic mucocutaneous candidiasis, Bruton's syndrome (Brut 〇n, s syndrome); infants with transient hypogammaglobulinemia; Wiskott-Aldrich syndrome, ataxia telangiectasia, Autoimmune disorders associated with prion protein disease, rheumatism, neuropathy, ischemia-reperfusion disorders, reduced stress response, vascular dysfunction, vasodilation, tissue damage, cardiovascular ischemia, hyperalgesia, cerebral ischemia and Diseases associated with angiogenesis, allergies, spheroid nephritis, reperfusion injury, heart 142552.doc -57- 201011047 Reperfusion injury of muscle or other tissues, skin disease with acute inflammatory components, acute suppurative cerebral ridge Membrane inflammation or other inflammatory diseases of the mid-frame nervous system, inflammatory diseases of the eyes and eyelids, syndromes associated with granule ball infusion, cytokine-induced toxicity, acute severe inflammation, chronic refractory inflammation, pyelonephritis, cirrhosis, diabetic retinopathy , diabetic aortic disease, intra-arterial hyperplasia, peptic ulcer, heart disease and endometriosis. "Anti-angiogenic agent" or "angiogenesis inhibitor" refers to small molecular weight substances, polynucleotides, peptides, isolated proteins, recombinants that directly or indirectly inhibit angiogenesis, angiogenesis or unwanted vascular permeability. Protein, antibody or binding protein or fusion protein thereof. For example, the anti-angiogenic agent is an antibody or an anti-angiogenic agent other than an antagonist, such as an anti-VEGF antibody (eg, bevacizumab (AVASTIN7), bHl, bHl-44, bHl) -81), an antibody against the VEGF receptor, a small molecule that blocks VEGF receptor signaling (eg, PTK787/ZK2284, SU6668, SUTENT/SU11248 (sunitinib malate), AMG706). Anti-angiogenic agents also include natural angiogenesis inhibitors such as angiostatin, endostatin and the like. See, for example, Klagsbrun and D'Amore, /! «««· J^v. Corpse 53:217-39 (1991) 'Streit and Detmar, 22:3172-3179 (2003) (for example, Table 3 lists malignant melanoma Anti-angiogenic therapy); Ferrara and Alital0,
Mdic/加 5(12):1359-1364 (1999) ; Tonini等人,⑶以加, 22:6549-6556 (2003)(例如,表2列出抗血管生成因子),及 Sato址X ⑽山8:200·206 (2〇〇3)(例如表1列出臨 床試驗中利之抗*管生錢)。纟管生&失調可引起許 -58· 142552.doc 201011047 多可由本發明之組合物及方法治療之病症。該等病症包括 非贅生性與贅生性病況兩者。Mdic/Plus 5(12): 1359-1364 (1999); Tonini et al., (3) Iga, 22:6549-6556 (2003) (for example, Table 2 lists anti-angiogenic factors), and Sato site X (10) 8:200·206 (2〇〇3) (for example, Table 1 lists the antibiotics in the clinical trials). The sputum tube & dysregulation can cause a condition that can be treated by the compositions and methods of the invention. Such conditions include both non-neoplastic and neoplastic conditions.
如本文中所用之術語「細胞毒性劑」係指能抑制或阻止 細胞之功能及/或引起細胞破壞之物質。該術語意欲包括 放射性同位素(例如,At211、I131、1丨25、Y90、Re186、 Re188、Sm153、Bi212、Ra223、P32及 Lu之放射性同位素); 化療劑,例如甲胺嗓吟(methotrexate)、阿徽素 (adriamicin)、長春花生物驗(vinCa alkaloid)(長春.新驗 (vincristine)、長春花鹼(vinblastine)、依託泊苷 (etoposide))、阿黴素(doxorubicin)、美法侖(melphalan)、 絲裂黴素C(mitomycin C)、苯丁 酸氮芥(chlorambucil)、道 諾黴素(daunorubicin)或其他插入劑、酶及其片段(諸如核 酸分解酶)、抗生素及毒素(諸如細菌、真菌、植物或動物 來源之小分子毒素或酶促活性毒素,包括其片段及/或變 異體),以及本文所揭示之各種抗腫瘤劑或抗癌劑。其他 細胞毒性劑描述於本文中。殺腫瘤劑引起腫瘤細胞之破 壞0 「化療劑」為適用於治療癌症之化合物。化療劑之實例 包括:烷化劑’諸如硫替派(thiotepa)及CYTOXAN®環磷 醯胺;烧基確酸醋類’諸如白消安(busulfan)、英丙舒凡 (improsulfan)及哌泊舒凡(pip0suifan);氮丙啶類,諸如苯 唑多巴(benzodopa)、卡巴醌(carb〇quone)、米特多巴 (meturedopa)及尤利多巴(uredopa);伸乙基亞胺類及甲基 密胺類,包括六曱密胺(altretamine)、三伸乙基密胺 142552.doc -59- 201011047 (triethylenemelamine)、 三 伸乙基 填醯胺 (trietylenephosphor amide)、三伸乙基硫代填醯胺 (triethiylenethiophosphoramide)及 三經甲 密胺 (trimethylolomelamine);多聚乙.醯類(acetogenins)(尤其為 布拉他辛(bullatacin)及布拉他辛嗣(bullatacinone)) ; δ-9-四氫大麻盼(delta-9-tetrahydrocannabinol)(屈大麻紛 (dronabinol, MARINOL®)) ; β-拉帕酮(beta-lapachone);拉 帕醇(lapaehol);秋水仙驗(colchicine);樺木酸(betulinic acid);喜樹驗(camptothecin)(包括合成類似物拓朴替康 (topotecan)(HYCAMTIN®)、CPT-11(伊諾替康(irinotecan ; CAMPTOSAR®)、乙酿基喜樹驗、莨菪亭(scopolectin)及9-胺基喜樹驗);苔蘚蟲素(bryostatin);卡利斯塔汀 (callystatin) ; CC-1065(包括其阿多來新(adozelesin)、卡折 來新(carzelesin)及比折來新(bizelesin)合成類似物);足葉 草毒素(podophyllotoxin);足葉草酸(podophyllinic acid); 替尼泊武(teniposide);念珠藻環肽(cryptophycin)(尤其念 珠藻環肽1及念珠藻環狀8);海兔毒素(dolastatin);多卡米 辛(duocarmycin)(包括合成類似物 KW-2189 及 CB1-TM1); 艾權素(eleutherobin);水鬼蕉驗(pancratistatin);沙考的 汀(sarcodictyin) ·’ 海綿他 丁(spongistatin);氮芥類,諸如 苯丁酸氣芥、萘氣芥(chlornaphazine)、環鱗醯胺、雌氮芬 (estramustine)、異環填酿胺(ifosfamide)、氮芥 (mechlorethamine)、鹽酸氮芥氧化物、美法侖、新恩比興 (novembichin)、膽留醇對苯乙酸氮芥(phenesterine)、松龍 142552.doc -60- 201011047 苯芬(prednimustine)、氣乙環雄醯胺(trofosfamide)、尿, 咬氮芬(uracil mustard);硝基腺類,諸如亞确脲氮芥 (carmustine)、氣腺黴素(chlorozotocin)、福莫司汀 (fotemustine)、洛莫司汀(lomustine)、尼莫司汀(nimustine) 及雷莫司汀(ranimnustine);抗生素類,諸如烯二炔抗生素 (例如,卡奇黴素(calicheamicin),尤其刺孢黴素γ1(參見, 例如 Agnew,Chem Inti. Ed· Engl·,33:183-186 (1994));達 内黴素(dynemicin),包括達内黴素A;埃斯培拉黴素 (esperamicin);以及新製癌菌素(neocarzinostatin)發色團 及相關色蛋白烯二炔抗生素發色團)、阿克拉黴素 (aclacinomysins)、放線菌素(actinomycin)、蒽黴素 (authramycin)、偶 It 絲胺酸(azaserine)、博萊黴素 (bleomycin)、放線菌素 C(cactinomycin)、卡柔比星The term "cytotoxic agent" as used herein refers to a substance which inhibits or prevents the function of cells and/or causes destruction of cells. The term is intended to include radioisotopes (eg, radioactive isotopes of At211, I131, 1丨25, Y90, Re186, Re188, Sm153, Bi212, Ra223, P32, and Lu); chemotherapeutic agents, such as methotrexate, Adriamicin, vinca alkaloid (vinchun, new vincristine, vinblastine, etoposide), doxorubicin, melphalan ), mitomycin C, chlorambucil, daunorubicin or other intervening agents, enzymes and fragments thereof (such as nucleases), antibiotics and toxins (such as bacteria) Small molecule toxins or enzymatically active toxins, including fungal, plant or animal derived sources, including fragments and/or variants thereof, as well as various antitumor or anticancer agents disclosed herein. Other cytotoxic agents are described herein. Tumor killing agents cause destruction of tumor cells. 0 "Chemotherapeutic agents" are compounds suitable for the treatment of cancer. Examples of chemotherapeutic agents include: alkylating agents such as thiotepa and CYTOXAN® cyclophosphamide; succinic acid vinegars such as busulfan, improsulfan and piperazine Shufan (pip0suifan); aziridines, such as benzodopa, carb〇quone, meturedopa and uredopa; exoethylenimines and Methyl melamines, including altretamine, tri-ethyl melamine 142552.doc -59- 201011047 (triethylenemelamine), trietylenephosphoramide, tri-ethyl thio Triethiylenethiophosphoramide and trimethylolomelamine; acetogenins (especially bullatacin and bullatacinone); δ-9- Deltaa-tetrahydrocannabinol (dronabinol, MARINOL®); beta-lapachone; lapaehol; colchicine; betulinic acid (betulinic acid); camptothecin (including synthetic analog topography) (topotecan) (HYCAMTIN®), CPT-11 (irinotecan; CAMPTOSAR®, B. sylvestre, scopolectin, and 9-aminopyridine); bryostatin ); calistatin (CCallystatin); CC-1065 (including its adozelesin, carzelesin, and bizelesin synthetic analogues); Podophyllotoxin); podophyllinic acid; teniposide; cryptophycin (especially Nostoccal cyclic peptide 1 and Nostoccal ring 8); dolphin (dolastatin); Doka Duocarmycin (including synthetic analogues KW-2189 and CB1-TM1); eleutherobin; pancratistatin; sarcodictyin · spongistatin; Nitrogen mustards, such as benzobutyric acid mustard, chlornaphazine, cyclosporin, estramustine, ifosfamide, mechlorethamine, and nitrogen mustard , melphabine, new engembichin, cholesterol to phenylacetate mustard (pheneste Rine), 松龙 142552.doc -60- 201011047 phenylfenac (prednimustine), trofosfamide, urine, uracil mustard; nitrogland, such as arginine mustard ( Carmustine), chlorozotocin, fotemustine, lomustine, nimustine, and ranimnustine; antibiotics, such as enediyne Antibiotics (for example, calicheamicin, especially calicheamicin gamma 1 (see, eg, Agnew, Chem Inti. Ed Engl, 33: 183-186 (1994)); dynemicin, Including danamycin A; esperamicin; and neocarzinostatin chromophore and related chromophore diacetylene antibiotic chromophore, aclacinomysins, Actinomycin, authramycin, azaserine, bleomycin, cactinomycin, carbofurin
(carabicin)、洋紅黴素(carminomycin)、嗜癌徽素 (carzinophilin)、色黴素(chromomycinis)、放線菌素 D(dactinomycin)、道諾徽素、地托比星(detorubicin)、6-重氮基-5-側氧基-L-正白胺酸、ADRIAMYCIN®阿黴素(包 括嗎啉幷阿黴素、氰基嗎啉幷阿黴素、2-吡咯幷阿黴素及 去氧阿黴素)、表柔比星(epirubicin)、依索比星 (esorubicin)、伊達比星(idarubicin)、麻西羅黴素 (marcellomycin)、絲裂黴素(mitomyeins)(諸如絲裂黴素 C)、黴紛酸(mycophenolic acid)、諾加黴素(nogalamycin)、 撖禮黴素(olivomycins)、培洛黴素(peplomycin)、潑非黴 素(potfiromycin)、嗓吟黴素(puromycin)、三鐵阿黴素 142552.doc -61 - 201011047 (quelamycin)、羅多比星(rodorubicin)、鏈黑菌素 (streptonigrin)、鏈腺黴素(streptozocin)、殺結核菌素 (tubercidin)、烏苯美司(ubenimex)、淨司他丁 (zinostatin)、佐柔比星(zorubicin);抗代謝物類,諸如甲 胺嗓吟及 5-氟尿喊咬(5-fluorouracil,5-FU);葉酸類似 物,諸如新嗓吟(denopterin)、甲胺嗓吟、蝶羅吟 (pteropterin)、三曱曲沙(trimetrexate);嗓呤類似物,諸如 氟達拉濱(fludarabine)、6-酼基嗓吟(6-mercaptopurine)、 0塞味嗓呤(thiamiprine)、硫鳥嗓吟(thioguanine);鳴咬類似 物,諸如環胞苦(ancitabine)' 阿紮胞苷(azacitidine)、6-1 雜尿苷(6-azauridine)、卡莫氟(carmofur)、阿糖胞苷 (cytarabine)、雙去氧尿苦(dideoxyuridine)、去氧氣尿苷 (doxifluridine)、依話他濱(enocitabine)、氟尿普 (floxuridine);雄激素,諸如卡普睾酮(calusterone)、屈他 雄酮丙酸醋(dromostanolone propionate)、環硫雄酵 (epitiostanol)、美雄烧(mepitiostane)、睾内醋 (testolactone);抗腎上腺劑,諸如胺基格魯米特 (aminoglutethimide)、米托坦(mitotane)、曲洛司坦 (trilostane);葉酸補充劑,諸如亞葉酸(frolinic acid);醋 葡搭内醋(aceglatone);酸碟醯胺糖發(aldophosphamide glycoside);胺基乙醯丙酸(aminolevulinic acid);恩尿鳴 咬(eniluracil);胺笨 α丫咬(amsacrine);倍思塔布 (bestrabucil);比生群(bisantrene);艾達曲卡 (edatraxate);得弗伐胺(defofamine);秋水仙胺 142552.doc -62- 201011047(carabicin), carminomycin, carzinophilin, chromomycinis, dactinomycin, donovan, detorubicin, 6-weight Nitro-5-oxo-L-positral leucine, ADRIAMYCIN® doxorubicin (including morpholinium doxorubicin, cyanomorpholine doxorubicin, 2-pyrrole doxorubicin, and deoxygenated Phytomycin), epirubicin, esorubicin, idarubicin, marcellomycin, mitomyeins (such as mitomycin C) ), mycophenolic acid, nogalamycin, olivomycins, peplomycin, potfiromycin, puromycin, Triamcinolone 142552.doc -61 - 201011047 (quelamycin), rodorubicin, streptonigrin, streptozocin, tubercidin, urinary benzene Ubimimex, zinostatin, zorubicin; antimetabolites such as methotrexate 5-fluorouracil (5-FU); folic acid analogues such as denopterin, methotrexate, pteropterin, trimetrexate; Analogs such as fludarabine, 6-mercaptopurine, thiamiprine, thioguanine; bite analogs, such as cyclosporine (ancitabine) 'azacitidine, 6-1-azauridine, carmofur, cytarabine, dideoxyuridine, deoxygenation Doxifluridine, enocitabine, floxuridine; androgens, such as calpressone, dromostanolone propionate, epitisolol ), mepitiostane, testolactone; anti-adrenal agents, such as aminoglutethimide, mitotane, trilostane; folic acid supplements, such as Folinic acid; vinegar vinegar (aceglatone); acid dish glycosides (aldophosphamide glycoside); aminolevulinic acid; eniluracil; amsacrine; bestrabucil; bisantrene; Edatraxate; defofamine; colchicine 142552.doc -62- 201011047
(demecolcine);地吖醒(diaziquone);艾弗尼辛 (elfornithine);依利醋錢(elliptinium acetate);埃坡徽素 (epothilone);乙環氧咬(etoglucid);石肖酸鎵(gallium nitrate);經基脈(hydroxyurea);香菇糠(lentinan);羅尼代 寧(lonidainine);類美登素(maytansinoids),諸如美登素 (maytansine)及胺沙托辛(ansamitocins);丙脒腙 (mitoguazone);米托蒽醌(mitoxantrone);莫比旦莫耳 (mopidanmol);硝爾靈(nitraerine);喷司他丁 (pentostatin);蛋胺氮芬(phenamet) ; °tb 柔比星 (pirarubicin);洛索蒽醌(losoxantrone) ; 2-乙基醯肼(2-ethylhydrazide);普魯苄肼(procarbazine) ; PSK® 多聽複合 物(JHS Natural Products, Eugene, OR);丙亞胺 (razoxane);根黴菌素(rhizoxin);西佐糖(sizofiran);螺鍺 (spirogermanium);細交鏈抱菌酮酸(tenuazonic acid);三 亞胺醌(triaziquone) ; 2,2·,2"-三氯三乙基胺;單端孢黴烯 族毒素(trichothecenes)(尤其為Τ-2毒素、韋拉庫林 A(verracurin A)、桿抱菌素 A(roridin A)及安奎定 (anguidine));烏拉坦(urethan);長春地辛(vindesine) (ELDISINE®,FILDESIN®);氮烯味胺(dacarbazine);甘 露醇氮芥(mannomustine);二漠甘露醇(mitobronitol);二 溴衛矛酵(mitolactol);雙漠丙基娘嗓(pipobroman);伽托 辛(gacytosine);阿拉伯糖普(arabinoside)(「Ara-C」);硫 替派(thiotepa);紫杉醇(taxoids),例如TAXOL®太平洋紫 杉醇(Bristol-Myers Squibb Oncology, Princeton,N.J.); 142552.doc -63- 201011047 ABRAXANETM(不含克列莫佛(Cremophor))(亦即,太平洋 紫杉醇之白蛋白工程化奈米粒子調配物)(American Pharmaceutical Partners, Schaumberg,Illinois)及 TAXOTERE® 多西他赛(doxetaxel)(Rh6ne-Poulenc Rorer, Antony,France); 苯丁 酸氮芬(chloranbucil);吉西他濱(gemcitabine) (GEMZAR®) ; 6-石荒鳥嗓吟(6-thioguanine);疏基嗓吟;甲 胺嗓呤;始類似物,諸如順始(cisplatin)及卡翻 (carboplatin);長春花驗(vinblastine)(VELBAN®);始;依 託泊苦(VP-16);異環墙醯胺;米托蒽酿(mitoxantrone) ; ©馨 長春新驗(ONCOVIN®);奥沙利銘(oxaliplatin);曱醯四氫 葉酸(leucovovin);長春瑞賓(vinorelbine) (NAVELBINE®); 諾凡特龍(novantrone);依達曲沙(edatrexate);道諾黴素 . (daunomycin);胺基嗓D令;伊班膦酸鹽(ibandronate);拓 撲異構酶抑制劑RFS 2000 ;二氟曱基鳥胺酸 (difluorometlhylornithine)(DMFO);類視色素類,諸如視 黃酸;卡培他濱(capecitabine)(XELODA®);以上任一者之醫 藥學上可接受之鹽、酸或衍生物;以及以上兩種或兩種以 u’ 上之組合,諸如CHOP(環磷醯胺、阿黴素、長春新鹼與潑 尼松龍(prednisolone)之組合療法的縮寫)及FOLFOX(奥沙 利翻(oxaliplatin)(ELOXATINTM)與5-FU及甲酿四氫葉酸組 合之治療方案的縮寫)。 此定義中亦包括抗激素劑,其用於調節、降低、阻斷或 抑制可促進癌症生長之激素的作用且其常為全身性或整體 治療之形式。其本身可為激素。實例包括抗雌激素及選擇 142552.doc 201011047 性雌激素受體調節劑(SERM),包括(例如)他莫西芬 (tamoxifen)(包括 NOLVADEX® 他莫西芬)、EVISTA® 雷洛 西芬(raloxifene)、屈洛昔芬(droloxifene)、4-經基他莫西 芬、曲沃昔芬(trioxifene)、雷洛昔芬(keoxifene)、 LY117018、奥那司酮(onapristone)及 FARESTON®托瑞米 芬(toremifene);抗黃體酮;雌激素受幾下調劑(ERD);起 抑止或制止卵巢之作用之藥劑,例如黃體素釋放激素 (LHRH)促效劑,諸如LUPRON®及ELIGARD®乙酸亮丙瑞 林(leuprolide acetate)、乙酸戈舍瑞林(goserelin acetate)、 乙酸布舍瑞林(buserelin acetate)及曲特瑞林(tripterelin); 其他抗雄激素,諸如氟他胺(flutamide)、尼魯米特 (nilutamide)及必卡他胺(bicalutamide);及抑制調控腎上腺 中雌激素產生之酶芳香酶的芳香酶抑制劑,諸如4(5)-咪 0坐、胺基格魯米特、MEGASE®乙酸曱地孕酮(megestrol acetate)、AROMASIN® 依西美坦(exemestane)、福美司坦(demecolcine); diaziquone; elfornithine; elliptinium acetate; epothilone; etoglucid; gallium nitrate ;; hydroxyurea; lentinan; lonidainine; maytansinoids, such as maytansine and ansamitocins; (mitoguazone); mitoxantrone; mopidanmol; nitraerine; pentostatin; phennamet; °tb Pirarubicin; losoxantrone; 2-ethylhydrazide; procarbazine; PSK® multi-audio complex (JHS Natural Products, Eugene, OR); propylimine (razoxane); rhizoxin; sizofiran; spirogermanium; tenuazonic acid; triaziquone; 2, 2·, 2" - trichlorotriethylamine; trichothecenes (especially Τ-2 toxin, veraculinin A (verracurin) A), roridin A and anguidine; urethan; vindesine (ELDISINE®, FILDESIN®); azene (dacarbazine); Mannomustine; mitobronitol; mitolactol; pipobroman; gacytosine; arabinoside ("Ara -C"); thiotepa; taxoids such as TAXOL® Pacific Paclitaxel (Bristol-Myers Squibb Oncology, Princeton, NJ); 142552.doc -63- 201011047 ABRAXANETM (excluding Klemophor ( Cremophor)) (ie, paclitaxel engineered nanoparticle formulations of Pacific Paclitaxel) (American Pharmaceutical Partners, Schaumberg, Illinois) and TAXOTERE® doxetaxel (Rh6ne-Poulenc Rorer, Antony, France); Chloranbucil; gemcitabine (GEMZAR®); 6-stone guanine (6-thioguanine); thioglycan; methotrexate; initial analogue, such as cisplatin ) and card turned (carboplatin); Changchun flower test (vinblast Ine) (VELBAN®); beginning; relying on bitter (VP-16); heterocyclic decylamine; mitoxantrone; © Xinchunxin (ONCOVIN®); oxaliplatin; Leucovovin; vinorelbine (NAVELBINE®); Novantrone; edatrexate; daunomycin; Ibandronate; topoisomerase inhibitor RFS 2000; difluorometlhylornithine (DMFO); retinoids such as retinoic acid; capecitabine (XELODA®); a pharmaceutically acceptable salt, acid or derivative of any of the above; and combinations of the two or more of the above, such as CHOP (cyclophosphamide, doxorubicin, periwinkle) Abbreviation for the combination therapy of neobase with prednisolone) and FOLFOX (abbreviation for the treatment regimen of oxaliplatin (ELOXATINTM) combined with 5-FU and formic acid). Also included in this definition are anti-hormonal agents which are used to modulate, reduce, block or inhibit the action of hormones which promote cancer growth and which are often in the form of systemic or holistic treatment. It can be a hormone itself. Examples include anti-estrogen and selection 142552.doc 201011047 sex estrogen receptor modulator (SERM), including, for example, tamoxifen (including NOLVADEX® tamoxifen), EVISTA® raloxifene ( Raloxifene), droloxifene, 4- tacroxoxene, trioxifene, keoxifene, LY117018, onapristone, and FARESTON® Torre Toremifene; anti-progesterone; estrogen by a few adjustments (ERD); agents that inhibit or stop the action of the ovaries, such as lutein releasing hormone (LHRH) agonists, such as LUPRON® and ELIGARD® acetate Leuprolide acetate, goserelin acetate, buserelin acetate, and tripterelin; other antiandrogens, such as flutamide, nitrite Nilutamide and bicalutamide; and aromatase inhibitors that inhibit the regulation of estrogen production by the estrogen in the adrenal gland, such as 4(5)-miso, aminogglutamine, MEGASE® quercetin acetate (megestrol a Cetate), AROMASIN® exemestane, fulmestan
(formestanie)、法倔唾(fadrozole)、RIVISOR® 伏氯嗤 (vorozole)、FEMARA® 來曲0坐(letrozole)及 ARIMIDEX® 阿 那曲峻(anastrozole)。此外,化療劑之該定義包括:雙膦 酸鹽,諸如氯屈膦酸鹽(clodronate)(例如,BONEFOS®或 OSTAC®)、DIDROCAL® 依替膦酸鹽(etidronate)、NE-58095、ZOMETA®唑來膦酸/唑來膦酸鹽、FOSAMAX®阿 舍膦酸鹽(alendronate) 、AREDIA®帕米膦酸鹽 (pamidronate)、SKELID® 替魯膦酸鹽(tiludronate)或 ACTONEL®利塞膦酸鹽(risedronate);以及曲沙他濱 142552.doc -65- 201011047 (troxacitabine)(l,3-二氧戊環核苷胞嘯咬類似物);反義寡 核苷酸,尤其抑制基因在牽涉於異常細胞增殖中之信號傳 導路徑中之表現的反義募核苷酸,諸如PKC-α、Raf、H-Ras及表皮生長因子受體(EGF-R);疫苗,諸如 THERATOPE®疫苗及基因療法疫苗,例如ALLOVECTIN® 疫苗、LEUVECTIN® 疫苗及 VAXID®疫苗;LURTOTECAN® 拓撲異構酶1抑制劑;ABARELIX® rmRH ;二對甲苯磺酸 拉帕替尼(lapatinib ditosylate)(ErbB-2與 EGFR雙重酪胺酸 激酶小分子抑制劑,亦稱為GW572016);及以上任一者之 醫藥學上可接受之鹽、酸或衍生物。 「生長抑制劑」當在本文中使用時係指活體外或活體内 抑制細胞生長之化合物或組合物。因此,生長抑制劑可為 顯著減少S期中之細胞百分比者。生長抑制劑之實例包括 阻斷細胞週期進程(處於S期以外之位置)之藥劑,諸如誘 發G1停滯及Μ期停滯之藥劑。典型Μ期阻斷劑包括長春花 屬(例如,長春新驗及長春驗)、紫杉烧(taxane)及拓撲異構 酶II型抑制劑,諸如阿黴素、表柔比星、道諾黴素、依託 泊苷及博萊黴素。使G1停滞之藥劑亦外溢引起S期停滯, 例如DNA烧化劑,諸如他莫西芬、潑尼松(prednisone)、 氮烯咪胺、氮芥、順鉑、曱胺喋呤、5-氟尿啶及ara-C。其 他資訊可見於The Molecular Basis of Cancer,Mendelsohn 及Israel編,第1章,Murakami等人之標題為[Cell cycle regulation, oncogenes, and antineoplastic drugs](WB Saunders: Philadelphia, 1995),尤其第13頁中。紫杉烷(太平洋紫杉醇 142552.doc 201011047 及多烯紫杉醇)均為源自紫杉之抗癌藥物。源自歐洲紫杉 之歐洲紫杉醇(TAXOTERE®,Rhone-Poulenc Rorer)為太平 洋紫杉醇(TAXOL®,Bristol-Myers Squibb)之半合成類似 物。太平洋紫杉醇及多烯紫杉醇促進由微管蛋白二聚體組 裝微管且藉由防止解聚合來穩定微管,此導致細胞中之有 絲分裂受到抑制。(formestanie), fadrozole, RIVISOR® vorozole, FEMARA® (letrozole) and ARIMIDEX® anastrozole. In addition, this definition of chemotherapeutic agent includes: bisphosphonates such as clodronate (eg, BONEFOS® or OSTAC®), DIDROCAL® etidronate, NE-58095, ZOMETA® Zoledronic acid/zoledronate, FOSAMAX® alendronate, AREDIA® pamidronate, SKELID® tiludronate or ACTONEL® risedronate Salt (risedronate); and troxacitabine 142552.doc -65- 201011047 (troxacitabine) (l,3-dioxolan nucleoside sulphonic biting analog); antisense oligonucleotides, especially inhibitory genes involved Antisense nucleotides expressed in signaling pathways in abnormal cell proliferation, such as PKC-α, Raf, H-Ras, and epidermal growth factor receptor (EGF-R); vaccines such as THERATOPE® vaccines and genes Therapeutic vaccines such as ALLOVECTIN® vaccine, LEUVECTIN® vaccine and VAXID® vaccine; LURTOTECAN® topoisomerase 1 inhibitor; ABARELIX® rmRH; lapatinib ditosylate (ErbB-2 and EGFR) Tyrosine kinase small molecule inhibitor, also known as GW572016); Any above one of the acceptable pharmaceutically acceptable salts, acids or derivatives thereof. "Growth inhibitor" as used herein refers to a compound or composition that inhibits cell growth in vitro or in vivo. Therefore, the growth inhibitor can be a person who significantly reduces the percentage of cells in the S phase. Examples of growth inhibitors include agents that block cell cycle progression (outside the S phase), such as agents that induce G1 arrest and stagnation. Typical sputum blockers include vinca (eg, Changchun and Changchun), taxane, and topoisomerase type II inhibitors, such as doxorubicin, epirubicin, and Donovan , etoposide and bleomycin. Suppressing agents that cause G1 stagnation also cause S-phase arrest, such as DNA burning agents such as tamoxifen, prednisone, imipenem, nitrogen mustard, cisplatin, amidoxime, 5-fluorourine Pyridine and ara-C. Additional information can be found in The Molecular Basis of Cancer, edited by Mendelsohn and Israel, Chapter 1, Murakami et al., entitled [Cell cycle regulation, oncogenes, and antineoplastic drugs] (WB Saunders: Philadelphia, 1995), especially on page 13. . Taxanes (pacific paclitaxel 142552.doc 201011047 and docetaxel) are anticancer drugs derived from yew. TAXOTERE® (Rhone-Poulenc Rorer) from European yew is a semi-synthetic analog of TAXOL® (Bristol-Myers Squibb). Pacific paclitaxel and docetaxel promote the assembly of microtubules from tubulin dimers and stabilize microtubules by preventing depolymerization, which results in inhibition of mitosis in cells.
如本文所用之「抗癌療法」係指減少或抑制個體之癌症 的治療。抗癌療法之實例包括細胞毒性放射線療法以及向 個體投與治療有效量之細胞毒性劑、化療劑、生長抑制 劑、癌症疫苗、血管生成抑制劑、前藥、細胞激素、細胞 激素拮抗劑、皮質類固醇、免疫抑制劑、止吐劑、抗體或 抗體片段或止痛劑。 如本申請案中所用之術語「前藥」係指醫藥學活性物質 之前驅體或衍生物形式,其與母體藥物相比對腫瘤細胞之 細胞毒性較低,且能夠經酶促活化或轉化為活性較高之母 體形式。參見例如,Wilman,[Prodrugs in Cancer Chemotherapy] Biochemical Society Transactions, 14,第 375-382 頁,615th Meeting Belfast (1986)及 Stella等人, [Prodrugs: A Chemical Approach to Targeted Drug Delivery] Directed Drug Delivery, Borchardt 等人(編),第 247-267 頁,Humana Press (1985)。前藥包括(但不限於):含有攝 酸鹽之前藥、含有硫代磷酸鹽之前藥、含有硫酸鹽之前 藥、含有肽之前藥、經D-胺基酸修飾之前藥、糖基化前 藥、含有β·内醯胺之前藥、含有視情況經取代之苯氧基乙 142552.doc -67- 201011047 醯胺之前藥或含有視情況經取代之苯乙醯胺之前藥、可轉 化成活性更強之細胞毒性游離藥物之5-氟胞嘧啶及其他5-氟尿苷前藥。可衍生成適用於本發明之前藥形式之細胞毒 性藥物的實例包括(但不限於)上文所述之彼等化療劑。 術語「細胞激素」為由一個細胞群體釋放之作為細胞内 介體作用於另一細胞的蛋白之通用術語。該等細胞激素之 實例為淋巴因子、單核球激素及傳統多肽激素。細胞激素 包括生長激素,諸如人類生長激素(HGH)、N-甲硫胺醯基 人類生長激素及牛生長激素;副甲狀腺激素;曱狀腺素;參參 膦島素;胰島素原;鬆弛素;鬆弛素原;醣蛋白激素,諸 如促濾泡激素(FSH)、促甲狀腺激素(TSH)及促黃體激素 (LH) ’表皮生長因子(EGF);肝生長因子;纖維母細胞生 . 長因子(FGF) ·,促乳素;胎盤生乳素;腫瘤壞死因子《及 腫瘤壞死因子_β ;苗勒氏抑制物質(mullerian_inhibiting substance);小鼠促性腺激素相關肽;抑制素;活化素; 血·官内皮生長因子;整合素;血小板生成素(τρ〇);神經 生長因子,諸如NGF_a ;血小板生長因子;轉化生長因子 (TGF) ’諸如TGF_a及TGF p ;類胰島素生長因子心及類胰 島素生長因子-II ;紅細胞生成素(Ep〇);骨誘導因子;干 擾素,諸如干擾素_a、干擾素及干擾素_γ ;群落刺激因 子(CSF) ’諸如巨噬細胞_CSF(M_CSF);粒細胞-巨噬細胞· CSF(GM-CSF);及粒細胞-CSF(G-CSF);介白素(IL),諸 如1L_1、IL_la、IL-2、IL-3、IL-4、IL-5、IL-6、IL-7、 IL-8、IL-9、iL-i〇、IL_U、IL_12 ;腫瘤壞死因子,諸如 142552.doc -68- 201011047 TNF-α或TNF-β ;及其它包括LIF及套組配位體(KL)之多肽 因子。如本文中所用之術語細胞激素包括來自天然來源或 來自重組細胞培養物之蛋白及天然序列細胞激素之生物活 性等效物。 「細胞激素拮抗劑」意謂部分或完全阻斷、抑制或中和 至少一個細胞激素之生物活性的分子。例如,細胞激素拮 抗劑可藉由抑制細胞激素表現及/或分泌或藉由結合至細 胞激素或細胞激素受體來抑制細胞激素活性。細胞激素拮 抗劑包括結合至細胞激素或細胞激素受體之抗體、合成或 天然序列肽、免疫黏附素及小分子拮抗劑。細胞激素拮抗 劑視情況與細胞毒性劑結合或稠合。例示性TNF拮抗劑為 依那西普(etanercept)(ENBREL®)、 英利昔單抗 (infliximab)(REMICADE®)及阿達木單抗(adalimumab) (HUMIRAtm)。As used herein, "anti-cancer therapy" refers to the treatment of reducing or inhibiting cancer in an individual. Examples of anti-cancer therapies include cytotoxic radiation therapy and administration to a subject a therapeutically effective amount of a cytotoxic agent, a chemotherapeutic agent, a growth inhibitor, a cancer vaccine, an angiogenesis inhibitor, a prodrug, a cytokine, a cytokine antagonist, a cortex Steroids, immunosuppressants, antiemetics, antibodies or antibody fragments or analgesics. The term "prodrug" as used in this application refers to a precursor or derivative form of a pharmaceutically active substance which is less cytotoxic to tumor cells than the parent drug and which can be enzymatically activated or converted to A parent form that is more active. See, for example, Wilman, [Prodrugs in Cancer Chemotherapy] Biochemical Society Transactions, 14, pp. 375-382, 615th Meeting Belfast (1986) and Stella et al, [Prodrugs: A Chemical Approach to Targeted Drug Delivery] Directed Drug Delivery, Borchardt Et al. (eds.), pp. 247-267, Humana Press (1985). Prodrugs include, but are not limited to, prodrug-containing prodrugs, thiophosphate-containing prodrugs, prosulfate-containing prodrugs, peptide-containing prodrugs, D-amino acid-modified prodrugs, glycosylation prodrugs Pre-drug containing β·indoleamine, containing optionally substituted phenoxyethyl 142552.doc -67- 201011047 proguanamine prodrug or pre-drug containing phenethylamine as appropriate, can be converted into activity Strong cytotoxic free drug 5-fluorocytosine and other 5-fluorouridine prodrugs. Examples of cytotoxic drugs which may be derivatized into a prodrug form suitable for use in the present invention include, but are not limited to, the chemotherapeutic agents described above. The term "cytokine" is a generic term for a protein released by a cell population that acts as an intracellular mediator on another cell. Examples of such cytokines are lymphokines, mononuclear hormones and traditional polypeptide hormones. Cytokines include growth hormones such as human growth hormone (HGH), N-methionine-based human growth hormone and bovine growth hormone; parathyroid hormone; scorpion stimulating hormone; ginseng phosphatase; proinsulin; relaxin; Relaxin; glycoprotein hormones such as follicle stimulating hormone (FSH), thyroid stimulating hormone (TSH) and luteinizing hormone (LH) 'epidermal growth factor (EGF); liver growth factor; fibroblast growth. FGF) ·, prolactin; placental lactogen; tumor necrosis factor "and tumor necrosis factor_β; mullerian_inhibiting substance; mouse gonadotropin-related peptide; inhibin; activin; Endothelial growth factor; integrin; thrombopoietin (τρ〇); nerve growth factor, such as NGF_a; platelet growth factor; transforming growth factor (TGF) such as TGF_a and TGF p; insulin-like growth factor heart and insulin-like growth factor- II; erythropoietin (Ep〇); osteoinductive factors; interferons such as interferon-a, interferon and interferon_γ; community stimulating factor (CSF) 'such as macrophage_CSF ( M_CSF); granulocyte-macrophage·CSF (GM-CSF); and granulocyte-CSF (G-CSF); interleukin (IL), such as 1L_1, IL_la, IL-2, IL-3, IL- 4. IL-5, IL-6, IL-7, IL-8, IL-9, iL-i〇, IL_U, IL_12; tumor necrosis factor, such as 142552.doc -68- 201011047 TNF-α or TNF-β And other polypeptide factors including LIF and kit ligands (KL). The term cytokine as used herein includes a biologically active equivalent of a protein derived from a natural source or from a recombinant cell culture and a native sequence cytokine. "Cyto Hormone Antagonist" means a molecule that partially or completely blocks, inhibits or neutralizes the biological activity of at least one cytokine. For example, a cytokine antagonist can inhibit cytokine activity by inhibiting cytokine expression and/or secretion or by binding to a cytokine or cytokine receptor. Cytokine antagonists include antibodies that bind to cytokines or cytokine receptors, synthetic or native sequence peptides, immunoadhesins, and small molecule antagonists. The cytokine antagonist is bound or fused to the cytotoxic agent as appropriate. Exemplary TNF antagonists are etanercept (ENBREL®), infliximab (REMICADE®), and adalimumab (HUMIRAtm).
如本文所用之術語「免疫抑制劑」係指起抑止或掩蔽經 治療個體之免疫系統之作用的物質。此可包括抑止細胞因 子產生,下調或抑止自體抗原表現或掩蔽MHC抗原之物 質。免疫抑制劑之實例包括2-胺基-6-芳基-5-經取代之嘧 啶(參見美國專利第4,665,077號);黴酚酸嗎啉乙酯 (mycophenolate mofetil),諸如 CELLCEPT® ;硫 11坐嗓吟 (azathioprine)(IMURAN®,AZASAN®/6-酼基嘌呤;溴隱 亭(bromocryptine);達那 °^(danazol);胺苯瑕(dapsone); 戊二醛(其遮蔽MHC抗原,如美國專利第4,120,649號中所 述);針對MHC抗原及MHC片段之抗遺傳型抗體;環孢素 142552.doc -69- 201011047 A(cyclosporin A);類固醇,諸如皮質類固醇及糖皮質類固 醇,例如潑尼松、潑尼松龍(prednisolone)諸如 PEDIAPRED®(潑尼松龍磷酸鈉)或ORAPRED®(潑尼松龍 磷酸鈉口服溶液)、甲基潑尼松龍及地塞米松 (dexamethasone); 曱胺嗓吟(經 口或經皮下) (RHEUMATREX® , TREXALL™);羥基氣奎 (hydroxycloroquine)/ 氯奎(chloroquine) •,柳氮確胺 °比 0定 (sulfasalazine);來氟米特(leflunomide);細胞激素或細胞 激素受體拮抗劑包括抗干擾素-γ、抗干擾素-β或抗干擾素-α抗體、抗腫瘤壞死因子-α抗體(英利昔單抗或阿達木單 抗)、抗TNFa免疫黏附素(ENBREL®,依那西普)、抗腫瘤 壞死因子-β抗體、抗介白素-2抗體及抗IL-2受體抗體;抗 LFA-1抗體,包括抗CDlla及抗CD18抗體;抗L3T4抗體; 異源抗淋巴細胞球蛋白;多株或pan-T抗體或單株抗CD3或 抗CD4/CD4a抗體;含有LFA-3結合域之可溶性肽(WO 1990/08187,於1990年7月26日公開);鏈球菌激酶;TGF-β;鏈球菌去氧核糖核酸酶;來自宿主之RNA或DNA ; FK506 ; RS-61443 ;去氧斯匹胍素(deoxyspergualin);雷 帕黴素(rapamycin) ; T-細胞受體(Cohen等人,美國專利第 5,114,721 號);T-細胞受體片段(Offner 等人8<^611〇6,251·· 430-432 (1991) ; WO 1990/11294 ; Ianeway, Nature, 341: 482 (1989);及 WO 1991/01133) ; T 細胞受體抗體(EP 340,109),諸如 T10B9 ;環磷醯胺(CYTOXAN®);胺苯 颯;青黴胺(CUPRIMINE®);漿細胞交換;或靜脈内免疫 142552.doc -70- 201011047 球蛋白(IVIG)。該等免疫抑制劑可單獨使用或彼此組合使 用,尤其為類固醇與另一免疫抑制劑之組合或該等組合之 後接維持劑量之非類固醇藥劑以減少對類固醇之需要》 「止痛劑」係指用以抑制或抑止個體之疼痛的藥物。例 示性止痛劑包括非類固醇消炎藥物(NSAID),包括布洛芬 (ibuprofen,MOTRIN®)、萘普生(naproxen,NAPROSYN®)、 乙醯基水揚酸、β朵美辛(indomethacin)、舒林酸 (sulindac)及托美汀(tolmetin)包括其鹽及衍生物、以及各 •❹ 種其他藥物用於減少可能發生之穿刺疼痛包括抗驚厥藥 (加巴嘴丁(gabapentin)、苯妥英(phenyloin)、卡馬西平 (carbamazepine))或三環抗抑鬱劑。特異性實例包括乙醯胺 苯酚(acetaminophen)、阿司匹靈(aspirin)、阿米曲替林 . (amitriptyline,ELAVIL®)、卡馬西平(TEGRETOL®)、苯The term "immunosuppressive agent" as used herein refers to a substance that acts to inhibit or mask the immune system of a treated individual. This may include inhibiting cytokine production, downregulating or inhibiting the expression of the MHC antigen by the autoantigen. Examples of immunosuppressive agents include 2-amino-6-aryl-5-substituted pyrimidines (see U.S. Patent No. 4,665,077); mycophenolate mofetil, such as CELLCEPT®; sulfur 11 sitting Azathioprine (IMURAN®, AZASAN®/6-mercaptopurine; bromocryptine; danazol; dapsone; glutaraldehyde (which masks MHC antigens, eg U.S. Patent No. 4,120,649; anti-genetic antibodies against MHC antigens and MHC fragments; cyclosporine 142552.doc-69-201011047 A (cyclosporin A); steroids such as corticosteroids and glucocorticosteroids, For example, prednisone, prednisolone such as PEDIAPRED® (prednisolone sodium phosphate) or ORAPRED® (prednisolone sodium phosphate oral solution), methylprednisolone and dexamethasone (dexamethasone) Amidoxime (oral or subcutaneous) (RHEUMATREX®, TREXALLTM); hydroxycloroquine / chloroquine • sulfasalazine; leflunomide (leflunomide); cytokine or cytokine receptor antagonist package Including anti-interferon-γ, anti-interferon-β or anti-interferon-α antibody, anti-tumor necrosis factor-α antibody (infliximab or adalimumab), anti-TNFa immunoadhesin (ENBREL®, ena Sigma, anti-TNF-β antibody, anti-interleukin-2 antibody and anti-IL-2 receptor antibody; anti-LFA-1 antibody, including anti-CD11a and anti-CD18 antibody; anti-L3T4 antibody; heterologous anti-lymph Cytoglobulin; multi-strain or pan-T antibody or monoclonal anti-CD3 or anti-CD4/CD4a antibody; soluble peptide containing LFA-3 binding domain (WO 1990/08187, published July 26, 1990); Streptococcus Kinase; TGF-β; Streptococcus deoxyribonuclease; RNA or DNA from the host; FK506; RS-61443; deoxyspergualin; rapamycin; T-cell receptor (Cohen et al., U.S. Patent No. 5,114,721); T-cell receptor fragment (Offner et al. 8 <^611, 6, 251, 430-432 (1991); WO 1990/11294; Ianeway, Nature, 341: 482 (1989); and WO 1991/01133); T cell receptor antibody (EP 340, 109), such as T10B9; cyclophosphamide (CYTOXAN®); amine benzoquinone; Amine (CUPRIMINE®); switched plasma cells; or immune 142552.doc -70- 201011047 intravenous immunoglobulin (IVIG). The immunosuppressive agents may be used alone or in combination with each other, especially in combination with a steroid and another immunosuppressive agent or in combination with a maintenance dose of a non-steroidal agent to reduce the need for steroids. "Analgesic" means A drug that inhibits or suppresses pain in an individual. Exemplary analgesics include non-steroidal anti-inflammatory drugs (NSAIDs), including ibuprofen (MOTRIN®), naproxen (NAPROSYN®), acetylated salicylic acid, indomethacin, and sedatives. Sulmedac and tolmetin include salts and derivatives, as well as other drugs used to reduce possible puncture pain including anticonvulsants (gabapentin, phenyloin) ), carbamazepine or tricyclic antidepressants. Specific examples include acetaminophen, aspirin, amitriptyline (amitriptyline, ELAVIL®), carbamazepine (TEGRETOL®), benzene
妥英鈉(phenyltoin,DILANTIN®)、加巴噴丁(NEURONTIN®)、 (E)-N-香草基-8-曱基-6-神經醯胺(CAPSAICIN®)或神經阻 斷劑。 「皮質類固醇」係指模擬或增大天然存在之皮質類固醇 之作用的具有類固醇之一般化學結構之若干合成或天然存 在之物質中的任一者。合成皮質類固醇之實例包括潑尼 松、潑尼松龍(包括甲潑尼龍(methylprednisolone))、地塞 米松、曲安西龍(triamcinolone)及倍他米松(betamethasone)'。 如本文所用之「癌症疫苗」為刺激個體體内針對癌症之 免疫反應的組合物。癌症疫苗一般由可與個體同體(來自 自身)或同種異體(來自其他)之癌症相關物質或細胞(抗原) 142552.doc • 71 · 201011047 之來源以及其他組分(例如佐劑)組成以進一步刺激及增強 針對抗原之免疫反應。癌症疫苗理想地導致刺激個體之免 疫系統以產生針對一種或若干種特異性抗原之抗體’及/ 或以產生殺傷τ細胞以攻擊具有彼等抗原之癌細胞。 如本文所用之「細胞毒性放射線療法」係指抑制或防 止細胞功能及/或引起細胞破壞之輻射療法。輻射療法可 包括(例如)外部束照射或具有放射性標記之藥劑(諸如抗 體)的療法。該術語意欲包括使用放射性同位素(例如’ At211、I131、I125、Y90、Re186、Re188、Sm153、Bi212、 Ra223、P32及Lu之放射性同位素)。 「止吐劑」為減少或防止個體噁心之化合物。止吐劑化 合物包括(例如)神經激肽-1受體拮抗劑、5HT3受體拮抗劑 (諸如昂丹司瓊(ondansetron)、格拉司壤(granisetron)、托 烧司壤(tropisetron)及紮替司瓊(zatisetron))、GABAB 受體 促效劑(諸如氣苯胺丁酸(baclofen))、皮質類固醇(諸如地 塞米松、KENALOG®、ARISTOCORT® 或 NASALIDE®)、 抗多巴胺能藥、°非嘆嗪(例如普魯氣唤(prochlorperazine)、 氟奮乃靜(fluphenazine)、硫利達嗪(thioridazine)及美索達 口秦(mesoridazine))、屈大麻盼(dronabinol)、曱氧氯普胺 (metroclopramide)、多潘立酮(domperidone)、氣 0底咬醇 (haloperidol)、賽克利 °秦(cyclizine)、勞拉西泮 (lorazepam)、丙氣拉 °秦(prochlorperazine)及左美丙0秦 (levomepromazine) 〇 「個體」為脊椎動物,較佳為哺乳動物,更佳為人類。 142552.doc -72- 201011047 哺乳動物包括(但不限於)農畜動物(諸如奶牛)、運動型動 物、寵物(諸如猶、狗及馬)、靈長類動物、小鼠及大鼠。 除非另有說明,否則實例中所提及之市售試劑係根據製 造者說明來使用。在以下實例中及整個說明書中由ATCC 寄存編號識別之彼等細胞的來源為the American Type Culture Collection, Manassas, VA。除非另外說明,否則本 發明使用重組DNA技術之標準程序,諸如上文及以下課本 中所述之彼等程序:Sambrook等人,上文;Ausubel等 人,Current Protocols in Molecular Biology(Green Publishing Associates及 Wiley Interscience,N.Y” 1989); Innis 等人, PCR Protocols: A Guide to Methods and Applications (Academic Press, Inc.: N.Y.,1990) ; Harlow 等人,Phenyltoin (DILANTIN®), gabapentin (NEURONTIN®), (E)-N-vanillyl-8-mercapto-6-neuramide (CAPSAICIN®) or a nerve blocker. "Corticosteroid" refers to any of a number of synthetic or naturally occurring substances having the general chemical structure of a steroid that mimics or augments the action of a naturally occurring corticosteroid. Examples of synthetic corticosteroids include prednisone, prednisolone (including methylprednisolone), dexamethasone, triamcinolone, and betamethasone. A "cancer vaccine" as used herein is a composition that stimulates an immune response against cancer in an individual. Cancer vaccines are generally composed of cancer-related substances or cells (antigens) that can be homologous (from themselves) or allogeneic (from others) and other components (such as adjuvants) to further Stimulates and enhances the immune response against the antigen. Cancer vaccines desirably result in stimulating an immune system of an individual to produce antibodies against one or several specific antigens' and/or to produce killer tau cells to attack cancer cells having their antigens. As used herein, "cytotoxic radiation therapy" refers to radiation therapy that inhibits or prevents cellular function and/or causes cell destruction. Radiation therapy can include, for example, external beam irradiation or therapy with radiolabeled agents such as antibodies. The term is intended to include the use of radioisotopes (e.g., radioactive isotopes of 'At211, I131, I125, Y90, Re186, Re188, Sm153, Bi212, Ra223, P32, and Lu). An "antiemetic" is a compound that reduces or prevents nausea in an individual. Antiemetic compounds include, for example, neurokinin-1 receptor antagonists, 5HT3 receptor antagonists (such as ondansetron, granisetron, tropisetron, and zafi Zhaisetron), GABAB receptor agonist (such as baclofen), corticosteroids (such as dexamethasone, KENALOG®, ARISTOCORT® or NASALIDE®), anti-dopaminergic drugs, Pyrazines (eg, prochlorperazine, fluphenazine, thioridazine, and mesoridazine), dronabinol, metroclopramide ), domperidone, haloperidol, cyclizine, lorazepam, prochlorperazine, and levomepromazine The "individual" is a vertebrate, preferably a mammal, and more preferably a human. 142552.doc -72- 201011047 Mammals include, but are not limited to, farm animals (such as cows), sports animals, pets (such as juveniles, dogs and horses), primates, mice, and rats. Commercially available reagents mentioned in the examples are used according to the manufacturer's instructions unless otherwise stated. The sources of these cells identified by the ATCC registration number in the examples below and throughout the specification are the American Type Culture Collection, Manassas, VA. Unless otherwise indicated, the present invention uses standard procedures for recombinant DNA techniques, such as those described above and in the following textbooks: Sambrook et al., supra; Ausubel et al., Current Protocols in Molecular Biology (Green Publishing Associates and Wiley Interscience, NY" 1989); Innis et al., PCR Protocols: A Guide to Methods and Applications (Academic Press, Inc.: NY, 1990); Harlow et al.
Antibodies: A Laboratory Manual(Cold Spring Harbor Press: Cold Spring Harbor, 1988) ; Gait, Oligonucleotide Synthesis(IRL Press: Oxford, 1984) ; Freshney, Animal Cell Culture, 1987 ; Coligan等人,Current Protocols in Immunology, 1991。 貫穿本說明書及申請專利範圍,詞語「包含」應理解為 暗示包括所列整數或整數群,但不排除任何其他整數或整 數群。 II.載體、宿主細胞及重組方法 為重組產生本發明之抗體,分離編碼該抗體之核酸且將 其插入可複製之載體中以用於進一步選殖(DNA之擴增)或 表現。編碼抗體之DNA經容易地分離且使用習知程序(例 如藉由使用能夠與編碼抗體之重鏈及輕鏈之基因特異性結 142552.doc -73- 201011047 合的寡核苷酸探針)定序。許多載體為可用的。載體之選 擇部分地視待使用之宿主細胞而定。較佳宿主細胞通常具 有原核生物或真核生物(通常為哺乳動物)來源。應瞭解, 為達成此目的可使用任何同型之怪定區,包括IgG、igM、 IgA、IgD及IgE怪定區’且該等丨亙定區可自任何人類或動 物物種獲得。 a·使用原核宿主細胞產生抗艘 i. 載體建構 可使用標準重組技術獲得編碼本發明抗體之多肽組分的 聚核苷酸序列。可自產生抗體之細胞(諸如融合瘤細胞)中 分離所需聚核音酸序列且進行定序。或者,可使用核普酸 合成儀或PCR技術合成聚核苷酸。在獲得編碼多肽之序列 後’將其插入能夠在原核宿主中複製且表現異源聚核苷酸 之重組載體中。可獲得且為此項技術中所知之多種載體可 用於達成本發明之目的。適當載體之選擇將主要視待插入 載體中之核酸的大小及待經載體轉型之特定宿主細胞而 定。視載體功能(擴增或表現異源聚核苷酸或兩者)及載體 與其居住之特定宿主細胞的相容性而定,各載體含有各種 組分。載體組分通常包括(但不限於):複製起點、選擇標 記基因、啟動子、核糖體結合位點(RBS)、信號序列、異 源核酸插入及轉錄終止序列。 一般而言’含有源自與宿主細胞相容之物種之複製子及 控制序列的質體載體與該等宿主結合使用。載體一般攜帶 複製位點以及能夠在轉型細胞中提供表型選擇之標記序 142552.doc -74· 201011047 列。舉例而言,一般使用pBR322( —種源自大腸桿菌(五 co/z·)物種之質體)使大腸桿菌轉型。pBR322含有編碼胺节 西林(ampicillin ’ Amp)及四環素(tetracycline,Tet)抗性之 基因且因此提供用於識別轉型細胞之容易方式。 PBR322、其衍生物或其他微生物質體或噬菌體亦可含有 或經修飾而含有可由微生物生物體用於表現内源蛋白之啟 動子。Carter等人之美國專利第5,648,237號中詳細描述用 於表現特定抗體之pBR322衍生物的實例。Antibodies: A Laboratory Manual (Cold Spring Harbor Press: Cold Spring Harbor, 1988); Gait, Oligonucleotide Synthesis (IRL Press: Oxford, 1984); Freshney, Animal Cell Culture, 1987; Coligan et al, Current Protocols in Immunology, 1991. Throughout this specification and the scope of the claims, the word "comprising" is to be understood as meaning to include the enumerated integer or integer group, but does not exclude any other integer or integer group. II. Vectors, Host Cells, and Recombinant Methods For the recombinant production of an antibody of the present invention, the nucleic acid encoding the antibody is isolated and inserted into a replicable vector for further selection (amplification of DNA) or expression. The DNA encoding the antibody is readily isolated and using conventional procedures (e.g., by using an oligonucleotide probe capable of binding to a gene-specific knot 142552.doc-73-201011047 encoding the heavy and light chains of the antibody) sequence. Many vectors are available. The choice of vector will depend, in part, on the host cell to be used. Preferred host cells typically have a source of prokaryote or eukaryote (usually a mammal). It will be appreciated that any homomorphic region, including IgG, igM, IgA, IgD and IgE moieties' can be used for this purpose and that such definitive regions can be obtained from any human or animal species. a. Generation of anti-occupation using prokaryotic host cells i. Vector construction A polynucleotide sequence encoding a polypeptide component of an antibody of the invention can be obtained using standard recombinant techniques. The desired polynucleic acid sequence can be isolated from the antibody-producing cells (such as fusion tumor cells) and sequenced. Alternatively, the polynucleotide can be synthesized using a nucleotide acid synthesizer or PCR technique. After obtaining the sequence encoding the polypeptide, it is inserted into a recombinant vector capable of replicating in a prokaryotic host and exhibiting a heterologous polynucleotide. A wide variety of vectors are available and known in the art for the purposes of the present invention. The choice of a suitable vector will depend primarily on the size of the nucleic acid to be inserted into the vector and the particular host cell to be transformed by the vector. Depending on the function of the vector (amplification or expression of the heterologous polynucleotide or both) and the compatibility of the vector with the particular host cell in which it resides, each vector contains various components. Vector components typically include, but are not limited to, an origin of replication, a selectable marker gene, a promoter, a ribosome binding site (RBS), a signal sequence, a heterologous nucleic acid insertion, and a transcription termination sequence. Generally, plastid vectors containing replicons and control sequences derived from species compatible with the host cell are used in conjunction with such hosts. Vectors typically carry a replication site and a marker sequence that provides phenotypic selection in transformed cells 142552.doc -74· 201011047 column. For example, pBR322 (a plastid derived from an E. coli (five co/z) species) is typically used to transform E. coli. pBR322 contains genes encoding ampicillin 'Amp and tetracycline (Tet) resistance and thus provides an easy way to identify transformed cells. PBR322, its derivatives or other microbial plastids or phages may also contain or be modified to contain promoters which can be used by microorganism organisms to express endogenous proteins. An example of a pBR322 derivative for use in expressing a particular antibody is described in detail in U.S. Patent No. 5,648,237.
此外,含有與宿主微生物相容之複製子及控制序列的噬 菌體載體可與該等宿主結合用作轉型载體。舉例而言,可 利用諸如XGEM.TM_-11之噬菌體製備可用於轉型諸如大腸 桿菌LE392之易感宿主細胞的重組載體。 本發明之表現載體可包含兩種或兩種以上編碼各多肽組 分之啟動子-順反子對。啟動子為位於調節其表現之順反 子上游(5’)的未經轉譯之調控序列。原核啟動子一般分為 兩類:誘導型及組成型。誘導型啟動子為在其對培養條件 之改變(例如養分存在與否或溫度改變)作出回應之控制下 起始增加量之順反子轉錄的啟動子。 熟知由多種潛在宿主細胞識別之大量啟動子。可藉由經 限制酶消化將所選啟動子自源舰移除且將所分離之啟動 子序列插入本發明之載體中而使該啟動子以可操作方式連 接至編碼輕鏈或重鏈之順反子舰。天然:啟動子序列與多 ,異源啟動子均可用以指導標減因之擴増及/或表現。 -些實施財,湘㈣啟動子,此仙為如與天然標 142552.doc -75- 201011047 乾多肽啟料相比,異源啟動子通常允許經表現之標無基 因較高轉錄且產率較高。 適用於原核宿主之啟動子包括PhoA啟動子、卜半乳糖酶 及乳糖啟動子系統、色胺酸(trp)啟動子系統及雜交啟動子 (諸如tac或trc啟動子)。然而,在細菌中具有功能性之其他 啟動子(諸如其他已知之細菌或噬菌體啟動子)亦為合適 的。其核苷酸序列已公開,藉此使得熟習此項技術者能夠 使用連接子或接頭將其與編碼標乾輕鏈及重鏈之順反子接 合(Siebenlist等人,(1980) Cell 20: 269)以提供任何所需之 限制位點。 在本發明之一態樣中,重組載體内之每一順反子均包含 引導經表現之多肽跨膜移位的分泌信號序列組分。一般而 吕,彳5號序列可為載體之組分,或其可為插入載體中之標 靶多肽DNA的一部分。出於本發明之目的所選擇之信號序 列應為由宿主細胞識別且加工(亦即,由信號肽酶裂解)之 #號序列。對於不識別且加工異源多肽之天然信號序列的 原核宿主細胞而言’使信號序列經(例如)選自由以下各序 列組成之群之原核彳§號序列取代:驗性麟酸酶、青黴素 酶、ϊρρ或熱穩定性腸毒素II(STII)前導序列、LamB、 PhoE、PelB、OmpA及MBP。在本發明之一項實施例中, 用於表現系統之兩種順反子中之信號序列為STII信號序列 或其變異體。 在另一態樣中,本發明之免疫球蛋白的產生可發生在宿 主細胞之細胞質中,且因此無需各順反子内均存在分泌信 142552.doc •76- 201011047 號序列。就此而言,免疫球蛋白之輕鍵及重鏈均在細胞質 内表現、摺疊且組裝形成功能性免疫球蛋白。某些宿主菌 株(例如大腸桿菌trxB-菌株)提供有利於雙硫鍵形成之細胞 質條件,藉此允許適當摺疊及組裝經表現之蛋白次單元 (Proba及 Pluckthun,Gene, 159:203 (1995)) 〇 適合於表現本發明抗體之原核宿主細胞包括古細菌 (Archaebacteria)及真細菌(Eubacteria),諸如革蘭氏陰性 (Gram-negative)或革蘭氏陽性生物體。適用細菌之實例包 括埃希氏菌(Escherichia)(例如大腸桿菌)、芽孢桿菌 (Bacilli)(例如枯草芽孢桿菌(凡、腸捍菌 (Enterobacteria)、假單胞菌(Pseudomonas)物種(例如綠膿桿 • 菌(P. aeruginosa))、鼠傷寒沙門菌(Salmonella typhimurium)、 . 黏質沙雷菌(Serrai/a warcescaws)、 克雷伯氏菌 (Klebsiella)、變形菌(Proteus)、志贺菌(Shigella)、根瘤菌 (Rhizobia)、透明顏菌(Vitreoscilla)或副球菌(Paracoccus)。 在一項實施例中,使用革蘭氏陰性細胞。在一項實施例 中,大腸桿菌細胞用作本發明之宿主。大腸桿菌菌株之實 例包括菌株 W3 11 〇(Bachmann, Cellular and Molecular Biology,第 2 卷(Washington, D.C.: American Society for Microbiology,1987),第 1190-1219 頁;ATCC 寄存編號 27,325)及其衍生物,包括具有基因型W3110 AfhuA (△tonA) ptr3 lac Iq lacL8 △ompTA(nmpc-fepE) degP41 kanR之菌株33D3(美國專利第5,639,635號)。其他菌株及其 衍生物(諸如大腸桿菌294(ATCC 31,446)、大腸桿菌B、大 142552.doc -77- 201011047 腸桿菌 m76(ATCC 31,537)及大腸桿菌 rv3〇8(atcc 3U608))亦為合適的,實例係出於說明而非限制之目 具有Μ基因型之㈣以上提及之細菌的衍生物 之方法在此項技術中已知且描述於(例如)Bass等人, Proteins,8:309-3 14 (199〇)中。-般需要考慮複製子在細菌 細胞中之可複製性來選擇適當細菌。舉例而言,當使用熟 知之質體(諸如 PBR322、pBR325、pACYci77 或 pKN41〇) 提供複製子時,大腸桿菌、沙雷氏菌或沙門氏菌物種可適 當地用作宿主。宿主細胞一般應分泌最小量之蛋白水解❿· 酶,且可視需要將額外之蛋白酶抑制劑併入細胞培養物 中。 •抗體產生 用上述表現載體使宿主細胞轉型,且將其培養於適當時 經修飾之習知培養基中以誘導啟動子、選擇轉型物或擴增 -編碼所需序列之基因。 轉型意謂將DNA引入原核宿主中,以便DNA可作為染色 體外要素或由染色體成份複製。視所用宿主細胞而定,使0 用適合於該等細胞之標準技術進行轉型。採用氣化鈣進行 約處理通常用於含有實質性細胞壁障壁之細菌細胞。另一 種轉型方法採用聚乙二醇/DMS〇。所使用之另—技術為電 穿孔法。 用以產生本發明之多肽的原核細胞生長於此項技術中已 知且適合於培養所選宿主細胞之培養基中。合適培養基之 實例包括盧氏培養液(Luria broth,LB)加必需養份補充 142552.doc • 78 · 201011047 物°在—些實施例中’培養基亦含有基於表現载體之構築 而選擇之選擇劑’以選擇性地允許含有表現載體之原核細 胞生長。舉例而言’將胺苄西林添加至培養基中以使表現 胺苄西林抗性基因之細胞生長。 亦可包括適當濃度之單獨或以與另一種補充物或培養基 (諸如複合氮源)之混合物形式引入的除碳、氮及無機磷酸 鹽源以外之任何必需補充物。培養基視情況可含有一或多 __ 種選自由以下各物組成之群的還原劑:麩胱甘肽、半胱胺 酸、胱胺、巯基乙酸鹽、二硫赤蘚糖醇及二硫蘇糖醇。 在合適溫度下培養原核宿主細胞。對於大腸桿菌生長而 言,例如,較佳溫度在約2〇〇c至約39t、更佳約25<>c至約 . 37 C之範圍内,甚至更佳在約30eC下。培養基之pH值主要 • 視宿主生物體而定可為約5至約9範圍内之任何?11值。對於 大腸桿菌而言’ pH值較佳為約6.8至約7.4,且更佳為約 7.0。 若本發明之表現載體中使用誘導型啟動子,則在適合於 活化啟動子之條件下誘導蛋白表現。在本發明之一態樣 中’ PhoA啟動子用於控制多肤轉錄。因此,將經轉型之宿 主細胞培養於峨酸鹽限制性培養基中以進行誘導。鱗酸鹽 限制性培養基較佳為C.R.A.P培養基(參見例如Simm〇ns等 人,J. Immunol. Methods(2002),263:133-147)。如此項技 術中已知’可根據所採用之載體構築體來使用多種其他誘 導劑。 在一項實施例中’本發明之經表現多肽經分泌至宿主細 142552.d〇c -79· 201011047 w〜用貨甲且自其回收。蛋白回收一般包含通常藉由諸如 滲壓衝擊、超音波處理或溶解之方式使微生物碎^。—旦 細胞碎裂,則可藉由離心或過濾來移除細胞碎片或全細 胞。例如,可藉由親和樹脂層析法來進一步純化蛋白^ = 者,可將蛋白轉移至培養基中且在其中進行分離。可自^ 養物中移除細胞,且將培養物上清液過渡且濃縮以進一: 純化所產生之蛋白。可使用諸如聚丙烯醯胺凝膠電泳 (PAGE)及西方墨點檢定(Western bl〇t檢定)之常用已知方法 來進一步分離及識別經表現之多肽。 在本發明之一態樣中,藉由醱酵方法大批量地進行抗體 生產。可利用多種大規模饋料分批醱酵程序來產生重組蛋 白。大規模醱酵具有至少1000公升之容量,較佳約1〇〇〇 至100,000公升之容量。該等醱酵器使用葉輪攪拌器來分 配氧及養份,尤其葡萄糖(較佳之碳/能量來源)。小規模醱 酵通常係指在體積容量不大於約100公升且可在約1公升至 約100公升範圍内之醱酵罐中進行的醱酵。 在撥酵方法中,一般在細胞已於合適條件下生長至所需 密度(例如OD550為約180_220,在該階段細胞處於穩定期 早期)後開始誘導蛋白表現。如此項技術中已知且如上文 所述’可根據所採用之載體構築體使用多種誘導劑。可在 誘導之前使細胞生長較短時間。通常誘導細胞約12至5〇小 時’但可使用較長或較短之誘導時間。 為改良本發明之多肽的產率及品質,可改變多種醱酵條 件°舉例而言’為改良所分泌抗體多肽之適當組裝及摺 142552.doc • 80 · 201011047 疊,可使用過度表現伴隨蛋白(諸如Dsb蛋白(DsbA、 DsbB、DsbC、DsbD及/或DsbG)或FkpA(具有伴隨蛋白活 性之肽基脯胺醯基順,反-異構酶))之額外載體來共轉型宿 主原核細胞。已證實伴隨蛋白有利於細菌宿主細胞中所產 生之異源蛋白的適當摺疊及溶解性。Chen等人(1999) J. Bio. Chem. 274:19601-19605 ; Georgiou等人,美國專利第 6,083,715 號;Georgiou 等人,美國專利第 6,027,888 號;In addition, phage vectors containing replicons and control sequences compatible with the host microorganism can be used in conjunction with such hosts as transformation vectors. For example, a phage such as XGEM.TM_-11 can be used to prepare a recombinant vector that can be used to transform a susceptible host cell such as Escherichia coli LE392. The expression vector of the present invention may comprise two or more promoter-cistronic pairs encoding each polypeptide component. The promoter is an untranslated regulatory sequence located upstream (5') of the cistron that regulates its expression. Prokaryotic promoters generally fall into two categories: inducible and constitutive. An inducible promoter is a promoter that initiates an increased amount of cistronic transcription under the control of its response to changes in culture conditions, such as the presence or absence of nutrients or temperature changes. A large number of promoters recognized by a variety of potential host cells are well known. The promoter can be operably linked to the coding light or heavy chain by removing the selected promoter from the source vessel by restriction enzyme digestion and inserting the isolated promoter sequence into the vector of the present invention. Anti-ship. Natural: promoter sequences and multiple, heterologous promoters can be used to guide the expansion and/or performance of the target. - Some implementation of the financial, Xiang (four) promoter, this fairy is as compared with the natural standard 142552.doc -75- 201011047 dry peptide starting, the heterologous promoter usually allows the performance of the target no gene higher transcription and yield high. Promoters suitable for use in prokaryotic hosts include the PhoA promoter, the galactosidase and lactose promoter systems, the tryptophan (trp) promoter system, and hybrid promoters (such as the tac or trc promoter). However, other promoters that are functional in bacteria, such as other known bacterial or bacteriophage promoters, are also suitable. Nucleotide sequences thereof have been disclosed, thereby enabling those skilled in the art to use ligators or linkers to join cistrons encoding the underlying light and heavy chains (Siebenlist et al., (1980) Cell 20: 269 ) to provide any desired restriction sites. In one aspect of the invention, each cistron within the recombinant vector comprises a secretion signal sequence component that directs translocation of the expressed polypeptide across the membrane. Typically, the sequence of 彳, 彳5 can be a component of the vector, or it can be part of the target polypeptide DNA inserted into the vector. The signal sequence selected for the purposes of the present invention shall be the ## sequence recognized by the host cell and processed (i.e., cleaved by signal peptidase). For prokaryotic host cells that do not recognize and process the native signal sequence of the heterologous polypeptide, the signal sequence is replaced by, for example, a prokaryotic SEQ sequence selected from the group consisting of: phytase, penicillinase , ϊρρ or thermostable enterotoxin II (STII) leader sequence, LamB, PhoE, PelB, OmpA and MBP. In one embodiment of the invention, the signal sequence used in the two cistrons of the expression system is the STII signal sequence or a variant thereof. In another aspect, the production of the immunoglobulin of the present invention can occur in the cytoplasm of the host cell, and thus there is no need for a secretion signal 142552.doc • 76- 201011047 in each cistron. In this regard, both the light and heavy chains of immunoglobulins are expressed, folded, and assembled in the cytoplasm to form functional immunoglobulins. Certain host strains (e.g., E. coli trxB-strain) provide cytoplasmic conditions that facilitate disulfide bond formation, thereby allowing proper folding and assembly of expressed protein subunits (Proba and Pluckthun, Gene, 159:203 (1995)). Prokaryotic host cells suitable for expression of the antibodies of the invention include archaea and Eubacteria, such as Gram-negative or Gram-positive organisms. Examples of suitable bacteria include Escherichia (e.g., Escherichia coli), Bacilli (e.g., Bacillus subtilis (Enterobacteria, Enterobacteria, Pseudomonas) species (e.g., P. aeruginosa) P. aeruginosa, Salmonella typhimurium, Serrai/a warcescaws, Klebsiella, Proteus, Shigella (Shigella), Rhizobia, Vitreoscilla or Paracoccus. In one embodiment, Gram-negative cells are used. In one embodiment, E. coli cells are used as the present Host of the invention. Examples of E. coli strains include strain W3 11 〇 (Bachmann, Cellular and Molecular Biology, Vol. 2 (Washington, DC: American Society for Microbiology, 1987), pp. 1190-1219; ATCC Accession No. 27,325) and Its derivatives include strain 33D3 (U.S. Patent No. 5,639,635) having the genotype W3110 AfhuA (ΔtonA) ptr3 lac Iq lacL8 ΔompTA(nmpc-fepE) degP41 kanR. And derivatives thereof (such as Escherichia coli 294 (ATCC 31,446), Escherichia coli B, large 142552.doc -77-201011047 Enterobacteriaceae m76 (ATCC 31,537) and Escherichia coli rv3〇8 (atcc 3U608)) are also Suitable methods for the purpose of illustrating, but not limiting, the derivatives of the above-mentioned bacteria of the genotype (4) are known in the art and are described, for example, in Bass et al., Proteins, 8: 309-3 14 (199 〇). It is generally necessary to consider the replicability of replicons in bacterial cells to select appropriate bacteria. For example, when using well-known plastids (such as PBR322, pBR325, pACYci77 or pKN41〇) When a replicon is provided, E. coli, Serratia, or Salmonella species can be suitably used as a host. Host cells should generally secrete minimal amounts of proteolytic enzymes, and additional protease inhibitors can be incorporated into cell cultures as needed. • Antibody Production The host cell is transformed with the above expression vector and cultured in a conventional medium modified as appropriate to induce a promoter, select a transformant or amplify a gene encoding the desired sequence. Transformation means introducing DNA into a prokaryotic host so that the DNA can be replicated as an in vitro element or by a chromosomal component. Depending on the host cell used, 0 is transformed with standard techniques appropriate for such cells. Treatment with gasified calcium is typically used for bacterial cells containing substantial cell wall barriers. Another method of transformation uses polyethylene glycol/DMS. Another technique used is electroporation. Prokaryotic cells used to produce the polypeptides of the invention are grown in a medium known in the art and suitable for culturing selected host cells. Examples of suitable media include Luria broth (LB) plus essential nutrient supplements 142552.doc • 78 · 201011047. In some examples, the medium also contains a selection agent selected based on the construction of the expression vector. 'to selectively allow the growth of prokaryotic cells containing the expression vector. For example, ampicillin is added to the medium to grow cells expressing the ampicillin resistance gene. Any necessary supplements other than carbon, nitrogen and inorganic phosphate sources, either alone or in admixture with another supplement or medium (such as a complex nitrogen source), may also be included. The medium may optionally contain one or more reducing agents selected from the group consisting of glutathione, cysteine, cystamine, thioglycolate, dithioerythritol, and dithiosulphate. Sugar alcohol. Prokaryotic host cells are cultured at a suitable temperature. For E. coli growth, for example, a preferred temperature is in the range of from about 2 〇〇c to about 39 Torr, more preferably about 25 Å; > c to about 37 C, even more preferably at about 30 eC. The pH of the medium is mainly • Any one of about 5 to about 9 depending on the host organism? 11 values. For E. coli, the pH is preferably from about 6.8 to about 7.4, and more preferably about 7.0. If an inducible promoter is used in the expression vector of the present invention, protein expression is induced under conditions suitable for activating the promoter. In one aspect of the invention, the ' PhoA promoter is used to control polypeptide transcription. Therefore, the transformed host cells are cultured in a citrate-restricted medium for induction. The sulphate-restricted medium is preferably a C.R.A.P medium (see, for example, Simm〇ns et al, J. Immunol. Methods (2002), 263: 133-147). As is known in the art, a variety of other attracting agents can be used depending on the carrier construct employed. In one embodiment, the expressed polypeptide of the present invention is secreted to the host fine 142552.d〇c -79· 201011047 w~ with and recovered from the cargo. Protein recovery generally involves microbial disruption typically by means such as osmotic shock, ultrasonic treatment or dissolution. Once the cells have shattered, cell debris or whole cells can be removed by centrifugation or filtration. For example, the protein can be further purified by affinity resin chromatography, and the protein can be transferred to and separated in the medium. The cells can be removed from the nutrient, and the culture supernatant is transiently and concentrated to further: purify the produced protein. The commonly known methods such as polyacrylamide gel electrophoresis (PAGE) and Western blot assay (Western bl〇t assay) can be used to further isolate and identify the expressed polypeptide. In one aspect of the invention, antibody production is carried out in large quantities by fermentation. A variety of large-scale feed batch fermentation procedures can be utilized to generate recombinant proteins. Large-scale fermentation has a capacity of at least 1000 liters, preferably about 1 to 100,000 liters. These fermenters use an impeller agitator to distribute oxygen and nutrients, especially glucose (preferably carbon/energy sources). Small scale fermentation usually refers to fermentation in a fermentor having a volumetric capacity of no more than about 100 liters and a range of from about 1 liter to about 100 liters. In the fermentation method, protein expression is generally initiated after the cells have been grown to the desired density under suitable conditions (e.g., OD550 is about 180-220, at which stage the cells are in the early stationary phase). A variety of inducing agents can be used depending on the carrier construct employed, as is known in the art and as described above. Cells can be grown for a short period of time prior to induction. The cells are usually induced for about 12 to 5 hours' but a longer or shorter induction time can be used. In order to improve the yield and quality of the polypeptide of the present invention, various fermentation conditions can be changed. For example, to improve the proper assembly of the secreted antibody polypeptide and fold 142552.doc • 80 · 201011047, the overexpression accompanying protein can be used ( Additional vectors such as Dsb proteins (DsbA, DsbB, DsbC, DsbD and/or DsbG) or FkpA (peptidyl amidoxime cis, trans-isomerase with accompanying protein activity) are used to co-transform host prokaryotic cells. Concomitant proteins have been shown to facilitate proper folding and solubility of heterologous proteins produced in bacterial host cells. Chen et al. (1999) J. Bio. Chem. 274: 19601-19605; Georgiou et al., U.S. Patent No. 6,083,715; Georgiou et al., U.S. Patent No. 6,027,888;
Bothmann 及 Pluckthun (2000) J. Biol. Chem. 275:17100-17105 ; Ramm及Pluckthun (2000) J. Biol. Chem. 275:17106-17113 ; Arie等人(2001) Mol· Microbiol. 39:199-210。 為使所表現之異源蛋白(尤其對蛋白水解敏感之蛋白)之 蛋白水解降至最低,某些缺乏蛋白水解酶之宿主菌株可用 於本發明。舉例而言,宿主細胞菌株可經修飾以實現編碼 諸如蛋白酶III、OmpT、DegP、Tsp、蛋白酶I、蛋白酶 Mi、蛋白酶V、蛋白酶VI及其組合之已知細菌蛋白酶之基Bothmann and Pluckthun (2000) J. Biol. Chem. 275:17100-17105; Ramm and Pluckthun (2000) J. Biol. Chem. 275:17106-17113; Arie et al. (2001) Mol·Microbiol. 39:199- 210. To minimize the proteolysis of the heterologous proteins (especially proteolytically sensitive proteins) exhibited, certain host strains lacking proteolytic enzymes are useful in the present invention. For example, a host cell strain can be modified to achieve a base of a known bacterial protease encoding a protease such as Protease III, OmpT, DegP, Tsp, Protease I, Protease Mi, Protease V, Protease VI, and combinations thereof.
因的基因突變。一些大腸桿菌蛋白酶缺陷性菌株可予以利 用且描述於(例如)J〇ly 等人,(1998),Proc. Natl. Acad· Sci. USA 95:2773-2777 ; Georgiou等人,美國專利第 5,264,365 號;Georgiou等人,美國專利第5,508,192號;Hara等人,Due to genetic mutations. Some E. coli protease deficient strains are available and described, for example, in J. Ly et al., (1998), Proc. Natl. Acad. Sci. USA 95: 2773-2777; Georgiou et al., U.S. Patent No. 5,264,365 ;Georgiou et al., U.S. Patent No. 5,508,192; Hara et al.
Microbial Drug Resistance, 2:63-72(1996)中。 在一項實施例中,缺乏蛋白水解酶且經過度表現一或多 種伴隨蛋白之質體轉型的大腸桿菌菌株用作本發明之表現 系統中的宿主細胞。 iii.抗體純化 142552.doc -81 - 201011047 可採用此項技術中已知之標準蛋白純化方法。以下程序 為例示性合適純化程序··免疫親和管柱或離子交換管柱之 分級分離、乙醇沈澱、逆相HPLC、二氧化矽或陽離子交 換樹脂(諸如DEAE)層析、層析聚焦、SDS-PAGE、硫酸錢 沈殿及使用(例如)Sephadex G-75之凝膠過濾。 在一態樣中,將固定於固相上之蛋白A用於本發明之全 長抗體產物的免疫親和純化。蛋白A為來自金黃色葡萄球 菌仙/^似)之41 kD細胞壁蛋白,其以高親 和力與抗體之Fc區結合。Lindmark等人(1983) J. Immunol. ©0 Meth. 62:1-13。固定蛋白A之固相較佳為包含玻璃或二氧 化矽表面之管柱,更佳為可控多孔玻璃管柱或矽酸管柱。 在一些應用中,管柱已經諸如甘油之試劑塗覆以試圖防止 污染物之非特異性黏附。 作為純化之第一步驟,將如上所述之源自細胞培養物之 製劑塗覆至固定有蛋白A之固相上以使得所關注抗體與蛋 白A特異性結合。隨後洗務固相以移除與固相非特異性結 合之〉可染物。最後藉由溶離自固相回收所關注之抗體。0 b·使用真核宿主細胞產生抗親: 二载體組分通常包括(但不限於)以下各物中之一或多者: L號序列、複製起點、一或多個標記物基因、增強子要 素、啟動子及轉錄終止序列。 信號序列組分 用於真核宿主細胞中之載體亦可含有信號序列或在所關 之成熟蛋白或多狀之N末端具有特異性分裂位點的其他 142552.doc -82- 201011047 多肽。所選擇之異源信號序列較佳為經宿主細胞識別且加 工(亦即,由信號肽酶裂解)之信號序列。在哺乳動物細胞 表現中,哺乳動物信號序列以及病毒分泌前導序列(例 如,單純性疱疹gD信號序列)係可用的。 該前驅區之DNA在閱讀框架中與編碼抗體2DNa接合。 複製起點 一般而言,哺乳動物表現載體無需複製起點組分。舉例 而言,一般可使用SV40起點,僅係因為其含有早期啟動 (Ui)選擇基因組分 表現及選殖載體可含有選擇基因,亦稱為可選擇標記 物。典型選擇基因編碼具有下列作用之蛋白··(勾賦予對抗 生素或其他毒素(例如胺苄西林、新黴素、甲胺嗓吟或四 環素)之抗性;(b)補充營養缺陷型不足(相關聯時);或(c) 供應自複合培養基不可得之關鍵養份。Microbial Drug Resistance, 2: 63-72 (1996). In one embodiment, an E. coli strain that lacks a proteolytic enzyme and exhibits one or more plastid transformations with accompanying proteins is used as a host cell in the expression system of the invention. Iii. Antibody Purification 142552.doc -81 - 201011047 Standard protein purification methods known in the art can be employed. The following procedure is an exemplary suitable purification procedure: fractionation of immunoaffinity or ion exchange columns, ethanol precipitation, reverse phase HPLC, ceria or cation exchange resin (such as DEAE) chromatography, chromatofocusing, SDS- PAGE, sulfuric acid, and gel filtration using, for example, Sephadex G-75. In one aspect, protein A immobilized on a solid phase is used for immunoaffinity purification of the full length antibody product of the present invention. Protein A is a 41 kD cell wall protein from Staphylococcus aureus which binds to the Fc region of the antibody with high affinity. Lindmark et al. (1983) J. Immunol. ©0 Meth. 62:1-13. The solid phase of the immobilized protein A is preferably a column comprising a glass or a ruthenium dioxide surface, more preferably a controlled porous glass column or a ruthenium column. In some applications, the tubing has been coated with a reagent such as glycerin in an attempt to prevent non-specific adhesion of contaminants. As a first step of purification, the cell culture-derived preparation as described above is applied to a solid phase immobilized with protein A to specifically bind the antibody of interest to protein A. The solid phase is then washed to remove the > dyeable material that is non-specifically bound to the solid phase. Finally, the antibody of interest is recovered by solid phase separation by lysis. 0 b. Generation of anti-parents using eukaryotic host cells: The two vector components typically include, but are not limited to, one or more of the following: sequence L, origin of replication, one or more marker genes, enhancement Sub-elements, promoters, and transcription termination sequences. Signal sequence components Vectors for use in eukaryotic host cells may also contain a signal sequence or other 142552.doc-82-201011047 polypeptide having a specific cleavage site at the N-terminus of the mature protein or polymorphism. The heterologous signal sequence selected is preferably a signal sequence that is recognized by the host cell and processed (i.e., cleaved by a signal peptidase). In mammalian cell expression, mammalian signal sequences as well as viral secretion leader sequences (e. g., herpes simplex gD signal sequences) are available. The DNA of the precursor region is ligated to the coding antibody 2DNa in the reading frame. Origin of replication Generally, mammalian expression vectors do not require replication of the starting component. For example, the SV40 origin can generally be used simply because it contains early-stage (Ui) selection gene component expression and the selection vector can contain a selection gene, also known as a selectable marker. A typical selection gene encodes a protein that has the following effects: (to confer resistance to antibiotics or other toxins (such as ampicillin, neomycin, methotrexate or tetracycline); (b) to supplement auxotrophy deficiency (related) (or) a key nutrient that is not available from the complex medium.
選擇方案之一實例利用藥物來阻滯宿主細胞之生長。經 異源基因成功轉型之彼等細胞產生賦予藥物抗性之蛋白且 因此在經歷選擇方案之後存活。此顯性選擇之實例使用藥 物新黴素、黴酌酸及潮黴素(hygromycin)。 哺乳動物細胞之合適可選擇標記物的另一實例為使得可 識別能夠吸收抗體核酸之細胞組分的彼等標記物,諸如 DHFR、胸苷激酶、金屬硫蛋白“及_π(較佳為靈長類動物 金屬硫蛋白基因)、腺苷脫胺酶、鳥胺酸脫羧酶等。 舉例而言’首先藉由在含有甲胺喋呤(Mtx)(DHFR之競 142552.doc -83· 201011047 爭性拮抗劑)之培養基中培養所有轉型物來識別經DHFR選 擇基因轉型之細胞。當採用野生型DHFR時,適當之宿主 細胞為缺乏DHFR活性之中國倉鼠卵巢(CHO)細胞株(例如 ATCC CRL-9096)。 或者,可藉由在含有可選擇標記物(諸如胺基糖苷抗生 素,例如卡那黴素、新黴素或G418)之選擇劑的培養基中 進行細胞生長來選擇經編碼抗體之DNA序列、野生型 DHFR蛋白及另一可選擇標記物(諸如胺基糖苷3·-磷酸轉移 酶(ΑΡΗ))轉型或共轉型之宿主細胞(尤其為含有内源性 DHFR之野生型宿主)。參見美國專利第4,965,199號。 (iv)啟動子組分 表現及選殖載體通常含有由宿主生物體識別且可操作地 連接至抗體多肽核酸之啟動子。已知真核生物之啟動子序 列。實際上所有真核基因均具有位於轉錄起始位點上游約 25至3 0個鹼基處之AT富集區。在許多基因轉錄起始處上游 70至80個鹼基處發現之另一序列為CNCAAT區,其中N可 為任何核苷酸。在大部分真核基因之3'末端處為AATAAA 序列,其可為用於將聚腺苷酸尾(poly A tail)添加至編碼序 列之3’末端的信號。所有該等序列均適於插入真核表現載 體中。 哺乳動物宿主細胞中自載體之抗體多肽轉錄(例如)受自 病毒(諸如多瘤病毒、禽癌·病毒、腺病毒(諸如腺病毒2)、 牛乳頭狀瘤病毒、禽肉瘤病毒、細胞巨大病毒、反轉錄病 毒、B型肝炎病毒及猿病毒40(SV40))基因組,自異源哺乳 142552.doc -84- 201011047 動物啟動子(例如肌動蛋白啟動子或免疫球蛋白啟動子), 自熱休克啟動子獲得之啟動子來控制,其限制條件為該等 啟動子與宿主細胞系統相容。 SV40病毒之早期及晚期啟動子係作為亦含有SV4〇病毒 複製起點之S V 4 0限制性片段而便利地獲得。人類細胞巨大 病毒之即刻早期啟動子係作為Hindlll E限制性片段而便利 地獲得。美國專利第4,419,446號中揭示在哺乳動物宿主中 ▲赢 使用牛乳頭狀瘤病毒作為載體來表現DNA之系統。美國專 利第4,601,978號中描述對於該系統之修改。或者,勞斯肉 瘤病毒(Rous Sarcoma Virus)長末端重複序列可用作啟動 子。 ' (W增強子要素組分 由高級真核細胞轉錄編碼本發明之抗體多肽的DNA通常 係藉由將增強子序列插入載體中來增強。目前已知來自哺 乳動物基因(球蛋白、彈性蛋白酶、白蛋白、心胎蛋白及 ^ 胰島素)之許多增強子序列。然而,一般將使用來自真核 細胞病毒之增強子。實例包括位於複製起點最近侧之Sv4〇 增強子(bp 1 00-270)、細胞巨大病毒早期啟動子增強子、 位於複製起點最近側之多瘤增強子及腺病毒增強子。關於 活化真核啟動子之增強要素,亦參見Yaniv,Nature 297:1 Τ-ΐ 8(1982) 。 雖然 可將增強子在編碼抗體多肽之序列 的位置 5'或3'處剪接至載體中,但較佳定位於啟動子之位點5,處。 (W)轉錄終止組分 用於真核宿主細胞中之表現載體一般亦將含有終止轉錄 142552.doc • 85 - 201011047 及穩定mRNA所必需之序列。該等序列通常可自真核或病 毒DNA或cDNA之5’且偶爾自3'之未經轉譯區獲得。該等區 含有在編碼抗體之mRNA之未經轉譯部分中轉錄為聚腺苷 酸化片段的核苷酸區段。一種適用之轉錄終止組分為牛生 長激素聚腺苷酸化區。參見WO94/11026及其中所揭示之 表現載體。 (vii)選擇及轉型宿主細胞 用於選殖或表現本文載體中之DNA的合適宿主細胞包括 本文所述之高級真核生物細胞,包括脊椎動物宿主細胞。 脊椎動物細胞在培養物(組織培養物)中之繁殖已成為一種 常規程序。適用哺乳動物宿主細胞株之實例為經 SV40(COS_7,ATCC CRL 165 1)轉型之猴腎 CV1 株;人類 胚腎株(293或為在懸浮培養物中生長而經次選殖之293細 胞,Graham等人,J. Gen. Virol. 36:59 (1977));幼倉鼠腎 細胞(BHK, ATCC CCL 10);中國倉鼠卵巢細胞/-DHFR(CHO, Urlaub 等人,Proc. Natl. Acad. Sci. USA 77: 4216One example of a selection protocol utilizes drugs to block the growth of host cells. The cells that have been successfully transformed by the heterologous gene produce a protein that confers drug resistance and thus survives the selection protocol. Examples of this dominant selection use the drugs neomycin, mycophenolate, and hygromycin. Another example of a suitable selectable marker for a mammalian cell is such that it recognizes a marker capable of absorbing cellular components of the antibody nucleic acid, such as DHFR, thymidine kinase, metallothionein "and _π (preferably Long-class animal metallothionein gene), adenosine deaminase, ornithine decarboxylase, etc. For example, 'first by competing with methylamine (Mtx) (DHFR competition 142552.doc -83· 201011047 All transformants are cultured in a medium that recognizes cells transformed with the DHFR selection gene. When wild-type DHFR is used, the appropriate host cell is a Chinese hamster ovary (CHO) cell line lacking DHFR activity (eg, ATCC CRL- 9096) Alternatively, the DNA sequence encoding the antibody can be selected by cell growth in a medium containing a selectable marker such as an aglycoside antibiotic such as kanamycin, neomycin or G418. , wild-type DHFR protein and another selectable marker (such as aminoglycoside 3·-phosphotransferase (ΑΡΗ)) transformed or co-transformed host cells (especially wild-type sinks containing endogenous DHFR) See also U.S. Patent No. 4,965,199. (iv) Promoter component expression and selection vectors typically contain a promoter that is recognized by the host organism and operably linked to the antibody polypeptide nucleic acid. Promoter sequences of eukaryotic organisms are known. In fact, all eukaryotic genes have an AT-rich region located approximately 25 to 30 bases upstream of the transcription start site. Another one found 70 to 80 bases upstream from the start of transcription of many genes The sequence is the CNCAAT region, wherein N can be any nucleotide. At the 3' end of most eukaryotic genes is the AATAAA sequence, which can be used to add a poly A tail to the coding sequence. Signals at the 3' end. All of these sequences are suitable for insertion into eukaryotic expression vectors. Antibody polypeptides from vectors in mammalian host cells are transcribed (eg) from viruses (such as polyoma, avian, viral, adenovirus) (such as adenovirus 2), bovine papilloma virus, avian sarcoma virus, giant cell virus, retrovirus, hepatitis B virus and prion 40 (SV40)) genome, from heterologous breastfeeding 142552.doc -84- 201011047 Animals A promoter (such as an actin promoter or an immunoglobulin promoter) is controlled by a promoter obtained from a heat shock promoter, the restriction being that the promoter is compatible with the host cell system. Early and late initiation of the SV40 virus The subfamily is conveniently obtained as an SV40 restriction fragment that also contains an SV4 prion origin of replication. The immediate early promoter of the human cell megavirus is conveniently obtained as a Hindlll E restriction fragment. U.S. Patent No. 4,419,446 In mammalian hosts, ▲ wins the system of expressing DNA using bovine papilloma virus as a vector. Modifications to the system are described in U.S. Patent No. 4,601,978. Alternatively, the long terminal repeat of the Rous Sarcoma Virus can be used as a promoter. ' (W enhancer element component is transcribed from high-grade eukaryotic cells to encode the DNA of the antibody polypeptide of the present invention, which is usually enhanced by inserting an enhancer sequence into a vector. It is currently known from mammalian genes (globulin, elastase, Many enhancer sequences of albumin, heart protein, and insulin. However, enhancers from eukaryotic viruses will generally be used. Examples include the Sv4 〇 enhancer (bp 1 00-270) located on the closest side of the origin of replication, The cell giant virus early promoter enhancer, the polyoma enhancer located on the nearest side of the replication origin, and the adenovirus enhancer. See also Yaniv, Nature 297:1 Τ-ΐ 8 (1982) for enhancing elements of the activated eukaryotic promoter. Although the enhancer can be spliced into the vector at position 5' or 3' of the sequence encoding the antibody polypeptide, it is preferably located at position 5 of the promoter. (W) Transcription termination component for eukaryotic The expression vector in the host cell will also generally contain sequences necessary for termination of transcription 142552.doc • 85 - 201011047 and for stable mRNA. These sequences are usually 5' and even from eukaryotic or viral DNA or cDNA. Obtained from the untranslated region of 3'. These regions contain nucleotide segments transcribed into polyadenylated fragments in the untranslated portion of the mRNA encoding the antibody. A suitable transcription termination component is bovine growth hormone. Polyadenylation region. See WO94/11026 and the expression vectors disclosed therein. (vii) Selection and transformation of host cells Suitable host cells for the selection or expression of DNA in the vectors herein include the higher eukaryotes described herein. Cells, including vertebrate host cells. The propagation of vertebrate cells in cultures (tissue cultures) has become a routine procedure. Examples of suitable mammalian host cell lines are monkeys transformed by SV40 (COS_7, ATCC CRL 165 1). Kidney CV1 strain; human embryonic kidney strain (293 or 293 cells that have been subcultured in suspension culture, Graham et al, J. Gen. Virol. 36:59 (1977)); baby hamster kidney cells ( BHK, ATCC CCL 10); Chinese hamster ovary cells/-DHFR (CHO, Urlaub et al., Proc. Natl. Acad. Sci. USA 77: 4216
(1980));小鼠塞利特氏細胞(mouse sertoli cell)(TM4, Mather, Biol. Reprod. 23:243-251 (1980));猴腎細胞(CV1 ATCC CCL 70);非洲綠狼腎細胞(African green monkey kidney cell)(VERO-76, ATCC CRL-1587);人類宮頸癌細胞 (HELA,ATCC CCL 2);犬腎細胞(MDCK,ATCC CCL 34); 布法羅大鼠肝細胞(buffalo rat liver cell)(BRL 3A, ATCC CRL 1442);人類肺細胞(W138, ATCC CCL 75);人類肝細 胞(Hep G2, HB 8065);小鼠乳腺腫瘤(MMT 060562, ATCC 142552.doc -86- 201011047 CCL51) ; TRI 細胞(Mather 等人,Annals N.Y. Acad. Sci. 383:44-68 (1982)) ; MRC 5細胞;FS4細胞;及人類肝癌株 (Hep G2)。 用上述用於產生抗體之表現或選殖載體使宿主細胞轉 型,且將其培養於適當時經修飾之習知培養基中以誘導啟 動子、選擇轉型物或擴增編碼所需序列之基因。 (yiii)培養宿主細胞 用於產生本發明抗體之宿主細胞可培養於各種培養基 中。市售培養基(諸如漢姆氏(Ham's F10,Sigma)、最低必 需培養基(MEM)(Sigma)、RPMI-1640(Sigma)及杜氏改良依 格氏培養基(Dulbecco's Modified Eagle’s Medium ’ • DMEM)(Sigma))均適合於培養宿主細胞。此外,Ham等 - 人,Meth. Enz. 58:44 (1979),Barnes等人,Anal. Biochem. 102:255(1980)); mouse sertoli cell (TM4, Mather, Biol. Reprod. 23: 243-251 (1980)); monkey kidney cell (CV1 ATCC CCL 70); African green wolf kidney African green monkey kidney cell (VERO-76, ATCC CRL-1587); human cervical cancer cells (HELA, ATCC CCL 2); canine kidney cells (MDCK, ATCC CCL 34); Buffalo rat liver cells ( Buffalo rat liver cell) (BRL 3A, ATCC CRL 1442); human lung cells (W138, ATCC CCL 75); human hepatocytes (Hep G2, HB 8065); mouse mammary tumors (MMT 060562, ATCC 142552.doc -86 - 201011047 CCL51); TRI cells (Mather et al., Annals NY Acad. Sci. 383:44-68 (1982)); MRC 5 cells; FS4 cells; and human liver cancer strains (Hep G2). The host cell is transformed with the above-described expression or selection vector for producing the antibody, and cultured in a conventional medium modified as appropriate to induce a promoter, select a transformant or amplify a gene encoding the desired sequence. (yiii) Culture of host cells Host cells for producing the antibodies of the present invention can be cultured in various media. Commercially available media (such as Ham's F10, Sigma, Minimum Essential Medium (MEM) (Sigma), RPMI-1640 (Sigma), and Dulbecco's Modified Eagle's Medium' (DMEM) (Sigma) Both are suitable for culturing host cells. In addition, Ham et al. - Man, Meth. Enz. 58:44 (1979), Barnes et al., Anal. Biochem. 102:255
(1980),美國專利第4,767,704號、第4,657,866號、第 4,927,762號、第 4,560,655 號或第 5,122,469號、WO 90/03430、 WO 87/00195或美國專利第30,985號中所述之任何培養基 均可用作宿主細胞之培養基。該等培養基中之任一者可視 需要補充激素及/或其他生長因子(諸如胰島素、轉鐵蛋白 或表皮生長因子)、鹽(諸如氯化鈉、鈣鹽、鎂鹽及磷酸 鹽)、緩衝液(諸如HEPES)、核苷酸(諸如腺苷及胸苷)、抗 生素(諸如GENTAMYCIN·™藥物)、微量元素(定義為通常 以微莫耳濃度範圍内之最終濃度存在的無機化合物)及葡 萄糖或等效能源。亦可包括將為熟習此項技術者已知之適 當濃度的任何其他必需補充物。培養條件(諸如溫度、pH 142552.doc -87 - 201011047 值及其類似條件)為先前用於為表現所選擇之宿主細胞的 彼等條件,且將為-般熟習此項技術者所顯而易見。 (h)純化抗體 當使用重組技術時,可在細胞内產生抗體或將其直接分 必至培養基中。^抗體在細胞内產生則作為第一步驟, 例如藉由離心或超遽來移除宿主細胞或溶胞片段之微粒碎 片。在抗體經分泌至培養基中之情況下,通常首先使用市 售蛋白濃縮過濾器(例如,Amicon或Millip〇re Peiiic〇n超濾 裝置)來濃縮來自該等表現系統之上清液。在任何先前步 驟中均可包括諸如PMSF之蛋白酶抑制劑以抑制蛋白水 解’且可包括抗生素以防止外來污染物生長。 自細胞製備之抗體組合物可使用(例如)羥磷灰石層析 法、凝膠電泳法、透析及親和力層析法來純化,其中親和 力層析法為較佳之純化技術。蛋白A作為親和配位體之適 宜性視存在於抗體中之任何免疫球蛋白以域的種類及同型 而疋。蛋白A可用於純化基於人類γΐ、γ2或γ4重鍵之抗體 (Lindmark等人,J. Immunol. Meth. 62:1-13(1983))。對於 所有小鼠同型及人類γ3而言’均推薦蛋白g(Guss等人, EMBO J· 5:15671575(1986))。親和配位體所附著之基質最 通常為瓊脂糖,但其他基質為可用的。與使用瓊脂糖可達 成之流動速率及處理時間相比,諸如受控微孔玻璃或聚 (苯乙烯二乙烯基)苯之機械穩定性基質允許更快之流動速 率及更短之處理時間。在抗體包含CH3域之情況下,(1980), any of the media described in U.S. Patent Nos. 4,767,704, 4,657,866, 4,927,762, 4,560,655, or 5,122,469, WO 90/03430, WO 87/00195, or U.S. Patent No. 30,985, are available. As a medium for host cells. Any of these media may optionally be supplemented with hormones and/or other growth factors (such as insulin, transferrin or epidermal growth factor), salts (such as sodium chloride, calcium salts, magnesium salts and phosphates), buffers (such as HEPES), nucleotides (such as adenosine and thymidine), antibiotics (such as GENTAMYCIN·TM drugs), trace elements (defined as inorganic compounds usually present in final concentrations in the micromolar concentration range), and glucose or Equivalent energy. Any other necessary supplements that will be of a suitable concentration known to those skilled in the art may also be included. Culture conditions (such as temperature, pH 142552.doc -87 - 201011047 values and the like) are those previously used for the host cell selected for expression and will be apparent to those skilled in the art. (h) Purification of antibodies When recombinant techniques are employed, antibodies can be produced intracellularly or directly into the culture medium. ^ The antibody is produced intracellularly as a first step, for example by centrifugation or ultra-twisting to remove microparticle fragments of the host cell or lysate. Where the antibody is secreted into the culture medium, a commercially available protein concentration filter (e.g., Amicon or Millip® Re Peiiic® ultrafiltration device) is typically first used to concentrate the supernatant from the performance systems. Protease inhibitors such as PMSF may be included in any of the previous steps to inhibit protein hydrolysis' and may include antibiotics to prevent the growth of foreign contaminants. The antibody composition prepared from the cells can be purified using, for example, hydroxyapatite chromatography, gel electrophoresis, dialysis, and affinity chromatography, wherein affinity chromatography is a preferred purification technique. The suitability of protein A as an affinity ligand depends on the type and isotype of the domain of any immunoglobulin present in the antibody. Protein A can be used to purify antibodies based on human gamma, gamma 2 or gamma 4 heavy bonds (Lindmark et al, J. Immunol. Meth. 62: 1-13 (1983)). Protein g is recommended for all mouse isotypes and human gamma 3 (Guss et al, EMBO J. 5: 15671575 (1986)). The matrix to which the affinity ligand is attached is most typically agarose, but other matrices are available. Mechanically stable matrices such as controlled microporous glass or poly(styrenedivinyl)benzene allow for faster flow rates and shorter processing times than can be achieved using agarose flow rates and processing times. In the case where the antibody comprises a CH3 domain,
Bakerbond ABXTM樹脂(J. T. Baker,Phillipsburg,NJ)適用於 142552.doc -88- 201011047 純化。視待回收之抗體而定,亦可利用其他用於蛋白純化 之技術,諸如離子交換管柱分級分離、乙醇沈澱、逆相 HPLC、二氧化矽層析、肝素SEPHAROSE™層析、陰離子 或陽離子交換樹脂(諸如聚天冬胺酸管柱)層析、層析聚 焦、SDS-PAGE及硫酸銨沈澱。 在任何初步純化步驟之後,可使包含所關注抗體及污染 物之混合物經受使用pH值在約2.5至4_5之間的溶離緩衝劑 較佳在低鹽濃度(例如,約0至0.25 Μ鹽)下進行的低pH值 疏水性相互作用層析。 免疫結合物 本發明亦提供免疫結合物(互換地稱為「抗體-藥物結合 物」或「ADC」),其包含本文所述之結合至細胞毒性劑 (諸如化療劑、藥物、生長抑制劑、毒素(例如細菌、真 菌、植物或動物源之酶活性毒素或其片段))之任何抗 Notch 1 NRR抗體或放射性同位素(亦即放射性結合物)。Bakerbond ABXTM Resin (J. T. Baker, Phillipsburg, NJ) is suitable for purification from 142552.doc -88- 201011047. Depending on the antibody to be recovered, other techniques for protein purification, such as ion exchange column fractionation, ethanol precipitation, reverse phase HPLC, ceria chromatography, heparin SEPHAROSETM chromatography, anion or cation exchange, may also be utilized. Resin (such as polyaspartic acid column) chromatography, chromatofocusing, SDS-PAGE, and ammonium sulfate precipitation. After any preliminary purification step, the mixture comprising the antibody of interest and the contaminant can be subjected to a dissolution buffer having a pH between about 2.5 and 4-5, preferably at a low salt concentration (eg, about 0 to 0.25 Μ salt). Performing low pH hydrophobic interaction chromatography. Immunoconjugates The invention also provides immunoconjugates (interchangeably referred to as "antibody-drug conjugates" or "ADCs") comprising the binding agents described herein to cytotoxic agents (such as chemotherapeutic agents, drugs, growth inhibitors, Any anti-Notch 1 NRR antibody or radioisotope (ie, radioactive conjugate) of a toxin (eg, an enzymatically active toxin of bacterial, fungal, plant or animal origin or a fragment thereof).
使用抗體-藥物結合物進行細胞毒素或細胞生長抑制劑 之局部傳遞,亦即在治療癌症中使用藥物來殺死或抑制腫 瘤細胞(Syrigos 及 Epenetos (1999) Anticancer Research 19:605-614 ; Niculescu-Duvaz及 Springer (1997) Adv. Drg. Del. Rev. 26:151-172;美國專利第4,975,278號)使得藥物 部分可經靶向傳遞至腫瘤及其中之細胞内積聚,其中該等 未結合0藥劑之全身性投與可導致對於正常細胞以及待尋 求消除之腫瘤細胞而言不可接受之程度的毒性(Baldwin等 人,(1986)Lancet ρρ·(1986 年 3 月 15 曰):603-05 ; Thorpe, 142552.doc -89- 201011047 (1985) [Antibody Carriers Of Cytotoxic Agents In Cancer Therapy: A Review]於 Monoclonal Antibodies '84:Use of antibody-drug conjugates for local delivery of cytotoxin or cytostatic agents, ie, the use of drugs to treat or inhibit tumor cells in the treatment of cancer (Syrigos and Epenetos (1999) Anticancer Research 19: 605-614; Niculescu- Duvaz and Springer (1997) Adv. Drg. Del. Rev. 26:151-172; U.S. Patent No. 4,975,278) which allows targeted delivery of a drug moiety to a tumor and its accumulation in cells, wherein the unconjugated 0 agent Systemic administration can result in an unacceptable degree of toxicity to normal cells and tumor cells to be sought for elimination (Baldwin et al., (1986) Lancet ρρ. (March 15, 1986): 603-05; Thorpe , 142552.doc -89- 201011047 (1985) [Antibody Carriers Of Cytotoxic Agents In Cancer Therapy: A Review] on Monoclonal Antibodies '84:
Biological And Clinical Applications,A. Pinchera 等人 (編),第475-506頁中)。因此尋求具有最小毒性之最大功 效。已報導,多株抗體與單株抗體均適用於該等策略 (Rowland 等人,(1986) Cancer Immunol. Immunother., 21:183-87)。該等方法中使用之藥物包括道諾黴素、阿黴 素、曱胺喋呤及長春地辛(Rowland等人,(1986)上文)。抗 體-毒素結合物中所使用之毒素包括細菌毒素,諸如白喉 毒素(diphtheria toxin);植物毒素,諸如蓖麻毒素;小分 子毒素,諸如格爾德黴素(geldanamycin)(Mandler等人 (2000) Jour, of the Nat. Cancer Inst. 92(19):1573-1581 ; Mandler等人,(2000) Bioorganic & Med. Chem. Letters 10:1025-1028 ; Mandler等人,(2002) Bioconjugate Chem. 13:786-791)、類美登素(EP 1391213 ; Liu 等人,(1996) Proc. Natl. Acad. Sci. USA 93:8618-8623)及刺孢黴素(Lode 等人,(1998) Cancer Res. 58:2928 ; Hinman等人,(1993) Cancer Res. 53:3336-3342)。該等毒素可藉由包括微管蛋 白結合、DNA結合或拓撲異構酶抑制之機制來實現其細胞 毒性及細胞生長抑制效應。一些細胞毒性藥物當與大型抗 體或蛋白受體配位體結合時傾向於無活性或具有較小活 性。 ZEVALIN®(替伊莫單抗(ibritumomab tiuxetan), Biogen/Idec)為抗體-放射性同位素結合物,其係由藉由硫 142552.doc -90- 201011047 脲連接子-螯合劑所結合之針對CD20抗原(發現於正常及惡 性B淋巴細胞之表面上)之鼠類IgGlK單株抗體與mIn或9QY 放射性同位素組成(Wiseman等人,(2000) Eur. Jour. Nucl. Med. 27(7):766-77 ; Wiseman等人,(2002) Blood 99(12):4336-42 ; Witzig等人,(2002) J. Clin. Oncol. 20(10):2453-63 ; Witzig等人,(2002) J_ Clin. Oncol. 20(15):3262-69)。雖然 ZEVALIN對B細胞非霍奇金氏淋巴瘤(non-Hodgkin's Lymphoma,NHL)具有活性,但投藥導致大部分患者罹患 嚴重且長期之血球減少症。MYLOTARG™(吉妥珠單抗奥 0坐米星(gemtuzumab ozogamicin),Wyeth Pharmaceuticals), 一種由連接至刺孢黴素的hu CD33抗體組成之抗體藥物結 • 合物,於2000年獲准用於注射治療急性骨髓性白血病 . (Drugs of the Future (2000) 25 (7):686 ;美國專利第 4,970,198Biological And Clinical Applications, A. Pinchera et al. (eds., pp. 475-506). Therefore, seek the maximum efficacy with minimal toxicity. It has been reported that multiple antibodies and monoclonal antibodies are suitable for such strategies (Rowland et al. (1986) Cancer Immunol. Immunother., 21: 183-87). The drugs used in these methods include daunorubicin, amylin, amidoxime and vindesine (Rowland et al. (1986) supra). Toxins used in antibody-toxin conjugates include bacterial toxins such as diphtheria toxin; phytotoxins such as ricin; small molecule toxins such as geldanamycin (Mandler et al. (2000) Jour, of the Nat. Cancer Inst. 92(19): 1573-1581; Mandler et al., (2000) Bioorganic & Med. Chem. Letters 10:1025-1028; Mandler et al., (2002) Bioconjugate Chem. 13 :786-791), maytansinoid (EP 1391213; Liu et al, (1996) Proc. Natl. Acad. Sci. USA 93: 8618-8623) and calicheamicin (Lode et al., (1998) Cancer Res. 58:2928; Hinman et al, (1993) Cancer Res. 53:3336-3342). These toxins can achieve their cytotoxic and cytostatic effects by a mechanism including microtubule binding, DNA binding or topoisomerase inhibition. Some cytotoxic drugs tend to be inactive or less active when combined with large antibody or protein receptor ligands. ZEVALIN® (ibritumomab tiuxetan, Biogen/Idec) is an antibody-radioisotope conjugate that binds to CD20 antigen by sulfur 142552.doc -90- 201011047 urea linker-chelator Murine IgG1K monoclonal antibody (discovered on the surface of normal and malignant B lymphocytes) and mIn or 9QY radioisotope composition (Wiseman et al., (2000) Eur. Jour. Nucl. Med. 27(7): 766- 77; Wiseman et al., (2002) Blood 99(12): 4336-42; Witzig et al., (2002) J. Clin. Oncol. 20(10): 2453-63; Witzig et al., (2002) J_Clin Oncol. 20(15): 3262-69). Although ZEVALIN is active against B-cell non-Hodgkin's Lymphoma (NHL), administration of the drug causes severe and long-term hematocytopenia in most patients. MYLOTARGTM (gemtuzumab ozogamicin, Wyeth Pharmaceuticals), an antibody drug complex consisting of hu CD33 antibody linked to calicheamicin, was approved for injection in 2000. Treatment of acute myeloid leukemia. (Drugs of the Future (2000) 25 (7): 686; US Patent 4, 970, 198
號、第 5,079,233號、第 5,585,089號、第 5,606,040號、第 5,6937,62號、第 5,739,116號、第 5,767,285號、第 5,773,001 號)。卡妥珠單抗莫坦辛(Cantuzumab mertansine, Immunogen, Inc·),一種由經由雙硫鍵連接子SPP與類美登 素藥物部分(DM1)連接之huC242抗體組成的抗體藥物結合 物,正發展至II期試驗以用於治療表現CanAg之癌症,諸如 結腸癌、胰腺癌、胃癌及其他癌症。MLN-2704(Millennium Pharm.,BZL Biologies, Immunogen Inc.),一種由與類美登素藥 物部分(DM1)連接之抗前列腺特異性膜抗原(PSMA)單株抗 體組成的抗體藥物結合物,正處於研發中以用於潛在治療 前列腺腫瘤。奥利斯ί丁(auristatin)肽、奥利斯灯E(AE)及 142552.doc -91 - 201011047 單曱基奥利斯汀(monomethylauristatin ; MMAE)(海兔毒素 之合成類似物)係與嵌合單株抗體cBR96(對癌瘤上之Lewis Y具特異性)及cACIO(對血液科惡性疾病上之CD30具特異 性)結合(Doronina 等人(2003) Nature Biotechnology 21 (7):778-784)且正處於治療研發中。 適用於產生免疫結合物之化療劑描述於本文中(例如上 述)。可使用之酶促活性毒素及其片段包括:白喉A鏈、白 喉毒素之非結合活性片段、外毒素A鏈(來自綠膿桿菌 (Psewc/oAnowa·? 、萬麻毒素A鍵、相思豆毒素 (abrin)A鍵、莫迪素(modeccin)A鍵、α-帚麴菌素(alpha-sarcin)、油桐(J/ewr/ies 蛋白、康乃馨蛋白、洋商陸No. 5,079,233, 5,585,089, 5,606,040, 5,6937,62, 5,739,116, 5,767,285, 5,773,001). Cantuzumab mertansine, Immunogen, Inc., an antibody drug conjugate consisting of a huC242 antibody linked to a maytansinoid drug moiety (DM1) via a disulfide linker SPP, is developing To Phase II trials for the treatment of cancers that exhibit CanAg, such as colon cancer, pancreatic cancer, stomach cancer, and other cancers. MLN-2704 (Millennium Pharm., BZL Biologies, Immunogen Inc.), an antibody drug conjugate consisting of an anti-prostate specific membrane antigen (PSMA) monoclonal antibody linked to a maytansinoid drug moiety (DM1), positive It is under development for the potential treatment of prostate tumors. Auristatin peptide, Ollis lamp E (AE) and 142552.doc -91 - 201011047 monomethylauristatin (MMAE) (synthetic analog of sea rabbit toxin) line and embedded The monoclonal antibody cBR96 (specific for Lewis Y on cancer) and cACIO (specific for CD30 on hematological malignancies) bind (Doronina et al. (2003) Nature Biotechnology 21 (7): 778-784 And is in the process of treatment development. Chemotherapeutic agents suitable for use in generating immunoconjugates are described herein (e.g., above). The enzymatically active toxins and fragments thereof which can be used include: diphtheria A chain, non-binding active fragment of diphtheria toxin, exotoxin A chain (from Pseudomonas aeruginosa (Psewc/oAnowa®, marigold toxin A, acacia toxin) Abrin) A bond, modeccin A bond, alpha-sarcin, tung tree (J/ewr/ies protein, carnation protein, foreign commercial land)
awericawa)蛋白(PAPI、PAPII 及 PAP-S)、苦瓜 (momordica charantia)抑制劑、麻楓樹蛋白(curcin)、巴豆 毒蛋白(crotin)、肥專草(sapaonaria officinalis)抑制劑、天 堂果蛋白(gelonin)、有絲分裂素(mitogellin)、侷限麯黴素 (restrictocin)、盼黴素(phenomycin)、依諾徽素(enomycin) 及黴菌毒素(tricothecene)。參見例如1993年10月28曰公開 之WO 93/21232。各種放射性核種可用於產生放射性結合 抗體。實例包括212Bi、131I、131In、90Y及186Re。使用多種 雙官能蛋白偶合劑來製備抗體與細胞毒性劑之結合物,該 等雙官能蛋白偶合劑諸如:N-琥珀醯亞胺基-3-(2-吡啶基 二硫醇)丙酸酯(SPDP)、亞胺基硫雜環戊烷(IT)、醯亞胺酯 之雙官能衍生物(諸如己二醯亞胺酸二甲酯鹽酸鹽)、活性 酯類(諸如辛二酸二琥珀醯亞胺酯)、醛類(諸如戊二醛)、 142552.doc •92· 201011047 雙-疊氮基化合物(諸如雙_(對疊氮基苄醯基)己二胺)、雙_ 重氮鹽衍生物(諸如雙_(對重氮苄醯基)_乙二胺)、二異氰酸 酯類(諸如曱苯2,6·二異氰酸酯)及雙活性氟化合物(諸如 1,5-一氟-2,4-一硝基苯)。舉例而言,可如Vitetta等人, Science,238: 1098 (1987)中所述來製備蓖麻毒素免疫毒 素。經碳14標記之1·異硫氰氧基苄基_3_甲基二伸乙基三胺 五乙酸(MX-DTPA)為用於使放射性核苷酸與抗體結合之例 示性螯合劑。參見WO94/11026。 抗體與一或多種小分子毒素(諸如刺孢黴素、類美登 素、海兔毒素、奥利斯汀、單端孢黴豨族毒素及CC1065) 及該等毒素之具有毒素活性之衍生物的結合物亦涵蓋於本 文中。 i.美登素及類美登素 在一些實施例中,免疫結合物包含與一或多個類美登素 分子結合之本發明抗體(全長或片段)。Awericawa) protein (PAPI, PAPII and PAP-S), momordica charantia inhibitor, curcin, crotin, sapaonaria officinalis inhibitor, paradise fruit protein Gelonin), mitogen (mitogellin), restrictocin, phenomycin, enomycin, and trichothecene. See, for example, WO 93/21232, published October 28, 1993. Various radionuclides can be used to generate radiolabeled antibodies. Examples include 212Bi, 131I, 131In, 90Y, and 186Re. A combination of an antibody and a cytotoxic agent is prepared using a plurality of bifunctional protein couplers such as N-succinimide-3-(2-pyridyldithiol) propionate ( SPDP), iminothiolane (IT), bifunctional derivatives of sulfhydryl esters (such as dimethyl dimethyl imidate hydrochloride), active esters (such as diammonium suberate)醯imino ester), aldehydes (such as glutaraldehyde), 142552.doc •92· 201011047 bis-azido compounds (such as bis-(p-azidobenzylidene) hexamethylenediamine), bis-diazo Salt derivatives (such as bis(p-diazobenzyl)-ethylenediamine), diisocyanates (such as toluene 2,6. diisocyanate) and bis-active fluorine compounds (such as 1,5-fluoro-2) , 4-nitrobenzene). For example, ricin immunotoxin can be prepared as described in Vitetta et al, Science, 238: 1098 (1987). The carbon-14-labeled 1 isothiocyanatobenzyl-3-methyl-2-ethylidene pentaacetic acid pentaacetic acid (MX-DTPA) is an exemplary chelating agent for binding a radioactive nucleotide to an antibody. See WO94/11026. An antibody with one or more small molecule toxins (such as calicheamicin, maytansinoid, dolphin toxin, orlistin, trichothecene steroid toxin, and CC1065) and derivatives thereof having toxin activity The combination is also covered herein. i. Maytansine and Maytansinoid In some embodiments, the immunoconjugate comprises an antibody (full length or fragment) of the invention that binds to one or more maytansinoid molecules.
類美登素為有絲分裂抑制劑,其藉由抑制微管蛋白聚合 而起作用。美登素最先係自東非灌木齒葉美登木(east African shrub Maytenus serrata)分離得到(美國專利第 3,896,111號)。之後,發現某些微生物亦產生類美登素, 諸如美登醇(maytansinol)及C-3美登醇酯(美國專利第 4,151,042號)。例如,美國專利第 4,137,230號、第 4,248,870 號、第 4,256,746號、第 4,260,608號、第 4,265,814號、第 4,294,757號、第 4,307,016號、第 4,308,268號、第 4,308,269 號、第 4,309,428號、第 4,313,946號、第 4,315,929號、第 142552.doc -93- 201011047 4,317,821號、第 4,322,348號、第 4,331,598號、第 4,361,650 號、第 4,364,866號、第 4,424,219號、第 4,450,254號、第 4,362,663號及第4,371,533號中揭示合成美登醇及其衍生物 及類似物。 類美登素藥物部分為抗體藥物結合物中具吸引力之藥物 部分,此係因為其:(i)相對容易藉由醱酵或化學修飾或醱 酵產物之衍生作用來製備,(ii)適於以適合經由非雙硫鍵 連接子與抗體結合之官能基衍生化’(Hi)在血漿中穩定, 及(iv)對多種腫瘤細胞株有效。 含有類美登素之免疫結合物、製造其之方法及其治療用 途係揭示於(例如)美國專利第5,2〇8,〇20號、第5,416,064號 及歐洲專利EP 〇 425 235 B1中,其揭示内容以引用的方式 明確併入本文中。Liu等人,Proc. Natl. Acad. Sci. USA 918618-8623 (1996)描述包含與針對人類結腸直腸癌之單 株抗體C242連接之類美登素(命名為DM1)的免疫結合物。 發現該結合物對所培養之結腸癌細胞具有高度細胞毒性, 且在活體内腫瘤生長檢定中展示抗腫瘤活性。Chari等 人,Cancer Research 52:127-131(1992)描述其中類美登素 經由雙硫鍵連接子與結合人類結腸癌細胞株上之抗原的I 類抗體A7結合或與結合HER_2/neu致癌基因之另一氣類單 株k體ΤΑ. 1結合的免疫結合物。在活體外測試τα丨_類美 登素結合物對人類乳癌細胞株SK-BR-3(其每個細胞表現 3 X 1 〇個HER-2表面抗原)之細胞毒性《藥物結合物達成與 游離類美登素藥物類似程度之細胞毒性,此程度可藉由增 H2552.doc -94- 201011047 加每個抗體分子之類美登素分子的數目而增加。A7_類美 登素結合物在小鼠體内展示低全身性細胞毒性。 抗體-類美登素結合物係藉由以化學方法使抗體與類美 登素分子連接但不顯著降低抗體或類美登素分子之生物學 活性來製備。參見例如美國專利第5,2〇8,〇2〇號(其揭示内 容以引㈣方式明確#入本文中)。每個抗體分子結合平 均3至4個類美登素分子已展示增強對標靶細胞之細胞毒性 .力效而對抗體之魏或溶解性無負面影響,但預期甚至 一個分子之毒素/抗體即可增強細胞毒性,優於使用裸抗 體。類美登素在此項技術中係熟知的,且可藉由已知技術 合成或自天然來源分離。合適類美登素揭示於(例如)美國 • 專利第5,2G8,G2續及上讀及之其他專似料利公開案 . 巾。較佳類美登素為美登醇及在美登醇分子之芳族環或其 他位置處經修飾之美登醇類似物,諸如各種美登醇酯。 此項技術中已知多種用於製造抗體_類美登素結合物 %之連接基團,包括例如美國專利第5,2〇8,020號或歐洲專利 0 425 235 Bl^Chari^A > Cancer Research 52:127-131(1992) 及2004年10月8日申請之美國專利申請案第ι〇/96〇 6〇2號 (其揭示内容以引用的方式明確併入本文中)中所揭示之彼 等連接基團。可如2004年10月8曰申請之美國專利申請案 第1 〇/960,602號中所揭示來製備包含連接子組分sMc(:之抗 體-類美登素結合物。連接基團包括如以上指出之專利中 所揭示之雙硫基、硫謎基、酸不穩定性基團、光不穩定性 基團、肽酶不穩定性基團或酷酶不穩定性基團,其中雙硫 142552.doc •95· 201011047 基及硫醚基係較佳的。本文中描述且例示其他連接基圏。 抗體與類美登素之結合物可使用多種雙官能蛋白偶合劑 來製造,該等雙官能蛋白偶合劑諸如為N_琥珀醯亞胺基_ 3-(2-吡啶基二硫基)丙酸酯(SPDP)、琥珀醯亞胺基_4_(]^_順 丁稀二酿亞胺基甲基)環己院曱酸酯(SMCC)、亞胺基硫 雜環戊烷(IT)、醯亞胺酯之雙官能衍生物(諸如己二醯亞胺 酸二甲酯鹽酸鹽)、活性酯(諸如辛二酸二琥珀醯亞胺酯)、 搭類(諸如戊一酸)、雙疊氮基化合物(諸如雙(對疊氮基苄 醯基)己二胺)、雙-重氮鹽衍生物(諸如雙(對重氮鹽苄醯 基)-乙二胺)、二異氰酸酯(諸如甲苯2,6_二異氰酸酯)及雙 活性氟化合物(諸如1,5-二氟-2,4-二硝基苯)。尤其較佳之 偶合劑包括N-琥珀醯亞胺基_3_(2_吡啶基二硫基)丙酸酯 (SPDP)(Carlsson等人,Biochem. J. 173:723-737 (1978))及 N-琥珀酿亞胺基-4-(2-吡啶基硫基)戊酸酯(spp)以提供雙硫 鍵。 視連接類型而定,可使連接子於各個位置處與類美登素 分子連接。舉例而言,可使用習知偶合技術藉由與羥基反 應而形成酯鍵。反應可發生在具有羥基之c_3位置、經羥 甲基修飾之C-14位置、經羥基修飾之c_15位置及具有羥基 之C-20位置上。在一較佳實施例中,在美登醇或美登醇類 似物之C-3位置處形成鍵聯。 U·奥利斯汀及海兔毒素 在某些實施例中,免疫結合物包含與海兔毒素或海兔毒 素狀類似物及衍生物奥利斯汀結合之本發明抗體(美國專 242552.doc •96- 201011047 利第5,635,483號及第5,780,588號)。已展示海兔毒素及奥 利斯汀干擾微管動力學、GTP水解及核與細胞分離(Woyke 等人(2001) Antimicrob· Agents and Chemother. 45(12):3580-3584) 及具有抗癌(美國專利第5,663,149號)及抗真菌活性(Pettit 等人,(1998) Antimicrob·'Agents Chemother. 42:2961-2965)。 海兔毒素或奥利斯汀藥物部分可經肽藥物部分之N (胺基) 末端或C(羧基)末端連接至抗體(WO 02/088172)。Maytansin is a mitotic inhibitor that acts by inhibiting tubulin polymerization. Maytansin was first isolated from the East African shrub Maytenus serrata (U.S. Patent No. 3,896,111). Later, certain microorganisms were also found to produce maytansinoids, such as maytansinol and C-3 maytansinol (U.S. Patent No. 4,151,042). For example, U.S. Patent Nos. 4,137,230, 4,248,870, 4,256,746, 4,260,608, 4,265,814, 4,294,757, 4,307,016, 4,308,268, 4,308,269, 4,309,428, 4,313,946, No. 4,315,929, 142,552.doc-93-201011047 4,317,821, 4,322,348, 4,331,598, 4,361,650, 4,364,866, 4,424,219, 4,450,254, 4,362,663, and 4,371,533 Synthetic maytansinol and its derivatives and analogs are disclosed. The maytansinoid moiety is an attractive drug moiety in an antibody drug conjugate because it is: (i) relatively easy to prepare by fermentation or chemical modification or derivatization of the fermentation product, (ii) suitable Derivatization of a functional group suitable for binding to an antibody via a non-disulfide bond linker '(Hi) is stable in plasma, and (iv) is effective against a plurality of tumor cell lines. An immunoconjugate comprising a maytansinoid, a method of making the same, and a therapeutic use thereof are disclosed, for example, in U.S. Patent Nos. 5,2,8, 〇20, 5,416,064 and European Patent EP 〇425 235 B1. The disclosure is expressly incorporated herein by reference. Liu et al, Proc. Natl. Acad. Sci. USA 918618-8623 (1996) describe immunoconjugates comprising maytansine (designated DM1) linked to monoclonal antibody C242 against human colorectal cancer. The conjugate was found to be highly cytotoxic to the cultured colon cancer cells and exhibited anti-tumor activity in an in vivo tumor growth assay. Chari et al, Cancer Research 52: 127-131 (1992) describe the binding of maytansinoid to a class I antibody A7 that binds to an antigen on a human colon cancer cell line via a disulfide bond linker or to a HER_2/neu oncogene. Another gas-type single-body k-body ΤΑ. 1 combined immunoconjugate. To test the cytotoxicity of the τα丨_maytansin conjugate on human breast cancer cell line SK-BR-3 (each of which exhibits 3 X 1 HER HER-2 surface antigen) in vitro. A similar degree of cytotoxicity of the maytansinoid drug can be increased by increasing the number of maytansine molecules per antibody molecule by increasing H2552.doc-94-201011047. The A7_classendensin conjugate exhibits low systemic cytotoxicity in mice. The antibody-maytansin conjugate is prepared by chemically linking an antibody to a maytansinoid molecule without significantly reducing the biological activity of the antibody or maytansinoid molecule. See, for example, U.S. Patent No. 5,2,8, 〇 2 ( (the disclosure of which is incorporated herein by reference). Each antibody molecule binds an average of 3 to 4 maytansinoid molecules that have been shown to enhance cytotoxicity against the target cells. The effect is not negatively affected by the antibody's Wei or solubility, but even one molecule of toxin/antibody is expected It enhances cytotoxicity and is superior to the use of naked antibodies. Maytansin is well known in the art and can be synthesized by known techniques or isolated from natural sources. Appropriate mayonoids are disclosed, for example, in the United States • Patent No. 5, 2G8, G2 Continuation and Reading and other specific disclosures. Preferred maytansinoids are maytansinol and modified maytansinoids, such as various maytansinol esters, modified at the aromatic ring of the maytansinol group or other positions. A variety of linking groups are known in the art for the manufacture of antibody-type maytansin conjugates, including, for example, U.S. Patent No. 5,2,8,020 or European Patent 0 425 235 Bl^Chari^A > Cancer Research U.S. Patent Application Serial No. </RTI> </ RTI> <RTIgt; </ RTI> <RTIgt; </ RTI> <RTIgt; </ RTI> </ RTI> <RTIgt; And other linking groups. The inclusion of the linker component sMc (the antibody-maytansin conjugate) can be prepared as disclosed in U.S. Patent Application Serial No. 1/960,602, the entire disclosure of which is incorporated by reference. a disulfide group, a sulfur group, an acid labile group, a photolabile group, a peptidase labile group or a cool enzyme labile group disclosed in the patent, wherein the disulfide 142552.doc • 95· 201011047 The base and thioether group are preferred. Other linkers are described and exemplified herein. The combination of an antibody and a maytansinoid can be made using a variety of bifunctional protein couplers, such bifunctional protein couples. The mixture is, for example, N_amber quinone imino 3-(2-pyridyldithio)propionate (SPDP), amber quinone imine _4_(]^_cis-butyl di-iminomethyl a cyclohexyl phthalate (SMCC), an imidothiolane (IT), a difunctional derivative of a quinone imide (such as dimethyl dimethyl imidate hydrochloride), an active ester (such as disuccinimide suberate), complexes (such as valeric acid), bis-azido compounds (such as bis(p-azidobenzyl hydrazine) Hexamethylenediamine), bis-diazonium salt derivatives (such as bis(p-diazonium bromide)-ethylenediamine), diisocyanates (such as toluene 2,6-diisocyanate), and bis-active fluorine compounds (such as 1,5-Difluoro-2,4-dinitrobenzene. Particularly preferred coupling agents include N-succinimide _3_(2-pyridyldithio)propionate (SPDP) (Carlsson et al. Human, Biochem. J. 173: 723-737 (1978)) and N-succinyl imino-4-(2-pyridylthio)pentanoate (spp) to provide a disulfide bond. The linker can be linked to the maytansinoid molecule at various positions. For example, a conventional coupling technique can be used to form an ester bond by reacting with a hydroxyl group. The reaction can occur at the c_3 position having a hydroxyl group, via hydroxy group. The methyl-modified C-14 position, the hydroxyl-modified c-15 position, and the C-20 position having a hydroxyl group. In a preferred embodiment, the C-3 position of the maytansinol or maytansinoid analog is formed. Bonding. U. Orlistin and Dolphin Toxins In certain embodiments, the immunoconjugate comprises an ornithine-like analog and a derivative of the dolastatin The antibody of the present invention (US 242552.doc • 96-201011047, Nos. 5, 635, 483 and 5, 780, 588) has shown that the rabbit toxin and orlistin interfere with microtubule dynamics, GTP hydrolysis and nuclear and cell separation (Woyke et al. Human (2001) Antimicrob·Agents and Chemother. 45(12): 3580-3584) and has anticancer (U.S. Patent No. 5,663,149) and antifungal activity (Pettit et al., (1998) Antimicrob·'Agents Chemother. 42: 2961-2965). The dolastatin or orlistin drug moiety can be attached to the antibody via the N (amino) terminus or C (carboxyl) terminus of the peptide drug moiety (WO 02/088172).
例示性奥利斯汀實施例包括2004年11月5日申請之美國 專利連續案第 10/983,340號[Monomethylvaline Compounds Capable of Conjugation to Ligands]中所揭示之N末端連接 之單甲基奥利斯汀藥物部分DE及DF,其揭示内容以全文 引用的方式明確併入本文中。 肽基藥物部分一般可藉由在兩個或兩個以上胺基酸及/ 或肽片段之間形成肽鍵來製備。該等肽鍵例如可根據肽化 學領域中熟知之液相合成方法(參見E. Schr6der及K. Ltibke,[The Peptides]第 1 卷,第 76-136 頁,1965,Academic Press)來製備。奥利斯汀/海兔毒素藥物部分可根據美國專 利第 5,635,483號及第 5,780,588號;Pettit等人,(1989)·!· Am. Chem. Soc. 111:5463-5465 ; Pettit等人,(1998)入11以-Cancer Drug Design 13:243-277 ; Pettit,G.R.等人, Synthesis, 1996,719-725 及 Pettit 等人,(1996) J. Chem. Soc. Perkin Trans. 1 5:859-863 之方法來製備。亦參見 2005 年 10 月 27 曰公開之 Doronina (2003) Nat. Biotechnol. 21(7):778-784 ; [Monomethylvaline Compounds Capable of 142552.doc -97- 201011047Illustrative orlistin embodiments include N-terminally linked monomethyl orlistin disclosed in Monomethylvaline Compounds Capable of Conjugation to Ligands, U.S. Patent Application Serial No. 10/983,340, filed on Nov. 5, 2004. The drug portions DE and DF, the disclosures of which are expressly incorporated herein by reference in their entirety. Peptidyl drug moieties can generally be prepared by forming peptide bonds between two or more amino acids and/or peptide fragments. Such peptide bonds can be prepared, for example, according to liquid phase synthesis methods well known in the art of peptide chemistry (see E. Schr6der and K. Ltibke, [The Peptides], Vol. 1, pp. 76-136, 1965, Academic Press). The Ollistin/Dolphin toxin drug portion can be based on U.S. Patent Nos. 5,635,483 and 5,780,588; Pettit et al., (1989)·!· Am. Chem. Soc. 111:5463-5465; Pettit et al., (1998) ) 11 to - Cancer Drug Design 13: 243-277; Pettit, GR et al, Synthesis, 1996, 719-725 and Pettit et al, (1996) J. Chem. Soc. Perkin Trans. 1 5: 859-863 The method is to prepare. See also October 27, 2005 曰 published by Doronina (2003) Nat. Biotechnol. 21(7): 778-784; [Monomethylvaline Compounds Capable of 142552.doc -97- 201011047
Conjugation to Ligands] US20050238649,其以全文引用的 方式併入本文中(例如揭示連接子及製備與連接子結合之 單甲基纈胺酸化合物(諸如MMAE及MMAF)的方法)。Conjugation to Ligands, US20050238649, which is incorporated herein by reference in its entirety, for example, the disclosure of the <RTIgt;</RTI> </ RTI> </ RTI> </ RTI> </ RTI> </ RTI> </ RTI> </ RTI> <RTIgt;
Hi、刺孢黴素 在其他實施例中,免疫結合物包含與一或多個刺孢黴素 分子結合之本發明抗體。抗生素之刺孢黴素家族能夠產生 亞皮莫耳濃度之雙股DNA斷裂。關於刺孢黴素家族結合物 之製備,參見美國專利第5,712,374號、第5,714,586號、第 5,739,116 號、第 5,767,285 號、第 5,770,701 號、第 5,770,710號、第5,773,001號及第5,877,296號(所有專利均 屬於American Cyanamid Company)。可使用之刺孢黴素結 構類似物包括(但不限於)γ,1、《21、α,、N_乙醯基τγ/、 PSAG 及 e^Hinman 等人,Cancer Research 53:3336-3342 (1993),Lode等人,Cancer Research 58:2925-2928 (1998) 及上文提及之屬於American Cyanamid之美國專利)。抗體 可結合之另一抗腫瘤藥物為QFA,其係抗葉酸劑。刺孢黴 素與QFA兩者均具有細胞内作用位點且不易於穿過質膜。 因此,經抗體介導之内化作用細胞吸收該等藥劑大幅增強 其細胞毒素效應。 iv.其他細胞毒性劑 可結合本發明抗體之其他抗腫瘤劑包括BCNU、鏈佐黴 素(streptozoicin)、長春新鹼及5_氟尿嘧啶、美國專利第 5,053,394號及第5,770,710號中所述之已知總稱為ll_ E33288複合物之藥劑家族以及埃斯培拉黴素(美國專利第 142552.doc -98- 201011047 5,877,296號)。 可使用之酶促活性毒素及其片段包括白喉A鏈、白喉毒 素之非結合活性片段、外毒素八鏈(來自綠膿桿菌)、蓖麻 毒素A鏈、相思豆毒素a鏈、莫迪素a鏈、α_帚麴菌素、油 桐蛋白、康乃馨蛋白、洋商陸蛋白(pApi、pApu及ρΑρ_ S)、苦瓜抑制劑、麻楓樹蛋白、巴豆毒素、鼠尾草抑制 劑、白樹素、有絲分裂素、侷限麴菌素、酚黴素、伊諾黴Hi, calicheamicin In other embodiments, the immunoconjugate comprises an antibody of the invention that binds to one or more calicheamicin molecules. The coccimycin family of antibiotics is capable of producing double-strand DNA breaks at a sub-picumer concentration. For the preparation of the conjugates of the calicheamicin family, see U.S. Patent Nos. 5,712,374, 5,714,586, 5,739,116, 5,767,285, 5,770,701, 5,770,710, 5,773,001 and 5,877,296 (all patents) All belong to American Cyanamid Company). Structural analogs of calicheamicin that can be used include, but are not limited to, gamma 1, 1, 21, alpha, N-ethylidene tau/, PSAG, and e^Hinman et al, Cancer Research 53: 3336-3342 ( 1993), Lode et al., Cancer Research 58: 2925-2928 (1998) and the aforementioned U.S. patent to American Cyanamid). Another anti-tumor drug that the antibody can bind to is QFA, which is an anti-folate agent. Both lutein and QFA have intracellular sites of action and are not susceptible to crossing the plasma membrane. Thus, antibody-mediated internalization of cells absorbing these agents greatly enhances their cytotoxic effects. Iv. Other cytotoxic agents Other anti-tumor agents that can be combined with the antibodies of the invention include BCNU, streptozoicin, vincristine, and 5-fluorouracil, as described in U.S. Patent Nos. 5,053,394 and 5,770,710. A family of agents of the ll_E33288 complex and Esperazine (U.S. Patent No. 142,552.doc-98-201011047, 5,877,296). Enzymatically active toxins and fragments thereof which may be used include diphtheria A chain, non-binding active fragment of diphtheria toxin, exotoxin octapeptide (from Pseudomonas aeruginosa), ricin A chain, abrin toxin a chain, Modizin a Chain, α-pyromycin, tung tree protein, carnation protein, foreign commercial protein (pApi, pApu and ρΑρ_ S), bitter melon inhibitor, hema protein, croton toxin, sage inhibitor, white matter, mitosis , limited, bacteriocin, phenolic acid, enamel
素及黴菌毒素。參見例如1993年10月28日公開之W〇 93/21232 。 本發明另外涵蓋一種在抗體與具有核分解活性之化合物 (例如核糖核酸酶或DNA核酸内切酶,諸如脫氧核糖核酸 6# (DNase))之間形成的免疫結合物。 為選擇性地破壞腫瘤,抗體可包含高度放射性原子。多 種放射性同位素可用於產生放射性結合之抗體。實例包括 At2"、I⑴、ι125、γ9〇、ReI86、以188、sml53、出212、p32、And mycotoxins. See, for example, W〇 93/21232, published on October 28, 1993. The invention further encompasses an immunoconjugate formed between an antibody and a compound having nuclear degrading activity, such as a ribonuclease or a DNA endonuclease such as deoxyribonucleic acid 6# (DNase). To selectively destroy a tumor, the antibody can comprise a highly radioactive atom. A variety of radioisotopes are available for the production of radiolabeled antibodies. Examples include At2", I(1), ι125, γ9〇, ReI86, 188, sml53, 212, p32,
Pb及以之放射性同位素。當結合物用於偵測時,其可包 含用於閃爍攝影術研究之放射性原子(例如比9^*。23)或用 於核磁共振(NMR)成像(亦稱為磁共振成像,瓜屮之自旋標 s己,諸如碘-123(再次)、碘-131、銦_1U、氟_19、碳_13、 氮-15、氧-17、亂、猛或鐵。 可以已知方式將放射性標記或其他標記併入結合物中。 舉例而言,可經生物方式合成肽,或可藉由使用合適胺基 酸前驅體(例如包含以氟-19代替氫)進行化學胺基酸合成來 合成肽。諸如Tc99m或P23、Re】86、Rei88及Inm之標記可經 142552.doc •99- 201011047 由肽中之半胱胺酸殘基連接。釔-90可經由離胺酸殘基連 接。可使用 IODOGEN 方法(Fraker 等人(1978) Biochem. Biophys· Res. Commun· 80: 49-57)來併入蛾-123。 [Monoclonal Antibodies in Immuno sc inti graphy] (Chat al, CRC Press 1989)詳細描述其他方法。 抗體與細胞毒性劑之結合物可使用多種雙官能蛋白偶合 劑來製造,該等雙官能蛋白偶合劑諸如為N-琥珀醯亞胺 基-3-(2-吡啶基二硫基)丙酸酯(SPDP)、琥珀醯亞胺基-4-(N-順丁烯二醯亞胺基甲基)環己烷-1-甲酸酯(SMCC)、亞 胺基硫雜環戊烷(IT)、醯亞胺酯之雙官能衍生物(諸如己二 醯亞胺酸二曱酯鹽酸鹽)、活性酯(諸如辛二酸二琥珀醯亞 胺酯)、醛類(諸如戊二醛)、雙-疊氮基化合物(諸如雙-(對 疊氮基苄醯基)己二胺)、雙-重氮鹽衍生物(諸如雙-(對重氮 鹽苄醯基)-乙二胺)、二異氰酸酯(諸如曱苯2,6-二異氰酸 酯)及雙活性氟化合物(諸如1,5-二氟-2,4-二硝基苯)。舉例 而言,蓖麻毒素免疫毒素可如Vitetta等人,Science 238:1098 (1987)中所述來製備。經碳14標記之1-異硫氰氧 基苄基-3-甲基二伸乙基三胺五乙酸(MX-DTPA)為用於使放 射性核苷酸與抗體結合之例示性螯合劑。參見 WO94/11026。連接子可為有助於細胞中細胞毒素藥物釋 放之「可分裂連接子」。舉例而言,可使用酸不穩定性連 接子、肽酶敏感性連接子、光不穩定性連接子、二甲基連 接子或含二硫化物之連接子(Chari等人’ Cancer Research 52:127-131 (1992);美國專利第 5,208,020號)。 142552.doc -100- 201011047 本發明之化合物明確涵蓋(但不限於)用以下市售(例如購 自 Pierce Biotechnology,Inc·,Rockford,IL.,U.S.A)之交聯 試劑製備的入0(::3厘?8、£]\408、〇]^68、1^¥8、:1:(:-SMCC、MBS、MPBH、SBAP、SIA、SIAB、SMCC、 SMPB、SMPH、磺酸基-EMCS、磺酸基-GMBS、磺酸基-KMUS、磺酸基-MBS、磺酸基-SIAB、磺酸基-SMCC及磺 酸基-SMPB及SVSB(琥珀醯亞胺基-(4-乙烯砜)苯曱酸酯)。 參見第 467-498 頁,2003-2004 Applications Handbook and mm ww Catalog。 v.製備抗體藥物結合物Pb and its radioisotope. When the conjugate is used for detection, it may contain radioactive atoms for scintigraphy studies (eg, 9^*.23) or for nuclear magnetic resonance (NMR) imaging (also known as magnetic resonance imaging, melon Spin label, such as iodine-123 (again), iodine-131, indium_1U, fluorine_19, carbon-13, nitrogen-15, oxygen-17, chaos, violent or iron. Radioactivity can be known in a known manner A label or other label is incorporated into the conjugate. For example, the peptide can be synthesized biologically, or can be synthesized by chemical amino acid synthesis using a suitable amino acid precursor (eg, comprising fluorine instead of hydrogen) Peptides such as Tc99m or P23, Re 86, Rei88 and Inm can be linked by a cysteine residue in the peptide via 142552.doc • 99- 201011047. 钇-90 can be linked via an lysine residue. The IODOGEN method (Fraker et al. (1978) Biochem. Biophys. Res. Commun. 80: 49-57) was used to incorporate moth-123. [Monoclonal Antibodies in Immuno sc intigraphy] (Chat al, CRC Press 1989) Other methods. Combinations of antibodies and cytotoxic agents can use a variety of bifunctional protein coupling agents. The bifunctional protein coupling agents are, for example, N-succinimide-3-(2-pyridyldithio)propionate (SPDP), amber quinone-4-(N-cis-butene) A difunctional derivative of an enediminoimidomethyl)cyclohexane-1-carboxylate (SMCC), an imidothiolane (IT), or a quinone imide (such as hexamethylenediamine) Dioxalate hydrochloride), active esters (such as disuccinimide suberate), aldehydes (such as glutaraldehyde), bis-azido compounds (such as bis-(p-azidobenzylhydrazine) Hexamethylenediamine), bis-diazonium salt derivatives (such as bis-(p-diazonium bromide)-ethylenediamine), diisocyanates (such as toluene 2,6-diisocyanate) and double active fluorine Compounds such as 1,5-difluoro-2,4-dinitrobenzene. For example, a ricin immunotoxin can be prepared as described in Vitetta et al., Science 238: 1098 (1987). 14-labeled 1-isothiocyanatobenzyl-3-methyldiethylidamine pentaacetic acid (MX-DTPA) is an exemplary chelating agent for binding radionucleotides to antibodies. See WO94/ 11026. The linker can help to fine cells a "cleavable linker" released by a toxin drug. For example, an acid labile linker, a peptidase-sensitive linker, a photolabile linker, a dimethyl linker or a disulfide-containing link may be used. (Chari et al. 'Clinic Research 52: 127-131 (1992); U.S. Patent No. 5,208,020). 142552.doc -100- 201011047 The compounds of the present invention expressly encompass, but are not limited to, the incorporation of the following commercially available cross-linking reagents (e.g., from Pierce Biotechnology, Inc., Rockford, IL., USA) into the 0 (:: 3 PCT? 8, £]\408, 〇]^68, 1^¥8,: 1: (:-SMCC, MBS, MPBH, SBAP, SIA, SIAB, SMCC, SMPB, SMPH, sulfonic acid-EMCS, sulfonate-GMBS, sulfonate-KMUS, sulfonate-MBS, sulfonate-SIAB, sulfonate-SMCC and sulfonate-SMPB and SVSB (amber quinone-amino-(4-vinyl sulfone) Benzoate) See pages 467-498, 2003-2004 Applications Handbook and mm ww Catalog. v. Preparation of antibody drug conjugates
在本發明之抗體藥物結合物(ADC)中,抗體(Ab)經由連 接子(L)與一或多個藥物部分(D)結合,例如每個抗體結合 約1至約20個藥物部分。式I之ADC可藉由若干途徑採用熟 習此項技術者已知之有機化學反應、條件及試劑來製備, 包括:(1)抗體之親核性基團與二價連接子試劑經由共價鍵 反應以形成Ab-L,繼而與藥物部分D反應;及(2)藥物部分 之親核性基團與二價連接子試劑經由共價鍵反應以形成D-L,繼而與抗體之親核性基團反應。本文中描述製備ADC 之其他方法。In the antibody drug conjugate (ADC) of the invention, the antibody (Ab) binds to one or more drug moieties (D) via a linker (L), e.g., from about 1 to about 20 drug moieties per antibody. The ADC of Formula I can be prepared by a number of routes using organic chemical reactions, conditions, and reagents known to those skilled in the art, including: (1) nucleophilic groups of antibodies and bivalent linker reagents via covalent bond reactions To form Ab-L, which in turn reacts with drug moiety D; and (2) the nucleophilic group of the drug moiety reacts with the divalent linker reagent via a covalent bond to form DL, which in turn reacts with the nucleophilic group of the antibody . Other methods of preparing ADCs are described herein.
Ab-(L-D)p I 連接子可由一或多種連接子組分組成。例示性連接子組 分包括6-順丁烯二醯亞胺基己醯基(「MC」)、順丁烯二醯 亞胺基丙醯基(「MP」)、顯胺酸-瓜胺酸(「val-cit」)、丙 胺酸-苯丙胺酸(「ala-phe」)、對胺基苄氧羰基 142552.doc -101 - 201011047 (pAB」)、4-(2-吡啶基硫基)戊酸N-琥珀醯亞胺g旨 (「SPP」)、4-(N-順丁烯二醯亞胺基甲基)環己烷_丨-甲酸 N-號拍醯亞胺酯(r SMCC」)及(4_碘-乙醯基)胺基苯甲酸 N-玻轴酿亞胺酯(「SIAB」p額外之連接子組分已為此項 技術中所知且一些描述於本文中。亦參見2〇〇4年u月5日 申請之[Monomethylvaline Compounds Capable of Conjugation toThe Ab-(L-D)p I linker can be composed of one or more linker components. Exemplary linker components include 6-maleimide hexamethylene fluorenyl ("MC"), maleimide propyl thiol ("MP"), leucine-citrulline ("val-cit"), alanine-phenylalanine ("ala-phe"), p-aminobenzyloxycarbonyl 142552.doc -101 - 201011047 (pAB"), 4-(2-pyridylthio)penta Acid N-succinimide g ("SPP"), 4-(N-methylene-2-imidazolylmethyl)cyclohexane-indole-formic acid N-coded imidate (r SMCC) And (4_iodo-ethinyl)aminobenzoic acid N-glass-baked imine ester ("SIAB" p additional linker component is known in the art and some are described herein. See [Monomethylvaline Compounds Capable of Conjugation to [5]
Ligands]美國專利連續案第10/983,34〇號,其内容以全文引 用的方式併入本文中。 在一些實施例中,連接子可包含胺基酸殘基。例示性胺 基酸連接子組分包括二肽、三肽、四肽或五肽。例示性二 肽包括:綠胺酸-瓜胺酸(vc4 val_cit)、丙胺酸-苯丙胺酸 (af或ala-phe)。例示性三肽包括:甘胺酸_纈胺酸-瓜胺酸 (gly-val-cit)及甘胺酸-甘胺酸-甘胺酸(giy_gly_gly)。包含 胺基酸連接子組分之胺基酸殘基包括天然產生之胺基酸以 及次要胺基酸及非天然產生之胺基酸類似物,諸如瓜胺 酸。可對胺基酸連接子組分進行設計且優化其對特定酶 (例如腫瘤相關蛋白酶、組織蛋白酶B、c及D或纖溶酶蛋 白酶)之酶促裂解的選擇性。 抗體上之親核性基團包括(但不限於):(i)N末端胺基; (ii)側鏈胺基,例如離胺酸;(出)側鏈硫醇基,例如半胱胺 酸;及(IV)糖羥基或胺基,在該等糖羥基或胺基處抗體經 糖基化。胺、硫醇及經基係親核性的且能夠與連接子部分 及包括以下各物之連接子試劑上的親電子基團反應以形成 共價鍵:(Ο活性酯類,諸如NHS酯、HOBt酯、鹵代甲酸 142552.doc •102· 201011047 醋及酸鹵化物;(ii)烷基及节基齒化物,諸如_乙醯胺; (iii)搭類、酮類、羧基及順丁烯二醯亞胺基團。某些抗體 具有可還原之鏈間雙硫鍵,亦即半胱胺酸橋。可藉由用諸 如DTT(二硫蘇糖醇)之還原劑處理而使抗體具有與連接子 試劑結合之反應性。因此,理論上各半胱胺酸橋將形成兩 個反應性硫醇親核體。可經由使離胺酸與2_亞胺基硫雜環 戊烷(Traut試劑)反應而使胺轉化為硫酵,從而將額外之親 n 核性基團引入抗體中。可藉由引入一個、兩個、三個、四 •❿個或四個以上半胱胺酸殘基將反應性硫酵基®引入抗體 (或其片段)中(例如製備包含一或多個非天然半胱胺酸胺基 酸殘基之突變抗體)。 本發明之抗體藥物結合物亦可藉由修飾抗體以引入可與 ' 連接子試劑或藥物上之親核性取代基反應之親電子部分而 產生。可將糖基化抗體之糖以(例如)過碘酸鹽氧化試劑氧 化以形成可與連接子試劑或藥物部分之胺基反應的醛基或 酮基。所得亞胺希夫鹼(Sehiff base)基團可形成穩定鍵, 或可(例如)經硼氫化物試劑還原以形成穩定胺鍵。在一項 實施例中,糖基化抗體之碳水化合物部分與半乳糖氧化酶 或偏過碘酸鈉之反應可在蛋白中產生可與藥物上之適當基 團反應的綠基(經基及酮基)(Hermans〇n,Bi〇conjUgate Techniques)。在另一項實施例中,含有\末端絲胺酸或蘇 胺酸殘基之蛋白可與偏過碘酸鈉反應,從而產生醛而非第 I* 基酸(Geoghegan & Stroh,(1992) Bioconjugate Chem. 3:138-146 ;美國專利第5,362,852號)。該醛可與藥物部分 142552.doc •103- 201011047 或連接子親核體反應。 同樣,藥物部分上之親核性基團包括(但不限於):胺、 硫醇、羥基、醯肼、肟、肼、硫半卡巴腙、肼羧酸酯基及 芳基醯肼基團,其能夠與連接子部分及包括以下各物之連 接子試劑上的親電子基團反應以形成共價鍵:⑴活性酯 類,諸如NHS酯、HOBt酯、齒代甲酸酯及酸_化物;(Η) 烷基及苄基鹵化物,諸如鹵乙醯胺;(iii)醛類、酮類、羧 基及順丁烯二醯亞胺基團。 或者’包含抗體及細胞毒性劑之融合蛋白可例如藉由重 組技術或肽合成來製造。DNA長度可包含編碼彼此相鄰或 由編碼連接子肽之區隔開(其不會破壞所需結合物特性)之 結合物的兩部分之各別區。 在又一項實施例中,抗體可與「受體」(諸#抗生蛋白 鏈菌素)結合以用於腫瘤預靶向,其中向個體投與抗體-受 體結合物,繼而使用清除劑自循環中移除未結合之結合物 且隨後投與與細胞毒性劑(例如放射性核苷酸)結合之「配 位體」(例如抗生物素蛋白(avidin))。 醫藥調配物 藉由將具有所需純度之抗體與生理學上可接受之可選章 劑賦形劑或穩定劑;昆合(心历咖〜㈣⑽ 斤⑽·心/PW败;^20版(2_))而以水溶液、;東乾調酿 物或其他乾燥調配物之形式來製備包含本發明抗體之治痛 性調配物以供料。在所採用之劑量及濃度下,可接受之 載劑、賦形劑或穩定劑對接受者無毒,且包括緩衝劑,諸 142552.doc -104- 201011047 如磷酸鹽、檸檬酸鹽、組胺酸及其他有機酸;抗氧化劑, 包括抗壞血酸及甲硫胺酸;防腐劑(諸如氣化十八烷基二 甲基苄基銨;氣化六烴季銨(hexameth〇nium chi〇ride广氯 化苯甲烴敍(benzalkonium chloride);节索氯链Ligands, U.S. Patent Serial No. 10/983,34, the entire contents of which is incorporated herein by reference. In some embodiments, the linker can comprise an amino acid residue. Exemplary amino acid linker components include dipeptides, tripeptides, tetrapeptides or pentapeptides. Exemplary dipeptides include: phytic acid-citrulline (vc4 val_cit), alanine-phenylalanine (af or ala-phe). Exemplary tripeptides include: glycine-glycine-glycine (gly-val-cit) and glycine-glycine-glycine (giy_gly_gly). Amino acid residues comprising an amino acid linker component include naturally occurring amino acids and minor amino acids and non-naturally occurring amino acid analogs such as citrulline. The amino acid linker component can be designed and optimized for its selectivity for enzymatic cleavage of specific enzymes such as tumor-associated proteases, cathepsins B, c and D or plasminogenase. Nucleophilic groups on the antibody include, but are not limited to, (i) an N-terminal amine group; (ii) a side chain amine group, such as an amine acid; (a) a side chain thiol group, such as cysteine And (IV) a saccharide hydroxyl or amine group at which the antibody is glycosylated. An amine, a thiol, and a nucleophilic group are capable of reacting with an electrophilic group on a linker moiety and a linker reagent comprising the following: to form a covalent bond: (an active ester such as an NHS ester, HOBt ester, haloformic acid 142552.doc •102· 201011047 vinegar and acid halide; (ii) alkyl and nodal dentate, such as _acetamide; (iii) conjugate, ketone, carboxyl and cis-butene Diterpenoid imine group. Some antibodies have a reducible interchain disulfide bond, ie a cysteine bridge. The antibody can be treated by treatment with a reducing agent such as DTT (dithiothreitol). The reactivity of the linker reagents is combined. Therefore, theoretically each cysteine bridge will form two reactive thiol nucleophiles. This can be achieved by making the lysine and the 2-iminothiolane (Traut reagent). The reaction converts the amine to thiol to introduce additional pro-nuclear groups into the antibody by introducing one, two, three, four or four or more cysteine residues Introducing a reactive thiol group into an antibody (or a fragment thereof) (eg, preparing one or more non-natural cysteamine amines) Mutant antibody of a base acid residue) The antibody drug conjugate of the present invention can also be produced by modifying an antibody to introduce an electrophilic moiety reactive with a nucleophilic substituent on a linker reagent or drug. The sugar of the antibody of the antibody is oxidized by, for example, a periodate oxidizing reagent to form an aldehyde group or a ketone group which can react with the amine group of the linker reagent or the drug moiety. The obtained imine Scheiff base group can be Forming a stable bond, or may be reduced, for example, by a borohydride reagent to form a stable amine bond. In one embodiment, the carbohydrate moiety of the glycosylated antibody is reacted with galactose oxidase or sodium metaperiodate. Producing a green group (Hermans〇n, Bi〇conjUgate Techniques) in the protein that reacts with a suitable group on the drug. In another embodiment, it contains a \terminal leucine or a sulphate The protein of the amino acid residue can be reacted with sodium metaperiodate to produce an aldehyde instead of the I* group acid (Geoghegan & Stroh, (1992) Bioconjugate Chem. 3: 138-146; U.S. Patent No. 5,362,852). The aldehyde can be combined with the drug moiety 142552. Doc •103- 201011047 or linker nucleophile reaction. Similarly, nucleophilic groups on the drug moiety include, but are not limited to: amines, thiols, hydroxyls, hydrazines, hydrazines, hydrazines, thioscarbazide, An oxime carboxylate group and an aryl sulfonium group capable of reacting with a linker moiety and an electrophilic group on a linker reagent comprising the following: to form a covalent bond: (1) an active ester such as an NHS ester, HOBt esters, tooth-formates and acid-based compounds; (Η) alkyl and benzyl halides, such as haloacetamide; (iii) aldehydes, ketones, carboxyl groups and maleimide groups . Alternatively, a fusion protein comprising an antibody and a cytotoxic agent can be produced, for example, by a recombinant technique or peptide synthesis. The length of the DNA may comprise separate regions encoding two portions of the conjugate that are adjacent to each other or separated by a region encoding a linker peptide that does not destroy the desired conjugate properties. In yet another embodiment, the antibody can be combined with a "receptor" (anti-streptavidin) for tumor pre-targeting, wherein the antibody-receptor conjugate is administered to the individual, followed by a scavenger The unbound conjugate is removed from the circulation and subsequently administered a "ligand" (eg, avidin) that binds to a cytotoxic agent (eg, a radionucleotide). A pharmaceutical formulation by using an antibody of the desired purity with a physiologically acceptable optional excipient or stabilizer; Kunhe (Heart Calendar ~ (4) (10) kg (10) · Heart / PW defeat; ^ 20 version ( 2_)) An analgesic formulation comprising an antibody of the invention is prepared in the form of an aqueous solution, an East Dry Flavor or other dry formulation for feeding. At the dosages and concentrations employed, acceptable carriers, excipients, or stabilizers are non-toxic to the recipient, and include buffering agents, such as 142552.doc -104- 201011047 such as phosphates, citrates, histidines And other organic acids; antioxidants, including ascorbic acid and methionine; preservatives (such as gasified octadecyldimethylbenzylammonium; gasified hexahydrocarbon quaternary ammonium (hexameth〇nium chi〇ride) Benzalkonium chloride;
(benzethonium chloride);苯酚、丁醇或节醇;對羥基苯甲 酸烷基酯,諸如對羥基苯甲酸甲酯或對羥基苯甲酸丙酯; 兒茶酚,間苯二酚;環己醇;3_戊醇及間甲酚”低分子量 (少於約1〇個殘基)多肽;蛋白,諸如血清白蛋白、明膠或 免疫球蛋白;親水性聚合物,諸如聚乙烯吡咯啶酮;胺基 酸,諸如甘胺酸、麵醯胺酸、天冬醯胺、組胺酸' 精胺酸 或離胺酸;單醣、二醣及其他碳水化合物,包括葡萄糖、 甘露糖或糊精;螯合劑,諸如EDTA ;糖,諸如蔗糖、甘 露糖醇、海藻糖或山梨糖醇;成鹽平衡離子,諸如鈉;金 屬錯合物(例如Zn-蛋白錯合物);及/或非離子性界面活性 劑,諸如 TWEEN™、PLUR0NICSni或聚乙二醇(PEG)。 如所治療之特定適應症所需,本文之調配物亦可含有一 種以上活性化合物,較佳為具有不會不利地彼此影響之互 補活性的活性化合物。該等分子合適地以有效達成預期目 的之量組合存在。 亦可將活性成份包埋於例如藉由凝聚技術或藉由界面聚 合而製備之微膠囊(例如分別為羥曱基纖維素或明膠微膠 囊及聚(甲基丙烯酸曱酯)微膠囊)中,包埋於膠狀藥物傳遞 系統(例如脂質體、白蛋白微球體、微乳液、奈米粒子及 奈米膠囊)中或包埋於巨乳液中。該等技術揭示於 142552.doc •105- 201011047(benzethonium chloride); phenol, butanol or stilbene; alkyl parabens such as methylparaben or propylparaben; catechol, resorcinol; cyclohexanol; _ pentanol and m-cresol "low molecular weight (less than about 1 residue) polypeptide; protein, such as serum albumin, gelatin or immunoglobulin; hydrophilic polymer, such as polyvinylpyrrolidone; amino acid , such as glycine, acetophenone, aspartame, histidine 'arginine or lysine; monosaccharides, disaccharides and other carbohydrates, including glucose, mannose or dextrin; chelating agents, Such as EDTA; sugars such as sucrose, mannitol, trehalose or sorbitol; salt-forming counterions such as sodium; metal complexes (eg Zn-protein complexes); and/or nonionic surfactants Such as TWEENTM, PLUR0NICSni or polyethylene glycol (PEG). As required for the particular indication being treated, the formulations herein may also contain more than one active compound, preferably having complementary activities that do not adversely affect each other. Active compound Suitably in combination in an amount effective to achieve the intended purpose. The active ingredient may also be embedded in microcapsules prepared, for example, by coacervation techniques or by interfacial polymerization (for example, hydroxymercapto cellulose or gelatin microcapsules and poly( In decyl methacrylate microcapsules, embedded in a gelatinous drug delivery system (eg, liposomes, albumin microspheres, microemulsions, nanoparticles, and nanocapsules) or embedded in a macroemulsion. Other technologies are revealed at 142552.doc •105- 201011047
Remington: The Science and Practice of Pharmacy% IQ版 (2000)中。 待用於活體内投藥之調配物必須無菌。此易於藉由經無 菌濾膜過濾而實現。 可製備持續釋放型製劑。持續釋放型製劑之合適實例包 括含有本發明之免疫球蛋白的固體疏水性聚合物之半滲透 性基質’該等基質為成形物品之形式,例如薄膜或微膠 囊°持續釋放型基質之實例包括聚酯、水凝膠(例如,聚 (2-羥乙基·甲基丙烯酸酯)或聚(乙烯醇聚乳酸交醋(美 國專利第3,773,919號)、L-麩胺酸與γ-乙基-L-趄胺酸酿之 共聚物、不可降解之乙烯-乙酸乙烯酯、可降解之乳酸_乙 酵酸共聚物(諸如LUPRON DEPOT™,由乳酸-乙醇酸共聚 物與乙酸亮丙瑞林組成之可注射微球體)及聚_D_㈠_3_經基 丁酸。儘管諸如乙烯-乙酸乙烯酯及乳酸-乙醇酸之聚合物 能釋放分子歷時超過1〇〇天,但某些水凝膠釋放蛋白歷時 較短時段。當經囊封之免疫球蛋白在體内長時間保持時, 由於在37。(:下暴露於水份,故其可能變性或聚集,從而導 致生物活性之損失及免疫原性可能之改變。視所涉及之機 制而定,可設計合理之穩定策略。舉例而言,若發現聚集 機制係經由硫基二硫化物互換之分子間s_s鍵形成,則可 藉由修飾疏基殘基、自酸性溶液隸、控制水份含量、使 用適當添加劑及研製敎聚合物基f組合物來達成穩定化 作用。 III·治療性用途 142552.doc -106· 201011047 本文所述之結合HER2及VEGF兩者之抗體及抗體片段 (例如’ bHl-44或bHl-88或其片段)可用於治療腫瘤(包括癌 前、非轉移性及癌性腫瘤(例如,早期癌症))、用於治療自 體免疫疾病、用於治療企管生成病症、用於治療涉及 HER2之異常活化之疾病或用於治療具有發展癌症(例如, 乳癌、結腸直腸癌、肺癌 '腎細胞癌 '神經膝質瘤或印巢 癌)、jk管生成病症、自體免疫疾病或涉及HER2之異常活 化之疾病的風險之個體。 術語癌症涵蓋增殖性病症之集合,包括(但不限於)癌前 生長、良性腫瘤及惡性腫瘤。良性腫瘤保持位於初始位點 處且不具有浸潤、侵襲或轉移至遠端位點的能力。惡性腫 • 瘤將侵襲且損壞其周圍之其他組織。其亦可獲得離開起始 - 位點且通常經由血流或經由淋巴結所定位之淋巴系統擴散 至身體之其他部分(轉移)的能力。藉由產生原發腫瘤之組 織的類型對原發腫瘤分類;藉由引起癌細胞之組織類型對 轉移性腫瘤分類。惡性腫瘤細胞隨時間變得更加異常且似 乎更不像正常細胞。癌細胞外觀之此變化稱作腫瘤等級, 且癌細胞係描述為充分分化、中度分化、不良分化或未分 化。充分分化細胞之外觀相當正常且類似於產生其之正常 細胞。未分化細胞為已變得異常以致不再有可能確定細胞 起源之細胞。 腫瘤可為實體腫瘤或非實體腫瘤或軟組織腫瘤。軟組織 腫瘤之實例包括白血病(例如慢性骨髓性白血病、急性骨 髓性白血病、成年急性淋巴母細胞白血病、急性骨髓性白 142552.doc •107- 201011047 血病成熟B細胞急性淋巴母細胞白血病、慢性淋巴球性 白血病、前淋巴球性白血病或毛細胞白血病)或淋巴瘤(例 如非霍奇金氏淋巴瘤、皮膚T-細胞淋巴瘤或霍奇金氏病 (Hodgkin's disease))。實體腫瘤包括除血液、骨髓或淋巴 系統以外的任何身體組織之癌症。實體腫瘤可進一步分成 上皮細胞起源之實體腫瘤及非上皮細胞起源之實體腫瘤。 上皮細胞實體腫瘤之實例包括胃腸道、結腸、乳房、前列 腺、肺、腎臟、肝臟、胰腺、卵巢、頭及頸部、口腔、 胃、十二指腸、小腸、大腸、肛門、膽囊、唇、鼻咽、皮 膚、子宮、雄性生殖器、泌尿器、膀胱及皮膚之腫瘤。非 上皮起源之實體腫瘤包括肉瘤、腦腫瘤及骨腫瘤。 上皮癌症通常自良性腫瘤發展至侵襲前階段(例如,原 位癌瘤)、惡性癌症,其已滲透基膜且侵襲上皮細胞下基 質。 結合VEGF及HER2兩者之多重特異性抗體(例如’沾1-44或bHl-88或其片段)理想地用於治療乳癌、結腸直腸 癌、肺癌、腎細胞癌、神經膠質瘤或卵巢癌。 現已充分域定多種病症之發病機理中均牽涉血管生成。 該等病症包括實體腫瘤及轉移、動脈粥樣硬化、晶狀體後 纖維組織增生、血管瘤、慢性炎症、眼内新生血管疾病 (諸如增殖性視網膜病(例如糖尿病性視網膜病)、年齡相關 之黃斑退化(AMD)、新生血管性青光眼)、移植角膜組織 及其他組織之免疫排斥反應、類風濕性關節炎及牛皮癖。 Folkman等人,J. Biol. Chem.,267:10931-10934 (1992); 142552.doc • 108 · 201011047Remington: The Science and Practice of Pharmacy% IQ Edition (2000). Formulations to be administered in vivo must be sterile. This is easily accomplished by filtration through a sterile filter. A sustained release preparation can be prepared. Suitable examples of sustained release formulations include semipermeable matrices of solid hydrophobic polymers containing immunoglobulins of the invention. The matrices are in the form of shaped articles, such as films or microcapsules. Examples of sustained release matrices include poly Ester, hydrogel (for example, poly(2-hydroxyethyl methacrylate) or poly(vinyl alcohol polylactic acid vinegar (US Patent No. 3,773,919), L-glutamic acid and γ-ethyl-L - a copolymer of lysine, a non-degradable ethylene-vinyl acetate, a degradable lactic acid copolymer, such as LUPRON DEPOTTM, consisting of a lactic acid-glycolic acid copolymer and leuprolide acetate. Injection of microspheres) and poly-D_(a)_3_-butyric acid. Although polymers such as ethylene-vinyl acetate and lactic acid-glycolic acid can release molecules for more than 1 day, some hydrogel-releasing proteins last a short time. When the encapsulated immunoglobulin is maintained in the body for a long time, it may be denatured or aggregated due to exposure to water, resulting in loss of biological activity and possible changes in immunogenicity. Sight Depending on the mechanism involved, a reasonable stabilization strategy can be designed. For example, if the aggregation mechanism is found to be formed by the intermolecular s_s bond of the thiodisulfide interchange, the residue can be modified from the acidic solution. Stabilizing the composition by controlling the moisture content, using appropriate additives, and developing a polymer-based composition. III. Therapeutic Use 142552.doc -106· 201011047 Antibodies and antibodies that bind to both HER2 and VEGF as described herein Fragments (eg, 'bHl-44 or bHl-88 or fragments thereof) can be used to treat tumors (including precancerous, non-metastatic and cancerous tumors (eg, early cancer)), for the treatment of autoimmune diseases, for treatment Administering a condition, for treating a disease involving abnormal activation of HER2 or for treating a cancer having development (for example, breast cancer, colorectal cancer, lung cancer 'renal cell carcinoma' neurogenic kenoma or nest cancer), jk tube formation disorder An individual, an autoimmune disease, or an individual involved in the risk of a disease that is abnormally activated by HER2. The term cancer encompasses a collection of proliferative disorders including, but not limited to, precancerous growth, good Tumors and malignant tumors. Benign tumors remain at the initial site and do not have the ability to infiltrate, invade, or metastasize to distant sites. Malignant tumors • Tumors will invade and damage other tissues around them. - the ability of the site to spread to other parts of the body (metastasis), usually via the bloodstream or via the lymph nodes located in the lymph nodes. Classification of the primary tumor by the type of tissue from which the primary tumor is produced; by causing cancer cells Tissue type classifies metastatic tumors. Malignant tumor cells become more abnormal over time and appear to be less like normal cells. This change in the appearance of cancer cells is called tumor grade, and cancer cell lines are described as fully differentiated, moderately differentiated, and poorly Differentiated or undifferentiated. The well-differentiated cells look quite normal and resemble the normal cells from which they are produced. Undifferentiated cells are cells that have become abnormal so that it is no longer possible to determine the origin of the cell. The tumor can be a solid tumor or a non-solid tumor or a soft tissue tumor. Examples of soft tissue tumors include leukemia (eg, chronic myelogenous leukemia, acute myeloid leukemia, adult acute lymphoblastic leukemia, acute myeloid white 142552.doc • 107- 201011047 blood disease mature B cell acute lymphoblastic leukemia, chronic lymphocytes Leukemia, anterior lymphocytic leukemia or hairy cell leukemia) or lymphoma (eg, non-Hodgkin's lymphoma, cutaneous T-cell lymphoma, or Hodgkin's disease). Solid tumors include cancer of any body tissue other than blood, bone marrow or lymphatic system. Solid tumors can be further divided into solid tumors of epithelial origin and solid tumors of non-epithelial origin. Examples of epithelial solid tumors include the gastrointestinal tract, colon, breast, prostate, lung, kidney, liver, pancreas, ovary, head and neck, mouth, stomach, duodenum, small intestine, large intestine, anus, gallbladder, lip, nasopharynx, Tumors of the skin, uterus, male genitalia, urinary tract, bladder and skin. Solid tumors of non-epithelial origin include sarcomas, brain tumors, and bone tumors. Epithelial cancer usually develops from a benign tumor to a pre-invasive stage (e.g., a primary cancer), a malignant cancer that has penetrated the basement membrane and invades the epithelial cell matrix. Multispecific antibodies that bind to both VEGF and HER2 (e.g., <RTIgt;'''''''''''''''''''' It has been well established that angiogenesis is involved in the pathogenesis of a variety of conditions. Such conditions include solid tumors and metastases, atherosclerosis, post-lens fibrous tissue hyperplasia, hemangioma, chronic inflammation, intraocular neovascular diseases such as proliferative retinopathy (eg, diabetic retinopathy), age-related macular degeneration (AMD), neovascular glaucoma), immune rejection of transplanted corneal tissue and other tissues, rheumatoid arthritis and psoriasis. Folkman et al, J. Biol. Chem., 267: 10931-10934 (1992); 142552.doc • 108 · 201011047
Klagsbrun等人,Annu. Rev. Physiol. 53:217-239 (1991); 及 Garner A.,[Vascular diseases]於Pathobiology of 〇cular Disease. A Dynamic Approach, Garner A., Klintworth GK 編’第 2版(Marcel Dekker,NY,1994),第 1625-1710 頁中。 異常血管生成發生在新企管過度、不足或不當(例如就 醫學觀點而言,血管生成之位置、時序或發作不當)生長 時’其係以患病狀態或使得其引起患病狀態。過度、不當 或不受控之血管生成發生在促進患病狀態之惡化或引起患 病狀態之新血管生長時,諸如在癌症(尤其為血管化實體 腫瘤及轉移性腫瘤(包括結腸、肺癌(尤其為小細胞肺癌)或 前列腺癌))、眼科新生血管引起之疾病(尤其為糖尿病性失 _ 明、視網膜病、早期糖尿病性視網膜病或年齡相關之黃斑 • 退化(AMD))、糖尿病性黃斑水腫、大腦水腫(例如,與急 性中風/閉鎖性頭部損傷/外傷)、滑膜炎、類風濕性關節炎 中之血管翳形成、骨化性肌炎、肥厚性骨形成、難治性腹 物 水症、多囊性卵巢疾病、流體疾病之第三空間(胰炎、腔 室症候群、燒傷、腸疾病)、子宮肌瘤、早產兒、眼角新 生金官(虹膜紅變)、惡性肺積水、血管再狹窄、血管母細 胞瘤(諸如血管瘤);炎性腎疾病(諸如絲球體腎炎,尤其為 系膜增殖性絲球體腎炎)、溶血性尿毒癥候群、糖尿病性 腎病變或尚血壓性腎硬化症、各種炎性疾病(諸如關節炎 (尤其為類風濕性關節炎)、炎性腸疾病、牛皮癖、牛皮癖 (·生關知炎、斑塊牛皮癬、肉狀瘤病、動脈硬化及移植後發 生之疾病)、腎同種異體移植排斥反應、子宮内膜異位或 142552.doc 201011047 陵哮喘及7G種以上之其他病況中。新血管可供養患病组 織、知壞正常組織且在癌症之情況下,新血管可使應瘤細 胞逃離至循環中且留存於其他器官中(腫瘤轉移)。不足之 血管生成發生在存在促進患病狀態之惡化的不當血管生長 時,例如在諸如冠狀動脈疾病、中風及延遲性傷口癒合之 疾病中。此外,潰瘍、中風及心臟病發作可因不存在自然 恢復正常所需之也管生成所致。本發明涵蓋使用特異性地 結合VEGF及HER2兩者之抗體(例如,bm_81或bm_44抗 體)/。療患有上文所提及疾病或具有患該等疾病之風險的 彼等患者。 作為接受本發明組合物之候選者的其他患者患有以下疾 病或具有患以下疾病之風險:纖維小管組織之異常增殖、 痤瘡、後天性免疫缺乏症候群、動脈阻塞、異位性角膜 炎、、’田菌丨生’貝瘍、白塞氏病、血源性種瘤、頸動脈阻塞性 疾病、脈絡膜新生血管、慢性炎症、慢性視網膜脫離、慢 性葡萄膜炎、慢性玻璃體炎、隱形眼鏡超戴症、角膜移植 排斥反應、角膜新生血管、角膜移植新生血管、克羅恩氏 病、伊爾斯病(Eales disease)、流行性角膜結膜炎、真菌 潰瘍、單純疱疹感染、帶狀疱疹感染、黏性過大症候群、 卡堡氏肉瘤(Kaposi’s sarcoma)、白血病、脂質退化、萊姆 氏病(Lyme’s disease)、邊緣角質層分離、穆雷氏潰瘍 (Mooren ulcer)、除麻風以外之分枝桿菌(Myc〇bacteria)感 染、近視、眼科新生血管疾病、視盤小凹、〇sler_Weber症 候群(Osler-Weber-Rendu)、骨關節炎、佩吉特氏病、平坦 142552.doc 110 201011047 部炎、類天疱瘡、皰性角結膜病、多動脈炎、雷射後併發 症、原生蟲感染、彈性假黃瘤、翼狀胬肉乾性角膜炎、放 射狀角膜切開術、視網膜新生血管、早產兒視網膜病、晶 狀體後纖維組織增生、肉狀瘤、鞏膜炎、鐮狀細胞貧血、 修格連氏症候群(S〇grenis syndr〇me)、實體腫瘤、斯特格 氏病(Stargartis disease)、史蒂芬·約翰遜病(Steven,s Johnson disease)、上輪部角膜炎、梅毒、全身性狼瘡症、 n 特利恩氏角膜邊緣退化(Terrien's marginal degeneration)、 Η 虫 勺蟲症、尤文氏肉瘤(Ewing sarc〇ma)之腫瘤、神經母細胞 瘤之腫瘤、骨肉瘤之腫瘤、視網膜母細胞瘤之腫瘤、橫紋 肌肉瘤之腫瘤、潰瘍性結腸炎、靜脈阻塞、維生素A缺乏 (Vitamin A deficiency)、韋格内氏類肉瘤病(Wegener,s sarcoidosis)、與糖尿病相關聯之非所要血管生成、寄生性 疾病、異常傷口癒合、手術、損傷或外傷後肥大(例如, 急性肺損傷/ARDS)、抑制毛髮生長、抑制排卵及黃體形 成、抑制植入及抑制子宮中之胚胎發育。 抗血管生成療法適用於以下疾病之一般性治療:移植排 斥反應、肺炎、原發性肺高血壓、腎病症候群、初期子巔 及胸腔積水、具有不利血管滲透性特徵之疾病及病症(例 如’與腦部腫瘤相關聯之水腫、與惡性疾病相關聯之腹水 症、梅格氏症候群(Meigs,syndrome)、肺炎、腎病症候 群、心包膜積水(諸如與心包炎相關聯)、與心血管疾病相 關聯之滲透性(諸如,心肌梗塞及中風後之病況)及其類似 疾病)及敗金症。 142552.doc -111 · 201011047 賴性疾病包括血管纖維瘤(易 新生▲管性青光眼(眼睛腫也 本發明之其他血管生成依賴性 於出血之血管的異常血液)、新生 管之生長)、動靜脈畸形(AVM;動脈與靜脈之間的異常連Klagsbrun et al., Annu. Rev. Physiol. 53:217-239 (1991); and Garner A., [Vascular diseases] in Pathobiology of 〇cular Disease. A Dynamic Approach, Garner A., Klintworth GK, ed. 2nd edition (Marcel Dekker, NY, 1994), pp. 1625-1710. Abnormal angiogenesis occurs when new circulatory, inadequate, or inappropriate (e.g., from a medical point of view, where the location, timing, or episode of angiogenesis is growing) grows in a diseased state or causes it to cause a disease state. Excessive, inappropriate, or uncontrolled angiogenesis occurs when promoting the progression of a diseased state or the growth of new blood vessels that cause disease, such as cancer (especially vascularized solid tumors and metastatic tumors (including colon, lung cancer (especially For small cell lung cancer) or prostate cancer)), diseases caused by new blood vessels in ophthalmology (especially for diabetic nephropathy, retinopathy, early diabetic retinopathy or age-related macular degeneration (AMD)), diabetic macular edema Cerebral edema (eg, with acute stroke/locking head injury/trauma), synovitis, vasospasm in rheumatoid arthritis, ossifying myositis, hypertrophic bone formation, refractory abdomen water Symptoms, polycystic ovarian disease, the third space of fluid diseases (pancreatitis, chamber syndrome, burns, bowel disease), uterine fibroids, premature babies, eye horns Jin Jin (Iris redness), malignant hydronephrosis, blood vessels Restenosis, hemangioblastoma (such as hemangioma); inflammatory renal disease (such as spheroid nephritis, especially mesangial proliferative spheroid nephritis), dissolution Uremia syndrome, diabetic nephropathy or blood pressure nephrosis, various inflammatory diseases (such as arthritis (especially rheumatoid arthritis), inflammatory bowel disease, psoriasis, psoriasis (· 生生知炎,斑斑) Block psoriasis, sarcoidosis, arteriosclerosis and diseases after transplantation), renal allograft rejection, endometriosis or 142552.doc 201011047 Ling asthma and other conditions of 7G or more. New blood vessels can be raised In diseased tissues, poor normal tissues, and in the case of cancer, new blood vessels can cause tumor cells to escape to the circulation and remain in other organs (tumor metastasis). Insufficient angiogenesis occurs in the presence of disease-promoting conditions. Deteriorating inappropriate blood vessels grow, for example, in diseases such as coronary artery disease, stroke, and delayed wound healing. In addition, ulcers, strokes, and heart attacks can be caused by the absence of natural recovery. The invention encompasses the use of antibodies (eg, bm_81 or bm_44 antibodies) that specifically bind both VEGF and HER2. Those patients at risk of suffering from such diseases. Other patients who are candidates for receiving the compositions of the present invention are at risk of or suffering from the following diseases: abnormal proliferation of fibrous tubule tissue, acne, acquired immunodeficiency syndrome Arterial obstruction, atopic keratitis, 'Tianzhushengsheng' Bayer, Behcet's disease, blood-borne tumor, carotid artery obstructive disease, choroidal neovascularization, chronic inflammation, chronic retinal detachment, chronic grape Membrane inflammation, chronic vitreitis, contact lens hyperopia, corneal transplant rejection, corneal neovascularization, corneal neovascularization, Crohn's disease, Eales disease, epidemic keratoconjunctivitis, fungal ulcer, Herpes simplex infection, herpes zoster infection, hyperviscosity syndrome, Kaposi's sarcoma, leukemia, lipid degradation, Lyme's disease, marginal stratum corneum separation, Mooren ulcer In addition to leprosy, Myc〇bacteria infection, myopia, ophthalmic neovascular disease, small optic disc , 〇sler_Weber syndrome (Osler-Weber-Rendu), osteoarthritis, Paget's disease, flat 142552.doc 110 201011047 inflammation, pemphigoid, blisteric keratoconus, polyarteritis, post-laser complications , protozoal infection, elastic pseudo-xanthoma, pterygium dry keratitis, radial keratotomy, retinal neovascularization, retinopathy of prematurity, posterior fibrous hyperplasia, sarcoidosis, scleritis, sickle cell anemia , S〇grenis syndr〇me, solid tumor, Stargartis disease, Steven, s Johnson disease, upper keratitis, syphilis, systemic Lupus, n Terrien's marginal degeneration, echinococcosis, Ewing sarc〇ma tumor, neuroblastoma tumor, osteosarcoma tumor, retinoblast Tumor tumor, rhabdomyosarcoma tumor, ulcerative colitis, venous obstruction, Vitamin A deficiency, Wegener's sarcoma disease (Wegener, s Sarcoidosis), undesired angiogenesis associated with diabetes, parasitic diseases, abnormal wound healing, surgery, injury or post-traumatic hypertrophy (eg, acute lung injury/ARDS), inhibition of hair growth, inhibition of ovulation and corpus luteum formation, inhibition of planting Into and inhibit embryo development in the uterus. Anti-angiogenic therapy is indicated for general treatment of transplant rejection, pneumonia, primary pulmonary hypertension, renal disease, initial sputum and pleural effusion, diseases and conditions characterized by adverse vascular permeability (eg 'with Edema associated with brain tumors, ascites associated with malignant diseases, Meigs syndrome, pneumonia, renal syndrome, pericardial hydrops (as associated with pericarditis), and cardiovascular disease Infiltration (such as myocardial infarction and conditions after stroke) and similar diseases) and stagnation. 142552.doc -111 · 201011047 Lymphatic disease includes angiofibroma (easy neonatal ▲ ductal glaucoma (eye swelling, other angiogenesis of the invention depends on the abnormal blood of bleeding blood vessels), growth of new tubules), arteriovenous Malformation (AVM; abnormal connection between arteries and veins
形成)。 IV·劑量及調配物 抗體(例如,bHl-44或bHl-81)或抗體片段組合物將以與 良好醫藥實踐一致之方式經調配、給藥及投與。本文所考 慮之口素包括經治療之特定病症、經治療之特定哺乳動 物、個別個體之臨床病況、病症之原因、藥劑傳遞之位 點、投藥方法、投藥時程及醫師已知之其他因素。待投與 之抗體或抗體片段之「治療有效量」將由該等考慮因素來 決定且為預防、改善或治療癌症或自體免疫病症所需之最 小量。抗體或抗體片段無需(但視情況地)與一或多種藥劑 一起調配目前用於預防或治療癌症或自體免疫病症或發展 癌症或自體免疫病症之風險。該等其他藥劑之有效量視調 配物中存在之抗體或抗體片段之量、病症或治療之類型及 上文論述之其他因素而定。該等藥劑通常以如上文所使用 之相同劑量及投藥途徑使用或以迄今所使用之劑量之約 142552.doc • 112- 201011047 1%至99%使用。減輕或治療癌症通常包含減少與癌症相關 聯之一或多種症狀或醫學問題。治療有效量之藥物可實現 以下作用中之一者或其組合:減少(至少丨〇%、2〇%、 30/。、40%、50%、60。/。、70%、80%、90%、100%或 1〇〇〇/0 以上)癌細胞之數目;減少或抑制腫瘤尺寸或腫瘤負荷; 抑制(亦即,某種程度上減少及/或停止)癌細胞浸潤至周邊 器g ,在腺瘤之情況下減少激素分泌;減少血管密度;抑 制腫瘤轉移;減少或抑制腫瘤生長;及/或某種程度上緩 解與癌症相關聯之一或多種症狀。在一些實施例中,抗體 或抗體片段係用於預防個體之癌症或自體免疫病症發生或 復發。 在—項實施例令,本發明可用於增加易患癌症或自體免 . 疫病症或經沴斷患有癌症或自體免疫病症之人類患者的存 活持續時間。存活持續時間係定義為第一次投與藥物至死 亡之時間。存活持續時間亦可藉由治療組與對照組之分層 風險比(HR)來量測,其表示患者在治療期間之死亡風險。 在又一項實施例中,本發明之治療顯著增加經各種抗癌 療法治療之易患癌症或經診斷患有癌症之人類患者群的反 應率。反應率係定義為對治療有反應之經治療患者的百分 比。在一態樣中,本發明之使用抗體或抗體片段及手術、 輕射療法或-或多種化療劑之組合治療與僅經手術、輻射 療法或化療單獨治療之組相比,顯著增加經治療患者組之 反應率,該增加具有小於0.005之卡方P值(Chi-square P-value) ° 142552.doc -113- 201011047 對於癌症治療中之治療功效的額外量測係描述於美國專 利申請公開案第20050186208號中。 使用此項技術中已知之標準方法,藉由混合具有所需純 度之活性成份與可選之生理學上可接受之載劑、賦形劑或 穩定劑(Remington's Pharmaceutical Sciences(第 20版),A. Gennaro編,2000,Lippincott, Williams & Wilkins,Philadelphia, PA)來製備治療性調配物。可接受之載劑包括生理食鹽水 或緩衝劑,諸如磷酸鹽、擰檬酸鹽及其他有機酸;抗氧化 劑,包括抗壞血酸;低分子量(小於約10個殘基)多肽;蛋 白質,諸如血清白蛋白、明膠或免疫球蛋白;親水性聚合 物,諸如聚乙烯吡咯啶酮;胺基酸,諸如甘胺酸、麩胺醯 胺、天冬醯胺、精胺酸或離胺酸;單醣、二醣及其他碳水 化合物,包括葡萄糖、甘露糖或糊精;螯合劑,諸如 EDTA ;糖醇,諸如甘露糖醇或山梨糖醇;成鹽平衡離 子,諸如鈉;及/或非離子性界面活性劑,諸如 TWEEN™、PLURONICS頂或 PEG。 視情況但較佳地,調配物含有醫藥學上可接受之鹽,較 佳為氯化鈉且其較佳處於約生理學濃度下。視情況而定, 本發明之調配物可含有醫藥學上可接受之防腐劑。在一些 實施例中,防腐劑濃度介於0.1%至2.0%(—般為v/v)之範圍 内。合適防腐劑包括醫藥技術中已知者。节醇、苯盼、間 曱酚、對羥基苯曱酸曱酯及對羥基苯曱酸丙酯為較佳防腐 劑。視情況而定,本發明之調配物可包括濃度為0.005%至 0.02%之醫藥學上可接受之界面活性劑。 142552.doc -114- 201011047 如所治療之特定適應症所需,本文之調配物亦可含有一 種以上活性化合物,較佳為具有不會不利地彼此影響之互 補活性的活性化合物。該等分子合適地以有效達成預期目 的之量組合存在。form). IV. Dosage and Formulations Antibodies (e.g., bHl-44 or bHl-81) or antibody fragment compositions will be formulated, administered, and administered in a manner consistent with good pharmaceutical practice. The factors considered herein include the particular condition being treated, the particular mammal being treated, the clinical condition of the individual, the cause of the condition, the location of the agent, the method of administration, the schedule of administration, and other factors known to the physician. The "therapeutically effective amount" of the antibody or antibody fragment to be administered will be determined by such considerations and is the minimum amount required to prevent, ameliorate or treat the cancer or autoimmune disorder. The antibody or antibody fragment does not need (but optionally) be formulated with one or more agents to present a risk for the prevention or treatment of cancer or autoimmune disorders or the development of cancer or autoimmune disorders. The effective amount of such other agents will depend on the amount of antibody or antibody fragment present in the formulation, the type of disorder or treatment, and other factors discussed above. Such agents are generally used in the same dosages and routes of administration as used above or in the amounts used to date from 142552.doc • 112- 201011047 1% to 99%. Reducing or treating cancer typically involves reducing one or more symptoms or medical problems associated with cancer. A therapeutically effective amount of a drug may achieve one or a combination of the following effects: reduction (at least 丨〇%, 2%%, 30%, 40%, 50%, 60%, 70%, 80%, 90%) %, 100% or 1〇〇〇/0 or more) the number of cancer cells; reducing or inhibiting tumor size or tumor burden; inhibiting (ie, reducing and/or stopping to some extent) cancer cells infiltrating into the peripheral device g, Reduces hormone secretion in the case of adenomas; reduces vascular density; inhibits tumor metastasis; reduces or inhibits tumor growth; and/or somewhat alleviates one or more symptoms associated with cancer. In some embodiments, the antibody or antibody fragment is used to prevent the onset or recurrence of a cancer or autoimmune disorder in an individual. In the present invention, the present invention can be used to increase the duration of survival of a human patient susceptible to cancer or autoimmune immune disease or by having a cancer or autoimmune disorder. The duration of survival is defined as the time from the first drug administration to death. The duration of survival can also be measured by the stratification risk ratio (HR) of the treatment group versus the control group, which indicates the risk of death of the patient during the treatment period. In yet another embodiment, the treatment of the present invention significantly increases the response rate of a human patient population susceptible to cancer or diagnosed with cancer treated by various anti-cancer therapies. The response rate is defined as the percentage of treated patients who respond to treatment. In one aspect, the use of an antibody or antibody fragment of the invention in combination with surgery, light therapy, or - or multiple chemotherapeutic agents significantly increases the number of treated patients compared to a group treated only by surgery, radiation therapy, or chemotherapy alone. The response rate of the group, which has a Chi-square P-value of less than 0.005 ° 142552.doc -113- 201011047 Additional measures for the therapeutic efficacy of cancer treatment are described in the U.S. Patent Application Publications In No. 20050186208. By mixing standard ingredients of the desired purity with optional physiologically acceptable carriers, excipients or stabilizers using standard methods known in the art (Remington's Pharmaceutical Sciences (20th Edition), A Gennaro, ed., 2000, Lippincott, Williams & Wilkins, Philadelphia, PA) to prepare therapeutic formulations. Acceptable carriers include physiological saline or buffers such as phosphates, citrates and other organic acids; antioxidants, including ascorbic acid; low molecular weight (less than about 10 residues) polypeptides; proteins such as serum albumin , gelatin or immunoglobulin; hydrophilic polymer such as polyvinylpyrrolidone; amino acid such as glycine, glutamine, aspartame, arginine or lysine; monosaccharide, Sugars and other carbohydrates, including glucose, mannose or dextrin; chelating agents such as EDTA; sugar alcohols such as mannitol or sorbitol; salt-forming counterions such as sodium; and/or nonionic surfactants Such as TWEENTM, PLURONICS top or PEG. Optionally, but preferably, the formulation contains a pharmaceutically acceptable salt, preferably sodium chloride and preferably at about physiological concentrations. The formulations of the present invention may contain a pharmaceutically acceptable preservative, as the case may be. In some embodiments, the preservative concentration ranges from 0.1% to 2.0% (typically v/v). Suitable preservatives include those known in the medical arts. Alcohol, benzophenone, m-nonylphenol, decyl p-hydroxybenzoate and propyl p-hydroxybenzoate are preferred preservatives. The formulation of the present invention may comprise a pharmaceutically acceptable surfactant at a concentration of from 0.005% to 0.02%, as the case may be. 142552.doc -114- 201011047 The formulations herein may also contain more than one active compound, preferably active compounds having complementary activities that do not adversely affect each other, as required for the particular indication being treated. The molecules are suitably present in combination in an amount effective to achieve the intended purpose.
亦可將活性成份包埋於例如藉由凝聚技術或藉由界面聚 合作用而製備之微膠囊(例如分別為經曱基纖維素或明膝 微膠囊及聚(甲基丙烯酸曱酯)微膠囊)中,包埋於膠狀藥物 傳遞系統(例如脂質體、白蛋白微球體、微乳液、奈米粒 子及奈米膠囊)中或包埋於巨乳液中。前述Remingt〇n,s Pharmaceutical Sciences 中揭示該等技術。 可製備持績釋放型製劑。持續釋放型製劑之合適實例包 括含有抗體之固體疏水性聚合物的半滲透性基質,該等基 質為成形物品之形式,例如薄膜或微膠囊。持續釋放型基 質之實例包括聚酯、水凝膠(例如,聚(2羥乙基·甲基丙稀 酸S曰)或聚(乙稀醇))、聚乳酸交醋(美國專利第3,773,919 號)、L-麵胺酸與γ乙基-L-麵胺酸醋之共聚物、不可降解之 乙烯-乙酸乙烯酯、可降解之乳酸-乙醇酸共聚物(諸如, LUPRON DEPOTtm,由乳酸_乙醇酸共聚物與乙酸亮丙瑞 林(leuprolide acetate)組成之可注射微球體)及聚_d_(_) 3_ 經基丁酸。儘管諸如乙烯-乙酸乙烯酯及乳酸-乙醇酸之聚 合物能釋放分子歷時超過100天’但某些水凝膠釋放蛋白 歷時較短時段。當經囊封之抗體在體内長時間保持時,由 於在37°c下暴露於水份,故其可變性或聚集,從而導致生 物活性之損失及免疫原性可能之變化。視所涉及之機制而 142552.doc -115- 201011047 定’可設計合理之穩定策略。舉例而言,若發現聚集機制 係經由硫基-二硫化物互換之分子間s - s鍵形成,則可藉由 修飾魏基殘基、自酸性溶液凍乾、控制水份含量、使用適 當添加劑且研製特定聚合物基質組合物來達成穩定化作 用。 根據已知方法,諸如以大丸劑形式經靜脈内投與,或藉 由經一段時間連續輸注,藉由肌肉内、腹膜内、腦脊髓 内、皮下、關節内、滑膜内、鞘内、經口、局部或吸入途 徑’將本文所述之抗體及抗體片段(例如,bHl-44或bHl-81或其片段)投與人類個體。若廣泛之副作用或毒性與 VEGF及/或HER2拮抗作用相關聯,則特定需要局部投藥。 亦可將離體策略用於治療應用。離體策略包含以編碼抗體 或抗體片段之聚核苷酸轉染或轉導自個體獲得之細胞。隨 後使經轉染或轉導之細胞返回至個體。該等細胞可為多種 類型中之任一者,包括(但不限於)造血細胞(例如骨髓細 胞、巨噬細胞、單核細胞、樹突狀細胞、T細胞或B細 胞)、纖維母細胞、上皮細胞、内皮細胞、角質細胞或肌 細胞。 在一實例中,當腫瘤病症或位置允許時,局部(例如藉 由直接注射)投與抗體(例如’ bHl-44或bHl-81)或抗體片 段,且可定期重複注射。亦可將抗體或抗體片段全身性地 傳遞至個體或直接傳遞至腫瘤細胞,例如傳遞到腫瘤或在 手術切除腫瘤後傳遞至腫瘤床’以預防或減少局部復發或 轉移。 142552.doc •116- 201011047 ν·製造物品及套组 本發明之另一項實施例為一種含有適用於治療自體免疫 疾病及癌症之物質的製造物品。該製造物品包含一容器及 一在該容器上或與該容器相聯之標籤或包裝插頁。合適之 谷器包括(例如)瓶子、小瓶、注射器等。該等容器可由諸 如玻璃或塑膠之各種材料形成。該容器容納對治療病況有 效之組合物且可具有一無菌進入孔(例如,容器可為具有 可由皮下注射針刺穿之塞子的靜脈輸液袋或小瓶)。該組 合物中之至少-種活性劑為本發明之多重特異性抗體或抗 體片&抗體。標籤或包裝插頁指示該組合物係用於治療特 定病況。標籤或包裝插頁將另外包含關於向患者投與抗體 組合物之說明書。亦涵蓋包含本文所述之組合療法的製造 物品及套組。The active ingredient may also be embedded in microcapsules prepared by, for example, coacervation techniques or by interfacial polymerization (for example, thiolated cellulose or open knee microcapsules and poly(methacrylate methacrylate) microcapsules, respectively). It is embedded in a gelatinous drug delivery system (such as liposome, albumin microspheres, microemulsion, nanoparticle and nanocapsules) or embedded in a macroemulsion. Such techniques are disclosed in the aforementioned Remingt(R), s Pharmaceutical Sciences. A performance release formulation can be prepared. Suitable examples of sustained release formulations include semipermeable matrices of solid hydrophobic polymers containing antibodies in the form of shaped articles such as films or microcapsules. Examples of sustained release matrices include polyesters, hydrogels (e.g., poly(2-hydroxyethyl methacrylate) or poly(ethylene glycol)), polylactic acid vinegar (U.S. Patent No. 3,773,919) a copolymer of L-face acid and γ-ethyl-L- face vinegar, non-degradable ethylene-vinyl acetate, a degradable lactic acid-glycolic acid copolymer (such as LUPRON DEPOTtm, from lactic acid to ethanol) An injectable microsphere composed of an acid copolymer and leuprolide acetate and poly-d_(_) 3_butyric acid. Although polymers such as ethylene-vinyl acetate and lactic acid-glycolic acid are capable of releasing molecules for more than 100 days', certain hydrogel-releasing proteins take a relatively short period of time. When the encapsulated antibody is maintained in the body for a long period of time, it is variably or aggregated due to exposure to moisture at 37 ° C, resulting in loss of biological activity and possible changes in immunogenicity. Depending on the mechanism involved, 142552.doc -115- 201011047 can be designed to be a stable strategy. For example, if the aggregation mechanism is found to be formed by the intermolecular s-s bond of the thio-disulfide interchange, it can be modified by modifying the Wei group, lyophilizing from the acidic solution, controlling the moisture content, and using appropriate additives. And specific polymer matrix compositions are developed to achieve stabilization. According to known methods, such as intravenous administration in the form of a bolus, or by continuous infusion over a period of time, by intramuscular, intraperitoneal, intracranial, subcutaneous, intra-articular, intrasynovial, intrathecal, meridian Oral, topical or inhalation routes' The administration of antibodies and antibody fragments (e.g., bHl-44 or bHl-81 or fragments thereof) as described herein to a human subject. If extensive side effects or toxicity are associated with VEGF and/or HER2 antagonism, topical administration is required. Ex vivo strategies can also be used for therapeutic applications. An ex vivo strategy involves transfecting or transducing cells obtained from an individual with a polynucleotide encoding an antibody or antibody fragment. The transfected or transduced cells are then returned to the individual. The cells can be of any of a variety of types including, but not limited to, hematopoietic cells (eg, bone marrow cells, macrophages, monocytes, dendritic cells, T cells, or B cells), fibroblasts, Epithelial cells, endothelial cells, keratinocytes or muscle cells. In one example, an antibody (e.g., 'bHl-44 or bHl-81) or antibody fragment is administered topically (e.g., by direct injection) when the tumor condition or location permits, and the injection can be repeated periodically. The antibody or antibody fragment can also be delivered systemically to the individual or directly to the tumor cell, e.g., to the tumor or to the tumor bed after surgical removal of the tumor' to prevent or reduce local recurrence or metastasis. 142552.doc • 116- 201011047 ν·Manufactured Articles and Kits Another embodiment of the present invention is an article of manufacture containing a substance suitable for the treatment of autoimmune diseases and cancer. The article of manufacture comprises a container and a label or package insert on or associated with the container. Suitable cereals include, for example, bottles, vials, syringes, and the like. The containers may be formed from a variety of materials such as glass or plastic. The container holds a composition effective for treating the condition and may have a sterile access port (e.g., the container may be an intravenous infusion bag or vial having a stopper pierceable by a hypodermic needle). At least one of the active agents in the composition is a multispecific antibody or an anti-body tablet & antibody of the invention. The label or package insert indicates that the composition is used to treat a particular condition. The label or package insert will additionally contain instructions for administering the antibody composition to the patient. Articles of manufacture and kits comprising the combination therapies described herein are also contemplated.
包裝插頁係指通常包括在治療性產品之商業包裝中之說 曰’、含有關於適應症、用法、劑量、投藥、禁忌及, 或關於使用該等治療性產品之注意事項的資訊。在其他實 施:中’包裝插頁指示該組合物係用於治療乳癌、結腸直 腸“、肺癌、腎細胞癌、神經膠質瘤或印巢癌。 藥可2物品可另外包含一第二容器,該容器包含醫 酸睡緩衝睡^之緩衝劑,諸如抑菌性注射用水(BWFI)、磷 二其:另外包括就商業及使用者觀點而言所需之其他材 …括其他緩衝劍、稀釋劍、過遽 亦提供適用於各種目的之套組,例如適用於使射㈣卩或 142552.doc • J17- 201011047 HER2自細胞純化或免疫沈殿。對於分離及純化vegf或 HER2而言’該套組可含有與珠粒(例如,瓊脂糖珠粒)偶合 之VEGF/HER2抗體(例如’ bHl-44或bHl-81)。可提供含有 用於活體外(例如以ELIS A或西方墨點法)偵測及定量VEGF 或HER2之抗體的套組。如同製造物品,套組包含一容器 及一在該容器上或與該容器相聯之標籤或包裝插頁。該容 器容納包含至少一種本發明之多重特異性抗體或抗體片段 的組合物。可包括含有(例如)稀釋劑及緩衝劑或對照抗體 之額外容器。標籤或包裝插頁可提供關於組合物之描述以 及關於預期活體外或診斷用途之說明。 應認為,上述書面描述足以使熟習此項技術者能夠實施 本發明。以下實例僅出於說明目的而提供,且不意欲以任 何方式限制本發明之範疇。實際上,根據上述說明除本 文中所示及所述外對本發明之各種修改將為熟習此項技術 者所顯而易見且屬於隨附申請專利範圍之範疇内。 實例 實例1.文庫設計及建構 抗體之抗原結合位點係藉由使各自含有三個用於抗原識 別之CDR環的重鏈(HC)與輕鏈(LC)之可變域(Vh、締合 而形成。在許多情況下,兩個可變域中之一者(常為Vh)決 定著抗原特異性。除完整Lc譜系以外具有轉殖基因HC之 小鼠產生中和抗體力價(Senn等人,Eur. j化爪仙… 33:950-961,2GG3)。吾人著手研究抗體之雙特異性可如何 出現及域之不同使用能否實現雙重抗原結合特異 142552.doc .118· 201011047 性。 採用半經驗方法來尋求用於多樣化抗體輕鏈之胺基酸組 成與CDR長度及文庫模板的設計,其中該文庫模板使得可 產生功能性噬菌體呈現抗體庫且可自該抗體庫中選擇出特 異性地結合至蛋白抗原之抗艎》如Kabat資料庫中所示具 有大約1500個人類κ輕鏈序列之CDR區的序列及長度多樣 性用於引導文庫設計方法。把向經溶劑暴露之殘基以供隨 機化之用。隨機化位置之子集經定製以表示位於該等位點 處之作為天然譜系之一部分的胺基酸,而剩餘位點則經隨 機化以包括所有20個天然產生之胺基酸。 詳言之,如本文所述修飾下文列舉之輕鏈模板(可變 • 域)(加下劃線之殘基已經隨機化)(SEQ ID NO:10)。Package inserts are information that is typically included in commercial packaging of therapeutic products, containing information about indications, usage, dosage, dosing, contraindications, or precautions regarding the use of such therapeutic products. In other embodiments: the 'package insert indicates that the composition is for treating breast cancer, colorectal, lung cancer, renal cell carcinoma, glioma or nest cancer. The drug 2 may additionally comprise a second container, The container contains a buffer for medical acid sleep buffers, such as bacteriostatic water for injection (BWFI), phosphorus, and other materials required for commercial and user reasons... including other buffering swords, dilution swords, Over-the-counter also provides kits for a variety of purposes, such as for the injection of (four) 卩 or 142552.doc • J17- 201011047 HER2 from cell purification or immunosuppression. For separation and purification of vegf or HER2 'this kit can contain a VEGF/HER2 antibody (eg, 'bHl-44 or bHl-81) coupled to a bead (eg, agarose beads). It may be provided for inclusion in vitro (eg, by ELIS A or Western blot) and A kit for quantifying antibodies to VEGF or HER 2. As with articles of manufacture, the kit comprises a container and a label or package insert on or associated with the container. The container contains at least one of the multiple specificities of the invention. Antibody or A composition of a bulk fragment. May include an additional container containing, for example, a diluent and a buffer or control antibody. The label or package insert can provide a description of the composition and instructions for the intended in vitro or diagnostic use. The above written description is sufficient to enable those skilled in the art to practice the invention. The following examples are provided for illustrative purposes only and are not intended to limit the scope of the invention in any way. Various modifications of the invention will be apparent to those skilled in the art and are within the scope of the appended claims. Example 1. Library design and construction of antigen binding sites of antibodies by using three The heavy chain (HC) of the CDR loop recognized by the antigen is formed by the variable domain (Vh, association) of the light chain (LC). In many cases, one of the two variable domains (often Vh) is determined. Antigen specificity. Mice with a transgenic gene HC other than the intact Lc line produce neutralizing antibody valence (Senn et al., Eur. j. Claws... 33:950-961, 2GG3). Begin to investigate how bispecificity of antibodies can occur and whether different domains can achieve dual antigen binding specificity. 142552.doc .118· 201011047. Semi-empirical methods are used to find amino acid compositions for diversified antibody light chains. The design of the CDR length and library template, wherein the library template enables the production of a functional phage to display an antibody library and the selection of an antibody specific for binding to a protein antigen from the antibody library, as shown in the Kabat library. The sequence and length diversity of the CDR regions of the 1500 human-like kappa light chain sequence was used to guide the library design method. The residues exposed to the solvent were used for randomization. A subset of the randomized positions are customized to represent the amino acids at that site as part of the natural lineage, while the remaining sites are randomized to include all 20 naturally occurring amino acids. In particular, the light chain template (variable • domain) listed below (the underlined residues have been randomized) (SEQ ID NO: 10) is modified as described herein.
DIQMTOSPSSLSASVGDRVTITCIL^SOD^VNTAVAWYOOKPGKAPKLLIYS^ASFLYSDIQMTOSPSSLSASVGDRVTITCIL^SOD^VNTAVAWYOOKPGKAPKLLIYS^ASFLYS
GVPSRPSGSGSGTDFTmSSLOPEDFATYYCOOH91YTTPPTFGOGTKVEIKRTVAAPSGVPSRPSGSGSGTDFTmSSLOPEDFATYYCOOH91YTTPPTFGOGTKVEIKRTVAAPS
VFIFPPSDEQLKSGTASWCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSVFIFPPSDEQLKSGTASWCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDS
TYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVIKSFNRGECTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVIKSFNRGEC
基於3個人類Fab及scFv模板產生四組文庫,其中乾向不 同組之位置以供隨機化之用(圖1)。 在所有文庫中,重鏈與其由文庫模板所確定之序列保持Four sets of libraries were generated based on 3 human Fab and scFv templates, with the dry heads in different groups for randomization (Figure 1). In all libraries, the heavy chain remains in the sequence determined by the library template
恆定。重鏈模板(可變域)序列列於下文中(SEQ ID ΝΟ:11)。Constant. The heavy chain template (variable domain) sequence is listed below (SEQ ID NO: 11).
WQLVESGGGLVQPGGSLRLSCAASGFNIKDTYfflWVRQAPGKGLEWVARIYPTNGWQLVESGGGLVQPGGSLRLSCAASGFNIKDTYfflWVRQAPGKGLEWVARIYPTNG
YTRYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCSRWGGDGFYAMDYWYTRYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCSRWGGDGFYAMDYW
GQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALrSGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALrS
GVHTFPAVLQSSGLYSLSSWTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTGVHTFPAVLQSSGLYSLSSWTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKT
H -119- 142552.doc 201011047 文庫設計概括於圖i及圖2中。所有文庫模板均含有嵌埋 於CDR L1中之終止密碼子(sidhu等人,2〇〇4)以防止在噬 菌體呈現抗體庫成員之間存在模板輕鏈。模板CDR序列概 括於圈3中。 在一實例中,吾人於HER2特異性抗體之lc可變域中引 入突變以識別可在保持初始結合特異性之同時結合不同蛋 白抗原的變異體。吾人採取保守方法來隨機化LC CDR以 便產生可穩定表現之變異體。選擇12個經溶劑暴露之LC CDR位置用於隨機化:CDR1中五個(28、29、3〇、31、 32)、CDR2中三個(50、51、53mcDR3 中四個(91、92、 93、94)。此外,為引導選定位點處之胺基酸多樣性的設 計’藉由分析大約1500個人類κ LC CDR序列來檢驗該等 位置之天然多樣性(Johnson及Wu,Nucleic Acids ReS. 28:214,2000 ; Chothia 及 Lesk,J. Mol· Biol. 196:901, 1987)(圈4)。使具有相對較高之天然多樣性之一些位置 (30、3 1、50、92、93)完全隨機化,而其他位置則限於少 至兩種胺基酸類型以模擬天然抗體。天然Lc CDR1及 CDR3之長度變化亦反映於文庫中(圖4)β在圖4中,χ表示 如所示以低頻率設計之胺基酸類型。藉由在殘基3〇與31之 間及在殘基93與94之間插入1至5個殘基來建構長度多樣 性。 LC庫為生產性原初譜系(表1)。所列者為在四輪選擇結 束時師檢95個隨機純系的結果。詳言之,如所述針對固定 標靶(VEGF、DR5及人類Fc)進行對新結合特異性之選擇 142552.doc •120- 201011047 (Sidhu等人,J. Mol. Biol. 338:299, 2004)。在四輪選擇之 後,使用ELISA檢定95個噬菌體純系與標靶HER2及非標靶 蛋白(BSA)之結合以確保特異性結合。為富集保持HER2結 合之標靶結合純系,對HER2進行最後一輪選擇。對陽性 純系定序。為識別最高親和性結合物,藉由競爭性ELIS A 測定抗原結合之IC5Q(Sidhu等人,J. Mol. Biol. 338:299, 2004)。展示如藉由序列分析所測定之獨特純系的數目及 保持HER2結合之獨特純系(雙特異性純系)的數目。該等純 系對於不相關抗原(諸如BSA)展示最低背景結合信號。 表1.輕鏈庫選擇概要 陽性% 獨特序列 HER2陽性 人類Fc融合 63 31/61 1 hVEGF 77 41/74 30/41 DR5長 85 5/82 2*/5 =弱結合信號 標靶 雙特異性,篩檢 雙特異性,選擇 人類Fc融合 1/31 未測出 hVEGF 30/41 94/94 DR5長 2*15 2/7** *=弱結合信號Her2 ** =弱結合信號DR5 針對以下三種蛋白抗原之選擇:人類血管内皮生長因子 (hVEGF)、死亡受體5(DR5)及IgG之補體結合片段(Fc),產 生多個結合純系(圖5A)。一些純系喪失對HER2之結合親 和性,而其他純系保持HER2結合且因此具雙特異性。與 Herceptin®抗體相比,對具有新結合特異性之1 3 1個獨特 Herceptin®抗體變異體的序列分析識別胺基酸取代及插入 (圖 5B) 〇 142552.doc -121- 201011047H-119- 142552.doc 201011047 Library design is summarized in Figures i and 2. All library templates contained a stop codon embedded in CDR L1 (sidhu et al., 2〇〇4) to prevent the presence of a template light chain between phage-presenting antibody library members. The template CDR sequence is outlined in circle 3. In one example, we introduce mutations in the lc variable domain of a HER2-specific antibody to identify variants that bind to different protein antigens while maintaining initial binding specificity. We adopt a conservative approach to randomize the LC CDRs to produce stable variants. Twelve solvent exposed LC CDR positions were selected for randomization: five of CDR1 (28, 29, 3〇, 31, 32), three of CDR2 (four of 50, 51, 53mcDR3 (91, 92, 93, 94). In addition, to guide the design of amino acid diversity at selected sites', the natural diversity of these positions was examined by analyzing approximately 1500 human-like κ LC CDR sequences (Johnson and Wu, Nucleic Acids ReS) 28:214,2000; Chothia and Lesk, J. Mol·Biol. 196:901, 1987) (Circle 4). Some locations with relatively high natural diversity (30, 3 1, 50, 92, 93) completely randomized, while other positions are limited to as few as two amino acid types to mimic natural antibodies. The length changes of native Lc CDR1 and CDR3 are also reflected in the library (Fig. 4) β is in Figure 4, χ indicates The type of amino acid designed at a low frequency is shown. Length diversity is constructed by inserting 1 to 5 residues between residues 3〇 and 31 and between residues 93 and 94. LC library is productive The original pedigree (Table 1). The listed are the results of 95 random pure lines at the end of the four-round selection. In detail, for the fixed standard Targets (VEGF, DR5, and human Fc) were selected for new binding specificity 142552.doc • 120- 201011047 (Sidhu et al., J. Mol. Biol. 338:299, 2004). After four rounds of selection, ELISA was used. The binding of 95 phage pure lines to the target HER2 and non-target protein (BSA) was assayed to ensure specific binding. The last round of selection of HER2 was performed for the enrichment of the target binding pure line that maintains HER2 binding. The positive pure line was sequenced. To identify the highest affinity conjugate, antigen binding IC5Q was determined by competitive ELIS A (Sidhu et al, J. Mol. Biol. 338:299, 2004). Shows the number of unique pure lines as determined by sequence analysis. And the number of unique pure lines (bispecific lines) that maintain HER2 binding. These lines display the lowest background binding signal for unrelated antigens (such as BSA). Table 1. Light chain library selection summary positive % Unique sequence HER2 positive human Fc fusion 63 31/61 1 hVEGF 77 41/74 30/41 DR5 length 85 5/82 2*/5 = weak binding signal target bispecific, screening for bispecific, selection of human Fc fusion 1/31 no hVEGF detected 30/41 94/94 DR5 Length 2*15 2/7** *=Weak Binding signal Her2 ** = weak binding signal DR5 is selected for the following three protein antigens: human vascular endothelial growth factor (hVEGF), death receptor 5 (DR5) and IgG complement-binding fragment (Fc), resulting in multiple binding lines ( Figure 5A). Some pure lines lose binding affinity for HER2, while other pure lines maintain HER2 binding and are therefore bispecific. Sequence analysis of 133 unique Herceptin® antibody variants with novel binding specificity recognizes amino acid substitutions and insertions compared to Herceptin® antibodies (Fig. 5B) 142 142552.doc -121- 201011047
突變數目在3至17之範圍内。保持HER2結合之純系(雙 特異性純系)與喪失HER2結合能力之純系相比平均含有較 少之突變。保持Herceptin®抗體CDR-L3序列係較佳的’但 不足以保留HER2結合。此與以下報導一致:Herceptin®抗 體CDR-L3為對於HER2結合而言最重要之LC CDR(Kelley 及 O'Connell, Biochemistry 32:6828· 1993)。代表性 VEGF 結合純系被表現為Fab及IgG蛋白(表2)。 表2.自Herceptin®抗體之輕鏈庫分離出之代表性抗體 (SEQ ID NO:12-23)。 CDR-L1 CDR-L2 CDR-L3 特異性 KD(nM) 2 8 2 9 3 0 3 0 a 3 0 b 3 0 c 3 0 d 3 1 3 2 3 3 5 0 5 1 5 2 5 3 9 1 9 2 9 3 9 3 a 9 3 b 9 4 Herceptin^ Γ) V N . - - T A V S A S F H Y ΐ '1' HER2 0.1 3-la N V W D W V P A S S G W Y I A VEGF 15 bHl Π T P R S I S G Y V w G s Y H Y '1' 1 VEGF/HER2 300/26 bH3 Π r G L G s V w A s Y H Y T '1' 19,000/8 bH4 D I R S G s V w G s Y H Y T r 3,500/11 3與Herceptin®抗體之差異係以粗體顯示。 為證明該等抗體特異性地結合至其同源抗原且不與其他 蛋白質非特異性地相互作用,吾人展示對於一組哺乳動物 細胞溶胞物及非抗原蛋白無可偵測之結合。該檢定證實經 純化IgG或Fab之單特異性及雙特異性(圖6)。 源自LC庫之單特異性抗體的平衡結合親和力(KD)在15至 150 nM之範圍内。雙特異性抗體以高nM至低μΜ之親和力 結合新抗原(亦即,VEGF)且以低ηΜ親和力結合HER2(表 2)。在表2中所示之抗體中,抗體bHl對兩種不同蛋白抗原 VEGF(KD=300 nM)及HER2(KD=26 nM)展示最高雙特異性 親和力。 材料 142552.doc -122- 201011047 酶及M13-K07輔助嗤菌體係來自New England Biolabs。 大腸桿菌XLl-Blue係來自Stratagene。牛血清白蛋白 (BSA)、卵白蛋白及Tween 20係來自Sigma。中性鏈親和 素、絡蛋白及Superblock係來自Pierce。固定化蛋白G及抗Μ13 結合之辣根過氧化酶(HRP)係來自GE Healthcare(Piscataway, NJ)。Maxisorp 免疫培養盤係來自 NUNC(Roskilde, Denmark)。四甲基聯苯胺(TMB)受質係來自Kirkegaard及 Perry Laboratories(Gaithersburg,MD)。所有蛋白抗原係由 Genentech, Inc之研究組產生。使用IUB碼表示DNA簡併, 且除非另有指示,否則表示等莫耳混合物:N=A/C/G/T、 D=A/G/T 、V=A/C/G 、B=C/G/T 、H=A/C/T 、K=G/T、 M=A/C、R=A/G、S=G/C、W=A/T、Y=C/T。The number of mutations is in the range of 3 to 17. The pure line (bispecifically pure line) that maintains HER2 binding contains on average fewer mutations than the pure line that loses HER2 binding ability. Maintaining the Herceptin® antibody CDR-L3 sequence is preferred but not sufficient to retain HER2 binding. This is consistent with the report that the Herceptin® antibody CDR-L3 is the most important LC CDR for HER2 binding (Kelley and O'Connell, Biochemistry 32: 6828 1993). Representative VEGF-binding pure lines were expressed as Fab and IgG proteins (Table 2). Table 2. Representative antibodies isolated from the light chain library of Herceptin® antibodies (SEQ ID NOS: 12-23). CDR-L1 CDR-L2 CDR-L3 specificity KD(nM) 2 8 2 9 3 0 3 0 a 3 0 b 3 0 c 3 0 d 3 1 3 2 3 3 5 0 5 1 5 2 5 3 9 1 9 2 9 3 9 3 a 9 3 b 9 4 Herceptin^ Γ) VN . - - TAVSASFHY ΐ '1' HER2 0.1 3-la NVWDWVPASSGWYIA VEGF 15 bHl Π TPRSISGYV w G s YHY '1' 1 VEGF/HER2 300/26 bH3 Π r GLG s V w A s YHYT '1' 19,000/8 bH4 DIRSG s V w G s YHYT r 3,500/11 3 The difference between the Herceptin® antibody and the Herceptin® antibody is shown in bold. To demonstrate that these antibodies specifically bind to their cognate antigens and do not interact non-specifically with other proteins, we demonstrate undetectable binding to a group of mammalian cell lysates and non-antigenic proteins. This assay confirmed the monospecific and bispecificity of purified IgG or Fab (Figure 6). The equilibrium binding affinity (KD) of a monospecific antibody derived from an LC library is in the range of 15 to 150 nM. The bispecific antibody binds to the new antigen (i.e., VEGF) with a high nM to low affinity and binds HER2 with low ηΜ affinity (Table 2). Among the antibodies shown in Table 2, antibody bH1 exhibited the highest bispecific affinity for two different protein antigens VEGF (KD = 300 nM) and HER2 (KD = 26 nM). Materials 142552.doc -122- 201011047 The enzyme and M13-K07 adjuvant sputum system was from New England Biolabs. E. coli XLl-Blue is from Stratagene. Bovine serum albumin (BSA), ovalbumin and Tween 20 lines were from Sigma. Neutral streptavidin, tropin and Superblock are from Pierce. The immobilized protein G and the anti-Μ13-conjugated horseradish peroxidase (HRP) line were from GE Healthcare (Piscataway, NJ). The Maxisorp immunoculture tray was from NUNC (Roskilde, Denmark). The tetramethylbenzidine (TMB) substrate is from Kirkegaard and Perry Laboratories (Gaithersburg, MD). All protein antigen lines were generated by a research group of Genentech, Inc. DNA degeneracy is indicated using the IUB code and, unless otherwise indicated, indicates a molar mixture: N=A/C/G/T, D=A/G/T, V=A/C/G, B=C /G/T, H=A/C/T, K=G/T, M=A/C, R=A/G, S=G/C, W=A/T, Y=C/T.
例如,在某些隨機化位置處,由編碼所有20種天然胺基 酸之簡併NNK密碼子(N=A/T/G/C,K=G/T,等莫耳比)置 換野生型密碼子。XYZ密碼子係指在密碼子三聯體之每一 位置處具有不等核苷酸比之密碼子。X含有38% G、19% A、26% T及 17% C ; Y含有 31% G、34% A、17% T及 18% C ;且Z含有24% G及76% C。 用於文庫建構之噬菌粒載體 使用標準分子生物學技術進行載體建構。建構三個模板 用於庫產生。所有模板均為基於經修飾人類化4D5(第8型) 之重鏈庫中所用之質體PV0354的衍生物(Lee等人, 2004a)。 藉由將2C4重鏈可變域選殖至含有鹼性磷酸酶啟動子 142552.doc -123- 201011047 (Lowman等人,1991)及Fab之輕鏈與重鏈兩者之stll分泌信 號的pV0354-Fab-C載體中來建構2C4 Fab-C模板噬菌粒 pJB0290。其被工程改造而於重鏈可變域1之C-末端含有單 一半胱胺酸以允許如前所述的2C4 Fab之二價Ml3噬菌體呈 現(Lee等人,2004b)»使用Kunkel等人之方法(Kunkel等 人,1987),藉由定點突變誘發將2C4輕鏈CDR引入Fab_e 載體中。於輕鏈之C-末端添加抗原決定基標籤(gD標 籤)(Lasky 及 Dowbenko,1984)以便如(Sidhu 等人,2004)所 述實現對呈現程度之測定。藉由將經高度呈現之重鏈可變 域選殖至pV0354-Fab-C中而產生Fabl2-G庫模板PV1283, 且修飾輕鏈可變域以含有Fab-12(人類化A4.6.1,一種抗 VEGF抗體)之CDR-L3。經高度呈現之VH係選自Fab庫,該 文庫使用 CDR-L3 轉化成 Fab-12(Y9〗STVPW96 ; SEQ ID NO:24)之獄搶丙胺酸掃描突變誘發(Liang等人,2006 ; Vajdos等人,2002),經由針對固定抗gD抗體進行淘選來 隨機化G6 Fab之重鏈CDR殘基。於M13噬菌體粒子表面上 呈現二價4(15(1^-尺660)8〇?¥之嗤菌粒卩\^13 84的設計及建構 係自先前所述之模板pS201 8修改而來(Sidhu等人,2004)。 seFv片段在輕鍵與重鍵之間的連接子區中含有gD抗原決定 基標籤。LC構架殘基Arg66經突變為Gly66,其為在95%以 上天然κ輕鏈中於此位置普遍存在之殘基。如Kelley及For example, at some randomized positions, the wild type is replaced by degenerate NNK codons encoding all 20 natural amino acids (N=A/T/G/C, K=G/T, etc. molar ratio). a. The XYZ codon refers to a codon having a unequal nucleotide ratio at each position of the codon triplet. X contains 38% G, 19% A, 26% T and 17% C; Y contains 31% G, 34% A, 17% T and 18% C; and Z contains 24% G and 76% C. Phagemid vectors for library construction Vector construction was performed using standard molecular biology techniques. Construct three templates for library generation. All templates are derivatives based on the plastid PV0354 used in the modified humanized 4D5 (type 8) heavy chain library (Lee et al., 2004a). By placing the 2C4 heavy chain variable domain to pV0354- containing the alkaline phosphatase promoter 142552.doc-123-201011047 (Lowman et al., 1991) and the stll secretion signal of both the light and heavy chains of Fab The 2C4 Fab-C template phagemid pJB0290 was constructed in a Fab-C vector. It was engineered to contain a monocysteine at the C-terminus of the heavy chain variable domain 1 to allow for the presentation of the bivalent Ml3 phage of 2C4 Fab as previously described (Lee et al., 2004b)» using Kunkel et al. The method (Kunkel et al., 1987) induced the introduction of the 2C4 light chain CDR into the Fab_e vector by site-directed mutagenesis. An epitope tag (gD tag) was added to the C-terminus of the light chain (Lasky and Dowbenko, 1984) to achieve a measure of the degree of presentation as described (Sidhu et al., 2004). The Fabl2-G library template PV1283 was generated by cloning the highly expressed heavy chain variable domain into pV0354-Fab-C, and the light chain variable domain was modified to contain Fab-12 (humanized A4.6.1, one CDR-L3 of anti-VEGF antibody). The highly expressed VH line is selected from the Fab library, which was transformed with Fab-12 (Y9〗STVPW96; SEQ ID NO: 24) using the CDR-L3 to induce alanine scanning mutation induction (Liang et al., 2006; Vajdos et al. Human, 2002), randomized heavy chain CDR residues of G6 Fab via panning against immobilized anti-gD antibodies. The design and construction of the divalent 4 (15(1^-foot 660)8〇?¥嗤嗤粒卩\^13 84 on the surface of the M13 phage particle was modified from the template pS201 8 described previously (Sidhu Et al., 2004) The seFv fragment contains a gD epitope tag in the linker region between the light and heavy bonds. The LC framework residue Arg66 is mutated to Gly66, which is in more than 95% of the native kappa light chain. Residues that are ubiquitous in this location, such as Kelley and
Connell(Biochemistry 32:6828,1993)中所述,突變R66G僅 使Herceptin®抗體對HER2之結合親和力略微減少(<2倍)。 文庫模板之CDR序列概括於圈3中。 142552.doc -124· 201011047 文庫建構As described in Connell (Biochemistry 32: 6828, 1993), the mutation R66G only slightly reduced the binding affinity of the Herceptin® antibody to HER2 (<2 fold). The CDR sequences of the library template are summarized in circle 3. 142552.doc -124· 201011047 Library Construction
使用如(Sidhu等人,2004)所述之寡核苷酸定向突變誘發 產生噬菌體呈現庫。文庫模板載體含有嵌埋於CDR-L1中 之終止密碼子(TAA),其在突變誘發反應期間使用黏接於 編碼CDR-L1、CDR_L3(所有庫)、CDR-L2(L1/L2/L3-A、-B、 -C、+L4-D)及輕鏈構架 3(L1/L4及 L1/L2/L3+L4-D)之序列 上的簡併寡核苷酸來修復。根據Kunkel等人之方法 (Kunkel等人,1987)進行文庫突變誘發反應。關於文庫之 輕鏈CDR設計展示於圖1中,其概括在不同文庫之每一位 置處所用之簡併密碼子。對於每一 CDR而言,以特定比率 混合三個或四個寡核苷酸以編碼為隨機化而乾向之每一位 置處的所需頻率之胺基酸類型(圖4)。將募核苷酸以不同比 率組合以微調多樣性,從而反映天然輕鏈κ序列中所選位 置處之胺基酸頻率。對於CDR1而言,以1:3:1之比率混合 在位置91至94處含有密碼子之三個寡核苷酸:CAT NNK NNK RST(SEQ ID NO:25) ' KMT XYZ XYZ RST(SEQ ID NO:26)或 DGG XYZ XYZ RST(SEQ ID NO:27)。XYZ 為 NNK之變體,其在每一位點具有相等比例之A/G/T/C以減 少脂族疏水性胺基酸之覆蓋範圍(Lee等人,J. Mol_ Biol. 340:1073,2004)。對於CDR2而言,以1:1:2:10之比率混合 在位置50至53處含有密碼子之四個寡核苷酸:NNK GST TCC NNK(SEQ ID NO:28) ' TGG GST TCC NNK(SEQ ID NO:29)、KGG GST TCC TMT(SEQ ID NO:30)或NNK GST TCC TMT(SEQ ID NO:31)。對於 CDR3 而言,每一長度為 142552.doc -125· 201011047Phage display libraries were generated using oligonucleotide directed mutagenesis as described (Sidhu et al., 2004). The library template vector contains a stop codon (TAA) embedded in CDR-L1, which is ligated to encode CDR-L1, CDR_L3 (all libraries), CDR-L2 (L1/L2/L3- during mutation-inducing reaction) Degenerate oligonucleotides on the sequences of A, -B, -C, +L4-D) and light chain framework 3 (L1/L4 and L1/L2/L3+L4-D) were repaired. The library mutation-inducing reaction was carried out according to the method of Kunkel et al. (Kunkel et al., 1987). The light chain CDR design for the library is shown in Figure 1, which summarizes the degenerate codons used at each position in the different libraries. For each CDR, three or four oligonucleotides were mixed at a specific ratio to encode the amino acid type of the desired frequency at each of the randomized and dry directions (Figure 4). The nucleotides are combined at different ratios to fine tune the diversity to reflect the amino acid frequency at the selected position in the native light chain kappa sequence. For CDR1, three oligonucleotides containing a codon at positions 91 to 94 were mixed at a ratio of 1:3:1: CAT NNK NNK RST (SEQ ID NO: 25) ' KMT XYZ XYZ RST (SEQ ID NO: 26) or DGG XYZ XYZ RST (SEQ ID NO: 27). XYZ is a variant of NNK that has an equal proportion of A/G/T/C at each site to reduce the coverage of aliphatic hydrophobic amino acids (Lee et al., J. Mol_ Biol. 340: 1073, 2004). For CDR2, four oligonucleotides containing a codon at positions 50 to 53 were mixed at a ratio of 1:1:2:10: NNK GST TCC NNK (SEQ ID NO: 28) ' TGG GST TCC NNK ( SEQ ID NO: 29), KGG GST TCC TMT (SEQ ID NO: 30) or NNK GST TCC TMT (SEQ ID NO: 31). For CDR3, each length is 142552.doc -125· 201011047
在位置28至33處含有密碼子之三個募核苷酸的1:1:2比率之 混合物:G70A70C70 RTT NNK NNK TAC STA(SEQ IDA mixture of 1:1:2 ratios of three nucleotides containing a codon at positions 28 to 33: G70A70C70 RTT NNK NNK TAC STA (SEQ ID
NO:32) ' G7〇A7〇C7〇 RTT NNK NNK DGG STA(SEQ IDNO:32) ' G7〇A7〇C7〇 RTT NNK NNK DGG STA(SEQ ID
NO:33)或 G70A70C70 RTT NNK NNK NMT STA(SEQ ID NO:34)。G7〇A7〇C7〇為允許70%的指定核苷酸及各10%的其 他三種核苷酸編碼約50%之Glu及約50%之其他胺基酸的 「軟」密碼子。 對大量具有κ LC之代表性抗體的結構分析顯示CDR1具 有最寬的構形範圍,此可能為環長度(位置24與34之間的 11至17個殘基)變化之結果。不同之CDR-L1長度(長度:11 至16)因此包括於文庫中。天然CDR-L3之長度亦有變化(長 度:位置89至96之間的7至10個殘基),其係由文庫設計來 反映(長度:8至10 ;圖4)。 圖1展示輕鏈天然多樣性與實際文庫設計之比較。將每 個文庫之突變誘發產物合併於一個反應中且被電穿孔至補 充有K07輔助噬菌體之大腸桿菌SS320細胞中,且於30°C 下生長隔夜(Lee等人,J. Mol· Biol. 340:1073,2004)。在 每一電穿孔反應中使用約1011個細胞及約5至10 pg DNA。 將文庫噬菌體純化(Sidhu等人,J. Mol. Biol. 338:299, 2004)。轉型體之數目介於1〇9至l〇1G之範圍内。以ELISA結 合檢定測定完整Fab或scFv於噬菌體表面上之呈現程度, 其中測試96個自各文庫隨機選擇出之純系結合抗gD抗體的 能力。呈現程度在5%至25%之範圍内(圈2)。呈現抗體之 純系的25°/◦保持HER2結合。對大約150個呈現純系進行定 142552.doc -126- 201011047 序以便與設計多樣性相比檢驗實際文庫多樣性。由於不完 全突變誘發(CDR-1中之模板終止密碼子確保所表現之scFv 中此CDR 100%突變),一部分(約30%)經功能性呈現之文 庫成員保留Herceptin®抗體CDR-L2及/或CDR-L3序列。將 此等者自實際文庫多樣性之序列分析中排除。在大部分隨 機化位置處,呈現純系之噬菌體呈現庫的多樣性並未顯著 偏離設計多樣性(ρ>0·05,優勢比測試(odds rati〇 test))。 例外為CDR-L1之位置29(其中發現vai與ne相比略微被過 雜度表示(P=〇_〇〇5))及CDR-L2之位置51與53(其中Gly及Ser分 別比Ala及Tyr更普遍(p<0.01))。 實例2.評估文庫效能 文庫揀選及篩檢 當在4至5輪楝選後可分離出與各種蛋白抗原特異性結合 之抗體時’則認為某一文庫係功能性的。已知多種蛋白標 靶允許功能性固定以供文庫淘選之用且已自經確認噬菌體 呈現庫產生特異性抗體(Fellouse等人,2005)(Lee等人, 2004a)。為評估各組文庫,吾人選擇該等標靶之子集用於 選擇(圈2)。使該等文庫經受初輪結合選擇,其中抗抗 體或蛋白L作為捕捉標靶以去除已刪除Fab/scFv基因之純 系,繼而經受4至5輪抗原選擇。或者,在未經抗gD或蛋白 L預先選擇之情況下使其直接經受標靶結合選擇。以抗原 (5 pg/ml)塗覆NUNC 96孔Maxisorp培養盤隔夜,且以交替 阻斷劑阻斷1小時(圖7)。在第一選擇週期中,將ι〇η個噬 菌體/毫升之噬菌體溶液添加至經塗覆之免疫培養盤中。 142552.doc -127· 201011047 在各輪選擇中,減低噬菌體濃度。在免疫培養盤上培育噬 菌體溶液以允許結合至固定化抗原之後,將培養盤以 PBS、0.5% Tween 20重複洗滌。為增加嚴格性,在各輪選 擇中減少培育時間(第1輪4小時,第2輪3小時,第3輪3小 時,第4輪2小時,第5輪1_75小時)且增加洗滌次數(圖7)。 將所結合之噬菌體以0.1 M HC1溶離30分鐘且以1.0 M Tris 鹼中和溶離物。計算每一經抗原塗覆之免疫培養盤孔之噬 菌體回收率且與未塗覆抗原之經阻斷孔的噬菌體回收率相 比較以研究呈現特異性地結合標乾抗原之Fab或scFv之嗤 菌體純系的富集(圈7)。使經溶離之噬菌體在大腸桿菌中擴 增且用於其他輪之選擇。選擇來自第4輪及第5輪之隨機純 系以供篩檢且使用噬菌體ELISA進行檢定,其中將與標靶 及抗gD之結合與非相關蛋白(BSA)之結合相比較以檢驗非 特異性結合。認為結合抗gD抗體及標靶但不結合非特異性 蛋白之純系為特異性陽性的。庫L1/L3、L1/L4、 L1/L2/L3-A、Ll/L2/L3-B_l 及 Ll/L2/L3-B_2 不產生任何特 異性陽性純系,而庫L1/L2/L3-C及L1/L2/L3+L4-D使分離 針對標靶抗原之特異性抗體成為可能。 例如,使用噬菌體ELISA檢定第四輪之隨機純系,其中 將經個別擴增之純系與標靶及HER2之結合與非標靶蛋白 (BSA)之結合相比較以測試結合特異性。為富集維持HER2 結合之噬菌體純系,使來自第三輪及第四輪VEGF或DR5 選擇之經溶離噬菌體擴增且於經HER2塗覆之孔上經受另 一輪選擇。藉由PCR擴增陽性純系之VL及VH區且進行定 142552.doc -128- 201011047 序。 hFC、hVEGF及hDR5-lf之命中率分別為63%、77%及 85%。如(Sidhu等人,2004)所述藉由PCR擴增陽性純系之 VL區且進行定序。陽性特異性結合物之DNA序列分析揭示 獨特純系之百分比為51%(hFC)、55%(hVEGF)及 6.1%(hDR5-lf)。獨特hVEGF結合純系之序列概括於圖8 中。 hVEGF結合純系之組合培養盤及溶液選擇NO: 33) or G70A70C70 RTT NNK NNK NMT STA (SEQ ID NO: 34). G7〇A7〇C7〇 is a “soft” codon that allows 70% of the designated nucleotides and 10% of the other three nucleotides to encode about 50% of Glu and about 50% of other amino acids. Structural analysis of a large number of representative antibodies with κ LC revealed that CDR1 has the broadest range of conformation, which may be the result of changes in loop length (11 to 17 residues between positions 24 and 34). Different CDR-L1 lengths (length: 11 to 16) are therefore included in the library. The length of the native CDR-L3 also varies (length: 7 to 10 residues between positions 89 and 96), which is reflected by library design (length: 8 to 10; Figure 4). Figure 1 shows a comparison of natural diversity of light chains with actual library design. The mutation-inducing products of each library were combined in one reaction and electroporated into E. coli SS320 cells supplemented with K07 helper phage and grown overnight at 30 °C (Lee et al., J. Mol. Biol. 340) : 1073, 2004). About 1011 cells and about 5 to 10 pg of DNA were used in each electroporation reaction. The library phage was purified (Sidhu et al., J. Mol. Biol. 338:299, 2004). The number of transitions ranges from 1〇9 to l〇1G. The extent of presentation of intact Fab or scFv on the surface of the phage was determined by ELISA binding assay, in which 96 of the purely lined anti-gD antibodies were randomly selected from each library. The degree of presentation is in the range of 5% to 25% (circle 2). The pure 25°/◦ of the antibody is present to maintain HER2 binding. The sequence of 142552.doc -126-201011047 was determined for approximately 150 rendered lines to verify actual library diversity compared to design diversity. Due to incomplete mutation induction (the template stop codon in CDR-1 ensures 100% mutation of this CDR in the scFv expressed), a portion (about 30%) of the functionally presented library members retain the Herceptin® antibody CDR-L2 and / Or CDR-L3 sequence. These were excluded from the sequence analysis of actual library diversity. At most of the randomized positions, the diversity of the phage display pools presenting pure lines did not significantly deviate from the design diversity (ρ > 0.05, odds rati〇 test). The exception is position 29 of CDR-L1 (where vai is found to be slightly overextended (p=〇_〇〇5) compared to ne) and positions 51 and 53 of CDR-L2 (where Gly and Ser are respectively compared to Ala and Tyr is more common (p < 0.01)). Example 2. Evaluating library potency Library sorting and screening When an antibody that specifically binds to various protein antigens can be isolated after 4 to 5 rounds of selection, a library is considered functional. A variety of protein targets are known to allow for functional immobilization for library panning and specific antibodies have been generated from validated phage display libraries (Fellouse et al, 2005) (Lee et al, 2004a). To evaluate each set of libraries, we selected a subset of these targets for selection (Circle 2). The libraries are subjected to a first round of binding selection wherein the anti-antibody or protein L serves as a capture target to remove the pure line of the deleted Fab/scFv gene, followed by 4 to 5 rounds of antigen selection. Alternatively, it is directly subjected to target binding selection without pre-selection of anti-gD or protein L. NUNC 96-well Maxisorp plates were coated with antigen (5 pg/ml) overnight and blocked with alternating blockers for 1 hour (Figure 7). In the first selection cycle, ι η phage/ml of the phage solution was added to the coated immunoculture dish. 142552.doc -127· 201011047 Reduce phage concentration in each round of selection. After incubating the phage solution on the immunoculture plate to allow binding to the immobilized antigen, the plate was washed repeatedly with PBS, 0.5% Tween 20. In order to increase the stringency, reduce the incubation time in each round of selection (4 hours in the first round, 3 hours in the second round, 3 hours in the third round, 2 hours in the 4th round, 1_75 hours in the 5th round) and increase the number of washings (Figure 7). The bound phages were lysed with 0.1 M HCl for 30 minutes and the lysate was neutralized with 1.0 M Tris base. The phage recovery of each antigen-coated immunoculture well was calculated and compared to the phage recovery of the uncoated antigen-blocked wells to study the presence of Fab or scFv cells that specifically bind to the standard antigen. Pure enrichment (circle 7). The lysed phage were expanded in E. coli and used for other rounds of selection. Random pure lines from rounds 4 and 5 were selected for screening and assayed using phage ELISA, where binding to the target and anti-gD was compared to binding of non-related protein (BSA) to test for non-specific binding. . A pure line that binds to an anti-gD antibody and a target but does not bind to a non-specific protein is considered to be specifically positive. The libraries L1/L3, L1/L4, L1/L2/L3-A, Ll/L2/L3-B_l and Ll/L2/L3-B_2 do not produce any specific positive pure lines, while the library L1/L2/L3-C and L1/L2/L3+L4-D makes it possible to isolate antibodies specific for the target antigen. For example, a fourth round of random lines was assayed using phage ELISA, in which the binding specificity was tested by comparing the binding of the individual amplified lines to the binding of the target and HER2 to the binding of the non-target protein (BSA). For enrichment of the HER2-binding phage line, the lysed phage from the third and fourth rounds of VEGF or DR5 selection were amplified and subjected to another round of selection on HER2 coated wells. The VL and VH regions of the positive pure lines were amplified by PCR and subjected to the 142552.doc-128-201011047 sequence. The hit rates of hFC, hVEGF and hDR5-lf were 63%, 77% and 85%, respectively. The positively pure VL region was amplified by PCR and sequenced as described (Sidhu et al., 2004). DNA sequence analysis of positive specific binders revealed that the percentage of unique pure lines was 51% (hFC), 55% (hVEGF) and 6.1% (hDR5-lf). The sequence of the unique hVEGF binding line is summarized in Figure 8. Combination of hVEGF and pure lines and solution selection
觀察到繼四輪揀選後hVEGF結合純系之高多樣性。為識別 高親和性hVEGF結合純系,在第四次基於培養盤之揀選後採 用基於溶液之選擇方法。將50 nM經生物素標記之hVEGF與 自第4輪於固定化抗原上選擇而繁殖之噬菌體一起培育。於 室溫下在震盪下培育2小時之後,於經中性鏈親和素塗覆且 經阻斷之免疫培養盤上捕捉結合hVEGF之噬菌體,繼而重複 洗滌。如前所述將噬菌體純系溶離、篩檢且定序。來自最後 溶液選擇步驟之hVEGF結合純系的序列見於圖9中。 自庫L1/L2/L3-C及L1/L2/L3+L4-D分離雙特異性純系 用於庫L1/L2/L3-C及L1/L2/L3+L4-D之文庫模板為自 hu4D5抗體修改而來之scFv片段,其以高親和性結合 Her2。藉由CDR區之丙胺酸掃描突變誘發定位hu4D5-5之 用於Her2結合的功能性互補位,其顯示出重鏈殘基供應大 部分之結合自由能,而個別輕鏈殘基之供應程度則較小 (Kelley 及O'Connell,1993)。對於與人類Her2-ECD複合之 Herceptin®抗體Fab的原子結構之分析表明,儘管輕鏈涉 142552.doc -129- 201011047 及產生抗原接觸,但重鏈提供大部分與抗原之結構界面 (Cho等人,Nature 421:756, 2003)。吾人觀察到,構建於 Herceptin®抗體模板上之功能性輕鏈庫的一些成員保持 Her2結合能力。在嘗試自功能性庫L1/L2/L3-C及 L1/L2/L3+L4-D分離能夠結合Her2以及第二抗原之雙特異 性scFv片段時,使用兩種策略。在一種方法中,藉由 ELIS A自來自先前所述之標靶抗原選擇的陽性純系中篩檢 出保持Her2結合之陽性純系。能夠結合Her2之特異性陽性 純系的百分比視第二抗原特異性而變化。僅1/61之獨特 hFc特異性陽性純系仍結合Her2(1.6%),30M1之獨特 hVEGF結合純系仍結合Her2(73%),且2/5之獨特hDR5結合 物仍結合Her2(40°/〇)。此外,採用基於選擇之方法藉由自 hVEGF及hDR5結合抗體池中選擇Her2結合物來分離雙特 異性抗體。藉由在經Her2塗覆(5 pg/ml)且經BSA阻斷之 Maxisorp免疫培養盤上培育2xl013個噬菌體/毫升1小時來 使來自第4輪標靶抗原揀選之溶離物經受另一輪選擇。將 培養盤以PBS、0_5% Tween 20洗滌15次,且如前所述溶離 所結合之噬菌體。選擇隨機純系且檢定Her2、抗gD及標靶 結合,並與非相關蛋白(BSA)之非特異性結合相比較。確 認所有192種經測試之純系為特異性陽性,且如前所述進 行定序。定序揭示94種獨特序列。總而言之,該方法在94 種所測試之獨特純系中產生94種Her2/hVEGF雙特異性純 系(100%)(圖8)。來自兩種分離策略之所有經分離獨特 hVEGF/Her2雙特異性抗體的序列概括於圖10A及10B中。 142552.doc -130- 201011047 喪失所有與Her2之可偵測結合的經分離純系之序列展示於 圈11中。在具有雙重特異性之純系中,幾乎所有純系均保 留Herceptin®抗體CDR-L3,此使得維持CDR-L3對於維持 HER2結合至關重要成為可能。在hDR5之情況下,2/7之獨 特Her2結合純系具雙特異性(29%,12個經定序純系)。雙重 特異性純系之一的CDR-L3具有一些同源變化。 高產量表徵hVEGF結合純系A high diversity of hVEGF-binding pure lines was observed following four rounds of sorting. To identify high-affinity hVEGF-binding pure lines, a solution-based selection method was employed after the fourth plate-based sorting. 50 nM biotinylated hVEGF was incubated with phage selected for propagation from the fourth round of immobilized antigen. After incubation for 2 hours at room temperature under shaking, the hVEGF-binding phage were captured on a neutral streptavidin-coated and blocked immunoculture dish, followed by repeated washing. The phage is purely lysed, screened and sequenced as previously described. The sequence of the hVEGF-binding pure line from the final solution selection step is shown in Figure 9. Separate bispecific pure lines from library L1/L2/L3-C and L1/L2/L3+L4-D for library L1/L2/L3-C and L1/L2/L3+L4-D library template from hu4D5 The scFv fragment was modified from the antibody, which binds Her2 with high affinity. The functional complement of Her2 binding for hu4D5-5 was induced by alanine scanning mutation in the CDR regions, which showed that the heavy chain residues supply most of the binding free energy, while the supply of individual light chain residues is Smaller (Kelley and O'Connell, 1993). Analysis of the atomic structure of the Herceptin® antibody Fab complexed with human Her2-ECD showed that although the light chain involved 142552.doc-129-201011047 and produced antigenic contact, the heavy chain provided most of the structural interface with the antigen (Cho et al. , Nature 421:756, 2003). We observed that some members of the functional light chain library constructed on the Herceptin® antibody template retain Her2 binding ability. Two strategies were used when attempting to separate the bispecific scFv fragment capable of binding Her2 and the second antigen from the functional libraries L1/L2/L3-C and L1/L2/L3+L4-D. In one method, a positive pure line that retains Her2 binding is screened by ELIS A from a positive pure line selected from the target antigens previously described. The percentage of specific positive lines capable of binding to Her2 varies depending on the specificity of the second antigen. Only 1/61 of the unique hFc-specific positive line still binds to Her2 (1.6%), 30M1's unique hVEGF-binding line still binds to Her2 (73%), and 2/5 of the unique hDR5 conjugate still binds Her2 (40°/〇) ). In addition, a bispecific antibody was isolated by selection of a Her2 conjugate from a pool of hVEGF and hDR5 binding antibodies using a selection-based approach. The isolate from the 4th round of target antigen sorting was subjected to another round of selection by incubating 2xl013 phage/ml for 1 hour on a Heriso coated immunoculture plate coated with Her2 (5 pg/ml). The plate was washed 15 times with PBS, 0_5% Tween 20, and the bound phages were dissolved as described above. Random random lines were selected and Her2, anti-gD, and target binding were assayed and compared to non-specific binding of non-related proteins (BSA). All 192 tested pure lines were confirmed to be specific positive and sequenced as previously described. Sequence reveals 94 unique sequences. In summary, the method produced 94 Her2/hVEGF bispecific lines (100%) in 94 unique lines tested (Figure 8). The sequences of all isolated unique hVEGF/Her2 bispecific antibodies from both isolation strategies are summarized in Figures 10A and 10B. 142552.doc -130- 201011047 The sequence of the isolated pure line that lost all detectable binding to Her2 is shown in circle 11. In the pure line with dual specificity, almost all of the pure lines retain the Herceptin® antibody CDR-L3, which makes it possible to maintain CDR-L3 essential for maintaining HER2 binding. In the case of hDR5, 2/7 of the unique Her2 binding pure line was bispecific (29%, 12 sequenced lines). One of the dual specific lines of CDR-L3 has some homologous changes. High yield characterization of hVEGF binding pure line
使用96孔格式之高產量單點競爭性ELISA(Sidhu等人, 2004)來篩檢對hVEGF具高親和性之純系及研究VEGFR1阻 斷概況。簡言之,於4°C下以2 gg/ml hVEGFi〇9塗覆 Maxisorp免疫培養盤隔夜,且以1 %(w/v)BS A阻斷1小時。 使大腸桿菌XLl-Blue中之噬菌粒純系生長於150 μΐ補充有 卡苯尼西林(carbenicillin)及Μ13-Κ07辅助噬菌體之2ΥΤ培 養液中;使培養物在震盪下於37°C下以96孔格式生長隔 夜。將含有噬菌體之培養物上清液於添加或未添加用於親 和性篩檢之 100 nM hVEGF109 的 PBST(具有0.05% Tween 20 及0.5%(w/v)BSA之PBS)中作五倍稀釋。對於受體阻斷篩檢 而言,在VEGFR1域l-3(Dl-3)及VEGFR1域2(D2)存在或不 存在下培育經hVEGF塗覆之孔,然後添加經五倍稀釋之噬 菌體上清液(Liang等人,2006 ; Wiesmann等人,1997)。 在室溫(RT)下培育1小時之後,將混合物轉移至經 hVEGF1()9塗覆之培養盤中且培育10分鐘。將培養盤以 PBT(具有0.05% Tween 20之PBS)洗滌且與於PBST中按 5000倍稀釋至1 nM之抗Ml3抗體辣根過氧化酶結合物一起 142552.doc -131- 201011047 培育30分鐘。洗滌培養盤,以TMB受質顯影大約五分鐘, 以1.0 Μ Η3Ρ〇4淬滅,且在450 nm下以分光光度法讀數。 在單點親和性檢定中,將在溶液相hVEGF! 〇9存在時之吸光 度與在溶液相hVEGF1()9不存在時之吸光度的比率用作親和 性之指標》低比率將指示大部分Fab噬菌體在初始培育階 段時結合至溶液相hVEGF109,且因此不能為固定化 hVEGF1()9所捕捉。頭41個獨特純系之高產量親和性檢定結 果概括於圈12中。類似地,對於阻斷檢定而言,低比率指 示純系與hVEGF109之結合由hVEGF109-VEGFRl相互作用所 阻斷,此表明某些純系在VEGF上與各自之VEGF受體片段 具有重疊之結合位點(抗原決定基)(圖13A及13B),且該等 純系可能呈現阻斷抗體。 高產量表徵雙特異性h VEGF/Her2純系 應用如前一部分中所述之相同原理來實現分離對hVEGF 及Her2具有高親和性之純系以供進一步表徵之用(圖 14A)。使用高產量單點競爭性ELISA,藉由以2 pg/ml hVEGF丨〇9及Her2-ECD於4°C下塗覆Maxisorp免疫培養盤隔 夜,繼而以l%(w/v)BSA阻斷1小時來篩檢出對hVEGF及 Her2具高親和性之純系。如前所述使在先前之單點ELISA 篩檢中識別為雙特異性之噬菌體純系生長且在添加及不添 加20 nM Her2-ECD及50 nM hVEGF之情況下培育。於室溫 下培育1小時之後,將溶液施加至經塗覆之免疫培養盤且 如前一部分中所述記錄及分析結合信號。選擇對hVEGF及 Her2兩者具有低比率之純系以用於進一步表徵。選擇在單 142552.doc -132- 201011047 點競爭性ELISA中產生最低信號比之hVEGF特異性及 hVEGF/Her2雙特異性噬菌體純系以及來自初始單點ELISA 篩檢之DR5結合及DR5/Her2雙特異性噬菌體純系及來自組 合培養盤及溶液選擇之VEGF結合純系以便藉由競爭性 ELISA作親和性量測。藉由在25 ml補充有卡苯尼西林及 K07輔助噬菌體之2YT培養物中於30°C下生長隔夜而自單 一群落繁殖噬菌體純系。首先於PBST中連續稀釋藉由在 PEG/NaCl中沈澱而純化之噬菌體且測試其與經抗原塗覆之 培養盤的結合。在溶液結合檢定中使用產生50%至70%飽 和信號之稀釋液,其中首先將噬菌體與增加濃度之抗原一 起培育一至兩個小時,且隨後轉移至經抗原塗覆之培養盤 ' 歷時10至15分鐘以捕捉未結合之噬菌體。IC5Q係以在溶液A high yield single point competitive ELISA (Sidhu et al., 2004) in a 96-well format was used to screen for pure lines with high affinity for hVEGF and to study the VEGFR1 blockade profile. Briefly, Maxisorp immunoculture plates were coated overnight at 4 °C with 2 gg/ml hVEGFi〇9 and blocked with 1% (w/v) BS A for 1 hour. The phagemids in E. coli XLl-Blue were grown in 150 μL in 2 ΥΤ medium supplemented with carbenicillin and Μ13-Κ07 helper phage; the culture was shaken at 37 °C at 96 °C. The pore format grows overnight. The phage-containing culture supernatant was diluted five-fold in PBST (PBS with 0.05% Tween 20 and 0.5% (w/v) BSA) with or without the addition of 100 nM hVEGF109 for affinity screening. For receptor block screening, hVEGF-coated wells were incubated in the presence or absence of VEGFR1 domain l-3 (Dl-3) and VEGFR1 domain 2 (D2), and then added on a 5-fold diluted phage Clear liquid (Liang et al., 2006; Wiesmann et al., 1997). After incubation for 1 hour at room temperature (RT), the mixture was transferred to a hVEGF1()9 coated plate and incubated for 10 minutes. The plates were washed with PBT (PBS with 0.05% Tween 20) and incubated for 30 minutes with 5,000-fold diluted anti-Ml3 antibody horseradish peroxidase conjugate in PBST for 142552.doc-131-201011047. The plates were washed, developed with TMB for approximately five minutes, quenched at 1.0 Μ Η 3 Ρ〇 4, and read spectrophotometrically at 450 nm. In the single-point affinity assay, the ratio of the absorbance in the presence of the solution phase hVEGF! 〇9 to the absorbance in the absence of the solution phase hVEGF1()9 is used as an indicator of affinity. A low ratio will indicate the majority of the Fab phage. It binds to the solution phase hVEGF109 at the initial incubation stage and therefore cannot be captured by immobilized hVEGF1()9. The results of the first 41 unique pure line high yield affinity tests are summarized in circle 12. Similarly, for the blocking assay, a low ratio indicates that the binding of the pure line to hVEGF109 is blocked by the hVEGF109-VEGFR1 interaction, indicating that some of the pure lines have overlapping binding sites on the VEGF with the respective VEGF receptor fragments ( Antigenic determinants) (Figures 13A and 13B), and such pure lines may exhibit blocking antibodies. High Yield Characterization of Bispecific h VEGF/Her2 Pure Lines The same principles as described in the previous section were used to achieve isolation of pure lines with high affinity for hVEGF and Her2 for further characterization (Fig. 14A). High-yield single-point competitive ELISA was used to coat Maxisorp immunoculture plates overnight at 4 °C with 2 pg/ml hVEGF丨〇9 and Her2-ECD, followed by 1% (w/v) BSA for 1 hour. To isolate the pure lines with high affinity for hVEGF and Her2. Phage-only lines that were identified as bispecific in previous single-point ELISA screening were grown as described previously and were incubated with and without the addition of 20 nM Her2-ECD and 50 nM hVEGF. After incubation for 1 hour at room temperature, the solution was applied to the coated immunoculture dish and the binding signal was recorded and analyzed as described in the previous section. A pure line with low ratios for both hVEGF and Her2 was selected for further characterization. The lowest signal ratio hVEGF-specific and hVEGF/Her2 bispecific phage pure lines and the DR5 binding and DR5/Her2 bispecific from the initial single-point ELISA screening were selected in the single 142552.doc -132- 201011047 point competitive ELISA. Phage-pure lines and VEGF-binding pure lines from combinatorial plates and solution selection were used for affinity measurements by competitive ELISA. Phage pure lines were propagated from a single colony by growing overnight at 25 °C in 2 ml of 2YT culture supplemented with capnicillin and K07 helper phage. The phage purified by precipitation in PEG/NaCl was first serially diluted in PBST and tested for binding to the antigen coated culture plate. A dilution that produces a 50% to 70% saturation signal is used in the solution binding assay, wherein the phage is first incubated with the increased concentration of antigen for one to two hours and then transferred to the antigen coated plate '10 to 15 Minutes to capture unbound phage. IC5Q is in solution
結合階段時抑制50%之噬菌體與固定化抗原結合之抗原的 濃度來計算(Lee等人,2004a)。圖14B展示可用於計算來 自培養盤揀選策略之經分析hVEGF結合純系之IC5〇的曲 線。IC50值在22 nM至大於1 μΜ之範圍内(圖14B)。利用組 合培養盤及基於溶液之選擇而分離之hVEGF結合物的IC50 值在41 nM至226 nM之範圍内(圖9)。DR5結合純系之IC50 值在20 nM至大於1 μΜ之範圍内。hVEGF/Her2雙特異性純 系之IC50值概括於圖15中。 實例3.來自輕鏈庫之抗體之表徵 scFvs轉化為Fabs 為測試噬菌體上所呈現之scFvs'2轉化為Fabs是否影響該 庫中結合純系之親和性,選擇2種純系(3-7抗hVEGF及4-1 142552.doc -133- 201011047 抗hDR5)用於轉化為Fab且呈現於嗔菌體上。用限制酶消化 所選hVEGF及DR5 scFv片段之嗤菌粒DNA的VL區,該等酶 裂解編碼CDR-L1之區的DNA上游(五及編碼CDR_L3 之區的下游(尺p«I)。經消化之DNA片段藉由與M13基因_3 次要外鞘蛋白之C端域融合而接合至經没什用於嗟菌體呈 現Fab hu4D5的經類似消化之載體(PAP2009)中(Lee等人, 2004b)。所得雙順反子嗟菌粒含有C端與抗原決定基(gD) 標籤融合之輕鏈及C端與Ml 3次要外鞘蛋白(p3)之基因融合 之重鏈(VH及CH1)在驗性鱗酸醋酶啟動子控制下。第一開 放閱讀框架編碼一種由stI1分泌信號接著Fab4D5輕鏈(其中 CDRs 由 3-7抗 hVEGF及 4-1 抗 hDR5 scFv’2之 CDRs 置換)接著 gD-標籤抗原決定基組成之多肽。第二開放閱讀框架編碼 一種由以下組成之融合多肽:stH分泌信號、Fab4D5重 鏈、琥珀(TAG)終止密碼子、Gly/Ser連接子序列及g3蛋白 之c端域(cP3)。於經M13-K07共感染之大腸桿菌XL-1 Blue 中表現導致產生呈現3-7及4-1 scFv’2之Fab變體的Ml3噬菌 體。使用競爭性噬菌體ELIS As來估算噬菌體呈現之scFvs 及Fabs對hVEGF及hDR5之親和力之IC50值。來自兩種不同 格式之資料相當一致(資料未顯示)。 為於M13噬菌體表面上呈現bHl Fab,修飾質體pAP 2009以編碼bHIFab。使用bHl Fab之變體作為庫模板,其 分別在LC及HC庫之三個LC CDRs或三個HC CDRs中含有 終止密碼子(TAA)。如前所述建構各別重鏈及輕鏈丙胺酸 及同系物掃描庫(Vajdos等人,J. Mol· Biol. 320: 415, 142552.doc •134- 201011047 2002)。簡併性範圍由1χ105至1χ108,實際庫大小由6xl09 至4χ101()。如上所述建構各庫。針對固定化標靶(VEGF、 HER2-ECD、蛋白L或抗gD mlgG)進行兩至三輪選擇 (Vajdos等人,J. Mol. Biol· 320:415, 2002)。對於標靶結 合,藉由噬菌體ELIS A篩檢標靶結合純系,繼而進行DNA 定序及序列比對以計算各位置之野生型/突變型比率。對 於呈現及蛋白質摺疊效應,將VEGF及HER2結合純系之大 約100個獨特序列之序列分析的比率藉由除以100個以上抗 gD結合純系之序列計算之比率校正以得到F野4型/突*型值。 當僅Fab重鏈融合至噬菌體外殼時,噬菌體呈現融合至輕 鏈之gD標籤指示輕鏈與重鏈適當摺疊與締合。與此一致 • 地,舆Fab輕鏈上之非線性抗原決定基結合之蛋白L亦導致 • 與gD標籤選擇相類似之野生型/突變型比率。使用如 Vajdos 等人(J. Mol. Biol. 320:415,2002)中所述之式 AAG=RT/«(Ka,野生型/Ka,突變si jsRT/wfF野生型/突變型野生型/突變型The binding phase inhibits the concentration of antigen bound to the immobilized antigen by 50% of the phage (Lee et al., 2004a). Figure 14B shows a curve that can be used to calculate the analyzed hVEGF-binding pure IC5(R) from the culture dish sorting strategy. The IC50 value is in the range of 22 nM to more than 1 μΜ (Fig. 14B). The IC50 values for the hVEGF conjugates isolated using the combination plates and solution based selection ranged from 41 nM to 226 nM (Figure 9). The IC50 value of the DR5 binding pure line is in the range of 20 nM to more than 1 μΜ. The IC50 values for the hVEGF/Her2 bispecific strain are summarized in Figure 15. Example 3. Characterization of antibodies from the light chain library Conversion of scFvs to Fabs To test whether the conversion of scFvs'2 to Fabs presented on phage affects the affinity of the binding line in the library, two pure lines (3-7 anti-hVEGF and 4-1 142552.doc -133- 201011047 Anti-hDR5) was used to convert to Fab and present on bacillus. The VL region of the sputum granule DNA of the selected hVEGF and DR5 scFv fragments is digested with restriction enzymes, and the enzyme cleaves the upstream of the DNA encoding the region of CDR-L1 (five and downstream of the region encoding CDR_L3 (foot p«I). The digested DNA fragment is ligated to a similarly digested vector (PAP2009) that has not been used for Fab hu4D5 by the fusion of the C-terminal domain of the M13 gene _3 minor outer sheath protein (Lee et al. 2004b). The resulting bicistronic sputum granule contains a light chain fused to the C-terminus and the epitope (gD) tag and a heavy chain (VH and CH1) in which the C-terminus and the Ml 3 minor outer sheath protein (p3) are fused. Under the control of the auxin citrate promoter, the first open reading frame encodes a secretion signal from stI1 followed by a Fab4D5 light chain (wherein the CDRs are replaced by 3-7 anti-hVEGF and 4-1 anti-hDR5 scFv'2 CDRs) The polypeptide consisting of a gD-tag epitope, the second open reading frame encoding a fusion polypeptide consisting of the stH secretion signal, the Fab4D5 heavy chain, the amber (TAG) stop codon, the Gly/Ser linker sequence, and the g3 protein C-terminal domain (cP3). In E. coli XL-1 Blue co-infected by M13-K07 The performance resulted in the production of Ml3 phage displaying Fab variants of 3-7 and 4-1 scFv'2. Competitive phage ELIS As was used to estimate IC50 values of phage-presented scFvs and Fabs affinity for hVEGF and hDR5. The format data is quite consistent (data not shown). To present bHl Fab on the surface of M13 phage, the plastid pAP 2009 was modified to encode bHIFab. The variant of bHl Fab was used as a library template, which was respectively in the LC and HC pools. Stop SEQ ID NO: 142552.doc •134- 201011047 2002). The degeneracy ranged from 1χ105 to 1χ108, and the actual library size ranged from 6xl09 to 4χ101(). Each library was constructed as described above. Targeted for immobilized targets (VEGF, HER2-ECD, protein L) Or anti-gD mlgG) for two to three rounds of selection (Vajdos et al, J. Mol. Biol. 320: 415, 2002). For target binding, phage ELIS A screening targets bind to the pure line, followed by DNA sequencing And sequence alignment to calculate wild type/mutation at each position Ratio. For presentation and protein folding effects, the ratio of sequence analysis of approximately 100 unique sequences of VEGF and HER2 binding to the pure line is corrected by dividing the ratio calculated by the sequence of more than 100 anti-gD binding lines to obtain F wild type 4 / Burst * value. When only the Fab heavy chain is fused to the phage coat, the phage exhibits a gD tag fused to the light chain indicating proper folding and association of the light and heavy chains. Consistent with this • The binding of protein L to the nonlinear epitope on the Fab light chain also results in a wild-type/mutant ratio similar to the gD-tag selection. AAG=RT/« (Ka, wild type/Ka, mutant si jsRT/wfF wild type/mutant wild type/mutation) as described in Vajdos et al. (J. Mol. Biol. 320:415, 2002) type
值轉化為AAG。The value is converted to AAG.
使文庫結合物表現為游離人類Fab及IgG 為準確地測定抗體之親和性、特異性及其他特性,選擇 在競爭ELISA實驗中展現最高親和性之各特異性組的代表 性純系以用於表現為游離Fab及hlgG(圖16)。將輕鏈及重 鏈之可變域選殖至先前經設計用於大腸桿菌中之Fab表現 或哺乳動物細胞中之短暫人類IgG表現的載體中(Lee等 人,2004a)。藉由如(Presta等人,1997)所述使經轉型之 34B8大腸桿菌細胞於完整C.R.A.P.培養基中在30°C下生長 142552.doc -135- 201011047 26小時而產生Fab蛋白。藉由短暫轉染293細胞來表現 hlgG,且藉由蛋白A親和性層析法(Fuh等人,J. Biol. Chem. 273:11197,1998)來純化hlgG。藉由蛋白G親和性層 析法純化1 L大腸桿菌培養物。以PBS洗滌管柱,並以1〇〇 mM乙酸溶離Fab蛋白且針對PBS透析。如前所述於蛋白A 親和性管柱上,繼而藉由陽離子交換層析法純化4 L大腸 桿菌培養物(Muller等人,1998)。以分光光度法測定蛋白 質濃度。自小規模震盈燒瓶生長物純化而得之F ab的最終 產量一般為0.8至15 mg/1。在小規模培養物中IgG產量為中 等至高等產量,其為6.7至60 mg/1(圖17)。首先使用尺寸排 阻層析法及光散射法表徵經純化之蛋白質以確保蛋白質不 展現顯著的蛋白質聚集程度(<5%)。 簡言之,藉由ELISA針對結合各自之抗原篩檢所表現之 Fab及hlgG。發現除一種變異體以外之所有變異體均結合 其同源抗原。純系4-6在經轉化為Fab及hlgG時喪失hDR5結 合能力。使用標準ELISA(H3、H4_N、H4_D hlgG)及競爭 性ELISA(bHl、3-1、3-6、3-7 hlgG)測試針對較短形式之 hVEGF109而產生的所選抗VEGF純系與hVEGF165之結合。 使用G6 hIgG(Fuh等人,2006)作為陽性對照(圖18A及 18B)。如所預期,所有純系均結合hVEGF165。 為研究蛋白質聚集程度,如同經純化之Fab及IgG,藉由 尺寸排阻層析法(SEC)繼而藉由光散射(LS)分析來分析所 選純系。於PBS中檢定濃度為0.5 mg/ml(hIgG)及1 mg/ml(Fab) 之樣品。對於所有樣品而言,在既定濃度下觀察到最多 142552.doc •136· 201011047 5%之聚集程度(圖17),此係在吾人先前對於其他噬菌體呈 現源性抗體所觀測到之範圍内。純系3-6及3-7在預期時間 點未出現,此表明該等經重新格式化之1gG及Fab展現聚集 及/或與樹脂非特異性相互作用(資料未顯示)。將該等純系 自經歷進一步分析之純系集合中除去。Characterizing library conjugates as free human Fab and IgG To accurately determine the affinity, specificity, and other properties of antibodies, select representative pure lines of each specificity group that exhibit the highest affinity in a competition ELISA assay for performance Free Fab and hlgG (Figure 16). The variable domains of the light and heavy chains are housed in vectors previously designed for Fab expression in E. coli or transient human IgG expression in mammalian cells (Lee et al, 2004a). The Fab protein was produced by growing the transformed 34B8 E. coli cells in intact C.R.A.P. medium at 142552.doc -135-201011047 for 26 hours as described (Presta et al., 1997). hlgG was expressed by transient transfection of 293 cells, and hlgG was purified by protein A affinity chromatography (Fuh et al, J. Biol. Chem. 273: 11197, 1998). 1 L of E. coli culture was purified by protein G affinity stratification. The column was washed with PBS and the Fab protein was lysed with 1 mM NaOH and dialyzed against PBS. 4 L E. coli cultures were subsequently purified by cation exchange chromatography on Protein A affinity columns as previously described (Muller et al., 1998). The protein concentration was determined spectrophotometrically. The final yield of F ab obtained from the purification of small scale shock flask flasks is generally from 0.8 to 15 mg/1. The IgG yield in the small-scale culture was a medium to high yield of 6.7 to 60 mg/1 (Fig. 17). The purified protein was first characterized using size exclusion chromatography and light scattering to ensure that the protein did not exhibit significant levels of protein aggregation (< 5%). Briefly, Fab and hlgG expressed by binding to the respective antigens were screened by ELISA. All variants except one variant were found to bind to their cognate antigen. Pure line 4-6 loses hDR5 binding ability when converted to Fab and hlgG. Binding of selected anti-VEGF pure lines to hVEGF165 produced against shorter forms of hVEGF109 using standard ELISA (H3, H4_N, H4_D hlgG) and competitive ELISA (bH1, 3-1, 3-6, 3-7 hlgG) . G6 hIgG (Fuh et al., 2006) was used as a positive control (Figs. 18A and 18B). All pure lines bind to hVEGF165 as expected. To study the degree of protein aggregation, as with purified Fab and IgG, the selected pure lines were analyzed by size exclusion chromatography (SEC) followed by light scattering (LS) analysis. Samples at a concentration of 0.5 mg/ml (hIgG) and 1 mg/ml (Fab) were assayed in PBS. For all samples, a maximum of 142552.doc • 136· 201011047 5% aggregation was observed at a given concentration (Figure 17), which was within the range previously observed for other phage-derived antibodies. Pure lines 3-6 and 3-7 did not appear at the expected time points, indicating that the reformatted 1 gG and Fab exhibited aggregation and/or non-specific interaction with the resin (data not shown). These pure lines were removed from the pure collection that was subjected to further analysis.
為排除交叉反應性及非特異性結合’吾人以標準ELISA 檢定研究高濃度(1〇〇 nM)之所選hlgG與一組包括全細胞溶 胞物、同源抗原及同系物之固定化蛋白標靶的結合。除抗 原以外,吾人固定化hVEGF之鼠類變體以測試抗hVEGF純 系之交又物種反應性。詳言之’將該組蛋白固定於 Maxisorp培養盤上且以PBS中之1% BSA阻斷1小時。將 hlgG(或Fab)於PBST中稀釋至100或500 nM之濃度且轉移至 經塗覆之培養盤。在培育1小時之後’洗滌培養盤且與結 合HRP之蛋白A—起培育。藉由添加TMB受質使結合信號 顯影歷時大約5分鐘,以1 M H3P〇4淬滅且於A45〇下以分光 光度法讀數。所測試之hlgG特異性地結合至其抗原。純系 bHl及3-1展示與鼠類VEGF(mVEGF)之交又反應性(圖19)。 為測試雙特異性抗體bHl、H3(抗hVEGF/Her2)及D1(抗 hDR5/Her2)是否能同時結合其同源抗原或該等抗原是否競 爭抗體結合,以2 pg/ml之濃度固定hVEGF及hDR5。將固 定濃度之hlgG與Her2-ECD之連續稀釋液一起培育,繼而 捕捉hlgG於固定化抗原上。在每一情況下均發現Her2-ECD結合與結合至其他抗原相競爭(圖20)。 為準確測定IgG及Fab(亦即,自文庫分離之抗hVEGF及 142552.doc -137- 201011047 抗hVEGF/Her2 Fab及IgG)之親和性及研究即時結合概況, 吾人使用於BIAcoreTM-3000(BIAcore,Uppsala, Sweden)機 器上視所研究之分析物而定以40至300反應單位(RU)之固 定化 hVEGF、mVEGF、DR5 及 Her2-ECD CM5 感應晶片進 行的表面電漿共振(SPR)檢定。如(Chen等人,1999)所述 進行固定化。為使二價IgG分析物之親和力效應最小化, 在該等情況下使較低密度之配位體靶向於感應晶片上》以 22至30 μΐ/分鐘之速度注射大約低於預估KD(基於競爭 ELISA實驗)之10倍至高於預估KD之10倍濃度範圍内的漸 增濃度之樣品’且藉由減去參考流式細胞之RU來校正結 合反應。此外,對反應作雙重參考以藉由減去與樣品緩衝 液(具有0.05% Tween 20之PBS)—起注射之結合配位體之流 式細胞的RU來校正儀器偏差。對於Fab之動力學分析,使 用1:1朗繆爾結合模型來計算&011及A;〇ff。在必要(高分析物濃 度)時,應用具有質量轉移限制之1:1朗繆爾結合模型。對 於IgG分析物’使用具有或不具有質量轉移限制之二價分 析物結合模型(BIAcore評估軟體3 2)。在H3 hlgG、H4_N Fab及H4_DhIgG之情況下,對動力學結合模型之反應的擬 合不令人滿意。因此,應用穩態結合分析,其中將平衡反 應針對分析物濃度作圖。根據ECso估算KD。BIAcore結合 分析之概要可見於圖21中。發現hVEGF結合抗體3-1、3-6 及3-7之親和性在奈莫耳範圍内。所分析之雙特異性抗體 (bHl、H3、H4—N、H4—D)對於hVEGF顯示低微莫耳級至 微莫耳級之親和性。與此對比,對於Her2之親和性在8至 142552.doc -138· 201011047 59 nM(Fab)之範圍内。 為確定抗hVEGF結合物bHl、H3及Η4_Ν2輕鏈是否能結 合hVEGF,而與相關重鏈之序列無關,藉由將輕鏈可變域 選殖至2C4 Fab表現載體pJB0524中而將輕鏈可變域移植至 抗Her2 2C4 Fab上,由此置換2C4輕鏈可變域。如前所述 表現Fab。bHl/2C4及H3/2C4嵌合Fab未以可偵測之量表 現。分離出H4_N/2C4嵌合Fab蛋白且測試其與hVEGF(bHl 初始特異性)及Her2(bHl、2C4初始特異性)之結合。藉由 標準ELISA結合檢定未偵測到與hVEGF及Her2之結合(圖 22)。結果指示,bHl之重鏈為抗原結合所需。 抗hVEGF抗原決定基之比較To exclude cross-reactive and non-specific binding, we used a standard ELISA assay to study high concentrations (1〇〇nM) of selected hlgG with a set of immobilized protein targets including whole cell lysates, homologous antigens and homologs. Binding of the target. In addition to the antigen, we immobilized murine variants of hVEGF to test the anti-hVEGF pure line and species reactivity. In detail, the histones were immobilized on Maxisorp plates and blocked with 1% BSA in PBS for 1 hour. The hlgG (or Fab) was diluted to a concentration of 100 or 500 nM in PBST and transferred to a coated plate. The plate was washed after 1 hour of incubation and cultured with protein A that binds HRP. The binding signal was developed by addition of TMB receptor for approximately 5 minutes, quenched with 1 M H3P〇4 and read spectrophotometrically at A45. The tested hlgG specifically binds to its antigen. The pure lines bHl and 3-1 showed reciprocal reactivity with murine VEGF (mVEGF) (Fig. 19). To test whether the bispecific antibodies bH1, H3 (anti-hVEGF/Her2) and D1 (anti-hDR5/Her2) can simultaneously bind to their cognate antigens or whether the antigens compete for antibody binding, hVEGF is fixed at a concentration of 2 pg/ml and hDR5. A fixed concentration of hlgG was incubated with serial dilutions of Her2-ECD, which in turn captured hlgG on the immobilized antigen. In each case, Her2-ECD binding was found to compete with binding to other antigens (Figure 20). To accurately determine the affinity of IgG and Fab (ie, anti-hVEGF isolated from the library and 142552.doc-137-201011047 anti-hVEGF/Her2 Fab and IgG) and to study the immediate binding profile, we used BIAcoreTM-3000 (BIAcore, Uppsala, Sweden) Surface plasmon resonance (SPR) assays were performed on immobilized hVEGF, mVEGF, DR5 and Her2-ECD CM5 sensing wafers on a machine with 40 to 300 reaction units (RU) depending on the analytes studied. Immobilization was carried out as described (Chen et al., 1999). To minimize the affinity effect of the bivalent IgG analyte, in which case the lower density ligand is targeted to the sensing wafer" injection at a rate of 22 to 30 μΐ/min is approximately below the estimated KD ( The binding reaction was corrected by subtracting the RU of the reference flow cell by subtracting the RU of the reference flow cell based on a 10-fold increase from the competition ELISA experiment to an increasing concentration in the 10-fold concentration range of the estimated KD. In addition, the reaction was double referenced to correct instrument bias by subtracting the RU of the flow cytometry of the injected ligand with the sample buffer (PBS with 0.05% Tween 20). For the kinetic analysis of Fab, a 1:1 Langmuir binding model was used to calculate & 011 and A; 〇ff. When necessary (high analyte concentration), a 1:1 Langmuir binding model with mass transfer limitations was applied. A bivalent analyte binding model with or without mass transfer restriction was used for IgG analytes (BIAcore Evaluation Software 3 2). In the case of H3 hlgG, H4_N Fab and H4_DhIgG, the fit of the reaction to the kinetic binding model was unsatisfactory. Therefore, a steady state binding assay is applied in which the equilibrium response is plotted against analyte concentration. Estimate KD based on ECso. A summary of the BIAcore binding analysis can be found in Figure 21. The affinity of hVEGF-binding antibodies 3-1, 3-6 and 3-7 was found to be in the range of Nemo. The bispecific antibodies (bHl, H3, H4-N, H4-D) analyzed showed low micro-Mor to micro-Mole affinity for hVEGF. In contrast, the affinity for Her2 is in the range of 8 to 142552.doc -138.201011047 59 nM (Fab). To determine whether the anti-hVEGF conjugates bH1, H3, and Η4_Ν2 light chains bind to hVEGF, regardless of the sequence of the relevant heavy chain, the light chain is variable by cloning the light chain variable domain into the 2C4 Fab expression vector pJB0524 The domain was grafted to the anti-Her2 2C4 Fab, thereby replacing the 2C4 light chain variable domain. Fab is expressed as described above. The bHl/2C4 and H3/2C4 chimeric Fabs were not expressed in detectable amounts. The H4_N/2C4 chimeric Fab protein was isolated and tested for binding to hVEGF (bHl initial specificity) and Her2 (bHl, 2C4 initial specificity). No binding to hVEGF and Her2 was detected by standard ELISA binding assay (Figure 22). The results indicate that the heavy chain of bHl is required for antigen binding. Comparison of anti-hVEGF epitopes
為了粗略地定位出hVEGF上抗hVEGF抗體之抗原決定 基,吾人研究該等新分離之抗VEGF抗體與其他hVEGF結 合抗體競爭及VEGF受體與已知結合位點競爭之能力(Fuh 等人,2006 ; Muller 等人,1998 ; Wiesmann 等人,1997)。 以競爭性£1>18八格式進行檢定,其中以2卜§/1111於]^3乂丨3〇印 免疫培養盤上固定VEGFRl(Flt)域1-3及抗hVEGF抗體To roughly locate the epitopes of anti-hVEGF antibodies on hVEGF, we investigated the ability of these newly isolated anti-VEGF antibodies to compete with other hVEGF-binding antibodies and compete with VEGF receptors for known binding sites (Fuh et al., 2006). Muller et al., 1998; Wiesmann et al., 1997). The assay was performed in a competitive £1>18 format, in which the VEGFR1 (Flt) domain 1-3 and the anti-hVEGF antibody were immobilized on the immunoculture plate by 2 §/1111 on the ^3乂丨3〇 print.
Avastin®(IgG)、B20-4.1(IgG)、G6(Fab)及 KDR域 1-7 Fc融 合蛋白。溶液競爭結合檢定使用以經純化IgG蛋白之連續 稀釋液平衡之生物素標記VEGF,並以塗覆於Maxisorb培 養盤上之固定化Fab或IgG捕捉未結合之生物素-VEGF且以 結合抗生蛋白鏈菌素之HRP偵測(Lee等人,J. Mol. Biol. 340:1073,2004)。阻斷hVEGF與其他hVEGF結合抗體或 hVEGF受體結合之抗體可能共用重疊抗原決定基。高濃度 142552.doc -139- 201011047 (μΜ)之雙特異性hVEGF/Her2結合抗體(bHl)可實現完全阻 斷hVEGF與其受體(VEGFR1及VEGFR2)之結合,此表明 bHl抗原決定基與VEGFR1 (圈23)及VEGFR2(圈23)充分重 疊。此外,bHl阻斷hVEGF與B20-4.1結合(圖24)。H3、 H4_N&H4_D亦阻斷hVEGF與兩種受體結合,此說明其抗 原決定基與bHl類似(圈23)。不完全的阻斷概況可能為其 對於hVEGF相對較低之親和性的結果(圖21)。與此對比, 3-1即使在最高濃度(0.5 μΜ)下亦不阻斷hVEGF與VEGFR1 結合(圖23)。此外,吾人無法偵測Avastin®抗體之3-1 hlgG #11 阻斷(圖 25)。然而,3-1 hlgG 阻斷 hVEGF 與 VEGFR2(KDR) (圈23)以及Β20-4·1(圈24)之結合。該等結果指示,3-1與其 他抗體相比具有獨特之抗原決定基。 實例4. bHl、抗hVEGF/Her2雙特異性抗體之結構-功能研究Avastin® (IgG), B20-4.1 (IgG), G6 (Fab) and KDR domain 1-7 Fc fusion proteins. The solution competition binding assay uses biotin-labeled VEGF equilibrated with serial dilutions of purified IgG protein and captures unbound biotin-VEGF with immobilized Fab or IgG coated on a Maxisorb plate and binds to the anti-protein chain HRP detection of bacteriocin (Lee et al, J. Mol. Biol. 340: 1073, 2004). Antibodies that block the binding of hVEGF to other hVEGF binding antibodies or hVEGF receptors may share overlapping epitopes. High concentration of 142552.doc -139- 201011047 (μΜ) bispecific hVEGF/Her2 binding antibody (bH1) can completely block the binding of hVEGF to its receptor (VEGFR1 and VEGFR2), indicating bH1 epitope and VEGFR1 ( Circle 23) and VEGFR2 (circle 23) overlap sufficiently. In addition, bH1 blocked hVEGF binding to B20-4.1 (Fig. 24). H3, H4_N & H4_D also blocked hVEGF binding to both receptors, indicating that its antigenic determinant is similar to bHl (circle 23). An incomplete blockade profile may be the result of its relatively low affinity for hVEGF (Figure 21). In contrast, 3-1 did not block the binding of hVEGF to VEGFR1 even at the highest concentration (0.5 μΜ) (Figure 23). In addition, we were unable to detect 3-1 hlgG #11 blockade of Avastin® antibody (Figure 25). However, 3-1 hlgG blocks the binding of hVEGF to VEGFR2 (KDR) (circle 23) and Β20-4·1 (circle 24). These results indicate that 3-1 has a unique epitope compared to other antibodies. Example 4. Structure-function study of bHl, anti-hVEGF/Her2 bispecific antibodies
為解釋bHl與其兩個抗原(VEGF及HER2)相互作用之性 質’進行結構與功能研究。Herceptin®抗體及bHl之不同 之處在於 CDR-L1(V29NTA32 相對於 I29PRSISGY32; SEQ ID NO:35 及 36)及 CDR-L2(S50ASF53 相對於 W50GSY53 ; SEQ ID NO:37及38)。bHl抗VEGF/Her2基於其雙重特異性性質及 其對於VEGF及Her2相對較高之親和性而被選作典型以供 結構表徵。為研究VEGF及Her2上之功能性及結構性抗原 決定基,吾人使與VEGF1()9及!iHer2胞外域複合之bHl Fab 結晶且藉由X光結晶術解析兩種複合物之結構。此外’吾 人使用如(Vajdos等人’ 2002)所述之組合嗤菌體呈現庫進 行丙胺酸及同系物獵槍掃描分析。 142552.doc -140- 201011047 bHl Fab表現、純化、結晶及資料收集 如先前(Christinger等人,1996)所述表現、再摺疊及純 化人類VEGF之由殘基8-109組成的受體結合部分。如先前 (Franklin等人,2004 ; Hudziak 及 Ullrich,1991)所述表現 及純化Her2之胞外域的殘基1-624。Structural and functional studies were performed to explain the nature of bHl's interaction with its two antigens (VEGF and HER2). The Herceptin® antibody differs from bH1 in CDR-L1 (V29NTA32 vs. I29PRSISGY32; SEQ ID NOS: 35 and 36) and CDR-L2 (S50ASF53 vs. W50GSY53; SEQ ID NOS: 37 and 38). bHl anti-VEGF/Her2 was selected for structural characterization based on its dual specificity and its relatively high affinity for VEGF and Her2. To study the functional and structural epitopes on VEGF and Her2, we have crystallized bHl Fab complexed with the VEGF1()9 and !iHer2 extracellular domains and resolved the structure of the two complexes by X-ray crystallography. In addition, 'we used a combination of alginoside and homologous shotgun scanning analysis as described in (Vajdos et al. 2002). 142552.doc -140- 201011047 bHl Fab Expression, Purification, Crystallization, and Data Collection Receptor binding moieties consisting of residues 8-109 that are expressed, refolded, and purified as described previously (Christinger et al., 1996). Residues 1-624 of the extracellular domain of Her2 were expressed and purified as previously described (Franklin et al., 2004; Hudziak and Ullrich, 1991).
對於大規模bHl Fab製備而言’自10公升大腸桿菌醱酵 獲得全細胞小球。將220公克細胞糊狀物解凍至1 L PBS、 25 mM EDTA、1 mM PMSF中。將混合物均質化且隨後兩 胃· 次通過微流化裝置(microfluidizer)。隨後將懸浮液於1 2k下 以250 ml等分試樣離心90分鐘。隨後將蛋白質以5毫升/分 鐘之速度裝載至以PBS平衡之蛋白G管柱(25 ml)上。將管 柱以平衡緩衝液洗滌且隨後以0.58%乙酸溶離。藉由SDS • PAGE檢定溶離份(資料未顯示)。將含有bHl Fab之溶離份 合併且隨後裝載至以20 mM ME S (pH 5.5)平衡之5〇 ml陽離 子交換SP凌脂糖管柱(Pharmacia)上。將Fab以於平衡緩衝 液中之氣化鈉梯度溶離。梯度為線性至0.5 M NaCl、20 mM MES(pH 5.5)。藉由SDS-PAGE識別含有Fab之溶離份 (資料未顯示)且將其合併。以大約0.5 Μ之NaCl濃度溶離出 bHl Fab。藉由量測A28g測定Fab濃度。bHl Fab之最終產量 為67 mg/1醱酵物生長。 藉由以2:1莫耳比混合經純化之bHl Fab與VEGF或Her2 ECD而獲得複合物,且對於VEGF-Fab複合物而言於25 mM 丁1^-11(:1(?只7.5)及0.3]^氯化鈉中藉由尺寸排阻層析法 (SP-200,Pharmacia)純化且對於Her2 ECD-Fab複合物而言 142552.doc • 141 - 201011047 以25 mM Tris-HCl(pH 8)及0.15 Μ氣化鈉純化。藉由SDS PAGE檢驗所得複合物之組成(資料未顯示)。將蛋白質複合 物濃縮且用於結晶試驗中。在bHl-VEGF複合物之情況 下,於19°C下使用蒸氣擴散方法之初始懸滴實驗於1週内 自14種不同條件產生小同型晶體。於一週内在4種條件下 出現bHl-Her2複合物之晶體。在每種情況下選擇來自一種 條件之晶體用於進一步最優化。 對於bHl Fab-VEGF(8-109)之結晶而言,將等體積之蛋 白質複合物溶液(10.6 mg/ml蛋白質、300 mM NaCl、25 mMTris-HCl(pH7.5))與含有0.15MD,L-蘋果酸(pH7.0)、 20% PEG335〇之結晶緩衝液混合,且於19°C下平衡。在24 小時後出現屬於具有a= 100.6、b=l98.0、c=77.7之晶胞尺 寸的空間群C222!之大晶體。晶體形式於不對稱單元中含 有1個Fab及1個VEGF單體。在資料收集之前,藉由在於人 造母液中含有5%、10%及15%甘油的液滴之間轉移,繼而 於液氮中急驟冷凍來冷凍保護晶體。以高級光源 (Advanced Light Source)(Berkeley)之光束線 5·0·1針對 2.6 A 收集資料。 藉由將蛋白質溶液(11 mg/ml、25 mM Tris(pH 8)及150 !111^氣化鈉)與含有25°/()〜丫?£02〇。。、0.11^14£8(卩116.5)之 結晶緩衝液混合而獲得bHl Fab-Her2(l-624)之晶體。在12 小時後出現屬於具有a=62.3、b=115.1、c=208.2之晶胞尺 寸的空間群P2JP!之晶體。晶體於不對稱單元中含有一種 Her2-Fab複合物。在資料收集之前,將晶體以20%乙二醇 142552.doc -142- 201011047 作為冷凍保護劑於液氮中急驟冷凍。以高級光源 (Berkeley)之光束線5.0.1針對2.9 A收集資料。 資料處理、結構確定及改進 使用 Denzo及 Scalepack(Otwinowski,1997)處理資料。 藉由 Phaser(L. C. Storoni,2004 ; Read,2001)解析 bHl Fab複合物之結構。使用VEGF之座標自先前所述之VEGF-Fab複合物(2FJG)及含有Herceptin®抗體Fab-Her2複合物 (1N8Z)之可變域 VL/VH或恒定域Chi/Cl的Fab片段解析 mmWhole cell pellets were obtained from 10 liters of E. coli fermentation for large scale bHl Fab preparation. 220 grams of cell paste was thawed into 1 L PBS, 25 mM EDTA, 1 mM PMSF. The mixture was homogenized and then passed through a microfluidizer. The suspension was then centrifuged at 125 ml for 90 minutes in a 250 ml aliquot. The protein was then loaded onto a Protein G column (25 ml) equilibrated with PBS at a rate of 5 ml/min. The column was washed with equilibration buffer and then dissolved in 0.58% acetic acid. The fraction was determined by SDS • PAGE (data not shown). The fraction containing bH1 Fab was fractionated and then loaded onto a 5 〇 ml cation exchange SP saccharide column (Pharmacia) equilibrated at 20 mM ME S (pH 5.5). The Fab was dissolved in a gradient of sodium vapor in the equilibration buffer. The gradient was linear to 0.5 M NaCl, 20 mM MES (pH 5.5). Fractions containing Fab were identified by SDS-PAGE (data not shown) and combined. The bHl Fab was eluted at a NaCl concentration of about 0.5 Torr. The Fab concentration was determined by measuring A28g. The final yield of bHl Fab was 67 mg/1 酦 yeast growth. The complex was obtained by mixing the purified bHl Fab with VEGF or Her2 ECD at a molar ratio of 2:1, and for the VEGF-Fab complex at 25 mM D 1^-11 (:1 (? only 7.5) And 0.3] sodium chloride was purified by size exclusion chromatography (SP-200, Pharmacia) and for Her2 ECD-Fab complex 142552.doc • 141 - 201011047 with 25 mM Tris-HCl (pH 8 And 0.15 Μ gasification sodium purification. The composition of the obtained complex was examined by SDS PAGE (data not shown). The protein complex was concentrated and used in the crystallization test. In the case of bHl-VEGF complex, at 19° The initial hanging drop experiment using the vapor diffusion method under C produced small isomorphous crystals from 14 different conditions in one week. The crystals of the bHl-Her2 complex appeared in four conditions within one week. In each case, the selection was from one condition. The crystals were used for further optimization. For the crystal of bHl Fab-VEGF (8-109), an equal volume of protein complex solution (10.6 mg/ml protein, 300 mM NaCl, 25 mMTris-HCl (pH 7.5) )) mixed with crystallization buffer containing 0.15MD, L-malic acid (pH7.0), 20% PEG335(R), and equilibrated at 19 °C After 24 hours, a large crystal belonging to the space group C222! having a unit cell size of a = 100.6, b = l98.0, and c = 77.7 appears. The crystal form contains 1 Fab and 1 VEGF single in the asymmetric unit. Before the data was collected, the crystals were frozen by liquid droplets in the artificial mother liquor containing 5%, 10% and 15% glycerol, followed by rapid freezing in liquid nitrogen. Advanced Light Source (Berkeley) beam line 5·0·1 collects data for 2.6 A. By using a protein solution (11 mg/ml, 25 mM Tris (pH 8) and 150!111^ sodium) with 25°/( The crystals of bHl Fab-Her2 (l-624) were obtained by mixing crystallization buffers of 0.11^14£8 (卩116.5). After 12 hours, it appeared to have a=62.3, b =115.1, c=208.2 unit cell size space group P2JP! crystal. The crystal contains a Her2-Fab complex in the asymmetric unit. Before data collection, the crystal is 20% ethylene glycol 142552.doc -142 - 201011047 Rapid freezing in liquid nitrogen as a cryoprotectant. Data was collected for 2.9 A using the beam source 5.0.1 of the Advanced Light Source (Berkeley). Data processing, structure determination and improvement Data were processed using Denzo and Scalepack (Otwinowski, 1997). The structure of the bHl Fab complex was analyzed by Phaser (L. C. Storoni, 2004; Read, 2001). Resolution of VEGF from the previously described VEGF-Fab complex (2FJG) and Fab fragment containing the variable domain VL/VH or constant domain Chi/Cl of the Herceptin® antibody Fab-Her2 complex (1N8Z)
bHl-Fab-VEGF(8-109)複合物。當解析 bHl-Her2結構時, 使用Her2之片段及來自Her2-Fab複合物1N8Z之Herceptin® 抗體Fab的可變域作為搜尋模型。使用Herceptin®抗體Fab 恆定部分作為搜尋模型(1N8Z)不能發現bHl Fab之恆定 域,且必須藉由Herceptin®抗體Fab-Her2複合物結構引導 來手動對接。分別使用程式 Refmac(Collaborative Computational Project,1994)及 Coot(Emsley及 Cowtan,2004)進行模型建立 及改進。使用 MolProbity(Lovell 等人,Proteins 50:437 (2003))分析立體化學參數。對於Fab-VEGF複合物而言將 結構改進為IU=0.22及R* *=0.27,且對於Fab-Her2複合物 而言將結構改進為R值=0.25及R® * =0.31。對與VEGF以及 Her2-ECD複合之bHl Fab的晶體結構建模。某些bHl Fab殘 基在抗原之4.5、4.0及3·5 A以内。相同抗體上兩個抗原之 兩個互補位(抗體上與抗原產生接觸之區域)明顯重疊且來 自輕鏈及重鏈兩者之殘基涉及與兩抗原之結合。bHl結合 VEGF上與Avastin®抗體類似之抗原決定基,且bHl結合與 142552.doc •143- 201011047bHl-Fab-VEGF (8-109) complex. When the bHl-Her2 structure was analyzed, the fragment of Her2 and the variable domain of the Herceptin® antibody Fab from the Her2-Fab complex 1N8Z were used as a search model. The constant region of the bHl Fab could not be found using the Herceptin® antibody Fab constant portion as a search model (1N8Z) and must be manually docked by the Herceptin® antibody Fab-Her2 complex structure. Model creation and improvement were performed using the programs Refmac (Collaborative Computational Project, 1994) and Coot (Emsley and Cowtan, 2004). Stereochemical parameters were analyzed using MolProbity (Lovell et al., Proteins 50: 437 (2003)). The structure was modified for the Fab-VEGF complex to IU = 0.22 and R* * = 0.27, and the structure was modified for the Fab-Her2 complex to have an R value = 0.25 and R® * = 0.31. The crystal structure of bHl Fab complexed with VEGF and Her2-ECD was modeled. Some bHl Fab residues are within 4.5, 4.0 and 3.5 A of the antigen. The two paratopes of the two antigens on the same antibody (the region of the antibody that is in contact with the antigen) overlap significantly and the residues from both the light and heavy chains are involved in binding to the two antigens. bHl binds to an epitope on VEGF that is similar to the Avastin® antibody, and bHl binds to 142552.doc •143- 201011047
Herceptin®抗體基本相同之抗原決定基上的Her2。 分別以2.9 A及2.6 A之解析度測定與HER2胞外域 (ECD)(殘基1-624)及VEGF受體結合域(殘基8-109)結合之 bHl Fab的晶體結構(圖26及表3)。圖26顯示與Herceptin® 抗體/HER2複合物疊加之bHl Fab/HER2晶體結構及bHl Fab/VEGF複合物之晶體結構。 表3.結晶學研究 bffl Fab/hVEGF 複合物 bHl Fab/HER2-ECD 複合物 資料收集統計 空間群 C222, P2!2i2i 單位晶胞(A) a=100.6, b=198.0, c=77.7 a=62.3, b=115.1, c=208.2 光束線,波長 ALS 5.0.1 ALS 5.0.1 解析度(人) 50.0-2.6 50.0-2.9 Rsyma 0.090 (0.66) 0.095 (0.66) 觀察數目 151680 192951 獨特反射 24705 34149 完整性(%)* 99.8 (100) 100(100) 1/σ(1)* 16.0(3.0) 18.5 (2.6) 改進統計 不對稱單元之内容物 1/2 VEGF 二聚體,1 Fab 1 Her2-ECD 單體,1 Fab 解析度(人) 30.0-2.6 30.0-2.9 所用反射 22977 32277 R因子b,R自由 0.19,0.25 0.22, 0.28 RMS偏差鍵(人) 0.011 0.010 RMS偏差角(°) 1.3 1.3 Ramachandran 統計 有利區(%) 96.5% 89.9% 允許區(%) 99.4% 97.9% 離群值(%) 0.6% 2.1% 殘基數目 528 1017 水之數目 49 0 糖之數目 0 2 配位體/離子數目 1(甘油) 1 (MES)Herceptin® antibodies are essentially identical to Her2 on the epitope. The crystal structure of bHl Fab bound to HER2 extracellular domain (ECD) (residue 1-624) and VEGF receptor binding domain (residue 8-109) was determined by resolution of 2.9 A and 2.6 A, respectively (Fig. 26 and Table) 3). Figure 26 shows the crystal structure of the bHl Fab/HER2 crystal structure and the bHl Fab/VEGF complex superimposed with the Herceptin® antibody/HER2 complex. Table 3. Crystallographic studies bffl Fab/hVEGF complex bHl Fab/HER2-ECD complex data collection statistical space group C222, P2! 2i2i unit cell (A) a=100.6, b=198.0, c=77.7 a=62.3 , b=115.1, c=208.2 Beamline, wavelength ALS 5.0.1 ALS 5.0.1 Resolution (person) 50.0-2.6 50.0-2.9 Rsyma 0.090 (0.66) 0.095 (0.66) Number of observations 151680 192951 Unique reflection 24705 34149 Integrity (%)* 99.8 (100) 100(100) 1/σ(1)* 16.0(3.0) 18.5 (2.6) Improving the content of the statistical asymmetric unit 1/2 VEGF dimer, 1 Fab 1 Her2-ECD single Body, 1 Fab resolution (human) 30.0-2.6 30.0-2.9 Reflection 22977 32277 R factor b, R free 0.19, 0.25 0.22, 0.28 RMS deviation bond (person) 0.011 0.010 RMS deviation angle (°) 1.3 1.3 Ramachandran statistically favorable Zone (%) 96.5% 89.9% Allowable zone (%) 99.4% 97.9% Outliers (%) 0.6% 2.1% Number of residues 528 1017 Number of water 49 0 Number of sugars 0 2 Number of ligands/ions 1 Glycerin) 1 (MES)
Rsyma=EI-<I> ΣΙ.<Ι>為獨特反射之對稱相關觀測結果的平均強度。 R® Jb= Σ F°-Fc ΣΙ F0。R自由係根據除自所有改進排除之5%反射以外之 *括弧中之值指示最高解析度外殼之值。 142552.doc -144- 201011047 在bHl/HER2複合物中,Fab以類似於Herceptin®抗體之 方式結合至HER2之域IV(Cho等人,Nature 421:756, 2003);該兩種複合物以2.3 A之Ca位置的均方根偏差 (r.m.s.d.)疊加。在VEGF複合物中,bHl識別與VEGF受體 (VEGFR1及VEGFR2)之結合位點及其他VEGF抗體之結合 位點重疊的抗原決定基(Wiesmann等人,Cell 91:695, 1997 ; Muller等人,Proc. Natl. Acad. Sci. USA 94:7192, 1997)。與此相一致的是,觀察到bHl阻斷VEGF與其受體 結合(圖27)。對於圖27中所示之資料而言,以漸增濃度之 IgG(x軸)平衡經生物素標記之人類VEGF165。於固定化 VEGFR2-ECD Fc融合蛋白上捕捉未結合之hVEGF165且以 分光光度法偵測(於450 nm下之光密度,y轴)。Rsyma=EI-<I>ΣΙ.<Ι> is the average intensity of symmetrically related observations of unique reflections. R® Jb= Σ F°-Fc ΣΙ F0. The R-free system indicates the value of the highest resolution shell based on values in brackets other than the 5% reflection excluded from all improvements. 142552.doc -144- 201011047 In the bHl/HER2 complex, the Fab binds to the domain of HER2 in a manner similar to the Herceptin® antibody (Cho et al., Nature 421:756, 2003); the two complexes are 2.3 The root mean square deviation (rmsd) of the Ca position of A is superimposed. In VEGF complexes, bH1 recognizes epitopes that overlap with the binding sites of VEGF receptors (VEGFR1 and VEGFR2) and other VEGF antibody binding sites (Wiesmann et al, Cell 91:695, 1997; Muller et al, Proc. Natl. Acad. Sci. USA 94:7192, 1997). Consistent with this, it was observed that bH1 blocks the binding of VEGF to its receptor (Fig. 27). For the data shown in Figure 27, biotinylated human VEGF165 was equilibrated with increasing concentrations of IgG (x-axis). Unbound hVEGF165 was captured on the immobilized VEGFR2-ECD Fc fusion protein and detected spectrophotometrically (optical density at 450 nm, y-axis).
如圖28中所示,bHl上VEGF及HER2之結合位點廣泛重 疊。十四個咬合HER2之殘基中之十二個亦接觸VEGF。兩 個結合位點包括來自HC以及LC之CDR殘基。在HER2複合 物中,LC及HC CDR供應大致相等之抗原接觸區域(分別為 53%及47%),而在VEGF複合物中,LC CDR構成接近70% 之包埋表面(圖29)。Herceptin®抗體及bHl上之HER2結合 位點類似,且不同之處僅為CDR-L1及-L2區,其中在bHl 中Herceptin®抗體序列不保守(圖28)。在圖28中’根據由 VEGF或HER2包埋之程度遮蔽bHl或Herceptin®抗體Fab表 面上之殘基(深色陰影及白色文字>75%包埋,中度陰影及 白色文字50-75%包埋,淺色陰影及黑色文字25-49%包 埋)。加下劃線之殘基在bHl與Herceptin®抗體之間有所不 142552.doc •145· 201011047 同。白色虛線展示輕鏈與重鏈之分隔。 與HER2複合之bHl Fab的構形明顯類似於結合¥£(}17之 卩汪1»的構形(1".111.8.(1. = 0.7人,€(1)。兩種13111?&13結構之(^尺彼 此良好疊加,且與母體Herceptin®抗體ρν及bH1As shown in Figure 28, the binding sites of VEGF and HER2 on bH1 were broadly overlapped. Twelve of the four residues that bite HER2 also contact VEGF. The two binding sites include CDR residues from HC and LC. In the HER2 complex, the LC and HC CDRs provided approximately equal antigen contact regions (53% and 47%, respectively), whereas in the VEGF complex, the LC CDRs constituted nearly 70% of the embedded surface (Figure 29). The Herceptin® antibody and the HER2 binding site on bHl are similar, and differ only in the CDR-L1 and -L2 regions, where the Herceptin® antibody sequence is not conserved in bH1 (Figure 28). In Figure 28, 'blocking the residue on the surface of bHl or Herceptin® antibody Fab according to the degree of embedding by VEGF or HER2 (dark shade and white text > 75% embedding, moderate shading and white text 50-75%) Embedded, light shades and black text 25-49% embedded). The underlined residues are not between bHl and Herceptin® antibodies. 142552.doc •145· 201011047 The same. The white dashed line shows the separation of the light chain from the heavy chain. The configuration of the bHl Fab complexed with HER2 is clearly similar to the configuration of the combination of ¥£(}17卩王1»(1".111.8.(1. = 0.7 person, €(1). Two 13111?& 13 structures (^ feet are well superimposed on each other, and with the parent Herceptin® antibody ρν and bH1
Fv(HER2)r.m.s.d.=0.6A 、 Herceptin® 抗體 ρν 及 bHlFv(HER2)r.m.s.d.=0.6A, Herceptin® antibody ρν and bHl
Fv(VEGF)r_m.s_d. = 1.2A 良好疊加。CDR-L1 為一例外且兩 種複合物結構顯著不同;偏差為4.6 A(殘基27-32之Ca)。 圈30顯示與VEGF結合之bHl Fab的CDR構形與結合hER2 之bHl及Herceptin®抗體明顯類似,例外之處為CDR-L1。 圈30為作為結合VEGF之bHl(深色陰影)、結合hER2之 bHl(白色)及結合HER2之Herceptin®抗體(淺色陰影)之管 的CDR環之疊加。CDR-L1環展現兩種bHl結構之顯著不同 的構形(對於bHl殘基27-32而言,r.m.s.d.Ca=4.6)(圖31)。 在HER2複合物中,CDR-L1最小程度地涉及於抗原相互作 用中且環之一部分(殘基28-30b)顯現具可撓性。對於VEGF 結合而言,整個環係充分結構化的且佔由VEGF包埋之表 面積的26%。 CDR-L1中之兩個殘基(Ile30c及Tyr32)具有不同構形且在 bHl與HER2或VEGF之結合中具有不同作用。在HER2複合 物中,Ile30c之側鏈包埋於由CDR-L1及CDR-L3殘基形成 之疏水性核心中。在VEGF複合物中,該側鍵與VEGF形成 疏水性接觸。Tyr32之Ca在兩種結構中位於相同位置,但 其側鏈旋轉了約130度。在HER2複合物中,Tyr32與受體 疊靠,而在VEGF複合物中,側鏈與Ile29—起形成疏水性 142552.doc •146· 201011047 核心且支撐CDR-L1及CDR-L3之構形。CDR-L1構形藉由 Tyr32與LC構架殘基Gly72之間的氫鍵而進一步穩定化。結 構分析證實Tyr32對於VEGF結合而言係重要的,此係因為 不允許突變為丙胺酸或苯丙胺酸。與VEGF結合相反, Tyr32突變為丙胺酸(恢復為Herceptin®抗體殘基)對於 HER2結合而言為較佳的。兩種複合物之疊加表明VEGF在 其HER2結合態時將會與CDR-L1之Tyr32碰撞(clash)(圖 31)。在圖 31 中,殘基Tyr32、Ile30c、Ile29及Gly72之側鏈 顯示為棒狀。具有高於平均值之溫度因數的殘基係以較深 陰影顯示(殘基28-3 013)。丁丫132與〇1772之間的氫鍵鍵結係 以虚線來顯示。 • 以上結果指示,重排CDR-L1之能力對於bHl之雙特異性Fv(VEGF)r_m.s_d. = 1.2A Good stacking. The CDR-L1 is an exception and the two complex structures are significantly different; the deviation is 4.6 A (residue 27-32 Ca). Loop 30 shows that the CDR conformation of the bHl Fab that binds to VEGF is significantly similar to the bHl and Herceptin® antibodies that bind to hER2, with the exception of CDR-L1. Loop 30 is a superposition of CDR loops as a tube that binds bHl (dark shade) of VEGF, bHl (white) that binds hER2, and a Herceptin® antibody (light shade) that binds to HER2. The CDR-L1 loop exhibited a significantly different configuration of the two bHl structures (r.m.s.d. Ca = 4.6 for bHl residues 27-32) (Figure 31). In the HER2 complex, CDR-L1 is minimally involved in antigen interaction and one part of the loop (residues 28-30b) appears to be flexible. For VEGF binding, the entire loop system is sufficiently structured and accounts for 26% of the surface area embedded by VEGF. The two residues in CDR-L1 (Ile30c and Tyr32) have different configurations and have different roles in the binding of bH1 to HER2 or VEGF. In the HER2 complex, the side chain of Ile30c is embedded in a hydrophobic core formed by CDR-L1 and CDR-L3 residues. In the VEGF complex, the side bond forms a hydrophobic contact with VEGF. The Ca of Tyr32 is in the same position in both structures, but its side chain is rotated by about 130 degrees. In the HER2 complex, Tyr32 overlaps with the receptor, whereas in the VEGF complex, the side chain forms a hydrophobicity with Ile29 142552.doc • 146·201011047 core and supports the configuration of CDR-L1 and CDR-L3. The CDR-L1 configuration is further stabilized by hydrogen bonding between Tyr32 and the LC framework residue Gly72. Structural analysis confirmed that Tyr32 is important for VEGF binding because it is not allowed to mutate to alanine or phenylalanine. In contrast to VEGF binding, Tyr32 mutation to alanine (return to Herceptin® antibody residues) is preferred for HER2 binding. The superposition of the two complexes indicates that VEGF will clash with Tyr32 of CDR-L1 in its HER2 binding state (Fig. 31). In Fig. 31, the side chains of the residues Tyr32, Ile30c, Ile29 and Gly72 are shown as rods. Residues with a temperature factor above the mean are shown in darker shades (residues 28-3 013). The hydrogen bonding between Dings 132 and 〇 1772 is shown by a broken line. • The above results indicate that the ability to rearrange CDR-L1 is bispecific for bHl
而言係必需的。已顯示CDR-L1之類似構形靈活性在天然 抗體之抗原識別中具有作用(Jimenez等人,Proc. Natl. Acad. Sci. USA 100:92,2003 ; Mylvaganam等人,J. Mol. Biol. 281:301,1998)。圖 26、28、30、31 及 32 係使用 PYMOL(DeLano Scientfic,San Carlos, CA)由晶體結構座標 而產生(PDB碼,3BDY、3BE1、1N8Z)。 bHl獵搶掃描 為研究bHIFab之抗原結合位點,使用噬菌體呈現Fab庫 進行獵搶掃描組合突變誘發(Vajdos等人,J. Mol. Biol. 320:415,2002 ; Weiss等人,Proc· Natl. Acad. Sci. USA 97:8950,2000)。針對抗原(hVEGF 及 Her2-ECD)作結合選 擇以分離功能性純系,繼而進行dna定序使得可計算每一 142552.doc -147- 201011047 變化位置處之野生型/突變型比率(Vajdos等人,2002)。隨 後使用該等比率來確定每一經掃描側鏈對VEGF及Her2結 合之貢獻。該等結果使得可定位用於結合VEGF及Her2之 功能性互補位。 bHl獵搶庫設計 使用噬菌體呈現庫掃描CDR中經溶劑暴露之殘基,其中 可允許野生型殘基變為丙胺酸或野生型(丙胺酸掃描)或變 為同系物殘基或野生型(同系物掃描)。遺傳密碼之性質需 要在文庫中除Wt/丙胺酸或Wt/同系物殘基以外包括一些其 他取代(圖33)。建構獨立之重鏈及輕鏈丙胺酸及同系物掃 描文庫。該等文庫顯示於圖34中。簡併係在1.3 xlO5至 1.3 χΙΟ8之範圍内且實際文庫尺寸係在6χ109至4x101G之範 圍内。 建構獵搶掃描庫 如上所述,為使得可於Ml 3噬菌體表面上呈現bHl Fab,使用標準分子生物學技術修飾先前所述之經設計於 與Ml 3基因-3次要外鞘蛋白之C-末端域融合之噬菌體上呈 現hu4D5Fab的質體AP2009以編碼bHIFab。輕鏈之C-末端 含有抗原決定基(gD)標籤。使用bHl Fab之「終止模板」 變型作為文庫模板(Sidhu等人,2004)。輕鏈丙胺酸及同系 物掃描庫於CDR-L1、CDR-L2及CDR-L3中具有終止密碼 子,且重鏈丙胺酸及同系物庫於每一重鏈CDR中含有終止 密碼子。藉由先前所述之方法(Sidhu等人,2004)使用 Kunkel突變誘發(Kunkel等人,1 987)於各自之終止模板上 142552.doc -148- 201011047 建構文庫。 文庫選擇 向NUNC 96孔Maxisorp免疫培養盤塗覆5 pg/ml捕捉標靶 (hVEGF109、Her2-ECD 或抗 gD mlgG)且以於 PBS 中之 1% BSA(w/v)阻斷。如(Lee等人,2004a)所述以K07輔助噬菌 體(NEB)繁殖上述文庫之噬菌體。將文庫噬菌體溶液以每 毫升1013個噬菌體粒子之濃度添加至經塗覆之培養盤且於It is necessary. Similar conformational flexibility of CDR-L1 has been shown to play a role in antigen recognition by natural antibodies (Jimenez et al, Proc. Natl. Acad. Sci. USA 100: 92, 2003; Mylvaganam et al, J. Mol. Biol. 281:301, 1998). Figures 26, 28, 30, 31 and 32 are generated from crystal structure coordinates using PYMOL (DeLano Scientfic, San Carlos, CA) (PDB code, 3BDY, 3BE1, 1N8Z). The bHl hunting scan was performed to study the antigen binding site of bHIFab, and the phage was used to present the Fab library for hunting and scanning combined mutation induction (Vajdos et al., J. Mol. Biol. 320: 415, 2002; Weiss et al., Proc. Natl. Acad. Sci. USA 97:8950, 2000). Binding selection of antigens (hVEGF and Her2-ECD) to isolate functional lines, followed by dna sequencing allows calculation of the wild-type/mutant ratio at each 142552.doc-147-201011047 change position (Vajdos et al, 2002). These ratios are then used to determine the contribution of each scanned side chain to VEGF and Her2 binding. These results allow for the mapping of functional complements for binding to VEGF and Her2. The bHl hunting library design uses a phage display library to scan for solvent exposed residues in the CDRs, which allow wild type residues to be changed to alanine or wild type (alanine scan) or to homologue residues or wild type (same line) Scan). The nature of the genetic code requires some substitution in the library in addition to Wt/alanine or Wt/homologous residues (Figure 33). Independent heavy and light chain alanine and homolog scanning libraries were constructed. These libraries are shown in Figure 34. The degeneracy ranged from 1.3 xlO5 to 1.3 χΙΟ8 and the actual library size ranged from 6χ109 to 4x101G. Constructing a Hunting Scanning Library As described above, in order to render the bHl Fab on the surface of the Ml 3 phage, the previously described C-designed with the Ml 3 gene-3 minor outer sheath protein was modified using standard molecular biology techniques. The plastid AP2009 of hu4D5 Fab was presented on the phage fused to the terminal domain to encode bHIFab. The C-terminus of the light chain contains an epitope (gD) tag. The "Termination Template" variant of bHl Fab was used as a library template (Sidhu et al., 2004). The light chain alanine and homolog scanning libraries have a stop codon in CDR-L1, CDR-L2 and CDR-L3, and the heavy chain alanine and homologue libraries contain a stop codon in each heavy chain CDR. The library was constructed by the method described previously (Sidhu et al., 2004) using Kunkel mutation induction (Kunkel et al., 1 987) on the respective termination template 142552.doc -148- 201011047. Library Selection A 5 pg/ml capture target (hVEGF109, Her2-ECD or anti-gD mlgG) was applied to a NUNC 96-well Maxisorp immunoculture dish and blocked with 1% BSA (w/v) in PBS. The phage of the above library was propagated with K07 helper phage (NEB) as described (Lee et al., 2004a). The library phage solution is added to the coated plate at a concentration of 1013 phage particles per ml and
室溫下培育1至2小時。將培養盤以PBST洗滌8次且繼而以 0.1 M HC1溶離所結合之噬菌體歷時30分鐘。如前所述測 定每一輪選擇之後的富集。在2輪標靶選擇之後,對於所 有文庫均觀測到50至1000倍之富集,而除在hVEGF上揀選 之LC-Ala及LC-Hom以外,後兩者顯示5至10倍之富集。如 (Sidhu等人,2004)所述選擇每一文庫中展現50至1000倍富 集之大量隨機純系用於定序。以噬菌體ELISA(Sidhu等 人,2000)就hVEGF結合而言篩檢庫LC-Ala。選擇展現超 出經BSA塗覆之對照培養盤上之信號至少兩倍的hVEGF ELISA信號之純系用於定序。使LC-Hom庫針對hVEGF經 受另外1輪選擇,繼而進行噬菌體ELISA篩檢及VEGF結合 純系之定序。 DNA序列分析 將來自不同標靶選擇之每一文庫的高品質序列轉譯且加 以比對(資料未顯示)。每一文庫中經受分析之序列數目概 括於下文表4中。 142552.doc -149- 201011047 表4·所分析之序列數目 文庫 總序列數 LCA-V2b 51 LCH-V3 79 LCA-H2 97 LCH-H2 50 LCA-gD 112 LCH-gD 120 LCA-pL 60 LCH-pL 65 HCA-V2 100 HCH-V2 96 HCA-H2 81 HCH-H2 96 HCA-gD 105 HCH-gD 105 HCA-pl 102 HCH-pl 99 計算每一變化位置處之野生型/突變型比率(圖35及圖 36),因此可允許計算出所列之F野生型/突變塑值(圖35及圖 36),其係藉由如(Vajdos等人,2002)所述將來自標靶選擇 之比率除以來自呈現選擇之比率而經校正以用於呈現。 大於1之生s/突值指示在此位置處Wt較佳,且小於1之Incubate for 1 to 2 hours at room temperature. The plates were washed 8 times with PBST and then the bound phages were lysed with 0.1 M HCl for 30 minutes. The enrichment after each round of selection is determined as previously described. After 2 rounds of target selection, 50 to 1000-fold enrichment was observed for all libraries, and the latter two showed 5 to 10 fold enrichment except for LC-Ala and LC-Hom picked on hVEGF. A large number of random pure lines exhibiting 50 to 1000 fold enrichment in each library were selected for sequencing as described (Sidhu et al., 2004). The library LC-Ala was screened for hVEGF binding by phage ELISA (Sidhu et al., 2000). A pure line that exhibits at least twice the hVEGF ELISA signal over the BSA coated control plate is selected for sequencing. The LC-Hom library was subjected to another round of selection for hVEGF, followed by phage ELISA screening and VEGF binding to the pure line sequence. DNA Sequence Analysis High quality sequences from each of the different target selections were translated and aligned (data not shown). The number of sequences subjected to analysis in each library is summarized in Table 4 below. 142552.doc -149- 201011047 Table 4. Number of Sequences Analyzed Library Total Sequence Number LCA-V2b 51 LCH-V3 79 LCA-H2 97 LCH-H2 50 LCA-gD 112 LCH-gD 120 LCA-pL 60 LCH-pL 65 HCA-V2 100 HCH-V2 96 HCA-H2 81 HCH-H2 96 HCA-gD 105 HCH-gD 105 HCA-pl 102 HCH-pl 99 Calculate the wild-type/mutant ratio at each change position (Figure 35 and Figure 36), thus allowing calculation of the listed F wild type/mutant plastic values (Figures 35 and 36) by dividing the ratio from target selection as described by (Vajdos et al., 2002) The ratio from the presentation selection is corrected for presentation. A s/burma greater than 1 indicates that Wt is better at this position and is less than 1
F野生型/突變型H tit $ 〇 F野生型/突變型>5H 中之重要作用。每一經掃描CDR殘基之重要性展示於圖 37A_37D中。結果表明,來自重鏈及輕鏈兩者之殘基積極 地有助於兩種抗原(Her2及hVEGF)結合之結合。將bHl輕 鏈及重鏈殘基對Her2結合之影響與其母體抗體hu4D5之影 響相比較(Kelley及O'Connel卜 1993)(圖 38)。 圖39A及圖39B顯示就與VEGF及HER2結合而言對bHl Fab之獵槍丙胺酸掃描及同系物掃描結果。丙胺酸突變 (ml)或額外突變(m2、m3 ;由於獵搶-丙胺酸密碼子之限 142552.doc -150- 201011047 制)或同源胺基酸突變(m4)之效應係以野生型與突變體 (wt/mut)在結合至人類VEGF(圖39A)或HER2(圖39B)之純 系中的出現比率來計算。在僅出現野生型殘基之情況下, 比率係顯示為大於「>」野生型計數。胺基酸取代(ml-m4) 之識別碼係顯示為F值上之上標。當野生型殘基為丙胺酸 時,其經甘胺酸取代(ml)。「*」指示在VEGF或HER2複合 物形成後bHl殘基被包埋的程度(*25-49%之可及面積被包 埋,**50-75%之可及面積被包埋,***大於或等於75%之 _可及面積被包埋)。The important role of F wild type/mutant H tit $ 〇 F wild type/mutant type>5H. The importance of each scanned CDR residue is shown in Figures 37A-37D. The results indicate that residues from both the heavy and light chains actively contribute to the binding of the two antigens (Her2 and hVEGF). The effect of bHl light and heavy chain residues on Her2 binding was compared to the effect of the parent antibody hu4D5 (Kelley and O'Connel 1993) (Fig. 38). Figure 39A and Figure 39B show shotgun alanine scan and homolog scan results for bHl Fab for binding to VEGF and HER2. Alanine mutation (ml) or additional mutations (m2, m3; due to hunting - alanine codon limit 142552.doc -150-201011047) or homologous amino acid mutation (m4) effect in wild type and The mutant (wt/mut) was calculated as the ratio of occurrence in the pure line of human VEGF (Fig. 39A) or HER2 (Fig. 39B). In the case where only wild type residues are present, the ratio is shown to be greater than the ">" wild type count. The identification code for the amino acid substitution (ml-m4) is shown as above the F value. When the wild type residue is alanine, it is substituted with glycine (ml). "*" indicates the degree to which the bH1 residue is embedded after the formation of the VEGF or HER2 complex (*25-49% of the accessible area is embedded, and **50-75% of the accessible area is embedded,** * Greater than or equal to 75% of the _ accessible area is buried).
顯著有助於能量相互作用之殘基組成功能性互補位,其 構成結構結合位點之子集。與抗原接觸位點之間的廣泛重 疊相反,該兩個功能性互補位顯示有限重疊(圖32及40)。 詳言之,基於獵槍掃描突變誘發,對於VEGF(圖40A)或 HER2(圓40B)結合而言針對丙胺酸(黑條)或同源胺基酸(白 條)之各突變對值(y轴,kcal/mol)作圖。「t」表示下 限,因此在此位置處未觀測到突變。「*」指示在VEGF或 HER2複合物形成後bHl殘基表面積被包埋的程度(*25-49% 包埋,**50-75%,***>75%)。VEGF結合相互作用係以 CDR-L1之Tyr32及CDR-L3之His91作為核心熱點主要由LC CDR來介導>1.5 kcal/mol)。HER2結合主要由HC CDR供應。圖32顯示bHl及Herceptin®抗體殘基基於其功 能重要性而以陰影顯示於Fab表面上時之晶體結構(對於丙 胺酸突變而言,深色陰影及白色文字,A^Gkl .5 kcal/mol ; 中度陰影及黑色文字,1“AG<1.5 kcal/mol ;淺色陰影及 142552.doc •151- 201011047 黑色文字,0.5SAAG<1 kcal/mol)。如圖28中’黑色虛線勾 勒出接觸區域之輪廓。白色虛線展示輕鏈與重鏈之分隔。 對於VEGF結合及HER2結合而言’功能性互補位殘基分 布在HC與LC之間,此表示兩條鏈之協同性。CDR-H3之 Trp95為該兩種相互作用之唯一共同的熱點殘基 (AAGwt/aia>1.5 kcal/mol)。如上所述’ VEGF結合相互作用 主要係由LC CDR介導’而HER2結合係由HC CDR所支 配。與Herceptin®抗體相比’具有較弱HER2結合親和性 (300倍)之bHl保持與HER2結合相同之核心熱點殘基 (Arg5 0、Trp95及TyrlOOa),而周邊殘基之重要性得以重新 分配(圈32)。總之’重鏈中供應hu4D5/Her2結合之大部分 重要側鏈對於bHl/Her2結合仍為重要的(ΔΔ〇>1.5 kcal/mol)。該等為一些改變。輕鏈殘基在供應中具有更多 改組-一些殘基變得較不重要且一些變得更為重要。總 之,功能性位點為bHl-VEGF及bHl-Her2複合物之晶體結 構的結構界面之一部分。 簡而言之,藉由使能量相互作用中之獨特的一組bHl殘 基與每一抗原咬合來表徵bHl與兩個結構上無關的大蛋白 質之相互作用。儘管兩種不同抗原之兩個廣泛重疊結合位 點之大部分展現單一構形,但一個CDR環(L1)之可撓性有 利於容納HER2及VEGF兩者。其機制使人聯想到在結合無 關小半抗原或肽之多重特異性抗體中觀測到之分子多樣 性。先前研究描述由小配位體在單一抗體構形之空間獨特 區之差分定位(Sethi等人,Immunity 24:429,2006)或由抗 142552.doc -152- 201011047 原結合位點之多重預存在構形(James等人,Science 299:1362,2003)所介導的多重特異性。藉由有限LC突變可 如何產生結合兩種無關蛋白抗原之抗體的方式進一步突顯 出抗體分子在抗原識別中之多樣性。 bHl親和性成熟Residues that significantly contribute to energy interaction constitute a functional paratope that constitutes a subset of structural binding sites. In contrast to the extensive overlap between antigen contact sites, the two functional complementary bits show limited overlap (Figures 32 and 40). In particular, based on shotgun scanning mutations, for VEGF (Fig. 40A) or HER2 (circle 40B) binding, for each mutation pair value of alanine (black bars) or homologous amino acids (white bars) (y-axis, Kcal/mol) mapping. "t" indicates the lower limit, so no mutation was observed at this position. "*" indicates the extent to which the bHl residue surface area is embedded after formation of the VEGF or HER2 complex (*25-49% embedding, **50-75%, ***> 75%). The VEGF binding interaction is dominated by LC CDRs with the CDR-L1 Tyr32 and CDR-L3 His91 as the core hotspots > 1.5 kcal/mol). The HER2 binding is primarily supplied by the HC CDR. Figure 32 shows the crystal structure of bHl and Herceptin® antibody residues based on their functional importance when shaded on the Fab surface (for alanine mutations, dark shades and white text, A^Gkl .5 kcal/mol Moderately shaded and black text, 1"AG<1.5 kcal/mol; light shades and 142552.doc •151- 201011047 black text, 0.5SAAG<1 kcal/mol). As shown in Figure 28, the black dotted line outlines the contact. The outline of the region. The white dotted line shows the separation of the light chain from the heavy chain. For VEGF binding and HER2 binding, the 'functional paratope residue is distributed between HC and LC, which indicates the synergy between the two strands. CDR-H3 Trp95 is the only common hotspot residue of the two interactions (AAGwt/aia > 1.5 kcal/mol). As mentioned above, the 'VEGF binding interaction is mainly mediated by LC CDRs' and the HER2 binding line is composed of HC CDRs. Dominant. Compared to the Herceptin® antibody, bHl with weaker HER2 binding affinity (300-fold) retains the same core hotspot residues (Arg50, Trp95 and TyrlOOa) as HER2, while the importance of the surrounding residues is re-established. Distribution (circle 32). In short, in the heavy chain Most of the important side chains that bind hu4D5/Her2 are still important for bHl/Her2 binding (ΔΔ〇> 1.5 kcal/mol). These are some changes. Light chain residues have more reorganizations in supply - some Residues become less important and some become more important. In summary, the functional sites are part of the structural interface of the crystal structure of the bHl-VEGF and bHl-Her2 complexes. In short, by making the energy mutual A unique set of bHl residues in action interact with each antigen to characterize the interaction of bHl with two structurally unrelated large proteins, although most of the two widely overlapping binding sites of the two different antigens exhibit a single conformation However, the flexibility of one CDR loop (L1) facilitates the accommodation of both HER2 and VEGF. The mechanism is reminiscent of the molecular diversity observed in multiplex-specific antibodies that bind to unrelated small haptens or peptides. Describe the differential localization of small ligands in a spatially distinct region of a single antibody conformation (Sethi et al., Immunity 24: 429, 2006) or multiple pre-presence configurations of the original binding site by anti-142552.doc-152-201011047 (James et al. , Science 299: 1362, 2003) The multiplex specificity mediated by how limited LC mutations can produce antibodies that bind to two unrelated protein antigens further highlights the diversity of antibody molecules in antigen recognition. bHl affinity mature
為了研究在結構及功能結果成為可用之前是否可藉由最 優化輕鏈序列來增加bHl之VEGF結合親和性,建構一文 庫,其中使基於h4D542 Fab(假定其極類似bHl Fab)之晶體 結構(Eigenbrot等人,2001)位於溶劑高度可及位置處之 CDR殘基多樣化。允許所靶向殘基變為野生型或少數同源 殘基(圖34)。如「建構獵搶掃描庫」部分中所述建構文 庫。如所述,使用基於溶液之選擇方法來選擇較高親和性 之VEGF-結合物。進行兩輪基於溶液之選擇。在每輪選擇 中藉由使經生物素標記之VEGF的濃度自第一輪中之50 nM 減少至第二輪中之20 nM來增加嚴格性。對來自最後一輪 選擇之138個純系進行定序。發現大部分純系係獨特的。 使用利用固定化VEGF(8-109)、抗gD抗體及Her2-ECD之高 產量ELISA檢定來識別與VEGF、Her2-ECD及抗gD mlgG 結合但不與BSA結合之純系。以抗gD ELISA信號校正 VEGF-ELIS A結合信號以估算VEGF結合純系之相對親和 性。選擇具有高VEGF/抗gD比率之純系用於進一步表徵° 如前所述,如同噬菌體呈現之Fab,藉由競爭ELISA估算 所選純系對VEGF及Her2之親和性。與母體bHl純系相比’ bHl變異體顯示改良之VEGF結合親和性。有趣的是’即使 142552.doc -153- 201011047 不對Her2進行基於親和性之選擇,某些純系對於Her2結合 仍具有略微改良之IC5〇值。此表明有可能就VEGF結合而言 在不顯著影響Her2結合能力之情況下使bHl純系親和性成 熟。存在一些與母體bHl純系相比顯示降低之Her2結合親 和性的VEGF親和性改良純系。此結果指示,儘管根據 bHl-Her2複合物結構及獵搶丙胺酸掃描分析,存在以下事 實:重鏈為結合能之主要貢獻者,但輕鏈仍積極地有助於 bHl對Her2之結合能力。經表徵純系之序列及IC5〇值概括 於圖41中。大部分序列為獨特的發現表明,該等變異體之 輕鏈序列尚未針對VEGF結合而被完全優化,且有可能藉 由其他輪之選擇來進一步親和性改良bHl純系。 如表5中所示,單一 Fab對於兩個抗原之親和性顯著改良 係可達成的且通常係能實現的。舉例而言,人類VEGF之 KD 自 250(bHl ; IgG)增加至 41(bm-81 ; IgG)或 16 nM(bHl-44 ; IgG),且 HER2 之 KD 自 21(bHl ; IgG)增加至 7(bHl-81 ; IgG)或 1 nM(bHl-44 ; IgG)。 藉由在bHl之HC及LC CDR中引入突變來改良親和性。 根據關於本文所述之VEGF及HER2之功能性互補位的資訊 來選擇位置。如本文所述,藉由選擇及篩檢噬菌體呈現庫 以兩步驟分離bHl變異體。藉由基於親和性選擇所述輕鏈 同系物獵槍掃描庫來分離經改良之純系bhl-81。在第二步 驟中,藉由隨機化bHl-81之殘基自文庫中分離最高親和性 純系(bHl-44)。詳言之,寡核苷酸係設計成使bHl-81之HC 及LC中之各位點(表5)隨機化以於每一位置處編碼約50%野 142552.doc -154- 201011047 生型及50%所有其他19種胺基酸(Gallop等人,Journal of Medicinal Chimistry 37:1233, 1994) 〇To investigate whether the VEGF binding affinity of bHl can be increased by optimizing the light chain sequence before structural and functional results become available, construct a library in which the crystal structure based on the h4D542 Fab (assumed to be very similar to bHl Fab) (Eigenbrot) Et al., 2001) Diversification of CDR residues at highly accessible positions in the solvent. The targeted residues were allowed to become wild-type or a few homologous residues (Figure 34). Construct a library as described in the section "Building a Hunting Scanning Library". As described, a solution based selection method is used to select a higher affinity VEGF-conjugate. Perform two rounds of solution based selection. Stringency was increased in each round of selection by reducing the concentration of biotinylated VEGF from 50 nM in the first round to 20 nM in the second round. The 138 pure lines from the last round of selection were sequenced. Most of the pure lines were found to be unique. A high-yield ELISA assay using immobilized VEGF (8-109), anti-gD antibody, and Her2-ECD was used to identify pure lines that bind to VEGF, Her2-ECD, and anti-gD mlgG but not to BSA. The VEGF-ELIS A binding signal was corrected with an anti-gD ELISA signal to estimate the relative affinity of the VEGF-binding pure line. A pure line with a high VEGF/anti-gD ratio was chosen for further characterization. As previously described, the affinities of the selected pure lines for VEGF and Her2 were estimated by competition ELISA as indicated by the phage-presented Fab. The bHl variant showed improved VEGF binding affinity compared to the parental bHl pure line. Interestingly, even though 142552.doc -153- 201011047 does not rely on affinity selection for Her2, some pure lines have a slightly improved IC5 devaluation for Her2 binding. This indicates that it is possible to mature the bHl pure affinity without significantly affecting the Her2 binding ability in terms of VEGF binding. There are some VEGF affinity-improving lines that exhibit reduced Her2 binding affinity compared to the parent bHl pure line. This result indicates that, despite the fact that the heavy chain is a major contributor to binding energy, the light chain is actively contributing to the binding ability of bHl to Her2, based on the bHl-Her2 complex structure and the scanning alanine scanning analysis. The sequence of the characterized pure line and the IC5 enthalpy are summarized in Figure 41. The unique findings of most of the sequences indicate that the light chain sequences of these variants have not been fully optimized for VEGF binding and that it is possible to further improve the bHl pure line by further affinity selection. As shown in Table 5, a significant improvement in the affinity of a single Fab for both antigens is achievable and generally achievable. For example, the KD of human VEGF increased from 250 (bHl; IgG) to 41 (bm-81; IgG) or 16 nM (bHl-44; IgG), and the KD of HER2 increased from 21 (bHl; IgG) to 7 (bHl-81; IgG) or 1 nM (bHl-44; IgG). Affinity is improved by introducing mutations into the HC and LC CDRs of bHl. The location is selected based on information about the functional complements of VEGF and HER2 described herein. The bHl variant was isolated in two steps by selecting and screening the phage display library as described herein. The modified pure line bhl-81 was isolated by selecting the light chain homolog shotgun scanning library based on affinity. In the second step, the highest affinity pure line (bHl-44) was isolated from the library by randomizing the residues of bHl-81. In particular, the oligonucleotides are designed to randomize the points in the HC and LC of bHl-81 (Table 5) to encode approximately 50% of the wild 142552.doc -154- 201011047 at each location. 50% of all other 19 amino acids (Gallop et al, Journal of Medicinal Chimistry 37: 1233, 1994)
對於Fab片段及IgG抗體量測bHl親和性改良變異體之 KD(表5)。Fab片段及IgG抗體分別表現於大腸桿菌及293細 胞中,且如本文所述加以純化。如Lee等人(J. Mol. Biol. 340:1073, 2004)中所述,使用利用BIAcore3000之表面電漿 共振(SPR)量測來測定Fab片段及IgG抗體之結合親和力。 為研究單價Fab片段形式之抗體的親和性,將抗原 (hVEGF109、鼠類VEGF102及HER2 ECD)以低密度固定於 BIAcore CM5晶片上。使Fab片段之連續稀釋液與固定化抗 原接觸且藉由SPR量測結合反應。使用1:1朗繆爾結合模型 來計算tn、hff及KD。為測定IgG抗體之KD,藉由固定化 之抗Fc抗體於BIAcore CM5晶片上捕捉IgG,且暴露於 hVEGF109、鼠類VEGF102及HER2-ECD之連續稀釋液中。 對於HER2而言,使用簡單的1:1朗繆爾結合模型來測定 KD,而VEGF需要二價分析物模型。所有實驗均在3(TC下 進行。 表5以粗體顯示隨機化位置且概述bHl、bHl-81及bHl-44之CDR序列(SEQ ID ΝΟ:1-9及39-41)及其親和性(如藉由 表面電漿共振所測定)。 142552.doc •155· 201011047 表5.具有經改良雙重親和性之bHl的變異體 抗髖 輕鏈 Kd(nM) HER2 hVEGF mVEGF Fib IgG Fab l^j CDR-LI CDR-L2 CDRL3 3¾¾务袞衾戔SS S ^ Κ S 3: Κ 5; Si S S S 岁 bHl 300 250 >1000 i6 21 bHU8] N A K T 58 41 ND ISO 6 7 bH-44 Ν A Κ Τ F S S » 16 33 36 0 7 ' 重鏈 抗醴 CDR-HI CDR-H2 CDR-H3 r a s «ss Λ « g 9» « # s * 1 | I ° s bHl bHt-81 bH-44 Ν 1 K D T Y S G R 1 VPTNCYTR S E W G C V ,D G F Y A M D V ND=未測出。 藉由BIAcore量測抗體對人類VEGF109、鼠類VEGF1〇2及 HER2 ECD之單價親和性。表5顯示各結合相互作用之代表 性解離常數(Kd)。在BIAcore實驗中使用VEGF(VEGFi〇9)之 受體結合片段,此係因為bHl變異體在溶液競爭實驗中以 類似親和性結合全長蛋白(VEGF165)及VEGF1()9(資料未顯 示)。使用不同檢定格式及評估模型來計算如本文所述之 Fab片段/IgG抗體之Kd。不同檢定/評估格式對於個別相互 作用產生一致之解離常數。 實例5.以細胞檢定分析IgG活性 為確定bHl及3-1抗體是否能抑制hVEGF165誘發之人類臍 靜脈内皮(HUVEC)細胞之增殖,以增殖檢定對其進行測 試。如(Fuh等人,J_ Biol. Chem. 273:11197,1998)所述使 人類臍靜脈内皮細胞(HUVEC)(Cambrex, East Rutherford, NJ)生長且加以檢定。在96孔細胞培養盤之每一孔中塗覆 大約4000個HUVEC且於補充有1.0%(v/v)胎牛血清之杜氏 142552.doc •156· 201011047 改良依格氏/F-12培養基(1:1)(檢定培養基)中培育18小時。 首先以可刺激次大DNA合成之VEGF量滴定具有固定量 VEGF(0.2 nM最終濃度)之新鮮檢定培養基,且隨後將增加 濃度之抗VEGF抗體(例如,bHl)添加至細胞中。在37°C下 培育18小時之後,對細胞以每孔〇·5 gCi [3H]胸苷作脈衝處 理24小時,且加以收集以便以TopCount微定量盤式閃爍計 數器(TopCount Microplate Scintillation counter)計數。結 果表明3-1及bHl兩者均可藉由防止hVEGF誘發之信號傳導 及隨後之增殖來抑制VEGF誘發之HUVEC細胞生長。使用 Avastin®抗體(抗VEGF)作為陽性對照且使用Herceptin®抗 體作為陰性對照(圖42)。The KD of the bH1 affinity-modified variant was measured for the Fab fragment and the IgG antibody (Table 5). Fab fragments and IgG antibodies were visualized in E. coli and 293 cells, respectively, and purified as described herein. The binding affinity of Fab fragments and IgG antibodies was determined using surface acoustic resonance (SPR) measurements using BIAcore 3000 as described in Lee et al. (J. Mol. Biol. 340: 1073, 2004). To study the affinity of antibodies in the form of monovalent Fab fragments, antigens (hVEGF109, murine VEGF102 and HER2 ECD) were immobilized on BIAcore CM5 wafers at low density. Serial dilutions of the Fab fragments were contacted with the immobilized antigen and the binding reaction was measured by SPR measurement. The 1:1 Langmuir combination model was used to calculate tn, hff, and KD. To determine the KD of the IgG antibody, IgG was captured on a BIAcore CM5 wafer by immobilized anti-Fc antibody and exposed to serial dilutions of hVEGF109, murine VEGF102 and HER2-ECD. For HER2, a simple 1:1 Langmuir binding model was used to determine KD, while VEGF required a bivalent analyte model. All experiments were performed at 3 (TC). Table 5 shows the randomized positions in bold and summarizes the CDR sequences of bHl, bHl-81 and bHl-44 (SEQ ID 1: 1-9 and 39-41) and their affinity. (as determined by surface plasma resonance) 142552.doc • 155· 201011047 Table 5. Variants with improved dual affinity bHl anti-hip light chain Kd(nM) HER2 hVEGF mVEGF Fib IgG Fab l^j CDR-LI CDR-L2 CDRL3 33⁄43⁄4衮衾戋 SS S ^ Κ S 3: Κ 5; Si SSS years old bHl 300 250 >1000 i6 21 bHU8] NAKT 58 41 ND ISO 6 7 bH-44 Ν A Κ Τ FSS » 16 33 36 0 7 ' Heavy Chain Resistant CDR-HI CDR-H2 CDR-H3 ras «ss Λ « g 9» « # s * 1 | I ° s bHl bHt-81 bH-44 Ν 1 KDTYSGR 1 VPTNCYTR SEWGCV DGFYAMDV ND = not detected. The monovalent affinity of antibodies to human VEGF109, murine VEGF1〇2 and HER2 ECD was measured by BIAcore. Table 5 shows the representative dissociation constants (Kd) for each binding interaction. Receptor-binding fragment of VEGF (VEGFi〇9) was used, because the bHl variant has a similar affinity in the solution competition experiment. Full-length protein (VEGF165) and VEGF1 () 9 (data not shown). Different assay formats and evaluation models were used to calculate the Kd of Fab fragments/IgG antibodies as described herein. Different assay/evaluation formats produced consistent for individual interactions. Dissociation constants. Example 5. Analysis of IgG activity by cell assay To determine whether bHl and 3-1 antibodies inhibit the proliferation of hVEGF165-induced human umbilical vein endothelial (HUVEC) cells, they were tested for proliferation assays. (Fuh et al. Human umbilical vein endothelial cells (HUVEC) (Cambrex, East Rutherford, NJ) were grown and assayed as described in J_Biol. Chem. 273:11197, 1998. Apply approximately 4000 to each well of a 96-well cell culture dish. HUVECs were incubated for 18 hours in Duss 142552.doc • 156· 201011047 modified Ig's/F-12 medium (1:1) (assay medium) supplemented with 1.0% (v/v) fetal bovine serum. Fresh assay medium with a fixed amount of VEGF (0.2 nM final concentration) is first titrated with a VEGF amount that stimulates sub-DNA synthesis, and then an increased concentration of anti-VEGF antibody (e.g., bHl) is added to the cells. After incubation for 18 hours at 37 ° C, cells were pulsed for 24 hours per well of 5 gCi [3H] thymidine and collected for counting with a TopCount Microplate Scintillation counter. The results indicate that both 3-1 and bHl can inhibit VEGF-induced HUVEC cell growth by preventing hVEGF-induced signaling and subsequent proliferation. Avastin® antibody (anti-VEGF) was used as a positive control and Herceptin® antibody was used as a negative control (Fig. 42).
為研究雙特異性抗Her2/VEGF抗體與表現於哺乳動物細 胞上之Her2的結合,藉由流動式細胞測量術研究bHl及 bH3抗體與過度表現Her2之NR6纖維母細胞(NR6-Her2)之 結合。將一百萬個NR6-Her2細胞與100 pg/ml Fab及IgG — 起培育1小時,繼而與結合Alexa488之鼠類抗人類IgG抗體 一起培育1小時。作為陰性對照,研究Fab及IgG與非表現 性NR6細胞之結合。如圖43中所表明,如同Fab及IgG ’ bH 1及bH3特異性地結合至NR6細胞上之Her2。 圖44顯示bHl與VEGF或HER2之競爭性結合實驗的結 果。bHl雖然由於其親和性降低因此與Herceptin®抗體相 比效率較低,但在培育5天後其以200 nM之IC5G(此與其300 nM之親和性相一致)抑制VEGF誘發之人類臍靜脈内皮細胞 (HUVEC)的增殖,且抑制表現HER2之乳癌細胞株BT474的 142552.doc -157- 201011047 增殖,(圖45)。Herceptin® IgG抗體及貝伐單抗(抗VEGF) 用作對照物。如国45中所示,bHl-81及bHl-44抗體以與 bH 1相比較大之程度抑制VEGF誘發之HUVEC細胞的增殖 及BT474細胞之生長。bHl變異體之效能增加與其相對親 和性相關。最高親和性變異體(bHl-44)分別以類似於貝伐 單抗或Herceptin®抗體之效能抑制HUVEC及BT474細胞之 生長。 為進行該等實驗,以增加濃度之人類IgG處理經VEGF刺 激之HUVECs,在培育兩天後如Liang等人(J. Biol. Chem. 281:951,2006)中所述測量增殖抑制作用。將乳癌細胞 BT474培養於補充10% FBS之RPMI培養基中。對於檢定, 於96孔培養盤之每個孔中塗覆104個細胞,且於37°C下培 育隔夜(18小時)。向細胞中添加增加濃度之人類IgG。隨 後細胞於37°C下培育五天,繼而根據製造商說明書添加 10% AlamarBlue(Biosource International, Camarillo, CA)。 在6小時之後藉由測量螢光信號來測定對HER2表現細胞增 殖的抗體依賴性抑制作用。 實例6.結合特異性之分析 測定源自LC庫之抗體的結合特異性。藉由ELISA檢定與 各種固定化純化蛋白質或細胞溶胞物(包括同源抗原)結合 之IgGs。將抗原固定且與15 pg/mL濃度之hlgG—起培育一 小時。以分光光度法偵測所結合之IgG(450 nm下之光密 度;y軸;圖46)。檢定中所包括之蛋白質為(圖46中自左至 右):血管内皮生長因子A(VEGF)、鼠類血管内皮生長因 142552.doc -158- 201011047 子(鼠類VEGF)、血管内皮生長因子C(hVEGF-C)、血管内 皮生長因子D(hVEGF-D)、HER2胞外域(HER2 ECD)、表皮 生長因子受體胞外域(hEGFR)、ErbB3/HER3胞外域(HER3 ECD)、人類死亡受體5(hDR5)、牛血清白蛋白(BSA)、酪 蛋白、胎牛血清(FBS)、中性鏈親和素、5%牛奶、小鼠纖 維母細胞溶胞物、及添加有hVEGF-A或HER2 ECD之小鼠 纖維母細胞溶胞物。在圖46中,誤差條表示兩次重複之標 準誤差平均值(SEM)。未測抗體bH3、3-1、bDl、bD2、4-1 籲❿ 及4-5與鼠類VEGF、HER3 ECD、中性鏈親和素、5%牛 奶、添加有hVEGF-A之細胞溶胞物、及添加有HER2 ECD 之細胞溶胞物的結合。To study the binding of bispecific anti-Her2/VEGF antibodies to Her2 expressed on mammalian cells, the binding of bHl and bH3 antibodies to NR6 fibroblasts (NR6-Her2) overexpressing Her2 was studied by flow cytometry. . One million NR6-Her2 cells were incubated with 100 pg/ml Fab and IgG for 1 hour and then incubated with Alexa488-conjugated murine anti-human IgG antibody for 1 hour. As a negative control, the binding of Fab and IgG to non-expressing NR6 cells was investigated. As indicated in Figure 43, as Fab and IgG'bH1 and bH3 specifically bind to Her2 on NR6 cells. Figure 44 shows the results of a competitive binding assay of bH1 with VEGF or HER2. Although bH1 is less efficient than Herceptin® antibody due to its reduced affinity, it inhibits VEGF-induced human umbilical vein endothelial cells with IC nig of 200 nM (this is consistent with its affinity of 300 nM) after 5 days of incubation. (HUVEC) proliferation, and inhibition of 142552.doc-157-201011047 proliferation of breast cancer cell line BT474 expressing HER2 (Fig. 45). Herceptin® IgG antibody and bevacizumab (anti-VEGF) were used as controls. As shown in the country 45, the bHl-81 and bHl-44 antibodies inhibited the proliferation of VEGF-induced HUVEC cells and the growth of BT474 cells to a greater extent than bH1. The increase in potency of the bHl variant is related to its relative affinity. The highest affinity variant (bHl-44) inhibited the growth of HUVEC and BT474 cells, respectively, with potency similar to bevacizumab or Herceptin® antibodies. For these experiments, VEGF-stimulated HUVECs were treated with increasing concentrations of human IgG, and proliferation inhibition was measured two days after the incubation as described in Liang et al. (J. Biol. Chem. 281: 951, 2006). Breast cancer cells BT474 were cultured in RPMI medium supplemented with 10% FBS. For the assay, 104 cells were coated in each well of a 96-well culture dish and incubated overnight (18 hours) at 37 °C. An increased concentration of human IgG is added to the cells. The cells were then incubated at 37 °C for five days, followed by the addition of 10% AlamarBlue (Biosource International, Camarillo, CA) according to the manufacturer's instructions. Antibody-dependent inhibition of HER2 expressing cell proliferation was determined after 6 hours by measuring the fluorescent signal. Example 6. Analysis of binding specificity The binding specificity of antibodies derived from LC pools was determined. IgGs bound to various immobilized purified proteins or cell lysates (including homologous antigens) were assayed by ELISA. The antigen was fixed and incubated with hlgG at a concentration of 15 pg/mL for one hour. The bound IgG was detected spectrophotometrically (light density at 450 nm; y-axis; Figure 46). The proteins included in the assay are (from left to right in Figure 46): vascular endothelial growth factor A (VEGF), murine vascular endothelial growth factor 142552.doc -158- 201011047 (murine VEGF), vascular endothelial growth factor C (hVEGF-C), vascular endothelial growth factor D (hVEGF-D), HER2 extracellular domain (HER2 ECD), epidermal growth factor receptor extracellular domain (hEGFR), ErbB3/HER3 extracellular domain (HER3 ECD), human death Body 5 (hDR5), bovine serum albumin (BSA), casein, fetal bovine serum (FBS), neutral streptavidin, 5% milk, mouse fibroblast lysate, and added hVEGF-A or Mouse fibroblast lysate of HER2 ECD. In Fig. 46, the error bars represent the average of the standard errors (SEM) of the two iterations. Untested antibodies bH3, 3-1, bD1, bD2, 4-1, and 4-5 with murine VEGF, HER3 ECD, neutravidin, 5% milk, cell lysate supplemented with hVEGF-A And the binding of cell lysates added with HER2 ECD.
亦測定各種抗體(Avastin®抗體、Herceptin®抗體、 bHl、bH3、bH4、bHl-81 及 bHl-44)阻斷 VEGF與 VEGF 受 體結合之能力(圖47)。以增加濃度之IgG(x轴)平衡生物素 化之人類VEGF165(圖47A)或鼠類VEGF164(圖47B)。未結合 之VEGF捕捉於固定化人類VEGFR2-ECD Fc融合蛋白上且 以分光光度法偵測(於450 nm下之光密度,y軸)。亦觀測 VEGFR1之類似抑制作用。抗VEGF抗體阻斷VEGF與VEGF 受體結合。 顯示抗原VEGF及HER2在溶液中競爭結合至bHl-44雙特 異性IgG抗體(圈48)。將濃度為0.1 nM之人類bHl-44 IgG抗 體與0.1 nM經生物素標記之人類VEGF!65 —起在增加濃度 之HER2 ECD存在下培育。藉由以抗生蛋白鏈菌素-HRP偵 測之固定化抗人類Fc及bHl -44結合之生物素-VEGF來捕捉 142552.doc -159· 201011047 bHl-44。使用結合HER2上之非重疊抗原決定基之鼠類抗 HER2抗體,繼而使用結合HRP之山羊抗小鼠IgG來偵測與 經捕捉之bH卜44結合之HER2 ECD(圖48A)。將濃度為0.2 nM之人類bHl-44 IgG與0.6 nM經生物素標記之HER2—起 在增加濃度之人類VEGF165存在下培育。藉由以抗生蛋白 鏈菌素-HRP偵測之固定化抗人類Fc及bHl-44結合之生物 素-HER2 來捕捉 bHl-44(圖 48B)。 亦藉由使用FACS(螢光活化細胞揀選(Fluorescence Activated Cell Sorting);圖 49)來债測 bHl 及 bHl-44 與細胞 之特異性結合。雙特異性抗體(bHl及bHl-44)結合至表現 HER2之小鼠纖維母細胞(NR6)細胞(圖49B),但不結合至 HER2陰性NR6細胞(圖49A)。將50萬至100萬之細胞與15 pg/mL hlgG—起於冰上培育一小時。使用二次螢光PE結合 之山羊抗人類IgG偵測與細胞結合之一次抗體。使用FACS Calibur流式細胞儀分析細胞。bHl及匕1'11-44不與11£112之大 鼠直系同源物交叉反應,此係因為未偵測到與經大鼠neu 轉染之小鼠纖維母細胞(HER2之大鼠直系同源物)的結合。 為進一步表徵bHl抗體變異體bHl-81及bHl-44之特異 性,進行免疫沈澱實驗且顯示bHl抗體變異體特異性地使 VEGF或HER2而非其他蛋白質自小鼠纖維母細胞(NR6)溶 胞物中免疫沈澱出來(圖50)。對NR6細胞作非特異性生物 素標記,作溶胞處理且經細胞膜蛋白清潔劑溶解。將對應 於每毫升5百萬至一千萬個細胞的NR6細胞、添加有0.1 pg/mL經生物素標記之VEGFi65之NR6細胞或過度表現 142552.doc -160- 201011047 HER2之NR6細胞的細胞溶胞物與15 pg/mL抗體一起培育。 使用經蛋白A塗覆之瓊脂糖珠粒捕捉抗體且溶離所結合之 蛋白。藉由SDS-PAGE分離所溶離之蛋白質。將對應於大 約25至50,000個細胞之細胞溶胞物及來自大約12萬至25萬 個細胞之免疫沈澱物裝載至凝膠上。藉由西方墨點法 (Western blotting)使用抗生蛋白鍵菌素_HRP偵測所捕捉之 經生物素標記之蛋白質。 實例7.以活體内檢定分析IgG活性 為評估該等抗體之活體外雙重活性是否可轉化為相應之 活體内活性,吾人採用已知對抗VEGF抗體(C〇1〇205 ’ 一 種結腸直腸癌細胞株)或Herceptin®抗體(BT474M1,乳癌 • 細胞株)處理具反應性之小鼠異種移植腫瘤模型。詳言 之,在nu/nu小鼠中使用C〇1〇205異種移植物且在米色裸 XID小鼠中使用BT474M1異種移植物。所有動物研究均符 合美國實驗動物照護評鑒協會(American Association for Accreditation of Laboratory Animal Care)及 Genentech之實 驗動物管理與使用委員會(Institutional Animal Care and Use Committee)之準貝。 詳言之,將BT474M1(内部)及C〇1〇205(ATCC,Manassas, VA)細胞培養於RPMI培養基/10%胎牛血清中。將懸浮於漢 克氏緩衝鹽溶液(Hank's Buffered Salt Solution,HBSS)及 基底膠(matrigel)(l:l)混合物中之5χ106個BT474M1細胞注 射至經皮下植入雌二酵小球之Harlan米色裸XID小鼠 (Indianapolis,IN)的乳房脂墊中。對於C〇1〇205異種移植物 142552.doc -161- 201011047 而言,將於HBSS中之5χ106個C〇1〇205細胞經皮下注射至 Charles River nu/nu 小鼠(Hollister, CA)中。當平均腫瘤尺 寸達到約200 mm3時,將小鼠隨機分為7組,每組8隻小鼠 (BT474M1)或10隻小鼠(C〇1〇205)。每週一次經腹膜内投與 抗體。每週兩次量測腫瘤尺寸。根據V=0.5ab2計算體積(a 為腫瘤之最長尺寸且b垂直於a)。統計學評估使用單因子 分析,繼而使用雙尾學生^測試(two-tailed student i test)。 由於多重比較而引起的對α量之調整(Bonferroni)並未改變 吾人結論之意義。部分反應(PR)係定義為與V0相比腫瘤體 積減少50%至99%之反應。在第一次及第三次處理後7天收 集血清樣品。使用ELISA測定人類抗體之濃度。將驢抗人 類IgG Fc固定於免疫培養盤上。將血清及抗體標準物之稀 釋液於培養盤上培育2小時。藉由結合辣根過氧化酶之山 羊抗人類IgG Fc,繼而藉由TMB受質/1M磷酸偵測所結合 之抗體。於450/620 nm下讀取培養盤。使用4參數演算法 確定樣品濃度。 將 bHl-44 處理組與經抗 VEGF(B20-4.1)(Liang等人,J· Biol. Chem. 28 1:95 1, 2006)、Herceptin® 抗體或組合 (Herceptin®抗體+抗VEGF)處理之組相比較以進一步確定 bHl-44抗體能夠抑制VEGF及HER2介導之腫瘤生長。在所 有組中,在開始處理後7天,抗體以高含量(藉由ELIS A評 估)存在於來自C〇1〇205異種移植物之血清中,此指示正常 藥物動力學(表6)。 142552.doc -162- 201011047 表6.抗體血清含量 組 抗體濃度(pg/ml) 平均值 SD 對照組IgG 10 mg/kg 65 14 Herceptin® 10 mg/kg 83 47 抗 VEGF 10 mg/kg 20 8 抗 VEGF+Herceptin® 10+10 mg/kg 41 25 bHl-44 10 mg/kg 30 12 bHl-44 20 mg/kg 37 9 對於每一組而言,n=5 ; SD=標準偏差 ··Various antibodies (Avastin® antibody, Herceptin® antibody, bH1, bH3, bH4, bHl-81 and bHl-44) were also assayed to block the ability of VEGF to bind to VEGF receptors (Fig. 47). Biotinylated human VEGF165 (Fig. 47A) or murine VEGF164 (Fig. 47B) was equilibrated with increasing concentrations of IgG (x-axis). Unbound VEGF was captured on the immobilized human VEGFR2-ECD Fc fusion protein and detected spectrophotometrically (optical density at 450 nm, y-axis). Similar inhibition of VEGFR1 was also observed. Anti-VEGF antibodies block the binding of VEGF to the VEGF receptor. The antigens VEGF and HER2 were shown to compete for binding to the bHl-44 bispecific IgG antibody (circle 48) in solution. A human bHl-44 IgG antibody at a concentration of 0.1 nM was incubated with 0.1 nM biotinylated human VEGF!65 in the presence of increasing concentrations of HER2 ECD. 142552.doc -159· 201011047 bHl-44 was captured by immobilized anti-human Fc and bHl-44-conjugated biotin-VEGF detected by streptavidin-HRP. A murine anti-HER2 antibody that binds to a non-overlapping epitope on HER2 was used, followed by HRP-conjugated goat anti-mouse IgG to detect HER2 ECD in combination with captured bHb44 (Fig. 48A). Human bHl-44 IgG at a concentration of 0.2 nM was incubated with 0.6 nM biotinylated HER2 in the presence of increasing concentrations of human VEGF165. bHl-44 was captured by immobilized anti-human Fc and bHl-44-conjugated biotin-HER2 detected by streptavidin-HRP (Fig. 48B). The specific binding of bHl and bHl-44 to cells was also tested by FACS (Fluorescence Activated Cell Sorting; Figure 49). Bispecific antibodies (bH1 and bHl-44) bind to mouse fibroblast (NR6) cells expressing HER2 (Fig. 49B) but not to HER2 negative NR6 cells (Fig. 49A). 500,000 to 1 million cells were incubated with 15 pg/mL hlgG on ice for one hour. Primary antibody bound to cells was detected using a secondary fluorescent PE-conjugated goat anti-human IgG. Cells were analyzed using a FACS Calibur flow cytometer. bHl and 匕1'11-44 did not cross-react with 11£112 rat orthologs because no mouse fibroblasts transfected with rat neu were detected (the rats of HER2 were directly The combination of the source). To further characterize the specificity of the bHl antibody variants bHl-81 and bHl-44, immunoprecipitation experiments were performed and it was shown that bHl antibody variants specifically lyse VEGF or HER2 but not other proteins from mouse fibroblasts (NR6) The substance was immunoprecipitated (Fig. 50). NR6 cells were labeled with non-specific biotin, lysed and solubilized by cell membrane protein detergent. NR6 cells corresponding to 5 million to 10 million cells per ml, NR6 cells supplemented with 0.1 pg/mL biotinylated VEGFi65 or NR6 cells overexpressing 142552.doc-160-201011047 HER2 The cytoplasm was incubated with 15 pg/mL antibody. The protein A coated agarose beads were used to capture the antibody and dissolve the bound protein. The solubilized protein was separated by SDS-PAGE. Cell lysates corresponding to about 25 to 50,000 cells and immunoprecipitates from about 120,000 to 250,000 cells are loaded onto the gel. The captured biotin-labeled protein was detected by Western blotting using the anti-protein _HRP. Example 7. Analysis of IgG activity by in vivo assay To assess whether the in vitro dual activity of such antibodies can be converted to the corresponding in vivo activity, we have used a known anti-VEGF antibody (C〇1〇205' a colorectal cancer cell line. Or a Herceptin® antibody (BT474M1, breast cancer cell line) to treat a reactive mouse xenograft tumor model. In particular, C〇1〇205 xenografts were used in nu/nu mice and BT474M1 xenografts were used in beige nude XID mice. All animal studies were in accordance with the American Association for Accreditation of Laboratory Animal Care and Genentech's Institutional Animal Care and Use Committee. Specifically, BT474M1 (internal) and C〇1〇205 (ATCC, Manassas, VA) cells were cultured in RPMI medium/10% fetal bovine serum. 5χ106 BT474M1 cells suspended in a mixture of Hank's Buffered Salt Solution (HBSS) and matrigel (l:l) were injected into the Harlan beige nude implanted subcutaneously into the female disaccharide pellet. XID mice (Indianapolis, IN) in the breast fat pad. For C〇1〇205 xenografts 142552.doc -161- 201011047, 5χ106 C〇1〇205 cells in HBSS were injected subcutaneously into Charles River nu/nu mice (Hollister, CA). When the average tumor size reached approximately 200 mm3, the mice were randomized into 7 groups of 8 mice (BT474M1) or 10 mice (C〇1〇205). The antibody is administered intraperitoneally once a week. Tumor size was measured twice a week. The volume is calculated from V = 0.5 ab2 (a is the longest dimension of the tumor and b is perpendicular to a). Statistical evaluation was performed using a one-factor analysis followed by a two-tailed student i test. The adjustment of the amount of alpha due to multiple comparisons (Bonferroni) did not change the meaning of our conclusions. The partial response (PR) system is defined as a response in which the tumor volume is reduced by 50% to 99% compared to V0. Serum samples were collected 7 days after the first and third treatments. The concentration of human antibodies was determined using ELISA. The donkey anti-human IgG Fc was immobilized on an immunoculture dish. The serum and antibody standard dilutions were incubated on the plates for 2 hours. The bound antibody was detected by binding to horseradish peroxidase goat anti-human IgG Fc followed by TMB receptor/1M phosphate. The plate was read at 450/620 nm. The sample concentration was determined using a 4-parameter algorithm. The bHl-44 treatment group was treated with anti-VEGF (B20-4.1) (Liang et al, J. Biol. Chem. 28 1:95 1, 2006), Herceptin® antibody or combination (Herceptin® antibody + anti-VEGF) The groups were compared to further confirm that bHl-44 antibody is capable of inhibiting VEGF and HER2-mediated tumor growth. In all groups, antibodies were present at high levels (evaluated by ELIS A) in serum from C〇1〇205 xenografts 7 days after the start of treatment, indicating normal pharmacokinetics (Table 6). 142552.doc -162- 201011047 Table 6. Antibody serum content group antibody concentration (pg/ml) mean SD control group IgG 10 mg/kg 65 14 Herceptin® 10 mg/kg 83 47 anti-VEGF 10 mg/kg 20 8 anti- VEGF+Herceptin® 10+10 mg/kg 41 25 bHl-44 10 mg/kg 30 12 bHl-44 20 mg/kg 37 9 For each group, n=5; SD=standard deviation··
每週以10 mg/kg投與之bHl-44與對照抗體相比抑制 C〇1〇205腫瘤生長(p<0.0001,n=10),其功效與抗VEGF(每 週10mg/kg)類似,而Herceptin®抗體對C〇1〇205生長無影響 (p=0.12,n=10)。如所預期,組合治療顯示與單獨抗VEGF 類似之功效。以每週10及20 mg/kg投與之bm-44抗體產生 劑量依賴性反應。在BT474M1模型中,在經bHl-44抗體 (每週 10 mg/kg,p=0.0005, n=8 及每週 20 mg/kg,p=0.0001, n=7)處理之小鼠組中觀測到顯著腫瘤生長抑制作用。如同 以Herceptin®抗體或Herceptin®/抗VEGF組合給藥之組, 一半以上的經bHl-44抗體處理之腫瘤顯示自初始體積消退 50%以上(亦即,部分反應,圖51)。另一方面,單獨抗 VEGF與對照組相比對於BT474M1僅展現適度生長抑制作 用(p=0.06,n=7),且展現無部分反應。因此證明雙特異性 bHl-44抗體抑制對於活體内腫瘤生長而言重要之兩種不同 機制。 以上結果指示bHl抗體之親和性改良型變異體(例如, bHl-44及bHl-81)抑制對於活體内腫瘤生長而言重要之兩 142552.doc • 163- 201011047 種機制的潛力。 實例8.表徵VEGF及HER2舆bHl及bHl-44之結合界面 為進一步比較bHl及bm-44之結構特徵,識別VEGF及 HER2與該等抗體之結合界面。根據晶體結構座標 3BDY(bHl/VEGF)及 3BEl(bHl/HER2)識別表 7 中所列舉之 結構性接觸。使用程式XSAE計算結合界面。該程式定義 界面為極性的、疏水性的且為混合型的。表7列舉在HER2 或VEGF結合後>25%之總表面積被包埋之bHl殘基。表7亦 列舉bHl殘基之4.5 A以内的VEGF及HER2殘基。基於晶體©© 結構座標3BDY、3BE1及1N8Z(PDB),使用IMOL計算在複 合物形成後被包埋之每一殘基的表面積。表11中報導之極 性及疏水性界面區域反映極性界面區域及混合型之一半。 所報導之疏水性界面區域由疏水性區域與混合型之一半組 成。 晶體結構及丙胺酸掃描顯示bHl在HER2上保留與 Herceptin®抗體相同之結合抗原決定基(Bostrom等人,bHl-44 administered at 10 mg/kg per week inhibited C〇1〇205 tumor growth (p<0.0001, n=10) compared to the control antibody, and its efficacy was similar to that of anti-VEGF (10 mg/kg per week). The Herceptin® antibody had no effect on the growth of C〇1〇205 (p=0.12, n=10). As expected, combination therapy showed efficacy similar to anti-VEGF alone. The bm-44 antibody administered at 10 and 20 mg/kg per week produced a dose-dependent response. In the BT474M1 model, observation was observed in mice treated with bHl-44 antibody (10 mg/kg per week, p=0.0005, n=8 and 20 mg/kg per week, p=0.0001, n=7). Significant tumor growth inhibition. As with the combination of Herceptin® antibody or Herceptin®/anti-VEGF combination, more than half of the tumors treated with the bHl-44 antibody showed more than 50% regression from the initial volume (i.e., partial response, Figure 51). On the other hand, anti-VEGF alone showed only a modest growth inhibitory effect on BT474M1 compared to the control group (p = 0.06, n = 7), and showed no partial response. This demonstrates that bispecific bHl-44 antibodies inhibit two different mechanisms important for tumor growth in vivo. The above results indicate that the affinity-modified variants of the bHl antibody (e.g., bHl-44 and bHl-81) inhibit the potential of two mechanisms important for tumor growth in vivo 142552.doc • 163- 201011047. Example 8. Characterization of the binding interface of VEGF and HER2舆bH1 and bHl-44 To further compare the structural features of bHl and bm-44, the binding interfaces of VEGF and HER2 to these antibodies were identified. The structural contacts listed in Table 7 are identified based on the crystal structure coordinates 3BDY(bHl/VEGF) and 3BEl(bHl/HER2). Use the program XSAE to calculate the combined interface. The program defines interfaces that are polar, hydrophobic, and hybrid. Table 7 lists bH1 residues that are embedded in the total surface area of > 25% after HER2 or VEGF binding. Table 7 also lists VEGF and HER2 residues within 4.5 A of the bH1 residue. Based on the crystal ©© structural coordinates 3BDY, 3BE1 and 1N8Z (PDB), the surface area of each residue that was embedded after the formation of the complex was calculated using IMOL. The polar and hydrophobic interface regions reported in Table 11 reflect one of the polar interface regions and the hybrid type. The hydrophobic interface region reported consists of a hydrophobic region and a mixed half. Crystal structure and alanine scanning showed that bHl retained the same binding epitope as Herceptin® antibody on HER2 (Bostrom et al.
2009)。與HER2複合之Hereeptin® Fab的晶體結構良好疊 加至bHl/HER2複合物上(0.8 A 之 r.m.s.d)(Bostrom等人, 2009 ; Cho等人,2003)。此外,保留根據丙胺酸掃描突變 誘發貢獻總結合能的10%以上之Herceptin®抗體殘基,且 其中許多亦為bHl及bHl-44之結合熱點之一部分(Bostrom 等人,2009 ; Kelley 及 O'Connell,1993)(表 14,圈 62)。 bHl/VEGF與bHl/HER2之間的界面分別包埋1506 A2及1579 A2, 且主要為疏水性的(分別為60°/。及63%)。Herceptin®/HER2 142552.doc •164· 201011047 結合界面具有與bHl/HER2界面類似之尺寸及組成(1524 A2, 60%疏水性,表11),且亦以高形狀互補性來表徵(表 8)(Bostrom等人,2009)。 ·· 表 7. bHl Fab/HER2 ECD 與 bHl/Fab/VEGFi〇9 之複合物之 結構接觸列表。該表列舉在HER2或VEGF結合後>25%之總 表面積被包埋之殘基。列舉bHl殘基之4.5 A以内的VEGF 及HER2殘基。基於晶體結構座標3BDY、3BE1及 1N8Z(PDB),使用IMOL·計算在複合物形成後被包埋之每 一殘基的表面積。 bHl殘基 由HER2包埋之面積(%> 接觸bHl之HER2殘基 由VEGF包埋之面積(%) 接觸bHl之VEGF殘基 Υ33 48 E558 F573 87 H86 R50 97 E558 D560 F573 35 H86 Υ52 30 H86 Υ56 42 P557 E558 R58 50 E558 Q56I W95 100 P572 F573 61 H86 Q87 G99 93 D570 P579 K593 75 K48 183 Q89 YlOOa 80 D570 P571 P572 F573 88 183 K84 P85 H86 087 G88 Q89 S28I29S30G31Y32W5Y53H91Y92T93T94 ί t 2089778546 I91R8H9G8Q8F1F1G8Y4K8H8 5977698589597481766155 97 D570 P571 62 K593 P603 44 P603 C604 90 P571 P572 55 K569 P571 68 D560 P572 A600 C601 Q602 P605 P572 G92 E93 H90 191 G92 191 Q89 H90 191 H90 M81 Q89 M18 191 Q89 K84 G88 Q89 H90 Q87 G88 087 如(Lawrence等人,1993)所述測定抗體與抗原之間的形 狀互補性(如表8中以Sc所表示)。類似於Herceptin®抗體與 HER2之間的互補性,bHl/VEGF與bHl/HER2複合物之高 形狀互補性係在所報導之抗體-抗原複合物之範圍内(Sc為 約 0·64 至 0.68 ; Lawrence 等人,1993)。HER2 與 bHl 在其 VEGF結合構形中之疊加或VEGF與bHl在其HER2結合形式 • 165- 142552.doc 201011047 中之疊加揭示當使抗體與無關抗原並置時所觀測之形狀互 補性很小(Sc為約0.35 ; Lawrence等人,1993)。該等結果 表明bHl重排以容納兩種不同抗原之程度。 表8· bHl之結合HER2及VEGF的不同表面構形。 抗體/抗原複合物之形狀互補性 抗體 抗原 Sc* 赫赛汀 HER2 0.75 bHl HER2 0.72 bHl VEGF 0.68 bHl(結合VEGF之構形) HER2 0.40 bHl (結合HER2之構形) VEGF 0.44 *Sc=中值形狀互補性統計 藉由自bHl之噬菌體呈現抗體庫選擇高親和性變異體 bHl-44來改良bHl之親和性。獵搶丙胺酸掃描突變誘發表 明bHl-44保留bHl之抗原結合的熱點(表9A-B、10及14)。 使用上文關於bHl之獵槍丙胺酸掃描突變誘發所述的技術 來進行bHl-44之獵搶丙胺酸掃描突變誘發。 在表9A-B中,丙胺酸突變(ml)或額外突變(m2,m3 ;由 於獵槍密碼子之限制)或同源胺基酸突變(m4)之效應係以 VEGF(表9A)或HER2(表9B)結合純系中野生型(wt)之出現 率或VEGF(表9A)或HER2(表9B)結合純系之野生型/突變型 來計算。當wt為丙胺酸時,其經甘胺酸取代(ml)。對於蛋 白質摺疊/表現效應而言,藉由除以來自呈現選擇之野生 型/突變型比率來校正野生型/突變型比率,以獲得F值。獨 立地藉由選擇結合至蛋白L之純系進行呈現選擇,其中該 蛋白L結合抗體輕鏈之非線性抗原決定基。當僅Fab重鏈與 噬菌體外鞠蛋白(p3)融合時,蛋白L結合指示輕鏈與重鏈 142552.doc -166- 201011047 之適當摺疊及締合。 在表10中’列舉在晶體結構中接觸VEGF及/或HER2之 bHl及bHl-44的抗體殘基。結合之能量熱點係由產生大於總 相互作用結合能之大約10%的△△GwtMa之抗體殘基所界定。 表11中之資料指示結合界面之極性及尺寸在bjji/VEGF、 bHl/HER2與Herceptin®/HER2複合物之間係類似的。使用 XSAE分析每一界面之極性。除非另外指示,否則表11中 所示之所有數字表示以A2計之面積。 表9入·就結合至VEGF而言對bHl-44 Fab之獵槍丙胺酸掃描及同系 物掃描結果。 抗原遘擇(VEGF) 呈現選擇(安白L} 值 AAGm«/x«s(kcal/mol) 野生野生野生野生野生野生野生野生F野生F野生F野生F野生 型/突型/突型/突型/突型/突型/突型/突型/突奴突型/突型/突型/突 變型1變型2變型3變型4變型1變型2變型3變型4轡枣1變型2變型3變型4 /x**· /x**2 */«幻《料 CDR-Ll §lI29A30K30iiiG31Y32 0.3 1.0 9.0 1.2 0.8 1.8 0.6 3.5 1.2 0‘6 39.0 39.0 3.9 36.0 0.8 2.8 ΝΑ ΝΑ 1.7 0.4 3.0 2.7 9.0 1.6 1.4 7.0 ΝΑ ΝΑ 1.4 0.9 16.0 5.3 0.5 0.9 2.3 15.7 ΝΑ ΝΑ 74.0 1.7 24.0 ΝΑ ΝΑ 74.0 2.6 46.0 23.0 46.0 74.0 0.5 0,9 0.9 0.7 ΝΑ 3.1 ΝΑ 2.1 ΝΑ ΝΑ 1.9 0.4 10 0.4 ΝΑ 1.1 ΝΑ 0.7 ΝΑ ΝΑ 0.3 2.8 8.4 0.8 0.20.2 0.51.0 0.5 3.01.6 0.4 2.8 46.8 6.5 2.1 7.7 7.1 9.1 9.4 99.1 1.1 0.7 59.8 0.9 2.6 12.4 20.3 0.5 -0.6 3.5 0.1 0.6 8.8 42.7 2.3 9.9 11 7.8 8.7 0.4 2.7 1.2 0.7 0.9 1.2 150.4 1.3 24.3 1.3 152.2 45.9 2.7 0.04 •0.2 2.4 -0.1 0.6 1.5 1.8 0.7 1.3 1.2 -0.2 3.0 -0.5 -1.1 2.2 1.4 1.3 0.6 -0.1 3.0 1.9 2.3 CDR-L2 CDR-L3 W50 G51 S52 F53 H91 Y92 593 594 46.0 15.3 46.0 74.0 2.3 1.5 2.4 1.1 20.4 10.2 19.2 65.1 1.8 1.4 1.7 2.5 24.0 ΝΑ ΝΑ 74.0 7.3 ΝΑ ΝΑ 7.5 3.3 9.8 0.7 1.4 15.7 ΝΑ ΝΑ 36.0 4.1 ΝΑ ΝΑ 7.5 3.9 4.8 0.8 0.9 22.0 44.0 14.7 5.7 1.9 2.4 1.4 0.4 11.6 18.1 10.8 13.5 1.5 1.7 1.4 1.5 7.3 44.0 44.0 73-0 0.0 0.1 0.3 2.6 150.3 880.0 154.0 27.9 3.0 4.0 3.0 2.0 48.0 48.0 48.0 13.8 3.8 6.3 1.0 2.8 12.6 7.6 46.7 5.0 1.5 1.2 2.3 1.0 1.0 ΝΑ ΝΑ 1.7 3.0 ΝΑ ΝΑ 2.5 0.4 0.7 -0.6 -0.2 15.7 ΝΑ ΝΑ 3.4 1.0 ΝΑ ΝΑ 0.9 15.3 3.7 1.6 0.8 CDR-H1 S30 G31 Τ32 Υ33 ·2·4·50· 12 0 1 ναναναξ NANANA2'2 ·2·2·9·4 5 ·7·6·52· 15 0 1 NANANA2.0 A A A 8 N N N a ·3·°6 1-5·0· ο ο I2· 5 °· ·3*~ΐ·9 0.00.4-0.41.2 4 ·°·2009). The crystal structure of Hereeptin® Fab complexed with HER2 was well superposed on the bHl/HER2 complex (0.8 A r.m.s.d) (Bostrom et al., 2009; Cho et al., 2003). In addition, more than 10% of Herceptin® antibody residues that contribute to total binding energy based on alanine scanning mutations are retained, and many of them are also part of the binding hotspots of bHl and bHl-44 (Bostrom et al., 2009; Kelley and O' Connell, 1993) (Table 14, circle 62). The interface between bHl/VEGF and bHl/HER2 was embedded in 1506 A2 and 1579 A2, respectively, and was mainly hydrophobic (60°/. and 63%, respectively). Herceptin®/HER2 142552.doc •164· 201011047 The binding interface has a similar size and composition to the bHl/HER2 interface (1524 A2, 60% hydrophobicity, Table 11) and is also characterized by high shape complementarity (Table 8). (Bostrom et al., 2009). · Table 7. Structural contact list of bHl Fab/HER2 ECD and bHl/Fab/VEGFi〇9 complexes. The table lists residues that are embedded in > 25% of the total surface area after HER2 or VEGF binding. List the VEGF and HER2 residues within 4.5 A of the bHl residue. Based on the crystal structure coordinates 3BDY, 3BE1, and 1N8Z (PDB), the surface area of each residue that was embedded after the formation of the composite was calculated using IMOL. Area of bHl residue embedded by HER2 (%> Area of HER2 residue exposed to bHl VEGF-embedded area (%) Contacted VEGF residue of bHl Υ33 48 E558 F573 87 H86 R50 97 E558 D560 F573 35 H86 Υ52 30 H86 Υ 42 42 42 42 42 42 42 42 42 42 42 42 42 42 42 42 42 42 42 44 P603 C604 90 P571 P572 55 K569 P571 68 D560 P572 A600 C601 Q602 P605 P572 G92 E93 H90 191 G92 191 Q89 H90 191 H90 M81 Q89 M18 191 Q89 K84 G88 Q89 H90 Q87 G88 087 As described (Lawrence et al., 1993) The shape complementarity between the antibody and the antigen (as indicated by Sc in Table 8). Similar to the complementarity between the Herceptin® antibody and HER2, the high shape complementarity of the bHl/VEGF and bHl/HER2 complexes is Reported antibody-antigen complexes (Sc is about 0.64 to 0.68; Lawrence et al., 1993). HE The superposition of R2 and bHl in its VEGF binding conformation or the superposition of VEGF and bHl in its HER2 binding form • 165-142552.doc 201011047 reveals that the shape complementarity observed when the antibody is juxtaposed with an unrelated antigen is small (Sc It is about 0.35; Lawrence et al., 1993). These results indicate that bH1 rearranges to accommodate two different antigens. Table 8. bHl binding to different surface configurations of HER2 and VEGF. Antibody/antigen complex shape complementation Sex antibody antigen Sc* Herceptin HER2 0.75 bHl HER2 0.72 bHl VEGF 0.68 bHl (configuration of binding to VEGF) HER2 0.40 bHl (configuration of binding to HER2) VEGF 0.44 *Sc = median shape complementarity statistics by bHl The phage display antibody library selects the high affinity variant bHl-44 to improve the affinity of bHl. Hunting for alanine scanning mutation induction indicated that bHl-44 retained the antigen binding hotspot of bHl (Tables 9A-B, 10 and 14). The technique described above for the bHl shotgun alanine scanning mutation was used to induce bHl-44 hunting for alanine scanning mutation induction. In Tables 9A-B, the effects of alanine mutation (ml) or additional mutations (m2, m3; due to the limitations of the shotgun codon) or homologous amino acid mutations (m4) are VEGF (Table 9A) or HER2 ( Table 9B) was calculated in conjunction with the appearance of wild type (wt) in the pure line or VEGF (Table 9A) or HER2 (Table 9B) in combination with the wild type/mutant type of the pure line. When wt is alanine, it is substituted with glycine (ml). For protein folding/expression effects, the wild type/mutant ratio was corrected by dividing by the wild type/mutant ratio from the selection to obtain the F value. The selection is presented independently by selecting a pure line that binds to protein L, which binds to the non-linear epitope of the antibody light chain. When only the Fab heavy chain is fused to the phage in vitro prion protein (p3), protein L binding indicates proper folding and association of the light and heavy chains 142552.doc-166-201011047. In Table 10, the antibody residues which contact bH1 and bH1-44 of VEGF and/or HER2 in the crystal structure are listed. The combined energy hotspot is defined by antibody residues that produce greater than about 10% of the total interaction binding energy of ΔΔGwtMa. The data in Table 11 indicates that the polarity and size of the binding interface are similar between bjji/VEGF, bHl/HER2 and Herceptin®/HER2 complexes. Use XSAE to analyze the polarity of each interface. All numbers shown in Table 11 indicate the area in A2 unless otherwise indicated. Table 9 shows the results of shotgun alanine scanning and homologous scanning of bHl-44 Fab for binding to VEGF. Antigen selection (VEGF) presents selection (an white L} value AAGm«/x«s(kcal/mol) wild wild wild wild wild wild wild F wild F wild F wild F wild type / spondyl / protuberance / sudden Type/protrusion/protrusion/protrusion/protrusion/sinusoidal/protrusion/protrusion/mutation 1 variant 2 variant 3 variant 4 variant 1 variant 2 variant 3 variant 4 辔 jujube 1 variant 2 variant 3 variant 4 /x**· /x**2 */ «Fantasy CDR-Ll §lI29A30K30iiiG31Y32 0.3 1.0 9.0 1.2 0.8 1.8 0.6 3.5 1.2 0'6 39.0 39.0 3.9 36.0 0.8 2.8 ΝΑ 1.7 1.7 0.4 3.0 2.7 9.0 1.6 1.4 7.0 ΝΑ ΝΑ 1.4 0.9 16.0 5.3 0.5 0.9 2.3 15.7 ΝΑ ΝΑ 74.0 1.7 24.0 ΝΑ ΝΑ 74.0 2.6 46.0 23.0 46.0 74.0 0.5 0,9 0.9 0.7 ΝΑ 3.1 ΝΑ 2.1 ΝΑ ΝΑ 1.9 0.4 10 0.4 ΝΑ 1.1 ΝΑ 0.7 ΝΑ ΝΑ 0.3 2.8 8.4 0.8 0.20 .2 0.51.0 0.5 3.01.6 0.4 2.8 46.8 6.5 2.1 7.7 7.1 9.1 9.4 99.1 1.1 0.7 59.8 0.9 2.6 12.4 20.3 0.5 -0.6 3.5 0.1 0.6 8.8 42.7 2.3 9.9 11 7.8 8.7 0.4 2.7 1.2 0.7 0.9 1.2 150.4 1.3 24.3 1.3 152.2 45.9 2.7 0.04 • 0.2 2.4 -0.1 0.6 1.5 1.8 0.7 1.3 1.2 -0.2 3.0 -0.5 -1.1 2.2 1.4 1.3 0.6 -0. 1 3.0 1.9 2.3 CDR-L2 CDR-L3 W50 G51 S52 F53 H91 Y92 593 594 46.0 15.3 46.0 74.0 2.3 1.5 2.4 1.1 20.4 10.2 19.2 65.1 1.8 1.4 1.7 2.5 24.0 ΝΑ ΝΑ 74.0 7.3 ΝΑ ΝΑ 7.5 3.3 9.8 0.7 1.4 15.7 ΝΑ ΝΑ 36.0 4.1 ΝΑ 7.5 7.5 3.9 4.8 0.8 0.9 22.0 44.0 14.7 5.7 1.9 2.4 1.4 0.4 11.6 18.1 10.8 13.5 1.5 1.7 1.4 1.5 7.3 44.0 44.0 73-0 0.0 0.1 0.3 2.6 150.3 880.0 154.0 27.9 3.0 4.0 3.0 48.0 48.0 48.0 13.8 3.8 6.3 1.0 2.8 12.6 7.6 46.7 5.0 1.5 1.2 2.3 1.0 1.0 ΝΑ 1.7 1.7 3.0 ΝΑ ΝΑ 2.5 0.4 0.7 -0.6 -0.2 15.7 ΝΑ 3.4 3.4 1.0 ΝΑ ΝΑ 0.9 15.3 3.7 1.6 0.8 CDR-H1 S30 G31 Τ32 Υ33 ·2·4·50· 12 0 1 ναναναξ NANANA2'2 ·2·2·9·4 5 ·7·6·52· 15 0 1 NANANA2.0 AAA 8 NNN a ·3·°6 1-5·0· ο ο I2· 5 °· 3*~ΐ·9 0.00.4-0.41.2 4 ·°·
2 1 \Λ ο °-a-°L CDR-H2 9 A A 5 8 a30NN6-L -6·8·4·2·2·5 ο 1 1 1 9 1 RS0V52S53E54Y56R58 20.5 0.4 2.1 1.3 70.0 1.3 0.3 0.7 0.3 0.3 -0.7 -0.2 -0.7 -0.8 7.5 1.4 2.0 2.5 1.8 2.7 0.9 11.9 4.3 0.5 -0.1 1.5 0.9 -0.4 ΝΑ 1.0 1.2 ΝΑ ΝΑ 1.1 U 0.9 0.1 0.0 ΝΑ 0.7 0.4 ΝΑ ΝΑ 1.0 3.4 0.7 0.7 •0.3 6.9 0.7 1.6 2.3 1.3 1.2 5.8 2.8 5.3 0.6 1.0 0.6 】.0 -0.3 8.1 1.3 2.1 2.3 4.9 2.7 0.7 0.8 1.6 0.5 -0.2 •0,2 0.3 •0.4 •167- 142552.doc 201011047 W95 139.0 139.0 8.7 V96 G97 0.5 NA NA 0.8 NA NA V98 2.3 NA NA G99 2.1 NA NA F100 6.2 9.5 5.0 YlOOa 27.2 27.2 15.1 ·5-5-7'8·8·8·9 4-15-°'1 1°· 3 A A A A 9 6 °·Ν N N Να0· 2 A A A A ο 5 °-NN NN2·1 09^05^^-0^ °·2·°·1 12-1 -9-2·0·2·2 2· 1· 3· 2· 2·2 1 \Λ ο °-a-°L CDR-H2 9 AA 5 8 a30NN6-L -6·8·4·2·2·5 ο 1 1 1 9 1 RS0V52S53E54Y56R58 20.5 0.4 2.1 1.3 70.0 1.3 0.3 0.7 0.3 0.3 -0.7 -0.2 -0.7 -0.8 7.5 1.4 2.0 2.5 1.8 2.7 0.9 11.9 4.3 0.5 -0.1 1.5 0.9 -0.4 ΝΑ 1.0 1.2 ΝΑ ΝΑ 1.1 U 0.9 0.1 0.0 ΝΑ 0.7 0.4 ΝΑ ΝΑ 1.0 3.4 0.7 0.7 •0.3 6.9 0.7 1.6 2.3 1.3 1.2 5.8 2.8 5.3 0.6 1.0 0.6 】.0 -0.3 8.1 1.3 2.1 2.3 4.9 2.7 0.7 0.8 1.6 0.5 -0.2 •0,2 0.3 •0.4 •167- 142552.doc 201011047 W95 139.0 139.0 8.7 V96 G97 0.5 NA NA 0.8 NA NA V98 2.3 NA NA G99 2.1 NA NA F100 6.2 9.5 5.0 YlOOa 27.2 27.2 15.1 ·5-5-7'8·8·8·9 4-15-°'1 1°· 3 AAAA 9 6 °·Ν NN Να0· 2 AAAA ο 5 °-NN NN2·1 09^05^^-0^ °·2·°·1 12-1 -9-2·0·2·2 2· 1· 3· 2· 2·
185.3 685.7 27.2 53.7 3.1 3.9 2.0 2.4 0.2 1.0 -0.9 0.0 0.9 0.5 -0.1 -0.4 1.6 1.4 0.3 0.2 1.7 1.7 0.3 0.3 3.0 4.7 5.4 1.2 0.7 0.9 1.0 0.1 17.9 18.6 26.6 2.5 1.7 1.7 1.9 0.5 ΝΑ ==不包括突變 表9Β·就結合至HER2而言對bHl-44 Fab之獵搶丙胺酸掃描及同系 物掃描結果。 抗原選擇(H£R2) 呈現選擇(簧白L>185.3 685.7 27.2 53.7 3.1 3.9 2.0 2.4 0.2 1.0 -0.9 0.0 0.9 0.5 -0.1 -0.4 1.6 1.4 0.3 0.2 1.7 1.7 0.3 0.3 3.0 4.7 5.4 1.2 0.7 0.9 1.0 0.1 17.9 18.6 26.6 2.5 1.7 1.7 1.9 0.5 ΝΑ == Does not include the mutation table 9. In the case of binding to HER2, the bHl-44 Fab was hunted for alanine scanning and homologous scanning results. Antigen selection (H£R2) presentation choice (Spring White L>
AAGif«.«/3t*c(kcal/mol) F野生 ΔΔΟ»? MG 野生野生野生野生野生野生野生野生F野生⑽pro(tw(/h野生MG» Μϋ ΛΛΓ ΛΛρ 型/突型/突型/突型/突型/突型/突型/突型/突型/突型/突⑽* 變型丨變型2變玺3變型4變型1變型2變型3變型4變型丨突變型2突變型3變型4 1 i «丨丨…咖 «/寅》4ί3 /***4 Cdr-li CDR-L2 Q27 0.9 1.0 0.6 1.4 0.8 0.9 0.4 2.8 1.2 1.0 1.3 0.5 0.1 0.0 0.1- 0.4. - N28 1.3 0.9 1.2 U 0.6 0.9 1.0 8.4 2.0 1.0 1.2 0.1 0.4 0.0 0.1 -1-1.2 129 1.5 1.9 0.8 0.8 0.8 0.7 0.4 0.8 1.8 3,0 1.7 1.0 0.3 0.6 0.3 0.0 A30 0.3 NA HA U 0.4 NA NA 0.2 0.8 6.5 -0.2 1.1 | K30a 1.5 2.6 1.8 1.1 1.4 3.1 1.1 02 1.1 0.8 1.6 6.0 0.0 -0.1 0.3 1.1 " T30b 1.0 NA NA 0.3 0.9 NA NA 0.5 1.1 0.6 0.1 -0.3 130c 4.4 5.3 1.8 1.5 2.3 2-1 0.7 1.0 1.9 2.6 2.6 1.6 0.4 0.6 0.6 0.3 S30d 0.9 NA NA 1.0 1.7 NA NA 0.5 0.5 2.1 -0.4 0.4 G31 2.0 NA NA 2.2 2.6 NA NA 3.0 0.8 0.7 -0.1 -0.2 Y32 0.0 1.0 0.02 1.9 0.5 1.9 0.3 1.6 0.1 0.5 0.1 1.2 -1.8 -0.4 -1.6 0.1 W50 81 24.3 8.1 91.0 2.3 1.5 2.4 1.1 3.6 16.2 3.4 80.1 0.8 1.7 0.7 2.6 G51 8.4 NA NA 44.5 7.3 NA NA 7.5 1.2 5.9 0.1 1.1 S52 8.4 NA NA 6.6 4.1 NA NA 7.5 2.1 0.9 0.4 -0.1 3.1 9.8 2.0 0.4 1.9 2.4 0.4 1.6 40 0.3 0.8 0.2 CDR-L3 H91 1.7 58.0 58.0 Y92 22.5 90.0 90.0 S93 1.5 NA NA S94 30.3 NA NA 5 18 3 5· 4 1 3 A A °·6·ΝΝ 5 o’·8'0'0 0·3·3'1' 0.3 2.6 34.0 1160.0 203.0 2.1 2.1 4.2 3.1 0.4 1.0 2.8 5.9 14.2 87.6 1.5 1.1 1.6 2.7 0.2 NA 2.5 0.5 1.1 -0.4 0.1 NA 0.9 29.7 8.1 2.0 1.2 CDR-H1 S30 1.3 NA NA G31 1.5 NA NA T32 0.6 NA NA Y33 150.0 150.0 150.0 ·0·3·5·7 13 15 ·2·2·9'4 NANANA2'0 A A A 8 N N N a -0·3·704· 75.0 0.8 0.0 -0.1 0.7 0.1 -0.2 2.6 -0.2 0.6 179.3 2.5 2.8 2.6 3.1 0.5 cAAGif«.«/3t*c(kcal/mol) F wild ΔΔΟ»? MG wild wild wild wild wild wild wild F wild (10) pro (tw (/h wild MG» Μϋ ΛΛ ΛΛρ type / sudden type / protruding type / sudden Type/protrusion/protrusion/protrusion/protrusion/protrusion/protrusion/protrusion (10)* Variant 丨 variant 2 玺 变 3 variant 4 variant 1 variant 2 variant 3 variant 4 variant 丨 mutant 2 mutant 3 variant 4 1 i «丨丨...咖«/寅》4ί3 /***4 Cdr-li CDR-L2 Q27 0.9 1.0 0.6 1.4 0.8 0.9 0.4 2.8 1.2 1.0 1.3 0.5 0.1 0.0 0.1- 0.4. - N28 1.3 0.9 1.2 U 0.6 0.9 1.0 8.4 2.0 1.0 1.2 0.1 0.4 0.0 0.1 -1-1.2 129 1.5 1.9 0.8 0.8 0.8 0.7 0.4 0.8 1.8 3,0 1.7 1.0 0.3 0.6 0.3 0.0 A30 0.3 NA HA U 0.4 NA NA 0.2 0.8 6.5 -0.2 1.1 | K30a 1.5 2.6 1.8 1.1 1.4 3.1 1.1 02 1.1 0.8 1.6 6.0 0.0 -0.1 0.3 1.1 " T30b 1.0 NA NA 0.3 0.9 NA NA 0.5 1.1 0.6 0.1 -0.3 130c 4.4 5.3 1.8 1.5 2.3 2-1 0.7 1.0 1.9 2.6 2.6 1.6 0.4 0.6 0.6 0.3 S30d 0.9 NA NA 1.0 1.7 NA NA 0.5 0.5 2.1 -0.4 0.4 G31 2.0 NA NA 2.2 2.6 NA NA 3.0 0.8 0.7 -0.1 -0.2 Y32 0.0 1.0 0.02 1.9 0.5 1.9 0.3 1.6 0.1 0.5 0.1 1.2 -1.8 -0.4 -1.6 0.1 W50 81 24.3 8.1 91.0 2.3 1.5 2.4 1.1 3.6 16.2 3.4 80.1 0.8 1.7 0.7 2.6 G51 8.4 NA NA 44.5 7.3 NA NA 7.5 1.2 5.9 0.1 1.1 S52 8.4 NA NA 6.6 4.1 NA NA 7.5 2.1 0.9 0.4 0.1 3.1 9.8 2.0 0.4 1.9 2.4 0.4 1.6 40 0.3 0.8 0.2 CDR-L3 H91 1.7 58.0 58.0 Y92 22.5 90.0 90.0 S93 1.5 NA NA S94 30.3 NA NA 5 18 3 5· 4 1 3 AA °·6·ΝΝ 5 o'· 8'0'0 0·3·3'1' 0.3 2.6 34.0 1160.0 203.0 2.1 2.1 4.2 3.1 0.4 1.0 2.8 5.9 14.2 87.6 1.5 1.1 1.6 2.7 0.2 NA 2.5 0.5 1.1 -0.4 0.1 NA 0.9 29.7 8.1 2.0 1.2 CDR-H1 S30 1.3 NA NA G31 1.5 NA NA T32 0.6 NA NA Y33 150.0 150.0 150.0 ·0·3·5·7 13 15 ·2·2·9'4 NANANA2'0 AAA 8 NNN a -0·3·704· 75.0 0.8 0.0 -0.1 0.7 0.1 -0.2 2.6 -0.2 0.6 179.3 2.5 2.8 2.6 3.1 0.5 c
0 2 3 4 6 8 5 5^^55 R Y ^ £ Y R ( ^ 0 7 50·0·0·29·3· 1 11 n 11 150.0 150.0 134.0 2.1 1.5 0.9 1.2 2.0 NA NA 1.1 1.2 NA NA 2.2 0.4 147.0 147.0 0.9 1.6 142.0 142.0 66.0 2.1 3 3 2·2·0 2 3 4 6 8 5 5^^55 RY ^ £ YR ( ^ 0 7 50·0·0·29·3· 1 11 n 11 150.0 150.0 134.0 2.1 1.5 0.9 1.2 2.0 NA NA 1.1 1.2 NA NA 2.2 0.4 147.0 147.0 0.9 1.6 142.0 142.0 66.0 2.1 3 3 2·2·
'2-NN 7 2 2 a·5·9·411 7 0 0 3 3 1 J cj 2-7 12-1 1 I2· °·0·8^认·3·9 7 1 N- x^- 1 4 J13.6 2.1 100.5 2.5 2.8 0.5 2.7 0.6 0.5 0.4 -0.4 -0.3 -0.4 •0.5 1.0 -0.1 0.0 2.2 0.7 0.5 64.1 112.3 0.7 2.0 2.5 2.8 -0.2 61.4 28.8 24.8 1.4 2.4 2.0 1.9 W95 150.0 150.0 150.0 134.0 0.8 V96 0.9 NA NA 1.2 2.1 G97 1.8 NA NA 6.9 0.9 CDR-H3 V9H 0.6 NA NA 1.5 1.5 G99 6.5 NA NA 21.3 1.2 F100 145.0 145.0 29.0 133.0 2.0 YlOOa 149.0 149.0 149.0 6.9 1.5 -0 o. 1 o g·4·0·4·218 2 0 2 0 5 7 9 5·5·78·88·9 4·1·5·°·1 1°· 3 A A A A 9 I a N N N N a a 740.0 470.0 29.6 3.1 3.9 3.6 2.0 0.8 -0.5 •0.1 1.2 0.4 0.1 1.8 -0.5 0.3 12.0 1.0 1.5 71.1 31.3 73.0 2.5 2.5 2.0 2.5 101.9 262.7 7.8 2.7 2.7 3.3 1,2 ΝΑ =不包括突變。 142552.doc 168· 201011047 ·· % 表10. VEGF及HER2之結構性及功能性互補位。 僅VEGF 僅HER2 共用 (me邂邾趄赛皱 LC-S30b HC-Y56 LC-Y32 LC-DOc HC-R58 LC-W50 LC-S30d LC-Y53 LC-G31 LC-H91 LC-T93 LC-Y92 LC-T94 HC-Y33 HC-R50 HC-W95 HC-G99 HC-Y100a LC-I29 LC-T94 LC-W50 LC-S30b HC-Y33 HC-W95 LC-S30d HC-R50 LC-G31 HC-Y56 LC-Y32 HC-R58 LC-G51 HC-G99 LC-H91 HC-F100 LC-Y92 HC-YlOOa LC-I29 HC-Y33 LC-H91 LC-T30b HC-R50 LC-S94 LC-S30d HC-Y56 HC-W95 LC-G31 HC-R58 LC-Y32 HC-F100 LC-W50 LC-F53 LC-Y92 HC-YlOOa HC-YlOOa 表 11· bHl/VEGF、bHl/HER2及Herceptin®/HER2複合物之結合 界面的極性及尺寸。 bHl Fab/VEGF結合界面 bHl Fab/HER2結合界面 接赛汀Fab/HER2結合界面 bHl VEGF 組合者百分比(%) bHl HER2 組合者百分比 赭赛汀 HER2 組合者百分比(%) 極性 311 295 607 40% 308 282 591 37% 307 308 614 40% 疏水性 438 462 900 60% 470 518 988 63% 441 469 910 60% 總和 749 757 1506 779 800 1579 747 777 1524 HER2/VEGF雙重特異性bHl-44抗想維持Herceptin®抗 體之HER2結合動力學 142552.doc -169- 201011047 進行表面電漿共振分析以研究bHl及其Fab變異體與固定 化VEGF或HER2之結合動力學(表12)。使用BIAcore 3000 進行基於3卩11之檢定。以允許50-150 101範圍内之1111^乂的 密度將VEGF109及HER2胞外域固定於CM5晶片上。以30 μΐ/min注射Fab於具有0.05% Tween 20之PBS中的連續稀釋 液。藉由減去空白流式細胞之反應且藉由針對緩衝效應作 校正來校正結合反應。使用1:1朗繆爾擬合模型來估算 ka(締合速率)及kd(解離速率)。由ka與kd之比率求出KD值。 bHl Fab/VEGF相互作用之特徵在於相對較高之締合速 率(kon=3.7xl04)及快速的解離速率(kcff=0.013),此產生 300 nM之中等KD。bHl/HER2相互作用之親和性(Kd=26 nM,kon=9.6xl04,koff=2.4xl0·3)比具有較慢締合速率及 較快解離速率之Herceptin㊣/HER2相互作用(Kd = 0.5 nM,kon=7.1xl05 ’ koff=3.5xl(T4)低 52倍。親和性改良型 bHl變異體(bHl-81及bHl-44)展示VEGF及HER2相互作用 之締合速率及解離速率有所改良。高親和性純系bHl-44 以類似於Herceptin®之親和性結合HER2(KD = 0.2 nM,表 12)。 表12展示使用BIAcore於30°C下經由表面電漿共振量測 所測定的bHl變異體及Herceptin®抗體之動力學概況。 在該等實驗中,使Fab結合至固定化VEGF或HER2,且使 用1:1朗繆爾結合擬合模型測定締合速率(ka)、解離速率 (kd)及解離常數(KD)。bHl-44抗體具有與Herceptin®抗體 類似之動力學概況及對HER2之親和性。喪失與VEGF或 142552.doc -170- 201011047 HER2結合之兩種雙重突變體(bHl-44 I29A + Y32A及 bHl-44 R50A + R58A)保持動力學概況及對其他抗原之 親和性。 表12· bHl變異體及Herceptin®抗體之動力學概況。'2-NN 7 2 2 a·5·9·411 7 0 0 3 3 1 J cj 2-7 12-1 1 I2· °·0·8^ recognition·3·9 7 1 N- x^- 1 4 J13.6 2.1 100.5 2.5 2.8 0.5 2.7 0.6 0.5 0.4 -0.4 -0.3 -0.4 •0.5 1.0 -0.1 0.0 2.2 0.7 0.5 64.1 112.3 0.7 2.0 2.5 2.8 -0.2 61.4 28.8 24.8 1.4 2.4 2.0 1.9 W95 150.0 150.0 150.0 134.0 0.8 V96 0.9 NA NA 1.2 2.1 G97 1.8 NA NA 6.9 0.9 CDR-H3 V9H 0.6 NA NA 1.5 1.5 G99 6.5 NA NA 21.3 1.2 F100 145.0 145.0 29.0 133.0 2.0 YlOOa 149.0 149.0 149.0 6.9 1.5 -0 o. 1 og·4·0·4 ·218 2 0 2 0 5 7 9 5·5·78·88·9 4·1·5·°·1 1°· 3 AAAA 9 I a NNNN aa 740.0 470.0 29.6 3.1 3.9 3.6 2.0 0.8 -0.5 •0.1 1.2 0.4 0.1 1.8 -0.5 0.3 12.0 1.0 1.5 71.1 31.3 73.0 2.5 2.5 2.0 2.5 101.9 262.7 7.8 2.7 2.7 3.3 1,2 ΝΑ = No mutation is included. 142552.doc 168· 201011047 ·· % Table 10. Structural and functional complements of VEGF and HER2. Only VEGF is shared only by HER2 (me 邂邾趄 皱 LC-S30b HC-Y56 LC-Y32 LC-DOc HC-R58 LC-W50 LC-S30d LC-Y53 LC-G31 LC-H91 LC-T93 LC-Y92 LC- T94 HC-Y33 HC-R50 HC-W95 HC-G99 HC-Y100a LC-I29 LC-T94 LC-W50 LC-S30b HC-Y33 HC-W95 LC-S30d HC-R50 LC-G31 HC-Y56 LC-Y32 HC -R58 LC-G51 HC-G99 LC-H91 HC-F100 LC-Y92 HC-YlOOa LC-I29 HC-Y33 LC-H91 LC-T30b HC-R50 LC-S94 LC-S30d HC-Y56 HC-W95 LC-G31 HC-R58 LC-Y32 HC-F100 LC-W50 LC-F53 LC-Y92 HC-YlOOa HC-YlOOa Table 11 · Polarity and size of the binding interface of bHl/VEGF, bHl/HER2 and Herceptin®/HER2 complexes bHl Fab/VEGF binding interface bHl Fab/HER2 binding interface cytidine Fab/HER2 binding interface bHl VEGF combination percentage (%) bHl HER2 combination percentage 赭 赭 HER HER HER HER HER HER HER HER HER HER HER HER HER 311 311 311 311 311 311 311 311 311 295 607 40% 308 282 591 37% 307 308 614 40% Hydrophobic 438 462 900 60% 470 518 988 63% 441 469 910 60% Total 749 757 1506 779 800 1579 747 777 1524 HER2/VEGF dual specific bHl-44 anti-Herceptin® antibody HER2 binding kinetics 142552.doc -169 - 201011047 Perform surface plasmon resonance analysis to study the binding kinetics of bHl and its Fab variants to immobilized VEGF or HER2 (Table 12). Perform a 3卩11 based assay using BIAcore 3000 to allow for a range of 50-150 101 Density of 1111 乂 VEGF109 and HER2 extracellular domains were immobilized on CM5 wafers. Serial dilutions of Fab in PBS with 0.05% Tween 20 were injected at 30 μΐ/min. The binding reaction was corrected by subtracting the reaction of the blank flow cells and by correcting for the buffer effect. The 1:1 Langmuir fitting model was used to estimate ka (association rate) and kd (dissociation rate). The KD value is obtained from the ratio of ka to kd. The bHl Fab/VEGF interaction is characterized by a relatively high association rate (kon = 3.7 x 104) and a fast dissociation rate (kcff = 0.013), which yields a medium nD of 300 nM. The affinity of the bHl/HER2 interaction (Kd=26 nM, kon=9.6x104, koff=2.4xl·3) is a Herceptin positive/HER2 interaction with a slower association rate and a faster dissociation rate (Kd = 0.5 nM) , kon=7.1xl05 'koff=3.5xl(T4) is 52 times lower. The affinity-modified bHl variants (bHl-81 and bHl-44) show an improved association rate and dissociation rate of VEGF and HER2 interactions. The high affinity pure line bHl-44 binds to HER2 with affinity similar to Herceptin® (KD = 0.2 nM, Table 12). Table 12 shows bHl variants determined by surface plasmon resonance measurement at 30 °C using BIAcore And the kinetic profile of the Herceptin® antibody. In these experiments, the Fab was bound to immobilized VEGF or HER2 and the association rate (ka) and dissociation rate (kd) were determined using a 1:1 Langmuir binding fit model. And dissociation constant (KD). The bHl-44 antibody has a similar kinetic profile and affinity for HER2 as the Herceptin® antibody. Loss of two double mutants binding to VEGF or 142552.doc-170-201011047 HER2 (bHl- 44 I29A + Y32A and bHl-44 R50A + R58A) maintain kinetic profile and affinity for other antigens. Table 12. Dynamics of bHl variants and Herceptin® antibodies.
VEGF1M HER2 ECD ka(l/Ms) kd(l/s) Kn(nM) ka (1/Ms) kd(l/s) K〇(nM) Herceptin® Fab - . NB 7.1E+05 3.5E-04 0.5 +A 0.06 Herceptin®(R50A) Fab - - NB 2.7E+04 2.0E-03 74 Herceptin®(R5 8 A) Fab - - NB 5.9E+04 7.3E-04 12 Herceptin® (R50A+R58A) NB NB Fab bHl Fab 3.7E+04 0.013 300 +/- 87 9.6E+04 2.4E-03 26 +/- 28 bHl-81 1.2E+05 0.007 58+/-12 2.2E+05 1.4E-03 6+/-0.6 bHl-44 Fab 4.0E+05 0.001 3+/-0.3 3.7E+05 8.0E-05 0.2 +/- 0.07 bHl-44(Y32A)Fab bHl-44(I29A+Y32A) - - 弱 6.2E+05 3.5E-05 0.1 Fab - NB 4.2E+05 8.3E-05 0.2 +/- 0.07 bHl-44(R50A+R58A) Fab 3.5E+05 0.001 3+/-0.7 - - NB NB =無可憤測之結合。 雙重特異性抗體以類似熱力學特性與HER2及VEGF相互作用 亦使用等溫滴定量熱法(isothermal titration calorimetry, ITC)測定bHl Fab變異體與兩個抗原VEGF(VEGF之受體結 合域’ VEGF8-i〇9)及HER2胞外域(ECD)之間的相互作用之 焓(ΔΗ)及熵(AS)變化(圖59A-F,圖60,表13)。 如(Starovasnik等人’ 1999)所述,用VP-ITC滴定量熱計 (Microcal Inc.)進行對Fab與人類VEGF109及HER2胞外域之 間的相互作用之微量熱法量測。使蛋白質溶液廣泛透析至 磷酸鹽缓衝鹽水中。在同一容器中透析抗原及Fab以最小 化由於緩衝液組成差異而引起之混合熱效應。將濃度為 100-220 μΜ之Fab以10-22 μΜ之濃度滴定至抗原溶液 • 171 - 142552.doc 201011047 (HER2-ECD或VEGF1()9)中。此濃度之抗原為精確的焓量測 所需,但排除在結合親和性高之情況下對KD之測定。進行 15或20次注射以獲得2倍過量之抗體。測定反應熱,減去 Fab稀釋熱,且計算ΔΗ。 根據下式使用藉由表面電漿共振所測定之解離常數 (KD)(表12)來計算結合自由能(AG): AG=RT Ιη(ΚΌ) 根據下式計算締合後之熵變化(AS): AS=(AH-AG)/T,其中 T為溫度(K)。 為測定ACp,如上文所述在20至37°C範圍内之不同溫度 下進行微量熱法量測。藉由經由將ΔΗ作為溫度之函數作 圖進行線性回歸而測出ACp(圖62)。 首先表徵雙重特異性抗體(bHl)與其兩個抗原(VEGF及 HER2)中之任一者的相互作用。bHl與VEGF及HER2之結 合展現類似之熱力學特性(表13)。於30°C下在PBS(pH 7.4) 中所量測之兩種相互作用係放熱的(對於VEGF及HER2而 言分別為ΔΗ=-2.4及-2.4 kcal/mol,表13,圖60),伴隨高 度有利的有助於結合能之熵變化(對於VEGF及HER2而言 分別為-TAS=-6.6及-7.9 kcal/mol,表 13,圖 60)。 表13展示以kcal/mol計之AG(結合自由能)、AS(熵變化) 及ΔΗ(焓變化)。所示親和性係於至少兩個獨立的實驗中藉 由BIAcore於30°C下使用動力學分析來量測。ΔΗ係使用 ITC來量測,且其表示兩次或三次獨立量測之平均值後接 標準偏差。如上所述計算AG及AS。 142552.doc -172- 201011047 高親和性變異體bHl-81及bHl-44展示與bHl類似之熱力 學概況。其與VEGF及HER2之相互作用的特徵亦在於有利 之焓及熵(表13,圖60)。對於VEGF相互作用而言,親和 性改良係與明顯更為有利之焓變化(在30°C下,對於 bHl-44 而言 ΔΗ=-7·1 kcal/mol,相對地,bHl 為-2.4 kcal/mol)及略微較不具正性之熵變化(在30°C下,對於 bHl-44 而言-TAS = -6.6,相對地,bHl 為-4·7,表 13,圖 60)相關聯。改良的對HER2之親和性亦與更為有利之焓 ❹· 變化(在30°C下,ΔΗ=-5·3相對於-2.4 kcal/mo卜表13, 圖60)相關聯。 表13. bHl變異體及Herceptin®抗體之抗原結合親和性及熱 . 力學。VEGF1M HER2 ECD ka(l/Ms) kd(l/s) Kn(nM) ka (1/Ms) kd(l/s) K〇(nM) Herceptin® Fab - . NB 7.1E+05 3.5E-04 0.5 +A 0.06 Herceptin®(R50A) Fab - - NB 2.7E+04 2.0E-03 74 Herceptin®(R5 8 A) Fab - - NB 5.9E+04 7.3E-04 12 Herceptin® (R50A+R58A) NB NB Fab bHl Fab 3.7E+04 0.013 300 +/- 87 9.6E+04 2.4E-03 26 +/- 28 bHl-81 1.2E+05 0.007 58+/-12 2.2E+05 1.4E-03 6+ /-0.6 bHl-44 Fab 4.0E+05 0.001 3+/-0.3 3.7E+05 8.0E-05 0.2 +/- 0.07 bHl-44(Y32A)Fab bHl-44(I29A+Y32A) - - Weak 6.2E +05 3.5E-05 0.1 Fab - NB 4.2E+05 8.3E-05 0.2 +/- 0.07 bHl-44 (R50A+R58A) Fab 3.5E+05 0.001 3+/-0.7 - - NB NB = no anger The combination of measurements. Dual-specific antibodies interact with HER2 and VEGF with similar thermodynamic properties. Isothermal titration calorimetry (ITC) was used to determine bH1 Fab variants and two antigens VEGF (receptor binding domain of VEGF' VEGF8-i焓9) and HER2 extracellular domain (ECD) interactions between 焓 (ΔΗ) and entropy (AS) changes (Fig. 59A-F, Fig. 60, Table 13). Microcalorimetric measurements of the interaction between Fab and human VEGF109 and the extracellular domain of HER2 were performed using a VP-ITC titration calorimeter (Microcal Inc.) as described (Starovasnik et al., 1999). The protein solution was extensively dialyzed into phosphate buffered saline. The antigen and Fab are dialyzed in the same container to minimize the mixing heat effect due to differences in buffer composition. Fabs at a concentration of 100-220 μM are titrated to an antigen solution at a concentration of 10-22 μM • 171 - 142552.doc 201011047 (HER2-ECD or VEGF1()9). This concentration of antigen is required for accurate sputum measurement, but excludes the determination of KD with high binding affinity. 15 or 20 injections were performed to obtain a 2-fold excess of antibody. The heat of reaction was measured, the heat of dilution of Fab was subtracted, and ΔΗ was calculated. The binding free energy (AG) was calculated according to the dissociation constant (KD) determined by surface plasma resonance (Table 12) according to the following formula: AG=RT Ιη(ΚΌ) The entropy change after association was calculated according to the following formula (AS) ): AS = (AH - AG) / T, where T is the temperature (K). For the determination of ACp, microcalorimetry was carried out at different temperatures ranging from 20 to 37 °C as described above. ACp was measured by linear regression by plotting ΔΗ as a function of temperature (Fig. 62). The interaction of the dual specific antibody (bHl) with either of its two antigens (VEGF and HER2) is first characterized. The combination of bHl with VEGF and HER2 exhibited similar thermodynamic properties (Table 13). The two interactions measured in PBS (pH 7.4) at 30 °C were exothermic (ΔΗ=-2.4 and -2.4 kcal/mol for VEGF and HER2, respectively, Table 13, Figure 60), It is highly advantageous to contribute to the entropy change of binding energy (-TAS = -6.6 and -7.9 kcal/mol for VEGF and HER2, respectively, Table 13, Figure 60). Table 13 shows AG (binding free energy), AS (entropy change), and ΔΗ (焓 change) in kcal/mol. The affinity shown is measured by kinetic analysis at 30 °C by BIAcore in at least two independent experiments. The ΔΗ system is measured using ITC and it represents the average of two or three independent measurements followed by the standard deviation. Calculate AG and AS as described above. 142552.doc -172- 201011047 The high-affinity variants bHl-81 and bHl-44 display a thermodynamic profile similar to bHl. Its interaction with VEGF and HER2 is also characterized by advantages and entropy (Table 13, Figure 60). For the VEGF interaction, the affinity improvement system is significantly more favorable for 焓 change (at 30 ° C, ΔΗ = -7·1 kcal/mol for bHl-44, and bHl is -2.4 kcal for bHl /mol) and a slightly less positive entropy change (at 30 °C, -TAS = -6.6 for bHl-44, relatively bHl is -4·7, Table 13, Figure 60). The improved affinity for HER2 is also associated with a more favorable ❹ 变化 change (at 30 ° C, ΔΗ = -5 · 3 vs. -2.4 kcal / mo, Table 13, Figure 60). Table 13. Antigen binding affinity and heat of bHl variants and Herceptin® antibodies. Mechanics.
VEGF,〇9_ _HER2-ECD (nM) AG ΔΗ -TAS (nM) AG AH -TAS Herceptin® - - - 0.5 -12.9+/-0.06 -13.6+/- 0.2 -0.3+/-0.2 bHl 300 -9.0+/-0.2 -2.4+/-0.7 -6.6+/-0.7 26 -10.5+/- 0.4 -2.4+/-0.5 -7.9+/-0.6 bHl-81 58 -10+/-0.1 -6.2+/-0.1 -3.8+/-0.2 6 -11.4+/-0.05 -3.8 -7.6 bHl-44 3 -11.8+/-0.07 -7.1+/-0.3 -4.7+/-0.3 0.2 -13.5/- 0.3 -5.3/-0.4 -8.1+/-0.5 bHl-44 (LC-I29A/Y32A) - - - - 0.2 -13.5/-0.3 -6.4/-0.5 -7.6+/-0.6 bHl-44 (HCR50A/R58A) 4 -11.6+/- 0.1 -7.7 -3.9 - - - - bHl-44及Herceptin®以獨特熱力學與HER2相互作用 與雙重特異性抗體相反,HER2/Herceptin®相互作用之 特徵在於大的有利之給變化(ΔΗ=-13.6 kcal/mol),而無任 何顯著的熵變化(-TAS=-0.3 kcal/mol,圖60,表 13)(Kelley 等人,1992)。儘管bHl-44以與Herceptin®類似之親和性與 HER2相互作用,但結合自由能係由較大之熵分量(-TAS = -8.1 kcal/mol,30°C)及較小之始'分量kcal/mol, 142552.doc -173- 201011047 30°C)組成。獨特之熱力學特性同Herceptin®與bHl-44之間 的HER2結合特徵之諸多類似性形成對比,該等類似性包 括親和性、動力學及能量熱點之諸多殘基。儘管對於 HER2貢獻總結合能之10%以上的Herceptin®之熱點殘基類 似於bHl及bHl-44之彼等殘基,但仍存在一些明顯差異。 表14顯示藉由丙胺酸掃描突變誘發就HER2結合而言所 測定之bHl、bHl-44及Herceptin®抗體熱點。如Kelley等 人,1993中所述進行突變誘發。表14中之數字表示當殘基 突變為丙胺酸時結合自由能之變化(AAG野生型-突*型)。表14 ©© 中之熱點殘基加有陰影且係定義為大於或等於總結合自由 能(AG)之 10% 的 AAG。 在 bHl 之序歹ij 中,殘基 LC-Thr94、HC-Tyr33、HC-Asp98係保守的,但在HER2結合中具有不同功能(表14, 圖61)。因此,募集VEGF結合之Herceptin®的抗原結合位 點之突變似乎使影響與HER2之相互作用的抗原結合位點 產生一些根本性變化。雙重特異性抗體藉由利用對HER2 產生與Herceptin®等高之親和性的不同HER2識別策略來 適應引入之突變。有趣的是,注意到除bHl-44之LC-Ser94以外,使對HER2之親和性與bHl相比改良100倍以 上之突變並非結合熱點之部分,而似乎使現有之相互作 用最優化。 雙重特異性相互作用中之大的負熱容量 為進一步理解促進雙重特異性相互作用之共同能量學及 其如何有別於單特異性母體Herceptin®之能量學,進行一 142552.doc -174- 201011047 系列實驗以研究以下三種Fab/抗原相互作用:bHl-44與 VEGF或 HER2及 Herceptin®與 HER2。藉由在 20°C 至 37°C 範 圍内之多個溫度下測定結合焓(ΔΗ)來量測雙重特異性相互 作用之熱容量(ΔΤ=17°(:,圖62,表15)。熱容量(ACp)係ΔΗ 及溫度(T)之函數且係以以下等式來說明: ΔΟρ=δ(ΑΗ)/δΤ。 藉由線性回歸根據ΑΗ之溫度依賴性斜率來估算ACp(圖 62,表15)。對於與VEGF之相互作用而言,bHl-44之ACp •❹ 經測定為-400 cal/molK,且對於與HER2之相互作用而言 為-440 cal/molK。如先前(Kauzmann,1959)所述,大的負 熱容量指示疏水性效應之重要性,此與兩種複合物中之結 構界面的疏水性質相一致(表11)。Herceptin®/HER2之 △ Cp(先前以類似溫度間隔經測定為_370 cal/molK(Kelley等 人,1992))小於bHl-44/HER2之ACp,但仍指示疏水性效應 在HER2結合中之重要作用。VEGF, 〇9_ _HER2-ECD (nM) AG ΔΗ -TAS (nM) AG AH -TAS Herceptin® - - - 0.5 -12.9+/-0.06 -13.6+/- 0.2 -0.3+/-0.2 bHl 300 -9.0+ /-0.2 -2.4+/-0.7 -6.6+/-0.7 26 -10.5+/- 0.4 -2.4+/-0.5 -7.9+/-0.6 bHl-81 58 -10+/-0.1 -6.2+/-0.1 -3.8+/-0.2 6 -11.4+/-0.05 -3.8 -7.6 bHl-44 3 -11.8+/-0.07 -7.1+/-0.3 -4.7+/-0.3 0.2 -13.5/- 0.3 -5.3/-0.4 -8.1+/-0.5 bHl-44 (LC-I29A/Y32A) - - - - 0.2 -13.5/-0.3 -6.4/-0.5 -7.6+/-0.6 bHl-44 (HCR50A/R58A) 4 -11.6+/ - 0.1 -7.7 -3.9 - - - - bHl-44 and Herceptin® interact with HER2 in a unique thermodynamics. In contrast to dual-specific antibodies, the HER2/Herceptin® interaction is characterized by a large beneficial change (ΔΗ = -13.6 Kcal/mol) without any significant entropy change (-TAS = -0.3 kcal/mol, Figure 60, Table 13) (Kelley et al., 1992). Although bHl-44 interacts with HER2 with a similar affinity to Herceptin®, the binding free energy is dominated by a larger entropy component (-TAS = -8.1 kcal/mol, 30 °C) and a smaller initial component kcal /mol, 142552.doc -173- 201011047 30 °C) composition. The unique thermodynamic properties are in contrast to the many similarities in the HER2 binding characteristics between Herceptin® and bHl-44, which include many residues in affinity, kinetics and energy hotspots. Although more than 10% of the total binding energy for HER2 contributes to the residues of Herceptin®, which are similar to those of bHl and bHl-44, there are still some significant differences. Table 14 shows the bHl, bHl-44 and Herceptin® antibody hot spots measured for HER2 binding by alanine scanning mutation. Mutation induction was performed as described in Kelley et al., 1993. The numbers in Table 14 indicate changes in binding free energy when the residue is mutated to alanine (AAG wild-type*). The hotspot residues in Table 14 ©© are shaded and defined as AAGs greater than or equal to 10% of the total binding free energy (AG). In the sequence b ij of bHl, the residues LC-Thr94, HC-Tyr33, HC-Asp98 are conserved, but have different functions in HER2 binding (Table 14, Figure 61). Thus, mutations in the antigen binding site of Herceptin® that recruits VEGF binding appear to cause some fundamental changes in the antigen binding site that affects the interaction with HER2. Dual-specific antibodies adapt to introduced mutations by exploiting different HER2 recognition strategies that produce HER2 affinity for Herceptin®. Interestingly, it was noted that in addition to LC-Ser94 of bHl-44, mutations that improved the affinity for HER2 by more than 100-fold compared to bHl were not part of the hotspot and seemed to optimize existing interactions. The large negative heat capacity in the dual-specific interaction is a further understanding of the common energetics that promote dual-specific interactions and how they differ from the energetics of the monospecific parent Herceptin®, a 142552.doc -174- 201011047 series Experiments were conducted to study the following three Fab/antigen interactions: bHl-44 with VEGF or HER2 and Herceptin® and HER2. The heat capacity of the dual specific interaction was measured by measuring the bound enthalpy (ΔΗ) at a plurality of temperatures ranging from 20 ° C to 37 ° C (ΔΤ = 17° (:, Fig. 62, Table 15). ACp) is a function of ΔΗ and temperature (T) and is expressed by the following equation: ΔΟρ=δ(ΑΗ)/δΤ. ACp is estimated by linear regression according to the temperature-dependent slope of ΑΗ (Fig. 62, Table 15) For interaction with VEGF, the ACp • b of bHl-44 was determined to be -400 cal/mol K and for the interaction with HER2 was -440 cal/mol K. As previously (Kauzmann, 1959) As stated, the large negative heat capacity indicates the importance of the hydrophobic effect, which is consistent with the hydrophobic nature of the structural interface in the two complexes (Table 11). The Δ Cp of Herceptin®/HER2 (previously measured at similar temperature intervals) _370 cal/mol K (Kelley et al., 1992)) is less than the ACp of bHl-44/HER2, but still indicates an important role for the hydrophobic effect in HER2 binding.
結合自由能之總熵變化(AS)為以下三種來源之熵變化的 總和(Murphy等人,1994):與結合表面之去溶劑化相關聯 之熵變化(ASsolv)、來自轉動及平動自由度損失之熵變化 (△SRT)及由於相互作用分子之構型及構形動力學變化引起 之熵變化(ASconf)。 (1) AStot=ASs〇lv+ASrt+ASc〇nf 一般地,僅ASsolv為正的’而ASrt及ASconf二者均為負 的。對於兩個分子之缔合而言,專有性(cratic)熵術語ASrt 可如(Murphy等人,1994)所述經估算為-8 cal/Kmol。由於 142552.doc -175· 201011047 非極性表面區域之包埋,因此,可假定AS SOLV為疏水性效 應所支配,且可以ACp之函數來說明: (2) ASsolv= ΔΟρ 1η(Τ/Τ*) > Τ*=385 Κ △ Sc〇NF因此可如下估算· (3) ASconf=AStot - ASrt - ASsolv 根據等式(3),對於bHl-44/VEGF而言ASsolv經估算為96 calmoPK·1,對於bHl-44/HER2而言為 105 calmoPK1,且 對於Herceptin®/HER2 而言為 89 calmor1!^1(表 15)。此轉換 成AS CONF * 對於bHl-44/VEGF而言為-72 calmoPK·1,對於 bHl-44/HER2而言為-70 calmol^K-1,且對於Herceptin®/HER2 而言為-80 calmoPK·1(表 15)。 為檢驗雙重特異性Fab與其母體Herceptin®相比之總體 結構穩定性,使用差示掃描熱量測定(DSC)進行熱變性實 驗。於來自Microcal Inc之差示掃描量熱計上進行熱變性 實驗。針對10 mM乙酸納(pH 5)、1 50 mM氣化納透析 Fab。將溶液調整至0·5 mg/ml之濃度且以l°C/min之速率加 熱至95°C。對熔融曲線作基線校準且作校正。使用由製造 商提供之軟體測定熔融溫度(TM)。如所預期,無Fab展示 可逆之熱變性概況(Kelley等人,1992)(資料未顯示)。雙重 特異性變異體之TM(對於bHl、bHl-81及bHl_44而言分別 為 77.2°C、75.6°C、74.3°C,表 16)略微低於 Herceptin® 之 TM(82.5°C ),但係高的且在對於其他治療性抗體所報導之 Tm範圍内(Garber及 Demarest,2007) 0 對單獨VEGF或HER2具高親和性之bHl變異體的結合動 142552.doc -176- 201011047 力學及熱力學有趣的是,雙重特異性抗體自共用 VEGF/HER2結合位點之完全獨特的區域得到其大部分之結 合能。該等資料顯示可在不影響剩餘結合特異性的情況下 選擇性地破壞雙重特異性抗體之VEGF或HER2結合功能。 結構研究指示,對於VEGF及HER2而言bHl上之結構互補 位顯著重疊,但bHl及bHl-44之獵搶丙胺酸突變誘發表明 VEGF及HER2相互作用係由具有很少重疊之兩組獨特CDR 殘基所介導(圖54及57 ’表9A、9B及10)。bHl及bHl-44之 籲鲁 獵搶丙胺酸掃描指示,一些CDR殘基僅對於結合VEGF或 HER2而言係重要的(圖54及57,表9A、9B及10) ’包括LC-Ile29、LC-Tyr32(其對於VEGF結合係重要的)及HC-- Arg50、HC-Arg58(對於HER2結合而言)(圖54及57,表9及The total entropy change (AS) of the combined free energy is the sum of the entropy changes of the following three sources (Murphy et al., 1994): the entropy change (ASsolv) associated with the desolvation of the binding surface, from the rotational and translational degrees of freedom Entropy change in loss (ΔSRT) and entropy change (ASconf) due to changes in the configuration and configuration dynamics of the interacting molecules. (1) AStot=ASs〇lv+ASrt+ASc〇nf Generally, only ASsolv is positive and both ASrt and ASconf are negative. For the association of two molecules, the term "cratic" entropy ASrt can be estimated to be -8 cal/Kmol as described (Murphy et al., 1994). Since 142552.doc -175· 201011047 is embedded in the non-polar surface area, it can be assumed that AS SOLV is dominated by the hydrophobic effect and can be explained by the function of ACp: (2) ASsolv= ΔΟρ 1η(Τ/Τ*) > Τ*=385 Κ △ Sc〇NF can therefore be estimated as follows. (3) ASconf=AStot - ASrt - ASsolv According to equation (3), ASsolv is estimated to be 96 calmoPK·1 for bHl-44/VEGF, 105 calmoPK1 for bHl-44/HER2 and 89 calmor1!^1 for Herceptin®/HER2 (Table 15). This translates to AS CONF * -72 calmoPK·1 for bHl-44/VEGF, -70 calmol^K-1 for bHl-44/HER2, and -80 calmoPK for Herceptin®/HER2 · 1 (Table 15). To test the overall structural stability of the dual specific Fab compared to its parent Herceptin®, a differential scanning calorimetry (DSC) was used for thermal denaturation experiments. Thermal denaturation experiments were performed on a differential scanning calorimeter from Microcal Inc. The Fab was dialyzed against 10 mM sodium acetate (pH 5), 1 50 mM gasified sodium. The solution was adjusted to a concentration of 0.5 mg/ml and heated to 95 ° C at a rate of 1 ° C/min. Baseline calibration of the melting curve and correction. The melting temperature (TM) is determined using software supplied by the manufacturer. As expected, no Fab exhibited a reversible thermal denaturation profile (Kelley et al., 1992) (data not shown). The TM of the dual specific variant (77.2 ° C, 75.6 ° C, 74.3 ° C for bHl, bHl-81 and bHl_44, Table 16) is slightly lower than the Herceptin® TM (82.5 ° C), but High and in the range of Tm reported for other therapeutic antibodies (Garber and Demarest, 2007) 0 Binding of bHl variants with high affinity for VEGF or HER2 alone 142552.doc -176- 201011047 Mechanics and thermodynamics interesting In contrast, dual specific antibodies derive most of their binding energy from a completely unique region that shares the VEGF/HER2 binding site. These data show that VEGF or HER2 binding function of dual specific antibodies can be selectively disrupted without affecting the remaining binding specificity. Structural studies indicate that the structural complements on bH1 overlap significantly for VEGF and HER2, but the induction of alanine mutations in bHl and bHl-44 suggests that the VEGF and HER2 interactions are composed of two distinct CDR residues with few overlaps. The base is mediated (Figures 54 and 57 'Tables 9A, 9B and 10). bHl and bHl-44 are used to scan for alanine scans indicating that some CDR residues are only important for binding to VEGF or HER2 (Figures 54 and 57, Tables 9A, 9B and 10) 'including LC-Ile29, LC -Tyr32 (which is important for VEGF binding) and HC--Arg50, HC-Arg58 (for HER2 binding) (Figures 54 and 57, Table 9 and
10)。為證實該等殘基之側鏈在每一相互作用中之獨特重 要性,在 bHl-44(LC-Ile29、LC-Tyr32、HC,Arg50、HC-Arg58) 或Herceptin®(HC-Arg50、HC-Arg58)架構中,使每一殘基個 別地或組合地突變為丙胺酸且使突變體表現為Fab及IgG。 使用編碼經由重鏈融合至基因III N末端之bHl-44或 Herceptin® Fab的載體作為Kunkel突變誘發之模板(Kunkel 等人,1987)。設計寡核苷酸以於所選位置處引入所要丙 胺酸突變。如同噬菌體表現Fab丙胺酸突變體,且藉由競 爭ELISA證實結合(圖58)。隨後將重鏈及輕鏈可變域選殖 至Fab及IgG表現載體中,且如(Bostrom等人,2009)所述表 現及純化Fab及IgG。SDS-PAGE證實正確的蛋白質尺寸(圖 65)。尺寸排阻層析顯示小於5%之聚集程度。 142552.doc -177- 201011047 藉由競爭ELISA及/或BIAcore檢驗與兩種抗原之結合。 bHl-44架構中之所有單一丙胺酸突變在不同程度上削弱結 合(資料未顯示)。大部分顯著的單一突變為LC-Y32A,其 在維持HER2結合親和性及動力學之同時顯著破壞VEGF 結合(表12,圖58及圈63)。雙重突變I29A+Y32A(LC)或 R50A+R58A(HC)分別幾乎完全破壞與VEGF或HER2之結 合,同時維持對另一抗原之結合親和性及動力學(表12, 圖58及圈63)。Herceptin®架構中之丙胺酸突變HC-R50A、HC-R58A亦在不同程度上破壞與HER2之結合, 而雙重突變體HC R50A+R58A顯示無可偵測之HER2結合 (表 12)。 接著分析雙重突變體之熱力學參數且與bHl-44之值相 比較。bHl-44突變體 LC-I29A+Y32A 及 HC-R50A+R58A 與 HER2或VEGF之結合自由能分別係由焓及熵之有利貢獻 (對於 VEGF 而言,ΔΗ=-7.7 且-TAS = -3.9,對於 HER2 而 言,ΔΗ=-6.4且-TAS=-7.6,表13,圈60)產生,其大致等 於在30°C下所量測之bm-44(表13,圈60)。因此,雙重 突變體展示與bHl-44相同之熱力學及動力學概況。 142552.doc 178- 201011047 表14.對藉由丙胺酸掃描突變誘發就HER2結合而言所測定 之bHl、bHl-44及Hei*ceptin®熱點的比較 ___AAG (kcal/mol)_— _一 殘基 bHl/VEGF |bHl~44/VEGF bHl/Hi:R2 bHl-44/HER2 赫赛汀 輕鏈10). To confirm the unique importance of the side chains of these residues in each interaction, bHl-44 (LC-Ile29, LC-Tyr32, HC, Arg50, HC-Arg58) or Herceptin® (HC-Arg50, HC) In the -Arg58) framework, each residue is mutated individually or in combination to alanine and the mutant is expressed as Fab and IgG. A vector encoding bHl-44 or Herceptin® Fab fused to the N-terminus of gene III via a heavy chain was used as a template for Kunkel mutation induction (Kunkel et al., 1987). Oligonucleotides are designed to introduce the desired alanine mutation at the selected position. Fab alanine mutants were visualized as phage and binding was confirmed by competitive ELISA (Figure 58). The heavy and light chain variable domains are then cloned into Fab and IgG expression vectors and Fab and IgG are expressed and purified as described (Bostrom et al., 2009). SDS-PAGE confirmed the correct protein size (Figure 65). Size exclusion chromatography showed a degree of aggregation of less than 5%. 142552.doc -177- 201011047 Binding to both antigens by competitive ELISA and/or BIAcore assay. All single alanine mutations in the bHl-44 architecture weakened the binding to varying degrees (data not shown). The most significant single mutation was LC-Y32A, which significantly disrupted VEGF binding while maintaining HER2 binding affinity and kinetics (Table 12, Figure 58 and circle 63). The double mutations I29A+Y32A (LC) or R50A+R58A (HC) almost completely disrupted binding to VEGF or HER2, respectively, while maintaining binding affinity and kinetics for the other antigen (Table 12, Figure 58 and circle 63). The alanine mutations HC-R50A and HC-R58A in the Herceptin® architecture also disrupted binding to HER2 to varying degrees, while the double mutant HC R50A+R58A showed no detectable HER2 binding (Table 12). The thermodynamic parameters of the double mutants were then analyzed and compared to the values of bHl-44. The binding free energy of bHl-44 mutant LC-I29A+Y32A and HC-R50A+R58A to HER2 or VEGF is a favorable contribution of enthalpy and entropy, respectively (for VEGF, ΔΗ=-7.7 and -TAS = -3.9, For HER2, ΔΗ = -6.4 and -TAS = -7.6, Table 13, circle 60) was generated, which is approximately equal to bm-44 measured at 30 °C (Table 13, circle 60). Thus, the double mutant exhibited the same thermodynamic and kinetic profile as bHl-44. 142552.doc 178- 201011047 Table 14. Comparison of bHl, bHl-44 and Hei*ceptin® hotspots for HER2 binding induced by alanine scanning mutations ___AAG (kcal/mol)___ bHl/VEGF | bHl~44/VEGF bHl/Hi:R2 bHl-44/HER2 Herceptin light chain
····
重鏈 30 31 32 33 50 52 51 54 56 58 95 96 97 98 100 100a 0.2 0.2 -0.4 0.3C -0.3c 0.4 -0.5 -0.2 0.0 0.4 -0.4 1.2 -0.7 -0.1 0.1 0.7 -0.3 0.01a 0.6 0.4 0.1a 0.2 -0.4 -0.2 0.4Heavy chain 30 31 32 33 50 52 51 54 56 58 95 96 97 98 100 100a 0.2 0.2 -0.4 0.3C -0.3c 0.4 -0.5 -0.2 0.0 0.4 -0.4 1.2 -0.7 -0.1 0.1 0.7 -0.3 0.01a 0.6 0.4 0.1 a 0.2 -0.4 -0.2 0.4
-0.8 -0.4 0.2 0.06 -0.07® 0.1 -0.8 0.7a -0.1-0.8 -0.4 0.2 0.06 -0.07® 0.1 -0.8 0.7a -0.1
a不同於Herceptin®抗體之bHl/bHl-44殘基。c指示bHl/VEGF或bHl/HER2複 合物結構中之接觸殘基。㈠指示Herceptin®抗體在此位置處無殘基。 142552.doc -179- 201011047 表15. VEGF及HER2相互作用之熱力學參數。 ACp(cal/Kmol) AStot (cal/Kmol) △Sconf (cal/Kmo) △Sdesolv (cal/Kmol) ASrt(cal/Kmol) bHl-44/VEGF -400 16 -72 96 -8 bHl-44/HER2 -440 27 -70 105 -8 Herceptin®/HER2 -370 0.8 -80 89 -8 △Sconf=AStot-ASsolv-ASrt ’ 如由Murphy等人,ZVoie/似,iP料所述。對於簡 單結合反應而言,ASRT經估算為-8 cal/molK。ASSOLV=AS*+M:pln(T/Ts*),其 中T=303.15,Ts*=385.15且AS*約為0。 、 表16.雙重特異性Fab及Herceptin®抗體之溶融溫度(Tm)a is different from the bHl/bHl-44 residue of the Herceptin® antibody. c indicates the contact residue in the bHl/VEGF or bHl/HER2 complex structure. (a) Indicating that the Herceptin® antibody has no residues at this position. 142552.doc -179- 201011047 Table 15. Thermodynamic parameters of VEGF and HER2 interactions. ACp(cal/Kmol) AStot (cal/Kmol) △Sconf (cal/Kmo) △Sdesolv (cal/Kmol) ASrt(cal/Kmol) bHl-44/VEGF -400 16 -72 96 -8 bHl-44/HER2 -440 27 -70 105 -8 Herceptin®/HER2 -370 0.8 -80 89 -8 △Sconf=AStot-ASsolv-ASrt ' As described by Murphy et al., ZVoie/i, iP. For a simple binding reaction, the ASRT is estimated to be -8 cal/molK. ASSOLV = AS * + M: pln (T / Ts *), where T = 303.15, Ts * = 385.15 and AS * is approximately zero. Table 16. Melting temperatures (Tm) of dual specific Fab and Herceptin® antibodies
Fab Tm(°C) 5 2 6 3 2·7·5·4· 8 7 7 7 赫赛汀 bHl bHl-81 bHl-44 特異性改變之殘基之功能的結構基礎 接著,分析與VEGF或HER2複合之bH〗的晶體結構 (Bostrom等人,2009)以揭示結合決定子在各抗原複合物中 之特異性相互作用(圖64)。所得分析解釋兩個特異性决定 殘基之突變如何在不影響對一種抗原之親和性、動力學及 結合熱力學之情況下破壞對另一抗原之結合能力。bHl之 CDR-L1含有Herceptin®之序列的大部分變化且對於Ve〇f 結合而言係重要的。bHl之CDR-L1構形在兩種複合物結構 中顯著不同;平均偏差為4.6 A(殘基27-32 2Ca)。與此相 反,與VEGF複合之bHl Fab的總體構形明顯類似於結合 HER2之Fab的構形(r.m.s.d. = 0.7 A,對於398個骨架原子而 言,Ca)。在CDR-L1環位於HER2互補位之周邊且最小程度 地涉及HER2接觸時,該環佔由VEGF包埋之表面積的26。/〇。 142552.doc -180- 201011047 兩種複合物之疊加指示,VEGF將會與Tyr32及CDR-Ll 在其結合HER2之構形中之相鄰殘基相衝突。Ty r3 2之主鏈 Ca原子在兩種結構中位於相同位置,但其侧鏈旋轉了約 130°。在VEGF複合物中,Tyr32及Ile29在使得為VEGF結 合所需之CDR-L1構形成為可能方面似乎起著結構性作 用。Tyr32突變為Ala或Phe對於VEGF結合而言係不可容許 的(Bostrom等人,2009)。儘管Tyr32之側鏈朝向HER2,但 其似乎並未涉及生產性抗原接觸^ Ile29遠離HER2,其側 眷_ 鏈暴露於溶劑且Ile29及Tyr32突變為Ala對於HER2結合而 言係完全可容許的。Fab Tm(°C) 5 2 6 3 2·7·5·4· 8 7 7 7 Herceptin bHl bHl-81 bHl-44 Structural basis for the function of specifically altered residues Next, analysis with VEGF or HER2 The crystal structure of the composite bH (Bostrom et al., 2009) reveals the specific interaction of the binding determinants in each antigen complex (Figure 64). The resulting analysis explains how two specificity-determining residues of a residue disrupt the ability to bind to another antigen without affecting the affinity, kinetics, and thermodynamics of one antigen. The CDR-L1 of bHl contains most of the changes in the sequence of Herceptin® and is important for Ve〇f binding. The CDR-L1 configuration of bHl was significantly different in the two complex structures; the mean deviation was 4.6 A (residues 27-32 2Ca). In contrast, the overall configuration of the bHl Fab complexed with VEGF is clearly similar to the configuration of the Fab binding to HER2 (r.m.s.d. = 0.7 A, for 398 backbone atoms, Ca). When the CDR-L1 loop is located around the HER2 paratope and minimally involves HER2 contact, the loop occupies 26 of the surface area entrapped by VEGF. /〇. 142552.doc -180- 201011047 The superposition of the two complexes indicates that VEGF will conflict with the adjacent residues of Tyr32 and CDR-L1 in their binding to HER2. The main chain of Ty r3 2 Ca atoms are in the same position in both structures, but their side chains are rotated by about 130°. In the VEGF complex, Tyr32 and Ile29 appear to play a structural role in making possible formation of the CDR-L1 required for VEGF binding. Mutation of Tyr32 to Ala or Phe is not acceptable for VEGF binding (Bostrom et al., 2009). Although the side chain of Tyr32 faces HER2, it does not appear to be involved in the production of antigen-contacting Ile29 away from HER2, the side 眷_chain is exposed to solvent and the mutation of Ile29 and Tyr32 to Ala is fully tolerable for HER2 binding.
亦檢驗bHl/HER2複合物中就HER2結合而言具獨特重要 性之殘基的結構。在bHl-HER2結構中Arg50及Arg58之侧 鏈與HER2上之酸性殘基(Glu558及Asp560)疊靠(圖64)。相 互作用似乎具高度側鏈特異性,此係因為突變為Lys以及 Ala係破壞性的(Bostrom等人,2009)。然而,在VEGF結構 中,Arg50及Arg58暴露於溶劑且遠離VEGF,且突變為Ala 或Lys係完全可容許的(Bostrom等人,2009)。 引用文獻如下:The structure of the residue of the bHl/HER2 complex which is uniquely important for HER2 binding was also examined. The side chain of Arg50 and Arg58 in the bHl-HER2 structure overlaps with the acidic residues on HER2 (Glu558 and Asp560) (Fig. 64). The interaction appears to be highly side chain specific due to mutations in Lys and Ala destructive (Bostrom et al., 2009). However, in the VEGF structure, Arg50 and Arg58 are exposed to solvents and away from VEGF, and mutations to the Ala or Lys lines are fully tolerable (Bostrom et al., 2009). The citations are as follows:
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Winn, M. D·, Μ. N. Isupov及G. N. Murshudov,2001,Acta Crystallogr. D. Biol. Crystallogr•,第 57版’第 122 頁。 本說明書中所引用或參考之所有專利、專利申請案、專 利申請公開案及其他公開案均以引用的方式併入本文中, 該引用程度就如同特定地及個別地指示將各獨立專利、專 利申請案、專利申請公開案或公開案以引用的方式併入一 般。 【圖式簡單說明】 圖1展示各種LC庫之設計多樣性; 圖2展示用於改變抗VEGF抗體或抗Her2抗體以結合至另 一標把之四個輕鏈庫的概要。斜體之NNK及XYZ係指密碼 子組。Ys、Ds、Ts及Ss係指分別使酪胺酸、天冬胺酸、蘇 胺酸及絲胺酸之出現幾率為50%且使20種胺基酸中之任一 者之出現幾率為另外之50%的軟隨機化。D/Ds及T/Ts係指 分別使D或T之出現幾率為75%且使20種胺基酸中之任一者 142552.doc -186- 201011047 之出現幾率為另外之25%的軟隨機化; 圖3展示輕鏈模板之HC、LC CDR殘基的序列; 圖4展示輕鏈CDR之天然及設計多樣性。各位置處之 Herceptin®抗體序列係展示於括弧中。「*」表示Herceptin® 抗體中不存在之插入; ··Winn, M. D., Μ. N. Isupov and G. N. Murshudov, 2001, Acta Crystallogr. D. Biol. Crystallogr, 57th edition, page 122. All of the patents, patent applications, patent application publications and other publications cited in the specification are hereby incorporated by reference in their entirety in the entireties in The application, patent application publication or publication is incorporated by reference in its entirety. BRIEF DESCRIPTION OF THE DRAWINGS Figure 1 shows the design diversity of various LC libraries; Figure 2 shows an overview of four light chain libraries for altering anti-VEGF antibodies or anti-Her2 antibodies to bind to another standard. The italic NNK and XYZ refer to the codon set. Ys, Ds, Ts and Ss refer to the occurrence of tyrosine, aspartic acid, threonine and serine at 50% and the occurrence of either of the 20 amino acids. 50% soft randomization. D/Ds and T/Ts refer to soft randomization where the probability of occurrence of D or T is 75% and the occurrence of 142552.doc -186- 201011047 is 25% of the other 20 amino acids, respectively. Figure 3 shows the sequence of the HC, LC CDR residues of the light chain template; Figure 4 shows the natural and designal diversity of the light chain CDRs. The Herceptin® antibody sequence at each position is shown in brackets. "*" indicates an insertion that does not exist in the Herceptin® antibody;
圖5A及圖5B1-5B2展示自輕鏈(LC)庫分離出之特異性抗 原結合純系的序列。圖5A展示與VEGF、DR5及Fc結合之 單特異性噬菌體純系的LC CDR序列,且圖5B展示與 VEGF/HER2、DR5/HER2及 Fc/HER2結合之雙特異性 Fab。 除了 LC構架取代R66G以外,輕鏈構架及重鏈序列與 Herceptin®抗體一致; 圖6為展示源自LC庫之抗體之結合特異性的圖。圖上展 示關於抗體 bHl、bH3、3-1、bDl、bD2、4-1及 4-5 之結 果。以分光光度法偵測所結合之IgG抗體(於450 nm下之光 密度,y軸)。檢定中所包括之蛋白質為(對於各抗體而言自 左至右):人類血管内皮生長因子八(1^£0卩-八)、11¥丑0?-C、hVEGF-D、hHER2胞外域(ECD)、表皮生長因子受體胞 外域(hEGFR)、人類死亡受體5(hDR5)、牛血清白蛋白 (BSA)、酪蛋白、胎牛血清(FBS)、WIL2細胞溶胞物及NR6 細胞溶胞物; 圖7展示文庫C及D之揀選條件及富集; 圖8展示VEGF結合物。殘基28、30、30a、31、92、93 及93a完全不同。殘基32、50、53、91及94受到限定。殘 基29、33及51受到限制(<3); 142552.doc •187· 201011047 圖9展示人類VEGF結合物、組合培養盤及溶液選擇; 圖10A及圖10B展示結合VEGF及HER2兩者之純系; 圖11展示僅結合VEGF且喪失與HER2之結合活性的純 系; 圖12展示與VEGF結合之純系; 圖13A及圖13B展示阻斷VEGF與VEGFR1-D2或D1結合之 純系; 圖14A及圖14B展示VEGF結合物及來自文庫L1/L2/L3-C,D之VEGF結合物的親和性; 圖15展示可結合hVEGF及HER2兩者之純系; 圖16展示用於scFv'2形成且呈現於噬菌體上之LC庫結合 物; 圖17展示呈Fab或hlgG形式之各種純系的表現; 圖18八及圖186展示與11¥£0?165結合之111§0型純系的 ELISA ;Figure 5A and Figures 5B1-5B2 show sequences of specific antigen-binding pure lines isolated from a light chain (LC) library. Figure 5A shows LC CDR sequences of monospecific phage-pure lines that bind to VEGF, DR5 and Fc, and Figure 5B shows bispecific Fabs that bind to VEGF/HER2, DR5/HER2 and Fc/HER2. The light chain framework and heavy chain sequences are identical to Herceptin® antibodies except that the LC framework replaces R66G; Figure 6 is a graph showing the binding specificity of antibodies derived from LC pools. The results of the antibodies bHl, bH3, 3-1, bDl, bD2, 4-1 and 4-5 are shown on the graph. The bound IgG antibody (optical density at 450 nm, y-axis) was detected spectrophotometrically. The proteins included in the assay are (from left to right for each antibody): human vascular endothelial growth factor VIII (1^£0卩-eight), 11¥ ugly 0?-C, hVEGF-D, hHER2 extracellular domain (ECD), epidermal growth factor receptor extracellular domain (hEGFR), human death receptor 5 (hDR5), bovine serum albumin (BSA), casein, fetal bovine serum (FBS), WIL2 cell lysate, and NR6 cells Lysates; Figure 7 shows the sorting conditions and enrichment of libraries C and D; Figure 8 shows VEGF conjugates. Residues 28, 30, 30a, 31, 92, 93 and 93a are completely different. Residues 32, 50, 53, 91 and 94 are defined. Residues 29, 33, and 51 are restricted (<3); 142552.doc • 187· 201011047 Figure 9 shows human VEGF conjugates, combinatorial plates and solution selection; Figures 10A and 10B show both VEGF and HER2 binding Pure line; Figure 11 shows the pure line that binds only VEGF and loses binding activity to HER2; Figure 12 shows the pure line that binds to VEGF; Figure 13A and Figure 13B show the pure line that blocks the binding of VEGF to VEGFR1-D2 or D1; Figure 14A and Figure 14B displays the affinity of the VEGF conjugate and the VEGF conjugate from library L1/L2/L3-C, D; Figure 15 shows the pure line that binds both hVEGF and HER2; Figure 16 shows the formation for scFv'2 and presented in LC library conjugates on phage; Figure 17 shows the performance of various pure lines in the form of Fab or hlgG; Figure 18 and Figure 186 show the ELISA of 111 § 0 pure line in combination with 11¥£0?165;
圖19展示與固定化蛋白標靶結合之hlgG型純系的 ELISA ; 圖20展示hlgG型純系在Her2及VEGF或DR5存在下之競 爭性ELISA ; 圖21展示對與VEGF或HER2之結合的Biacore分析; 圖22展示具有獲自不同結合純系之輕鏈的IgG或Fab與 HER2-ECD 或 hVEGF之結合; 圖23A及圖23B展示阻斷VEGF與VEGFR1 D 1-3及KDR D1-7之相互作用的抗VEGF抗體; 142552.doc •188· 201011047 圖24展示阻斷B20-4.1與VEGF結合之抗體; 圖25展示阻斷Avastin®抗體與VEGF結合之抗體; 圖26展示結合至HER2或VEGF之雙特異性bHl Fab的晶 體結構; 圖27為展示抗VEGF抗體阻斷hVEGF與VEGF受體 2(VEGFR2)結合之圖; 圖28展示結合至HER2或VEGF之雙特異性bHl Fab的晶 體結構; 圖29為展示對bHl之結構互補位之個別CDR貢獻的一系 列圓餅圖。VEGF之互補位尺寸為730 A2且HER2之互補位 尺寸為690 A2。重鏈CDR係以灰色指示且輕鏈CDR係以白 色指示; 圖30展示結合VEGF/HER2之bHl或結合HER2之 Herceptin®抗體的CDR環在與圖28相同之方向上的疊加;Figure 19 shows an ELISA of the hlgG-type pure line that binds to the immobilized protein target; Figure 20 shows a competitive ELISA of the hlgG-type pure line in the presence of Her2 and VEGF or DR5; Figure 21 shows a Biacore analysis for binding to VEGF or HER2; Figure 22 shows the binding of IgG or Fab with different light chain from different binding lines to HER2-ECD or hVEGF; Figure 23A and Figure 23B show the resistance to block the interaction of VEGF with VEGFR1 D 1-3 and KDR D1-7 VEGF antibody; 142552.doc • 188· 201011047 Figure 24 shows blocking of B20-4.1 binding to VEGF; Figure 25 shows blocking of Avastin® antibody binding to VEGF; Figure 26 shows bispecific binding to HER2 or VEGF Figure 27 is a diagram showing the anti-VEGF antibody blocking the binding of hVEGF to VEGF receptor 2 (VEGFR2); Figure 28 shows the crystal structure of the bispecific bHl Fab bound to HER2 or VEGF; A series of pie charts that contribute to the individual CDRs of the structural complement of bHl. The complementary size of VEGF is 730 A2 and the complementary size of HER2 is 690 A2. The heavy chain CDRs are indicated in gray and the light chain CDRs are indicated in white; Figure 30 shows the superposition of the CDR loops of VEGF/HER2 binding bhl or HER2 binding Herceptin® antibody in the same orientation as Figure 28;
圖31展示結合至HER2或VEGF之雙特異性bHl Fab的晶 體結構。兩種bHl複合物之CDR-L1係以相同方向展示; 圖32展示就VEGF及HER2結合而言bHl在能量上重要之 結合位點; 圖33展示經獵槍掃描之bHl的密碼子; 圖 34展示文庫組合(library consortium); 圖35展示具有根據與VEGF結合而篩檢出之獵槍掃描突 變的抗體純系; 圖36展示具有根據與HER2結合而篩檢出之獵槍掃描突 變的抗體純系; 142552.doc -189- 201011047 圖37A-37D展示丙胺酸掃描結果。圖37A及圖37B展示就 VEGF結合或HER2結合而言對bHl之丙胺酸掃描的結果(分 別為圖37A、圖37B)及就VEGF結合或JJER2結合而言對 bH 1之同系物掃描的結果(分別為圖37C、圖37D); 圖38展示bHl或Herceptin®抗體突變體之丙胺酸掃描結 果; 圖39A1-39A3及圖39B1-39B3展示就與VEGF及HER2結 合而言對bHl Fab之撒槍丙胺酸掃描及同系物掃描結果; 圖40展示就VEGF及HER2結合而言bHl在能量上重要之 結合位點; 圖41展示bH 1 VEGF親和性成熟純系序列及對於veGF或 HER2之結合親和性; 圖42展示抗VEGF抗體對VEGF誘發之HUVEC細胞增殖 的抑制作用; 圖43展示雙特異性抗體與表現於NR6細胞上之HER2的結 合; 圖44展示bHl與VEGF或HER2之競爭性結合實驗的結 果; 圖45展示bHl及親和性改良型變異體bHl-44及bHl-81 IgG活體外抑制HER2及VEGF介導之細胞增殖; 圖46展示源自LC庫之雙特異性抗體的結合特異性; 圖47展示抗VEGF抗體阻斷VEGF與VEGFR2受體結合。 圖47A展示人類VEGF結合且囷47B展示鼠類VEGF結合; 圖48A及圖48B展示VEGF及HER2在溶液中競爭結合至 142552.doc -190· 201011047 bHl-44雙特異性IgG上; 圖49A及圖49B展示雙特異性抗體bHl及bHl-44結合至 HER2表現小鼠纖維母細胞(NR6 ;圖49B),但並未結合至 HER2陰性NR6細胞(圖49A); 圖5 0展示雙特異性bH 1抗體特異性地使VEGF或HER2而 非其他蛋白質自小鼠纖維母細胞(NR6)溶胞物中免疫沈澱 出來; 圖51展示bHl-44對於免疫受損小鼠體内之C〇1〇205及 BT474M1異種移植物的腫瘤抑制作用; 圖52A、52B及53展示用於實施本發明且具有如下序列 識別符之例示性受體人類共同構架序列: 可變重鏈(VH)共同構架(圖52A及圖52B) 缺少Kabat CDR之人類VH亞群I共同構架區FR1、FR2、 FR3 及 FR4(IA:分別為 SEQIDNO:42-45) 缺少擴展高變區之人類VH亞群I共同構架區FR1、FR2、 %FR3 及 FR4(IB :分別為 SEQ ID NO:46、47、44 及 45 ; 1C : 分別為 SEQ ID NO:46-48 及 45 ; ID :分別為 SEQ ID NO:42 ' 47、49及 45) 缺少Kabat CDR之人類VH亞群II共同構架區FR1、FR2、 FR3 及 FR4(IIA :分別為 SEQ ID NO:50-52 及 45) 缺少擴展高變區之人類VH亞群II共同構架區FR1、 FR2、FR3 及 FR4(IIB :分別為 SEQ ID NO:53、54、52及 45 ; IIC :分別為 SEQ ID NO:53-55 及 45 ; IID :分別為 SEQ ID NO:53、54、56及 45) 142552.doc -191 - 201011047 缺少Kabat CDR之人類VH亞群III共同構架區FRl、 FR2、FR3 及 FR4(IIIA :分別為 SEQ ID NO:57-59 及 45) 缺少擴展高變區之人類VH亞群III共同構架區FRl、 FR2、FR3 及 FR4(IIIB :分別為 SEQ ID NO:60、61、59 及 45;111(::分別為8£()1〇>1〇:60-62及45;111〇:分別為 SEQ ID NO:60、61、63及 45) 缺少Kabat CDR之人類VH受體構架區FRi、FR2、FR3及 FR4(受體A :分別為 SEQ ID NO:64、58、65及 45) 缺少擴展高變區之人類VH受體構架區FRl、FR2、FR3 及FR4(受體B :分別為SEQ ID NO:60、61、65及45 ;受體 C :分別為 SEQ ID NO:60、61 ' 66及 45) 缺少Kabat CDR之人類VH受體2構架區FRl、FR2、FR3 及 FR4(第二受體A :分別為 SEQ ID NO:64、58、67 及 45) 缺少擴展高變區之人類VH受體2構架區FRl、FR2、FR3 及 FR4(第二受體 B :分別為 SEQ ID NO:60、61、67及 45 ; 第二受體C :分別為SEQ ID NO:60、61、68及45 ;第二受 體D:分別為 SEQIDn〇:60、61、69及 45) 可變輕鏈(VL)共同構架(圖53) 人類VL κ亞群I共同構架區fri、FR2、FR3及FR4(kvl : 分別為 SEQ ID NO:70-73) 人類VL· κ亞群π共同構架區fri、FR2、FR3及 FR4(kv2:分別為 SEQidNO:74-76及73) 人類VL κ亞群III共同構架區fri、FR2及FR3(kv3 :分別 為 SEQ ID NO:77-79及 73) 142552.doc 192· 201011047 人類VL κ亞群IV共同構架區FRl、FR2及FR3(kv4 :分別 為 SEQ ID NO:80-82及 73); 圖54展示與HER2、VEGF或兩者產生結構性接觸或能量 相互作用之殘基。將與HER2(淺灰色)、VEGF(灰色)或兩 者(共用,黑色)產生結構性接觸(>25%包埋)或能量相互作 用(ΔΑΟ>10%總結合能)之殘基定位於結合HER2之bHl的表 面上; 圖55展示bHl/VEGF及bHl/HER2結合界面。 bHl/VEGF(A)及bHl/HER2(B)結合界面之特寫圖說明抗體 結合區中VEGF與HER2之間的結構性差異。VEGF(C)及 HER2-ECD(D)之表面表示係以相對於bHl Fab之相同方向 展示。突顯出與bHl Fab接觸之殘基(近於4·5 A)。就化學 組成或拓撲學而言,在bHl之兩個抗原決定基之間無明顯 類似性;Figure 31 shows the crystal structure of a bispecific bHl Fab bound to HER2 or VEGF. The CDR-L1 lines of the two bHl complexes are shown in the same orientation; Figure 32 shows the energy-important binding sites for bHl in terms of VEGF and HER2 binding; Figure 33 shows the codons of bHl scanned by shotgun; Figure 34 shows Library consortium; Figure 35 shows an antibody-only line with a shotgun scan mutation screened for binding to VEGF; Figure 36 shows an antibody-only line with a shotgun scan mutation screened for binding to HER2; 142552.doc -189- 201011047 Figures 37A-37D show the results of alanine scanning. Figure 37A and Figure 37B show the results of scanning for bHl alanine for VEGF binding or HER2 binding (Figure 37A, Figure 37B, respectively) and for homologs of bH 1 for VEGF binding or JJER2 binding ( Figure 37C, Figure 37D); Figure 38 shows alanine scan results for bHl or Herceptin® antibody mutants; Figure 39A1-39A3 and Figure 39B1-39B3 show the spray of propylamine to bHl Fab for binding to VEGF and HER2 Acid scanning and homolog scanning results; Figure 40 shows the energy-important binding sites of bH1 for VEGF and HER2 binding; Figure 41 shows bH 1 VEGF affinity matured pure sequence and binding affinity for veGF or HER2; 42 shows the inhibition of VEGF-induced HUVEC cell proliferation by anti-VEGF antibody; Figure 43 shows the binding of bispecific antibody to HER2 expressed on NR6 cells; Figure 44 shows the results of competitive binding experiments of bHl with VEGF or HER2; Figure 45 shows that bH1 and affinity-modified variants bHl-44 and bHl-81 IgG inhibit HER2 and VEGF-mediated cell proliferation in vitro; Figure 46 shows the binding specificity of bispecific antibodies derived from LC pool; Display anti-VEGF resistance Blocking VEGF binding to VEGFR2 receptor. Figure 47A shows human VEGF binding and 囷47B displays murine VEGF binding; Figure 48A and Figure 48B show that VEGF and HER2 compete for binding in solution to 142552.doc-190·201011047 bHl-44 bispecific IgG; Figure 49A and Figure 49B showed that the bispecific antibodies bH1 and bHl-44 bind to HER2 expressing mouse fibroblasts (NR6; Figure 49B) but not to HER2 negative NR6 cells (Fig. 49A); Figure 50 shows bispecific bH1 The antibody specifically immunoprecipitates VEGF or HER2 but not other proteins from mouse fibroblast (NR6) lysate; Figure 51 shows bHl-44 for C〇1〇205 in immunocompromised mice and Tumor Suppressor Effect of BT474M1 Xenografts; Figures 52A, 52B and 53 show exemplary receptor human common framework sequences for carrying out the invention and having the following sequence identifiers: Variable heavy chain (VH) common framework (Figure 52A and Figure 52B) Human VH subpopulation I common framework regions FR1, FR2, FR3 and FR4 lacking Kabat CDRs (IA: SEQ ID NO: 42-45, respectively) Human VH subpopulation I common framework regions FR1, FR2 lacking extended hypervariable regions , %FR3 and FR4 (IB: SEQ ID NO: 46, 47, 44 and 45; 1C: SEQ ID NOs: 46-48 and 45; ID: SEQ ID NO: 42 '47, 49 and 45, respectively) Human VH subgroup II common framework regions FR1, FR2, FR3 and FR4 lacking Kabat CDRs (IIA: The human VH subgroup II common framework regions FR1, FR2, FR3 and FR4 lacking the extended hypervariable region are SEQ ID NOS: 50-52 and 45, respectively (IIB: SEQ ID NO: 53, 54, 52 and 45, respectively; IIC: SEQ ID NOs: 53-55 and 45, respectively; IID: SEQ ID NO: 53, 54, 56 and 45, respectively) 142552.doc -191 - 201011047 Human VH subgroup III common framework region FRl lacking Kabat CDRs , FR2, FR3 and FR4 (IIIA: SEQ ID NOS: 57-59 and 45, respectively) lack of extended hypervariable region of human VH subgroup III common framework regions FR1, FR2, FR3 and FR4 (IIIB: SEQ ID NO, respectively : 60, 61, 59, and 45; 111 (:: 8 £ () 1 〇 > 1 〇: 60-62 and 45; 111 〇: SEQ ID NO: 60, 61, 63, and 45, respectively) The human VH receptor framework regions of the Kabat CDRs, FRi, FR2, FR3, and FR4 (receptor A: SEQ ID NOS: 64, 58, 65, and 45, respectively) lack the human VH receptor framework regions FR1, FR2 that extend the hypervariable region. , FR3 and FR4 (receptor B: SEQ ID NO: 60, 61, 65 and 45, respectively; C: SEQ ID NO: 60, 61 '66 and 45, respectively, human VH receptor 2 framework regions FR1, FR2, FR3 and FR4 lacking Kabat CDRs (second receptor A: SEQ ID NO: 64, 58, respectively , 67 and 45) lack of human VH receptor 2 framework regions FR1, FR2, FR3 and FR4 that extend the hypervariable region (second receptor B: SEQ ID NOs: 60, 61, 67 and 45, respectively; second receptor C: SEQ ID NOS: 60, 61, 68 and 45, respectively; second receptor D: SEQ IDn 〇: 60, 61, 69 and 45) Variable light chain (VL) common framework (Fig. 53) Human VL κ subgroup I common framework regions fri, FR2, FR3 and FR4 (kvl: SEQ ID NO: 70-73, respectively) Human VL·κ subgroup π common framework regions fri, FR2, FR3 and FR4 (kv2: SEQidNO, respectively :74-76 and 73) Human VL κ subgroup III common framework regions fri, FR2 and FR3 (kv3: SEQ ID NOs: 77-79 and 73, respectively) 142552.doc 192· 201011047 Human VL κ subgroup IV common framework Regions FR1, FR2, and FR3 (kv4: SEQ ID NOS: 80-82 and 73, respectively); Figure 54 shows residues that form structural or energy interactions with HER2, VEGF, or both. Residues that result in structural contact (>25% embedding) or energy interaction (ΔΑΟ> 10% total binding energy) with HER2 (light grey), VEGF (gray), or both (shared, black) Binding to the surface of bHl of HER2; Figure 55 shows the bHl/VEGF and bHl/HER2 binding interfaces. A close-up of the bHl/VEGF (A) and bHl/HER2 (B) binding interfaces illustrates the structural differences between VEGF and HER2 in the antibody binding region. The surface representations of VEGF (C) and HER2-ECD (D) are shown in the same orientation relative to bHl Fab. Residues that are in contact with bHl Fab (nearly 4. 5 A) are highlighted. In terms of chemical composition or topology, there is no significant similarity between the two epitopes of bHl;
圖56展示bHl及bHl-44抗體阻斷人類VEGF與VEGFR1結 合。將經生物素標記之人類VEGF165與漸增濃度(X軸)之Figure 56 shows that bHl and bHl-44 antibodies block human VEGF binding to VEGFRl. Biotinylated human VEGF165 with increasing concentration (X-axis)
IgG—起培育,隨後捕捉於固定化人類VEGFRl-Fc上,且 在添加受質下以結合辣根過氧化酶之抗生蛋白鏈菌素進行 偵測(經校正之% OD45G,y軸); 圖57展示bHl及bHl-44突變體之丙胺酸掃描結果。丙胺 酸掃描突變誘發識別對VEGF及/或HER2結合而言在功能上 具重要性之殘基。F值表示每一經掃描殘基對抗原結合之 相對貢獻。針對bHl-44與VEGF及HER2之結合測定F值(黑 條),且與bHl之F值(白條)相比較。括弧中之胺基酸表示 142552.doc •193- 201011047 不同於bHl之bHl-44殘基。該圖係自圖56修改而來; 圖 58 展示 bHl-44 I29A Y32A bHl-44 及 R50A R58A bHl-44抗體與VEGF及HER2之結合。ELISA結合檢定展示bHl-44 IgG及兩個雙重突變體分別結合至經生物素標記之 VEGF109(左)或HER2-ECD(右)及與固定化抗VEGF抗體或 Herceptin競爭的能力。I29A/Y32A LC突變體雖然對於 HER2維持與bHl-44類似之親和性,但已喪失VEGF結合能 力。R5 0A/R5 8A HC突變體已失去對HER2之親和性,但保 持VEGF結合; 圖59展示對與抗原結合相關之焓變化的量熱量測。圖 59A-F分別展示關於bHl與VEGF之結合、bHl與HER2之結 合、bHl-44與VEGF之結合、bHl-44與HER2之結合、bHl-44 HC-R50A + R58A 與 VEGF 之結合、bHl-44 LC-I29A+Y32A與HER2之結合的資料。該等圖展示個別熱脈 衝(上圖)及反應熱(下圖),後者係藉由對已作為在注射結 束時抗體與抗原之比率之函數作圖的每一脈衝求積分而計 算得出。小量值之焓變化需要相對較高之蛋白質濃度,其 當親和性高時排除對KD之準確估計; 圖59A-D :藉由15次注射濃度為100至200 μΜ之bHl或 bHl-44 Fab來滴定濃度在10至20 μΜ範圍内之VEGF109或 HER2-ECD溶液。圖59E-F :藉由20次注射濃度為150及 250 μΜ 之 bHl-44 LC-I29A+Y32A Fab 或 bHl-44 HC-R50A+R58A Fab來滴定濃度為10至20 μΜ之VEGF109或 HER2-ECD溶液。由於儀器雜訊,自分析中排除(圈59E)中 142552.doc -194- 201011047 之1號及13號滴定; 圖60展示bHl變異體及Herceptin®抗體之熱力學概況。 每一雙重特異性變異體(bHl、bHl-81及bHl-44)具有特徵 在於有利於VEGF及HER2結合之焓及熵的熱力學概況。分 別對HER2或VEGF已喪失親和性之變異體HC-R50A+R58A 及1^-129八+丫3 2八展示與1);«1-44類似之熱力學概況。1^1-44/HER2相互作用之熱力學概況不同於Herceptin/HER2 ; 圖61展示基於丙胺酸掃描突變誘發資料就HER2結合而 言對bHl、bHl-44及Herceptin®抗體熱點之比較。熱點殘 基係以定位於Herceptin®(赫賽汀)結構或bHl Fab結構 (bHl、bHl-44)上之灰色突顯出。熱點係定義為大於或等 於總結合自由能(AG)之10%的AAG。結構接觸位點(在結構 中之抗原的4.5 A以内)係以淺色虛線勾勒出。HC及LC為黑 色虛線所隔開。加下劃線之殘基的序列不同於IgG-cultured, then captured on immobilized human VEGFR1-Fc, and detected with streptavidin combined with horseradish peroxidase with added substrate (corrected % OD45G, y-axis); 57 shows the results of alanine scanning of bHl and bHl-44 mutants. Alanine scanning mutations induce the identification of residues that are functionally important for VEGF and/or HER2 binding. The F value indicates the relative contribution of each scanned residue to antigen binding. The F value (black bars) was determined for the binding of bHl-44 to VEGF and HER2 and compared to the F value of bHl (white bars). The amino acid in brackets indicates 142552.doc •193- 201011047 is different from the bHl-44 residue of bHl. The figure is modified from Figure 56; Figure 58 shows the binding of bHl-44 I29A Y32A bHl-44 and R50A R58A bHl-44 antibodies to VEGF and HER2. The ELISA binding assay demonstrated the ability of bHl-44 IgG and two double mutants to bind to biotinylated VEGF109 (left) or HER2-ECD (right) and to compete with immobilized anti-VEGF antibodies or Herceptin, respectively. The I29A/Y32A LC mutant, although maintaining similar affinity to bH1-44 for HER2, has lost VEGF binding ability. The R5 0A/R5 8A HC mutant has lost its affinity for HER2, but retains VEGF binding; Figure 59 shows the calorimetric measurement of the enthalpy change associated with antigen binding. Figure 59A-F shows binding of bH1 to VEGF, binding of bHl to HER2, binding of bHl-44 to VEGF, binding of bHl-44 to HER2, binding of bHl-44 HC-R50A + R58A to VEGF, bHl-, respectively. 44 LC-I29A + Y32A combined with HER2 data. The figures show individual heat pulses (top panel) and heat of reaction (bottom panel), which are calculated by integrating each pulse that has been plotted as a function of the ratio of antibody to antigen at the end of the injection. A small change in 需要 requires a relatively high protein concentration, which excludes an accurate estimate of KD when the affinity is high; Figure 59A-D: bHl or bHl-44 Fab at a concentration of 100 to 200 μΜ by 15 injections To titrate the VEGF109 or HER2-ECD solution at a concentration ranging from 10 to 20 μΜ. Figure 59E-F: titration of VEGF109 or HER2-ECD at a concentration of 10 to 20 μM by 20 injections of bHl-44 LC-I29A+Y32A Fab or bHl-44 HC-R50A+R58A Fab at a concentration of 150 and 250 μM Solution. Due to instrumental noise, the titrations of No. 1 and No. 13 of 142552.doc-194-201011047 were excluded from the analysis (Circle 59E); Figure 60 shows the thermodynamics of the bHl variant and the Herceptin® antibody. Each of the dual specific variants (bHl, bHl-81 and bHl-44) has a thermodynamic profile characterized by a favorable enthalpy and entropy for VEGF and HER2 binding. Variants HC-R50A+R58A and 1^-129 VIII + 丫3 2 VIII exhibiting loss of affinity for HER2 or VEGF, respectively, are shown in 1); a similar thermodynamic profile of «1-44. The thermodynamic profile of the 1^1-44/HER2 interaction is different from that of Herceptin/HER2; Figure 61 shows a comparison of bHl, bHl-44 and Herceptin® antibody hotspots for HER2 binding based on alanine scanning mutation-inducing data. Hot-spot residues are highlighted by gray located on the Herceptin® structure or the bHl Fab structure (bHl, bHl-44). A hotspot is defined as an AAG that is greater than or equal to 10% of the total combined free energy (AG). The structural contact sites (within 4.5 A of the antigen in the structure) are outlined in light dashed lines. HC and LC are separated by a black dotted line. The sequence of the underlined residue is different
Herceptin® ;Herceptin® ;
圖62展示與bHl-44 Fab與VEGF或HER2之結合相關的估 計熱容量變化。ACp係根據在20°C與37°C之間AH之溫度依 賴性的斜率而求出。基於AH與T之間的線性關係’在此範 圍内,ACp似乎與T無關(對於bHl-44/HER2而言R=0.991 ’ 對於 bHl-44/VEGF 而言 R=0.9989)。Herceptin®/HER2 之 ACp先前已由 Kelley 等人(Biochemistry’ 1992)測出; 圖63A-B展示藉由BIAcore量測之bHl-44變異體的結合動 力學。該等圖展示就固定化(A)VEGF109或(B)HER2-ECD與 bHl-44 Fab(紅色)、bHl-44-LC-Y32(綠色)、bHl-44-LC- 142552.doc -195- 201011047 I29A+Y32A(洋紅色)及 bHl-44-HC-R50A+R58A(灰色)之 0.5 μΜ溶液之間的結合相互作用而言代表性反應相對於時間 之曲線的重疊。跡線表示與相同之固定化CM5晶片的結 合,其在每次Fab操作後再生。在0.5 μΜ下,未偵測到 bHl-44-LC-I29A+Y32A 與 VEGF 或 bHl-44-HC-R50A+R58A 與HER2之結合。變異體bHl-44-Y32A展示與野生型bHl-44 相比與VEGF之結合顯著變弱; 圖64A-D展示bHl-44之特異性決定殘基於bHl之晶體結 構上的定位。對於VEGF結合而言重要之殘基(LC-I29及 LC-Y32 ; A及B)及對於HER結合而言重要之殘基(HC-R50 及HC-R58 ; C及D)係以深灰色展示為bHl/VEGF(A及C, 2.6 A解析度)或bHl/HER2(B及D,2.9 A解析度)晶體結構 上之棒狀物。殘基129及Y32似乎涉及於用以維持為VEGF 結合必需之CDR-L1環構形的鏈内相互作用中。129經溶劑 暴露於HER2結構中。Y32與HER2疊靠,但未參與生產性 抗原接觸。R50及R58與HER2上之D560及E558疊靠且似乎 參與電荷-電荷相互作用。R50及R5 8經溶劑暴露於VEGF溶 劑結構中;及 圖 65 展示 Herceptin® 突變體 Fab(R50A、R58A 及 R50A/R58A)之表現。 142552.doc -196- 201011047 序列表 <110>多重特異性抗體 <120>美商建南德克公司 <130> 50474/018002 <140> 098129415 <141> 2009-09-01 <150> US 61/190,856 <151> 2008-09-03 <160> 85 <170> patentin version 3.5 <210> 1 <211> 9Figure 62 shows estimated heat capacity changes associated with binding of bHl-44 Fab to VEGF or HER2. The ACp is obtained from the slope of the temperature dependence of AH between 20 ° C and 37 ° C. Based on the linear relationship between AH and T', within this range, ACp appears to be independent of T (R = 0.919 ' for bHl-44/HER2 and R = 0.9989 for bHl-44/VEGF). The ACp of Herceptin®/HER2 was previously determined by Kelley et al. (Biochemistry' 1992); Figures 63A-B show the binding kinetics of the bHl-44 variant measured by BIAcore. These figures show the immobilization of (A) VEGF109 or (B) HER2-ECD with bHl-44 Fab (red), bHl-44-LC-Y32 (green), bHl-44-LC-142552.doc-195- 201011047 Overlap of a representative reaction versus time curve for the binding interaction between I29A+Y32A (magenta) and bHl-44-HC-R50A+R58A (grey) 0.5 μΜ solution. The traces indicate the combination with the same immobilized CM5 wafer, which is regenerated after each Fab operation. At 0.5 μΜ, no binding of bHl-44-LC-I29A+Y32A to VEGF or bHl-44-HC-R50A+R58A to HER2 was detected. The variant bHl-44-Y32A showed significantly weaker binding to VEGF compared to wild-type bHl-44; Figures 64A-D show that the specificity of bH1-44 determines the localization of the crystal structure based on bHl. Residues important for VEGF binding (LC-I29 and LC-Y32; A and B) and residues important for HER binding (HC-R50 and HC-R58; C and D) are shown in dark gray It is a rod on the crystal structure of bHl/VEGF (A and C, 2.6 A resolution) or bHl/HER2 (B and D, 2.9 A resolution). Residues 129 and Y32 appear to be involved in intrachain interactions to maintain the CDR-L1 loop configuration necessary for VEGF binding. 129 was exposed to the HER2 structure via solvent. Y32 overlaps with HER2 but is not involved in productive antigen contact. R50 and R58 overlap with D560 and E558 on HER2 and appear to be involved in charge-charge interactions. R50 and R5 8 were exposed to solvent in the VEGF solvent structure; and Figure 65 shows the performance of the Herceptin® mutant Fab (R50A, R58A and R50A/R58A). 142552.doc -196- 201011047 Sequence Listing <110>Multispecific Antibody <120>US-based Nandek Corporation<130> 50474/018002 <140> 098129415 <141> 2009-09-01 <;150> US 61/190,856 <151> 2008-09-03 <160> 85 <170> patentin version 3.5 <210> 1 <211>
<212> PRT <213>人造序列 <220> <223> 合成肽 <400> 1 Α5Π lie Ala Lys Thr lie Ser Gly Tyr 1 5 <210> 2 <211> 6 <212> PRT <213> 人造序列 <220> <223> 合成肽 <400> 2 Trp Gly Ser Phe Leu Tyr<212> PRT < 213 > artificial sequence <220><223> Synthetic peptide <400> 1 Α5Π lie Ala Lys Thr lie Ser Gly Tyr 1 5 <210> 2 <211> 6 <212> ; PRT <213> Artificial Sequence <220><223> Synthetic Peptide <400> 2 Trp Gly Ser Phe Leu Tyr
<210> 3 <211> 6 <212> PRT <213> 人造序列 <220> <223>合成肽 <400> 3<210> 3 <211> 6 <212> PRT <213> Artificial sequence <220><223> Synthetic peptide <400>
His Tyr Ser Ser pro Pro 1 5 <210> 4 <211> 6 <212> PRT <213> 人造序列 142552-序列表.doc 201011047 <220> <223>合成肽 <400> 4His Tyr Ser Ser Pro Pro 1 5 <210> 4 <211> 6 <212> PRT <213> Artificial sequence 142552 - Sequence Listing.doc 201011047 <220><223>Synthetic peptide <400> 4
Asn lie Lys Asp Thr Tyr 1 5 <210> 5 <211> 10 <212> PRT <213> 人造序列 <220> <223>合成肽 <400> 5Asn lie Lys Asp Thr Tyr 1 5 <210> 5 <211> 10 <212> PRT <213> Artificial sequence <220><223> Synthetic peptide <400>
Arg lie Tyr Pro Thr Asn Gly Tyr Thr Arg 15 10 <210> 6 <211> 10 <212> PRT <213> 人造序列 <220> <22〗> 合成肽 <400> 6Arg lie Tyr Pro Thr Asn Gly Tyr Thr Arg 15 10 <210> 6 <211> 10 <212> PRT <213> Artificial sequence <220><22〗> Synthetic peptide <400>
Trp Gly Gly Asp Gly Phe Tyr Ala Met Asp 1 5 10 <210> 7 <211> 6 <212> PRT <213> 人造序列 <220> <223>合成肽 <400> 7Trp Gly Gly Asp Gly Phe Tyr Ala Met Asp 1 5 10 <210> 7 <211> 6 <212> PRT <213> Artificial sequence <220><223> Synthetic peptide <400>
Asn lie Ser Gly Thr Tyr 1 5 <210> 8 <211> 10 <212> PRT <213>人造序列 <220> <223>合成肽 <400> 8Asn lie Ser Gly Thr Tyr 1 5 <210> 8 <211> 10 <212> PRT <213> Artificial sequence <220><223> Synthetic peptide <400>
Arg lie Tyr Pro Ser Glu Gly Tyr Thr Arg 1 5 10 -2- 142552-序列表.doc 201011047 <210> 9 <211> 10 <212> PRT <213>人造序列 <220> <223>合成肽 <400> 9Arg lie Tyr Pro Ser Glu Gly Tyr Thr Arg 1 5 10 -2- 142552 - Sequence Listing.doc 201011047 <210> 9 <211> 10 <212> PRT <213> Artificial Sequence <220><223>Synthetic peptide <400> 9
Trp val Gly val Gly Phe Tyr Ala Met Asp 1 5 10 <210> 10 <211> 214 <212> PRT <213> 智人 <400> 10Trp val Gly val Gly Phe Tyr Ala Met Asp 1 5 10 <210> 10 <211> 214 <212> PRT <213> Homo sapiens <400>
Asp lie Gin Met Thr Gin Ser Pro ser Ser Leu Ser Ala Ser Val Gly ·· asd Ara Val Thr lie Thr Cys Arg Ala ser Gin Asp val Asn Thr Ala 20 25 30 val Ala Trp Tyr Gin Gin Lys Pro Gly Lys Ala Pro Lys Leu Leu lie 35 40 45Asp lie Gin Met Thr Gin Ser Pro Ser Ser Leu Ser Ala Ser Val Gly ·· asd Ara Val Thr lie Thr Cys Arg Ala ser Gin Asp val Asn Thr Ala 20 25 30 val Ala Trp Tyr Gin Gin Lys Pro Gly Lys Ala Pro Lys Leu Leu lie 35 40 45
Tvr ser Ala Ser Phe Leu Tyr ser Gly val Pro Ser Arg Phe Ser Gly 50 55 60Tvr ser Ala Ser Phe Leu Tyr ser Gly val Pro Ser Arg Phe Ser Gly 50 55 60
Ser Glv ser Gly Thr Asp Phe Thr Leu Thr lie Ser Ser Leu Gin Pro 65 70 75 80Ser Glv ser Gly Thr Asp Phe Thr Leu Thr lie Ser Ser Leu Gin Pro 65 70 75 80
Glu asp Phe Ala Thr Tyr Tyr cys Gin Gin His Tyr Thr Thr Pro pro 85 90 95Glu asp Phe Ala Thr Tyr Tyr cys Gin Gin His Tyr Thr Thr Pro pro 85 90 95
Thr Phe Gly Gin Gly Thr Lys val Glu lie Lys Arg Thr val Ala Ala 100 105 110Thr Phe Gly Gin Gly Thr Lys val Glu lie Lys Arg Thr val Ala Ala 100 105 110
Pro Ser val Phe lie Phe Pro pro Ser Asp Glu Gin Leu Lys Ser Gly 115 120 125Pro Ser val Phe lie Phe Pro pro Ser Asp Glu Gin Leu Lys Ser Gly 115 120 125
Thr Ala ser Val val Cys Leu Leu Asn Asn Phe Tyr Pro Arg Glu Ala 130 135 140Thr Ala ser Val val Cys Leu Leu Asn Asn Phe Tyr Pro Arg Glu Ala 130 135 140
Lys Val Gin Trp Lys Val Asp Asn Ala Leu Gin Ser Gly Asn Ser Gin 145 150 155 160 142552-序列表.doc 201011047Lys Val Gin Trp Lys Val Asp Asn Ala Leu Gin Ser Gly Asn Ser Gin 145 150 155 160 142552 - Sequence Listing.doc 201011047
Glu Ser Val Thr Glu Gin Asp ser 165Glu Ser Val Thr Glu Gin Asp ser 165
Ser Thr Leu Thr Leu ser Lys Ala 180Ser Thr Leu Thr Leu ser Lys Ala 180
Ala cys Glu val Thr His Gin G]y 195 2〇〇Ala cys Glu val Thr His Gin G]y 195 2〇〇
Phe Asn Arg Gly Glu Cys 210Phe Asn Arg Gly Glu Cys 210
Lys Asp Ser Thr Tyr Ser Leu Ser 170 175Lys Asp Ser Thr Tyr Ser Leu Ser 170 175
Asp Tyr Glu Lys His Lys Val Tyr 185 190Asp Tyr Glu Lys His Lys Val Tyr 185 190
Leu ser ser Pro val Thr Lys Ser 205 <210> 11 <211> 227 <212> PRT <213> 智人 <400> 11Leu ser ser Pro val Thr Lys Ser 205 <210> 11 <211> 227 <212> PRT <213> Homo sapiens <400>
Glu val Gin Leu val Glu Ser Gly Gly Gly Leu Val Gin Pro Gly Gly 15 丄5 ser Leu Arg Leu ser Cys Ala Ala Ser Gly Phe Asn lie Lys Asp Thr ·>λ jwGlu val Gin Leu val Glu Ser Gly Gly Gly Leu Val Gin Pro Gly Gly 15 丄5 ser Leu Arg Leu ser Cys Ala Ala Ser Gly Phe Asn lie Lys Asp Thr ·>λ jw
Tyr lie His Trp Val Arg Gin Ala Pro Gly Lys Gly Glu Trp valTyr lie His Trp Val Arg Gin Ala Pro Gly Lys Gly Glu Trp val
Ala Arg lie Tyr Pro Thr Asn G"ly 丁y「Thr Arg lyr Ala Asp Ser Val 50 55 60Ala Arg lie Tyr Pro Thr Asn G"ly Ding y "Thr Arg lyr Ala Asp Ser Val 50 55 60
Lys Gly Arq Phe Thr lie Ser Ala Asp Thr Ser Lys Asn Thr Ala Tyr 65 70 75 80Lys Gly Arq Phe Thr lie Ser Ala Asp Thr Ser Lys Asn Thr Ala Tyr 65 70 75 80
Leu Gin Met Asn ser Leu Arg Ala Glu Asp Thr Ala va! Tyr cysLeu Gin Met Asn ser Leu Arg Ala Glu Asp Thr Ala va! Tyr cys
Ser Arg Trp Gly Gly Asp Gly Phe Tyr Ala Met Asp Tyr Trp Gly Gin 100 105 110Ser Arg Trp Gly Gly Asp Gly Phe Tyr Ala Met Asp Tyr Trp Gly Gin 100 105 110
Gly Thr Leu val Thr Val ser ser Ala ser Thr Lys Gly Pro ser val 115 120 125Gly Thr Leu val Thr Val ser ser Ala ser Thr Lys Gly Pro ser val 115 120 125
Phe Pro Leu Ala Pro Ser ser Lys ser Thr ser Gly Gly Thr Ala Ala 130 135 140Phe Pro Leu Ala Pro Ser ser Lys ser Thr ser Gly Gly Thr Ala Ala 130 135 140
Leu Gly cys Leu Val Lys Asp Tyr Phe Pro Glu Pro val Thr val ser 145 150 155 160 142552·序列表.doc -4 - 201011047Leu Gly cys Leu Val Lys Asp Tyr Phe Pro Glu Pro val Thr val ser 145 150 155 160 142552 · Sequence Listing.doc -4 - 201011047
Trp Asn Ser Gly Ala Leu Thr Ser Gly Val His Thr Phe Pro Ala val 165 170 175Trp Asn Ser Gly Ala Leu Thr Ser Gly Val His Thr Phe Pro Ala val 165 170 175
Leu Gin Ser Ser Gly Leu Tyr Ser Leu Ser ser val Val Thr Val Pro 180 185 190Leu Gin Ser Ser Gly Leu Tyr Ser Leu Ser ser val Val Thr Val Pro 180 185 190
Ser Ser Ser Leu Gly Thr Gin Thr Tyr lie Cys Asn Val Asn His Lys 195 200 205Ser Ser Ser Leu Gly Thr Gin Thr Tyr lie Cys Asn Val Asn His Lys 195 200 205
Pro Ser Asn Thr Lys Val Asp Lys Lys Val Glu Pro Lys Ser cys Asp 210 215 220Pro Ser Asn Thr Lys Val Asp Lys Lys Val Glu Pro Lys Ser cys Asp 210 215 220
Lys Thr His 225Lys Thr His 225
<210> 12 <211> 6 <212> PRT <213> 人造序列 <220> <223>合成肽 <400> 12<210> 12 <211> 6 <212> PRT <213> Artificial sequence <220><223> Synthetic peptide <400>
Asp val Asn Thr Ala val 1 5 <210> <211> <212> <213> 13 4 PRT 人造序列 <220> <223> 合成肽 <400> 13 Ser Ala Ser Phe 1 <210> <211> <212> <213> 14 4 PRT 人造序列 <220> <223> 合成肽 <400> 14 His Tyr Thr Thr 1 <210> 15 142552-序列表.doc 201011047 <211> 6 <212> PRT <213> 人造序列 <220> <223> 合成肽 <400> 15 Asn val 1 Trp Asp Trp val 1 5 <210> 16 <211> 4 <212> PRT <213> 人造序列 <220> <223> 合成肽 <400> 16 Pro Ala ser ser 1 <210> 17 <211> 5 <212> PRT <213> 人造序列 <220> <223> 合成肽 <400> 17 Gly Trp Tyr lie Ala 1 5 <210> 18 <211> 10 <212> PRT <213> 人造序列 <220> <223> 合成肽 <400> 18Asp val Asn Thr Ala val 1 5 <210><211><212><213> 13 4 PRT artificial sequence <220><223> Synthetic peptide <400> 13 Ser Ala Ser Phe 1 < ;210><211><212><213> 14 4 PRT artificial sequence <220><223> Synthetic peptide <400> 14 His Tyr Thr Thr 1 <210> 15 142552 - Sequence Listing. Doc 201011047 <211> 6 <212> PRT <213> Artificial sequence <220><223> Synthetic peptide <400> 15 Asn val 1 Trp Asp Trp val 1 5 <210> 16 <211> 4 <212> PRT <213> Artificial sequence <220><223> Synthetic peptide <400> 16 Pro Ala ser ser 1 <210> 17 <211> 5 <212> PRT <213> Artificial sequence <220><223> Synthetic peptide <400> 17 Gly Trp Tyr lie Ala 1 5 <210> 18 <211> 10 <212> PRT <213> Artificial sequence <220>;<223> Synthetic peptide <400> 18
Asp lie Pro Arg Ser He Ser Gly Tyr Val 1 5 10 <210> 19 <211> 4 <212> PRT <213>人造序列 <220> <223>合成肽 -6 - 142552-序列表.doc 201011047Asp lie Pro Arg Ser He Ser Gly Tyr Val 1 5 10 <210> 19 <211> 4 <212> PRT <213> Artificial Sequence <220><223> Synthetic Peptide-6 - 142552 - Preface List .doc 201011047
<400> 19 Trp Gly Ser Tyr 1 <210> 20 <211> 4 <212> PRT <213> 人造序列 <220> <223> 合成肽 <400> 20 His Tyr Thr Thr 1 <210> 21 <2U> 7 <212> PRT <213> 人造序列 <220> <223> 合成肽 <400> 21 Asp lie Gly Leu Gly Ser val 1 5 <210> 22 <211> 4 <212> PRT <213> 人造序列 <220> <223> 合成肽 <400> 22 Trp Ala ser Tyr 1 <210> 23 <211> 7 <212> PRT <213> 人造序列 <220> <223> 合成肽 <400> 23 Asp lie Arg ser Gly Ser val <210〉 24 142552-序列表.doc 201011047 <210> 25 <211> 12 <212> DNA <213> 人造序列 <220> <223> 合成式序列 <220> <221> misc-feature <222> (4)..(5) <22B> n為a、c、g或t <220> <221> rm'sc_feature <222> (6)·.(6) <223> g及t以等莫耳比存在 <220> <221> mi sc一feature <222> ⑺· ·⑻ <223> n為a、c、g或t <220> <221> mi sc一feature <222> (9)…C9) <223> g及t以等莫耳比存在 <400> 25 catnnknnkr st <210> 26 <211> 12 <212> DNA <213> 人造序列 <220> <223> 合成式序列 <220> <221> misc_feature <222> ⑷··(9) <223> a、g、c及t以等莫耳比存在 <400> 26 kmtnnnnnnr st<400> 19 Trp Gly Ser Tyr 1 <210> 20 <211> 4 <212> PRT <213> Artificial sequence <220><223> Synthetic peptide <400> 20 His Tyr Thr Thr 1 <210> 21 <2U> 7 <212> PRT <213> Artificial sequence <220><223> Synthetic peptide <400> 21 Asp lie Gly Leu Gly Ser val 1 5 <210> 22 <211> 4 <212> PRT <213> Artificial sequence <220><223> Synthetic peptide <400> 22 Trp Ala ser Tyr 1 <210> 23 <211> 7 <212> ; PRT < 213 > artificial sequence <220><223> synthetic peptide <400> 23 Asp lie Arg ser Gly Ser val <210> 24 142552 - Sequence Listing.doc 201011047 <210> 25 <211> 12 <212> DNA <213> Artificial Sequence <220><223> Synthetic Sequence <220><221> misc-feature <222> (4)..(5) <22B> n is a, c, g or t <220><221> rm'sc_feature <222> (6)·.(6) <223> g and t exist in equal molar ratio <;220><221> mi sc a feature <222> (7) · (8) <223> n is a, c, g or t <220><221> mi sc a feature <222> ) (C9) <223> g and t exist in equal molar ratio <400> 25 catnnknnkr st <210> 26 <211> 12 <212> DNA <213> artificial sequence <220>;223> Synthetic sequence <220><221> misc_feature <222> (4)·(9) <223> a, g, c, and t exist in equal molar ratio <400> 26 kmtnnnnnnr st
12 <211> 6 <212> PRT <213> 人造序列 <220> <22B> 合成肽 <400> 24 Tyr Ser Thr val Pro Trp 1 5 142552-序列表.doc 12 201011047 <210> 27 <211> 12 <212> DNA <213>人造序列 <220> <223>合成式序列 <220> <221> mi sc一feature <222> (4),·(9) <223> a、g、c及t以等莫耳比存在 12 <400> 27 dggnnnnnnr st <210> 28 <211> 12 <212> DNA <213>人造序列12 <211> 6 <212> PRT <213> Artificial sequence <220><22B> Synthetic peptide <400> 24 Tyr Ser Thr val Pro Trp 1 5 142552 - Sequence Listing.doc 12 201011047 < 210 < 211 > 12 <212> DNA <213> artificial sequence <220><223> synthetic sequence <220><221> mi sc-feature <222> (4), (9) <223> a, g, c, and t exist in the same molar ratio 12 <400> 27 dggnnnnnnr st <210> 28 <211> 12 <212> DNA <213>
<220> <223>合成式序列 <220> <221> mi sc一feature <222> (1)..(2) <223> η為a、c、g或t <220> <221> misc_feature <222> (3)..(3) <223> g>^t以等莫耳比存在 <220> <221> mi sc一feature <222> (10)·(11) <223> η為a、c、gilt <220> <221> mi sc一feature <222> (12)··(12) <223> §及1以等莫耳比存在 12 <400> 28 nnkgsttccn nk <210> 29 <211> 12 <212> DNA <213> 人造序列 <220> <223>合成式序列 <220> <221> misc_feature 142552-序列表.doc 12 201011047 <222> (10)·(11) <223> η為a、c、g或t <220> <221> mi sc一feature <222> (12)..(12) <223> g及t以等莫耳比存在 <400> 29 tgggsttccn nk <210> 30 <211> 12 <212> DNA <213> 人造序列 <220> <223> 合成式序列 <400> 30 kgggsttcct mt <210> 31 <211> 12 <212> DNA <213> 人造序列 <220> <223> 合成式序列 <220> <221> misc_feature <222> (1)..(2) <223> η為a、c、g或t <220> <221> mi sc一feature <222> (3)·. (3) <223> g及t以拿萁耳比存在 <400> 31 nnkgsttcct mt <210> 32 <211> 18 <212> DNA <213> 人造序列 <220> <223> 合成式序列 <220> <221> misc_feature <222> (1)..(1) <223> <220> g佔 70%,t佔 10%,a佔 10%且c佔 10% 12 12 142552-序列表.doc 10- 201011047 <221> mi sc一feature <222> (2).(2) <223> gtt 10%,t佔 10%,a佔70%且c佔 10% <220> <221> mi sc一feature <222> (3)..(3) <223> g佔 10%,t佔 10%,a佔 10%且c佔70% <220> <221> misc^feature <222> (7)··(8) <223> n爲a、c、g或t <220> <221> nri sc一feature <222> (9).(9) <223> git以奪莫耳比存在 <220><220><223> Synthetic sequence <220><221> mi sc-feature <222> (1)..(2) <223> η is a, c, g or t <220><221> misc_feature <222> (3)..(3) <223>g>^t exists in equal molar ratio <220><221> mi sc-feature <222> 10)·(11) <223> η is a, c, gilt <220><221> mi sc-feature <222> (12)·(12) <223> § and 1 to wait Mohr than 12 <400> 28 nnkgsttccn nk <210> 29 <211> 12 <212> DNA <213> artificial sequence <220><223> synthetic sequence <220><221> misc_feature 142552-Sequence table.doc 12 201011047 <222> (10)·(11) <223> η is a, c, g or t <220><221> mi sc-feature <222> (12)..(12) <223> g and t exist in equal molar ratio <400> 29 tgggsttccn nk <210> 30 <211> 12 <212> DNA <213><220><223> Synthetic sequence <400> 30 kgggsttcct mt <210> 31 &l t; 211 > 12 <212> DNA <213> Artificial sequence <220><223> Synthetic sequence <220><221> misc_feature <222> (1).. (2) <223> η is a, c, g or t <220><221> mi sc a feature <222> (3)·. (3) <223> g and t are present in the ear-ear ratio<400> 31 nnkgsttcct mt <210> 32 <211> 18 <212> DNA <213> Artificial sequence <220><223> Synthetic sequence <220><221> misc_feature <222> (1)..(1) <223><220> g accounts for 70%, t accounts for 10%, a accounts for 10% and c accounts for 10% 12 12 142552 - Sequence Listing. doc 10-201011047 <221> Mi sc a feature <222> (2). (2) <223> gtt 10%, t is 10%, a is 70% and c is 10% <220><221> mi sc a feature < ;222> (3)..(3) <223> g accounted for 10%, t accounted for 10%, a accounted for 10% and c accounted for 70% <220><221> misc^feature <222> 7)···(8) <223> n is a, c, g or t <220><221> nri sc a feature <222> (9).(9) <223> Mobibi exists <220>
<2 21> misc_feature <222> CIO)..¢11) <223> n為a、c、g咸t <220> <221> mi sc一feature <222> (12)..C12) <223> g及t以等莫茸比存在 <400> 32 nnnrttnnkn nktacsta <210> 33 <211> 18 <212> DNA <213>人造序列 <220> <223>合成式序列 <220> <221> <222> <223> mi sc一feature CD .. Cl) g佔 70%,t佔 10%,a佔 10%且c佔 10% <220> <221> mi sc一feature <222> (2)..(2) <223> 笆佔10%,t佔 10%,a佔70%且c佔 10% <220> <221> misc—feature <222> (3)..(3) <223> g佔 10%,t佔 10%,a佔 10%且c佔70% <220〉 -11 - 142552-序列表.doc l>> > > 012 3 2222 2222 V V V < 201011047 <221> misc^feature <222> ¢7)..(8) <223> n為a ' c、g或t <220> <221> mi sc一feature <222> (9) "(9) <223> g及t以等莫耳比存在 <220> <221> mi sc一feature <222> (10)-.(11) <223> n為a、c、g或t <220> <221> mi sc一feature <222> (12)..(12) <223> g及t以等莫專比存在 <400> 33 nnnrttnnkn nkdggsta <210> 34 <211> 18 <212> DNA <213> 人造序列 <220> <223> 合成式序列 <220> <221> misc_feature <222> ⑴· ⑴ <223> g佔 70%,t佔 10%,a佔 10%且c佔 10% mi sc一 feature (2)..(2) g佔 10%,t佔 10%,a佔 70%且c佔 10% <220> <221> misc_feature <222> (3)..(3) <223> g佔 10%,t佔 10%,a佔 10%且c佔70% <220> <221> mi sc—feature <222> (7)..(8) <223> n爲a、c、g或t <220> <221> mi sc一feature <222> (9)..(9) <223> g反t以拿龛耳比存在 <220> <221> mi sc一feature <222> (10)·(11)<2 21> misc_feature <222> CIO)..¢11) <223> n is a, c, g salty <220><221> mi sc a feature <222> (12). .C12) <223> g and t exist in equal molar ratio <400> 32 nnnrttnnkn nktacsta <210> 33 <211> 18 <212> DNA <213> artificial sequence <220>< 223 > Synthetic sequence <220><221><222><223> mi sc a feature CD .. Cl) g accounted for 70%, t accounted for 10%, a accounted for 10% and c accounted for 10% <;220><221> mi sc-feature <222> (2)..(2) <223> 笆 10%, t accounted for 10%, a accounted for 70% and c accounted for 10% <220><221> misc-feature <222> (3)..(3) <223> g accounts for 10%, t accounts for 10%, a accounts for 10% and c accounts for 70% <220> -11 - 142552 - Sequence table.doc l>>>> 012 3 2222 2222 VVV < 201011047 <221> misc^feature <222> ¢7)..(8) <223> n is a 'c, g or t <220><221> mi sc a feature <222> (9) "(9) <223> g and t exist in equal molar ratio <220><221> a feature <2 22> (10)-.(11) <223> n is a, c, g or t <220><221> mi sc a feature <222> (12)..(12) <223> ; g and t are equal to the presence of <400> 33 nnnrttnnkn nkdggsta <210> 34 <211> 18 <212> DNA <213> artificial sequence <220><223> synthetic sequence<223>;220><221> misc_feature <222> (1)· (1) <223> g accounted for 70%, t accounted for 10%, a accounted for 10% and c accounted for 10% mi sc-feature (2)..(2) g accounts for 10%, t accounts for 10%, a accounts for 70% and c accounts for 10% <220><221> misc_feature <222> (3)..(3) <223> g accounts for 10%, t 10%, a is 10% and c is 70% <220><221> mi sc-feature <222> (7)..(8) <223> n is a, c, g or t <220><221> mi sc a feature <222> (9)..(9) <223> g anti-t is present in the ear-earth ratio <220><221> mi sc-feature < ;222> (10)·(11)
142552·序列表.doc 12- 201011047 <223> η為a、c、g或t <220> <221> mi sc一feature <222> (12)..(12) <223> gAt以等莫耳比存在 <220> <221> mi sc一feature <222> (13)..(13) <22B> n為a、c、gilt <400> 34 nnnrttnnkn nknmtsta 18 <210> 35 <211> 4 <212> PRT <213> 人造序列 <220> <223> 合成肽 <400> 35 val Asn 丁hr Ala 1142552· Sequence Listing.doc 12- 201011047 <223> η is a, c, g or t <220><221> mi sc-feature <222> (12)..(12) <223> gAt exists in equal molar ratio <220><221> mi sc-feature <222> (13)..(13) <22B> n is a, c, gilt <400> 34 nnnrttnnkn nknmtsta 18 <210> 35 <211> 4 <212> PRT <213> Artificial sequence <220><223> Synthetic peptide <400> 35 val Asn hr Ala 1
<210> 36 <211> 8 <212> PRT <213> 人造序列 <220> <223> 合成肽 <400> B6 lie Pro Arg Ser lie Ser Gly Tyr 1 5 <210> 37 <211> 4 <212> PRT <213> 人造序列 <220> <223> 合成肽 <400> 37<210> 36 <211> 8 <212> PRT <213> Artificial sequence <220><223> Synthetic peptide <400> B6 lie Pro Arg Ser lie Ser Gly Tyr 1 5 <210> 37 <211> 4 <212> PRT <213> Artificial sequence <220><223> Synthetic peptide <400> 37
Ser Ala ser Phe 1 <210> 38 <211> 4 <212> PRT <213>人造序列 -13 - U2552-序列表.doc 201011047 <220> <223>合成肽 <400> 38Ser Ala ser Phe 1 <210> 38 <211> 4 <212> PRT <213> artificial sequence-13 - U2552 - Sequence Listing.doc 201011047 <220><223> Synthetic peptide <400> 38
Trp Gly ser Tyr 1 <210> 39 <211> 9 <212> PRT <213> 人造序列 <220> <223> 合成肽 <400> 39Trp Gly ser Tyr 1 <210> 39 <211> 9 <212> PRT <213> Artificial sequence <220><223> Synthetic peptide <400>
Asp lie Pro Arg Ser lie Ser Gly Tyr <210> 40 <211> 6 <212> PRT <21B> 人造序列 <220> <223> 合成肽 <400> 40 Trp Gly ser Tyr Leu Tyr 1 <210> 41 <211> 6 <212> PRT <213> 人造序列 <220> <223> 合成肽 <400> 41 His Tyr Thr Thr Pro Pro 1 5 <210> 42 <211> 30 <212> PRT <213>人造序列"pp <211> Tyr 1 <210> 41 <211> 6 <212> PRT <213> Artificial sequence <220><223> Synthetic peptide <400> 41 His Tyr Thr Thr Pro Pro 1 5 <210> 42 <211> 30 <212> PRT <213> artificial sequence
<220> <223>合成狀 <400> 42<220><223>Synthesis<400> 42
Gin val Gin Leu val Gin Ser Gly Ala Glu val Lys Lys Pro Gly Ala 15 10 15 142552-序列表.doc -14- 201011047Gin val Gin Leu val Gin Ser Gly Ala Glu val Lys Lys Pro Gly Ala 15 10 15 142552 - Sequence Listing.doc -14- 201011047
Ser val Lys val ser Cys Lys Ala ser Gly Thr Phe Thr 20 25 30 <210> 43 <211> 14 <212> PRT <213>人造序列 <220> <223>合成肽 <40(h>· 43Ser val Lys val ser Cys Lys Ala ser Gly Thr Phe Thr 20 25 30 <210> 43 <211> 14 <212> PRT <213> Artificial sequence <220><223> Synthetic peptide <40 (h>· 43
Trp val Arg Gin Ala pro Gly Gin Gly Leu Glu Trp Met Gly 1 5 10 <210> 44 <211> 32 <212> PRT <213>人造序列Trp val Arg Gin Ala pro Gly Gin Gly Leu Glu Trp Met Gly 1 5 10 <210> 44 <211> 32 <212> PRT <213>
<220> <223>合成肽 <400> 44<220><223>Synthetic peptide <400> 44
Arcj val Thr1 lie Thr Ala Asp Thr Ser Thr ser Thr Ala Tyr Met Glu 1 5 l〇 15Arcj val Thr1 lie Thr Ala Asp Thr Ser Thr ser Thr Ala Tyr Met Glu 1 5 l〇 15
Leu Ser Ser Leu Arg Se「 Glu Asp Th「 Ala Val Tyr Tyr Cys Ala Arg 20 25 30 <210> 45 <211> 11 <212> PRT <213>人造序列 <220> <223>合成肽 <400> 45 T「p Gly Gin Gly Th「 Leu val Th「 val se「 ser <210> 46 <211> 25 <212> PRT <213> 人造序列 <220> <223>合成肽 <400> 46Leu Ser Ser Leu Arg Se "Glu Asp Th" Ala Val Tyr Tyr Cys Ala Arg 20 25 30 <210> 45 <211> 11 <212> PRT <213> artificial sequence <220><223> Synthetic peptide <400> 45 T "p Gly Gin Gly Th" Leu val Th "val se "ser <210> 46 <211> 25 <212> PRT <213> artificial sequence <220><223>Synthetic peptide <400> 46
Gin val Gin Leu val Gin ser Gly Ala Glu val Lys Lys Pro Gly Ala 142552-序列表.doc -15- 201011047 10 15Gin val Gin Leu val Gin ser Gly Ala Glu val Lys Lys Pro Gly Ala 142552 - Sequence Listing.doc -15- 201011047 10 15
Ser val Lys val ser Cys Lys Ala Ser 20 25 <210> 47 <211> 13 <212> PRT <213>人造序列 <220> <223>合成肽 <400> 47Ser val Lys val ser Cys Lys Ala Ser 20 25 <210> 47 <211> 13 <212> PRT <213> artificial sequence <220><223> synthetic peptide <400>
Trp Val Arg Gin Ala Pro Gly Gin Gly Leu Glu Trp Met I S 10 <210> 48 <211> 31 <212> PRT <213> 人造序列 <220> <223>合成肽 <400> 48Trp Val Arg Gin Ala Pro Gly Gin Gly Leu Glu Trp Met IS 10 <210> 48 <211> 31 <212> PRT <213> Artificial Sequence <220><223> Synthetic Peptide <400> 48
Arg val Thr lie Thr Ala Asp Thr Ser Thr ser Thr Ala Tyr Met Glu 1 5 l〇 15Arg val Thr lie Thr Ala Asp Thr Ser Thr ser Thr Ala Tyr Met Glu 1 5 l〇 15
Leu Ser Ser Leu Arg ser Glu Asp Thr Ala Val Tyr Tyr cys Ala 20 25 BO <210> 49 <211> 30 <212> PRT <213> 人造序列 <220> <223> 合成肽 <400> 49Leu Ser Ser Leu Arg ser Glu Asp Thr Ala Val Tyr Tyr cys Ala 20 25 BO <210> 49 <211> 30 <212> PRT <213> Artificial sequence <220><223> Synthetic peptide <;400> 49
Arg val Thr lie Thr Ala Asp Thr Ser Thr ser Thr Ala Tyr Met Glu 1 5 l〇 15Arg val Thr lie Thr Ala Asp Thr Ser Thr ser Thr Ala Tyr Met Glu 1 5 l〇 15
Leu ser ser Leu Arg Ser Glu Asp Thr Ala val Tyr Tyr cvs 20 25 30 <210> 50 <211> 30 <212> PRT <213> 人造序列 <220> 142552-序列表.doc -16- 201011047 <223>合成肽 <400> 50Leu ser ser Leu Arg Ser Glu Asp Thr Ala val Tyr Tyr cvs 20 25 30 <210> 50 <211> 30 <212> PRT <213> Artificial sequence <220> 142552 - Sequence Listing.doc -16 - 201011047 <223>Synthetic peptide <400> 50
Gin val Gin Leu Gin Glu Ser Gly Pro Gly Leu Val Lys pro Ser Gin 15 10 15Gin val Gin Leu Gin Glu Ser Gly Pro Gly Leu Val Lys pro Ser Gin 15 10 15
Thr Leu ser Leu Thr Cys Thr Val Ser Gly Gly Ser Val Ser 20 25 30 <210> 51 <211> 14 <212> PRT <213> 人造序列 <220> <223>合成肽 <400> 51Thr Leu ser Leu Thr Cys Thr Val Ser Gly Gly Ser Val Ser 20 25 30 <210> 51 <211> 14 <212> PRT <213> Artificial Sequence <220><223> Synthetic Peptide<400> 51
Trp lie Arg Gin Pro Pro Gly Lys Gly Leu Glu Trp lie Gly 1 5 10 <210> 52 <211> 32 <212> PRT <213> 人造序列 <220> , <223>合成肽 <400> 52Trp lie Arg Gin Pro Pro Gly Lys Gly Leu Glu Trp lie Gly 1 5 10 <210> 52 <211> 32 <212> PRT <213> Artificial sequence <220>, <223> Synthetic peptide <;400> 52
Arg Val Thr He Ser Val Asp Thr Ser Lys Asn Gin Phe ser Leu Lys 15 10 15Arg Val Thr He Ser Val Asp Thr Ser Lys Asn Gin Phe ser Leu Lys 15 10 15
Leu Ser Ser Val Thr Ala Ala Asp Thr Ala val Tyr Tyr Cys Ala Arg 20 25 30 %<211> 25 <212> PRT <213> 人造序列 <220> <223>合成肽 <400> 53Leu Ser Ser Val Thr Ala Ala Asp Thr Ala val Tyr Tyr Cys Ala Arg 20 25 30 % <211> 25 <212> PRT <213> Artificial Sequence <220><223> Synthetic Peptide <400> 53
Gin Val Gin Leu Gin Glu Ser Gly Pro Gly Leu val Lys Pro Ser Gin 15 10 15Gin Val Gin Leu Gin Glu Ser Gly Pro Gly Leu val Lys Pro Ser Gin 15 10 15
Thr Leu Ser Leu Thr Cys Thr val Ser 20 25 <210> 54 142552-序列表.doc -17- 201011047 <211> 13 <212> PRT <213> 人造序列 <220> <223>合成肽 <400> 54Thr Leu Ser Leu Thr Cys Thr val Ser 20 25 <210> 54 142552 - Sequence Listing.doc -17- 201011047 <211> 13 <212> PRT <213> Artificial Sequence <220><223> Synthetic peptide <400> 54
Trp lie Arg Gin Pro Pro Gly Lys Gly Leu Glu Trp lie 1 5 10 <210> 55 <211> 31 <212> PRT <213> 人造序列 <220> <223> 合成狀 <400> 55Trp lie Arg Gin Pro Pro Gly Lys Gly Leu Glu Trp lie 1 5 10 <210> 55 <211> 31 <212> PRT <213> Artificial sequence <220><223> Synthetic <400>; 55
Arg Vat Thr lie Ser val Asp Thr ser Lys Asn Gin Phe Ser Leu Lys 15 10 15Arg Vat Thr lie Ser val Asp Thr ser Lys Asn Gin Phe Ser Leu Lys 15 10 15
Leu Ser Ser val Thr Ala Ala Asp Thr Ala val Tyr Tyr Cys Ala 20 25 30 <210> 56 <211> 30 <212> PRT <213> 人造序列 <220> <223>合成肽 <400> 56Leu Ser Ser val Thr Ala Ala Asp Thr Ala val Tyr Tyr Cys Ala 20 25 30 <210> 56 <211> 30 <212> PRT <213> Artificial Sequence <220><223> Synthetic Peptide<223>;400> 56
Arg val Thr lie ser val Asp Thr Ser Lys Asn Gin Phe Ser Leu Lys 15 10 15Arg val Thr lie ser val Asp Thr Ser Lys Asn Gin Phe Ser Leu Lys 15 10 15
Leu Ser ser val Thr Ala Ala Asp Thr Ala val Tyr Tyr cys 20 25 BO <210> 57 <211> 30 <212> PRT <213> 人造序列 <220> <223>合成肽 <400> 57Leu Ser ser val Thr Ala Ala Asp Thr Ala val Tyr Tyr cys 20 25 BO <210> 57 <211> 30 <212> PRT <213> Artificial sequence <220><223> Synthetic peptide <400> 57
Glu val Gin Leu val Glu Ser Gly Gly Gly Leu val Gin Pro Gly Gly 15 10 15 142552-序列表.doc -18- 201011047 se, Leu ΛΓ9,eU se, Cvs Ala A1a Sf ^ -e Th. PHe Ser <210> 58 <211> 14Glu val Gin Leu val Glu Ser Gly Gly Gly Leu val Gin Pro Gly Gly 15 10 15 142552 - Sequence Listing.doc -18- 201011047 se, Leu ΛΓ9, eU se, Cvs Ala A1a Sf ^ -e Th. PHe Ser <210> 58 <211> 14
<212> PRT <213>人造序列 · <220> <223>合成肽 <400> 58<212> PRT <213> artificial sequence · <220><223> synthetic peptide <400>
Trp val Arg Gin Ala Pro Gly Lys Gly Glu Trp val Ser <210> 59 <211> 32 <212> PRT <213> 人造序列Trp val Arg Gin Ala Pro Gly Lys Gly Glu Trp val Ser <210> 59 <211> 32 <212> PRT <213>
<220> <223> 合成肽 <400> 59<220><223> Synthetic peptide <400> 59
Arg Phe Thr lie Ser Arg Asp Asn Ser L^s Asn Thr Leu Tyr Leu GinArg Phe Thr lie Ser Arg Asp Asn Ser L^s Asn Thr Leu Tyr Leu Gin
Cys Ala ArgCys Ala Arg
Met Asn ser Leu Arg Ala du Asp Thr A!a VaT Tyr Tyr <210> 60 <211> 25 <212> PRT <213> 人造序列 <220> <223> 合成肽 <400> 60Met Asn ser Leu Arg Ala du Asp Thr A!a VaT Tyr Tyr <210> 60 <211> 25 <212> PRT <213> Artificial sequence <220><223> Synthetic peptide <400> 60
Glu val Gin Leu val Glu ser Gly Gly Gly Leu val Gin Pro Gly Gly ser Leu Arg Leu Ser Cys Ala Ala ser 20 25 <210> 61 <211> 13 <212> PRT <213> 人造序列 <220> <223>合成肽 <400> 61 142552-序列表.doc -19- 201011047Glu val Gin Leu val Glu ser Gly Gly Gly Leu val Gin Pro Gly Gly ser Leu Arg Leu Ser Cys Ala Ala ser 20 25 <210> 61 <211> 13 <212> PRT <213> Artificial sequence<220><223>Synthetic peptide <400> 61 142552 - Sequence Listing.doc -19- 201011047
Trp val Arg Gin Ala Pro Gly Lys Gly Leu Glu Trp val 1 5 10 <210> 62 <211> 31 <212> PRT <213>人造序列 <220> <223>合成狀 <400> 62Trp val Arg Gin Ala Pro Gly Lys Gly Leu Glu Trp val 1 5 10 <210> 62 <211> 31 <212> PRT <213>artificial sequence<220><223>Synthesis<400>; 62
Arg Phe Thr lie Ser Arg Asp Asn Ser Lys Asn Thr Leu Tyr Leu f;in 1 5 10 15Arg Phe Thr lie Ser Arg Asp Asn Ser Lys Asn Thr Leu Tyr Leu f;in 1 5 10 15
Met Asn Ser Leu Arg Ala Glu Asp Thr Ala Val Tyr Tyr cys Ala 20 25 B〇 <210> 63 <211> 30 <212> PRT <213> 人造序列 <220> <223>合成肽 <400> 63Met Asn Ser Leu Arg Ala Glu Asp Thr Ala Val Tyr Tyr cys Ala 20 25 B〇<210> 63 <211> 30 <212> PRT <213> Artificial Sequence <220><223> Synthetic Peptide <400> 63
Arg Phe Thr lie Ser Arg Asp Asn Ser Lys Asn Thr Leu Tyr Leu Gin 15 10 15Arg Phe Thr lie Ser Arg Asp Asn Ser Lys Asn Thr Leu Tyr Leu Gin 15 10 15
Met Asn Ser Leu Arg Ala Glu Asp Thr Ala Val Tyr Tyr Cys 20 25 30 <210> 64 <211> 30 <212> PRT <213> 人造序列 <220> <223> 合成肽 <400> 64Met Asn Ser Leu Arg Ala Glu Asp Thr Ala Val Tyr Tyr Cys 20 25 30 <210> 64 <211> 30 <212> PRT <213> Artificial Sequence <220><223> Synthetic Peptide<400> 64
Glu val Gin Leu Val Glu Ser Gly Gly Gly Leu val Gin Pro Gly Gly 15 10 15 ser Leu Arg Leu Ser cys Ala Ala ser Gly Phe Asn lie Lys 20 25 30 <210> 65 <211> 32 <212> PRT <213> 人造序列 142552-序列表.doc -20- 201011047 <220> <223>合成肽 <400> 65Glu val Gin Leu Val Glu Ser Gly Gly Gly Leu val Gin Pro Gly Gly 15 10 15 ser Leu Arg Leu Ser cys Ala Ala ser Gly Phe Asn lie Lys 20 25 30 <210> 65 <211> 32 <212> PRT <213> Artificial sequence 142552 - Sequence Listing. doc -20- 201011047 <220><223>Synthetic peptide <400> 65
Arg Phe Thr lie Ser Ala Asp Thr Ser lys Asn Thr· Ala Tyr Leu Gin 1 5 l〇 15Arg Phe Thr lie Ser Ala Asp Thr Ser lys Asn Thr· Ala Tyr Leu Gin 1 5 l〇 15
Met Asn ser # Arg Ala Glu asp # A vd Tyr Tyr 欲 ser Arg <210> 66 <211> 31 <212> PRT <213>人造序列 <220> <223>合成肽 <400> 66Met Asn ser # Arg Ala Glu asp # A vd Tyr Tyr want ser Arg <210> 66 <211> 31 <212> PRT <213> artificial sequence <220><223> synthetic peptide <400>; 66
Arg Phe Thr lie Ser Ala Asp Thr Ser Lys Asn Thr Ala Tyr Leu Gin 1 5 l〇 isArg Phe Thr lie Ser Ala Asp Thr Ser Lys Asn Thr Ala Tyr Leu Gin 1 5 l〇 is
Met Asn Ser Leu Arg Ala Glu Asp Thr Ala val Typ Tyr Cys Ser 20 25 3〇 <210> 67 <211> 32 <212> PRT <213>人造序列 <220> <223>舍成肽 <400> 67 15Met Asn Ser Leu Arg Ala Glu Asp Thr Ala val Typ Tyr Cys Ser 20 25 3〇<210> 67 <211> 32 <212> PRT <213> artificial sequence <220><223> Peptide <400> 67 15
Arg Phe Thr lie !e「Ala Asp Thr Ser 技s Asr> Thr Ala Tyr Leu GinArg Phe Thr lie !e"Ala Asp Thr Ser s Asr> Thr Ala Tyr Leu Gin
Met Asn Ser Leu Arg Ala Glu Asp Thr Ala val Tyr Tyr 20 25Met Asn Ser Leu Arg Ala Glu Asp Thr Ala val Tyr Tyr 20 25
Cys Ala Arg <210> 68 <211> 31 <212> PRT <213>人造序列 <220> <223> 合成肽 <400> 68Cys Ala Arg <210> 68 <211> 31 <212> PRT <213> artificial sequence <220><223> synthetic peptide <400>
Arg Phe Thr lie Ser Ala Asp Thr Ser Lys Asn Thr Ala Tyr Leu Gin 15 10 15 142552-序列表.doc •21- 201011047Arg Phe Thr lie Ser Ala Asp Thr Ser Lys Asn Thr Ala Tyr Leu Gin 15 10 15 142552 - Sequence Listing.doc •21- 201011047
Met Asn ser Leu Arg Ala Glu Asp Thr Ala val Tyr Tyr cvs Ala 20 25 30 <210> 69 <211> 30 <212> PRT <213> 人造序列 <220> <223>合成肽 <400> 69ET Ala Glu Asp Thr Ala val Tyr Tyr cvs Ala 20 25 30 <210>;400> 69
Arg Phe Thr lie Ser Ala Asp Thr Ser Lys Asn Thr Ala Tyr Leu Gin 15 10 15Arg Phe Thr lie Ser Ala Asp Thr Ser Lys Asn Thr Ala Tyr Leu Gin 15 10 15
Met Asn Ser Leu Arg Ala Glu Asp Thr Ala val Tyr Tyr Cys 20 25 30 <210> 70Met Asn Ser Leu Arg Ala Glu Asp Thr Ala val Tyr Tyr Cys 20 25 30 <210> 70
<211> 23 <212> PRT <213> 人造序列 <220> <223>合成肽 <400> 70<211> 23 <212> PRT <213> Artificial sequence <220><223> Synthetic peptide <400> 70
Asp lie Gin Met Thr Gin Ser Pro Ser Ser Leu Ser Ala ser val Gly 15 10 15Asp lie Gin Met Thr Gin Ser Pro Ser Ser Leu Ser Ala ser val Gly 15 10 15
Asp Arg val Thr lie Thr Cys 20 <210> 71 <211> 15 <212> PRT <213> 人造序列Asp Arg val Thr lie Thr Cys 20 <210> 71 <211> 15 <212> PRT <213>
<220> <223> 合成肽 <400> 71<220><223> Synthetic peptide <400> 71
TrD Tyr Gin Gin Lys Pro Gly Lys Ala Pro Lys Leu Leu lie Tyr 1 5 10 15 <210> 72 <211> 32 <212> PRT <213>人造序列 <220> <223>合成肽 142552-序列表.doc -22- 201011047 <400> 72TrD Tyr Gin Gin Lys Pro Gly Lys Ala Pro Lys Leu Leu lie Tyr 1 5 10 15 <210> 72 <211> 32 <212> PRT <213> Artificial Sequence <220><223> 142552-Sequence List.doc -22- 201011047 <400> 72
Gly Val Pro Ser Arg Phe Ser Gly Ser Gly Ser Gly Thr Asp Phe Thr 15 10 15Gly Val Pro Ser Arg Phe Ser Gly Ser Gly Ser Gly Thr Asp Phe Thr 15 10 15
Leu Thr lie ser Ser Leu Gin Pro Glu Asp Phe Ala Thr Tyr Tyr cys 20 25 30 <210> 73 <211> 10 <212> PRT <213>人造序列 <220> <223>合成肽 <400> 73Leu Thr lie ser Ser Leu Gin Pro Glu Asp Phe Ala Thr Tyr Tyr cys 20 25 30 <210> 73 <211> 10 <212> PRT <213> artificial sequence <220><223><400> 73
Phe Gly Gin Gly Thr Lys Val Glu lie Lys 15 10Phe Gly Gin Gly Thr Lys Val Glu lie Lys 15 10
<210> 74 <211> 23 <212> PRT <213>人造序列 <220> <223>合成肽 <400> 74<210> 74 <211> 23 <212> PRT <213> artificial sequence <220><223> synthetic peptide <400> 74
Asp lie val Met Thr Gin ser Pro Leu Ser Leu Pro val Thr pro Gly 15 10 15Asp lie val Met Thr Gin ser Pro Leu Ser Leu Pro val Thr pro Gly 15 10 15
Glu Pro Ala Ser lie Ser Cys 20 <210> 75 <211> 15 <212> PRT <213> 人造序列 <220> <223> 合成肽 <400> 75Glu Pro Ala Ser lie Ser Cys 20 <210> 75 <211> 15 <212> PRT <213> Artificial sequence <220><223> Synthetic peptide <400>
Trp Tyr Leu Gin Lys Pro Gly Gin Ser Pro Gin Leu Leu lie Tyr 15 10 15 <210> 76 <211> B2 <212> PRT <213> 人造序列 <220> <223>合成肽 142552-序列表.doc -23- 201011047 <400> 76Trp Tyr Leu Gin Lys Pro Gly Gin Ser Pro Gin Leu Leu lie Tyr 15 10 15 <210> 76 <211> B2 <212> PRT <213> Artificial Sequence <220><223> Synthetic Peptide 142552 - Sequence Listing.doc -23- 201011047 <400> 76
Gly val Pro Asp Arg Phe ser Gly ser Gly Ser Gly Thr Asp phe Thr 1 5 10 15Gly val Pro Asp Arg Phe ser Gly ser Gly Ser Gly Thr Asp phe Thr 1 5 10 15
Leu Lys lie ser Arg val Glu Ala Glu Asp val Gly val Tyr Tyr cys 20 25 30 <210> 77 <211> 23 <212> PRT <213>人造序列 <220> <223> 合成狀 <400> 77Leu Lys lie ser Arg val Glu Ala Glu Asp val Gly val Tyr Tyr cys 20 25 30 <210> 77 <211> 23 <212> PRT <213> artificial sequence <220><223><400> 77
Glu lie val Leu Thr Gin Ser Pro Gly Thr Leu ser Leu Ser pro Gly 15 10 15Glu lie val Leu Thr Gin Ser Pro Gly Thr Leu ser Leu Ser pro Gly 15 10 15
Glu Arg Ala Thr Leu ser Cys 20 <210> 78 <211> 15 <212> PRT <213> 人造序列 <220> <223>合成肽 <400> 78Glu Arg Ala Thr Leu ser Cys 20 <210> 78 <211> 15 <212> PRT <213> Artificial sequence <220><223> Synthetic peptide <400>
Trp Tyr Gin Gin Lys Pro Gly Gin AT a Pro Arg Leu Leu lie Tyr <210> 79 <211> 32Trp Tyr Gin Gin Lys Pro Gly Gin AT a Pro Arg Leu Leu lie Tyr <210> 79 <211> 32
<212> PRT <213>人造序列 <220> <223> 合成肽 <400> 79<212> PRT <213> artificial sequence <220><223> synthetic peptide <400>
Gly He Pro Asp Arg Phe ser Gly Gly sen Gly Thr Asp Phe Thr , i , . . m.. Glu Asp Phe Ala val Tyr Tyr cysGly He Pro Asp Arg Phe ser Gly Gly sen Gly Thr Asp Phe Thr , i , . . m.. Glu Asp Phe Ala val Tyr Tyr cys
Leu Thr lie Ser Arg Leu Glu Pr° a〇 J 7 20 口 <210> 80 <211> 23 142552·序列表.doc 201011047 <212> PRT <213> 人造序列 <220> <223>合成肽 <400> 80 Asp lie Val Met Thr Gin Ser pro Asp Ser Leu Ala Val Ser Leu Gly 15 10 15Leu Thr lie Ser Arg Leu Glu Pr° a〇J 7 20 mouth <210> 80 <211> 23 142552 · Sequence Listing.doc 201011047 <212> PRT <213> Artificial Sequence <220><223> Synthetic peptide <400> 80 Asp lie Val Met Thr Gin Ser pro Asp Ser Leu Ala Val Ser Leu Gly 15 10 15
Glu Arg Ala Thr lie Asn Cys 20 m <210> 81 <211> 15 <212> PRT <213> 人造序列 <220> <223>合成構築體 <400> 81 Trp Tyr Gin Gin Lys Pro Gly Gin Pro Pro Lys Leu Leu lie Tyt 15 10 15 <210> 82 <211> 32 <212> PRT <2lJ> 人造序列 <220> <223>合成肽 <400> 82 Gly val Pro Asp Arg Phe Ser Gly Ser Gly ser Gly Thr Asp Phe Thr 15 10 15 Leu Thr He Ser ser Leu Gin Ala Glu Asp Val Ala val Tyr Tyr Cys 20 25 30 <210> 83 <211> 10 <212> PRT <213> 人造序列 <220> <223>合成式序列 ^^Λ > 2222 2222 V V V < MISC_FEATURE(1)..(1) Xaa為除Asp以外之任何胺基酸 <220> 142552-序列表.doc 25- 201011047 <221> MISC_FEATURE <222> (3)..(3) <223> Xaa為除Pro以外之任何胺基酸 <220> <221> MISCL.FEATURE <222> (4)..(4) <223> Xaa為除Arg以外之任何胺基酸 <220> <221> MISC_FEATURE <222> (5).·(5) <223> Xaa為除Ser以外之任何胺基酸 <220> <221> MISC_FEATURE <222> (6)··C9) <223> Xaa為任何胺基酸 <400> 83 xaa lie Xaa xaa Xaa xaa xaa xaa xaa Tyr 15 10 <210> 84 <211> 10 <212> PRT <213> 人造序列 <220> <223>合成式序列 <220> <221> MISC_FEATURE <222> (2)..(9) <223> Xaa為任何胺基酸 <400> 84Glu Arg Ala Thr lie Asn Cys 20 m <210> 81 <211> 15 <212> PRT <213> Artificial Sequence <220><223> Synthetic Construct <400> 81 Trp Tyr Gin Gin Lys Pro Gly Gin Pro Pro Lys Leu Leu lie Tyt 15 10 15 <210> 82 <211> 32 <212> PRT <2lJ> Artificial Sequence <220><223> Synthetic Peptide <400> Gly val Pro Asp Arg Phe Ser Gly Ser Gly ser Gly Thr Asp Phe Thr 15 10 15 Leu Thr He Ser ser Leu Gin Ala Glu Asp Val Ala val Tyr Tyr Cys 20 25 30 <210> 83 <211> 10 <212> PRT <213> artificial sequence <220><223> synthetic sequence ^^Λ > 2222 2222 VVV < MISC_FEATURE(1)..(1) Xaa is any amino acid other than Asp <;220> 142552-Sequence List.doc 25- 201011047 <221> MISC_FEATURE <222> (3)..(3) <223> Xaa is any amino acid other than Pro <220><221>; MISCL.FEATURE <222> (4)..(4) <223> Xaa is any amino acid other than Arg <220><221> MISC_FEATURE <222> (5). ) ≪223> Xaa is any amino acid other than Ser <220><221> MISC_FEATURE <222> (6)··C9) <223> Xaa is any amino acid <400> 83 xaa Lie Xaa xaa Xaa xaa xaa xaa xaa Tyr 15 10 <210> 84 <211> 10 <212> PRT <213> Artificial sequence <220><223> Synthetic sequence <220><221>; MISC_FEATURE <222> (2)..(9) <223> Xaa is any amino acid <400> 84
Arg xaa xaa Xaa xaa Xaa xaa Xaa xaa Arg 15 10 <210> 85 <211> 10 <212> PRT <213> 人造序列 <220> <22 3> 合成式序列 <220> <221> MISC—FEATURE <222> (2)..(4) <22B> Xaa為任何胺基酸 <220> <221> MISC_FEATURE <222> (5)··(5) <223> Xaa為除Thr以外之任何胺基酸 26- 142552-序列表.doc 201011047 <220> <22X> MISCUFEATURE <222> (6)..(6) <223> Xaa為系Asn以外之任何胺基酸 <220> <221> MISC_FEATURE <222> (7〕..(9) <223> Xaa為任何胺基酸 <400> 85Arg xaa xaa Xaa xaa Xaa xaa Xaa xaa Arg 15 10 <210> 85 <211> 10 <212> PRT <213> Artificial sequence <220><223> Synthetic sequence <220>;221> MISC-FEATURE <222> (2)..(4) <22B> Xaa is any amino acid <220><221> MISC_FEATURE <222> (5)·(5) <;223> Xaa is any amino acid other than Thr 26- 142552 - Sequence Listing. doc 201011047 <220><22X> MISCUFEATURE <222> (6)..(6) <223> Xaa is a system Any amino acid other than Asn <220><221> MISC_FEATURE <222> (7)..(9) <223> Xaa is any amino acid <400>
Arg Xaa Xaa Xaa xaa xaa xaa Xaa xaa Arg 15 10Arg Xaa Xaa Xaa xaa xaa xaa Xaa xaa Arg 15 10
-27- 142552-序列表.doc-27- 142552 - Sequence Listing.doc
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US9017686B2 (en) | 2015-04-28 |
AU2009288167A1 (en) | 2010-03-11 |
JP2012501648A (en) | 2012-01-26 |
PE20110593A1 (en) | 2011-09-10 |
CN102143977A (en) | 2011-08-03 |
AU2009288167B2 (en) | 2015-10-22 |
PE20150222A1 (en) | 2015-03-02 |
CN102143977B (en) | 2014-08-06 |
JP5796831B2 (en) | 2015-10-21 |
US20150315290A1 (en) | 2015-11-05 |
US9522960B2 (en) | 2016-12-20 |
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RU2547596C2 (en) | 2015-04-10 |
PH12013502230A1 (en) | 2016-01-25 |
MX2011002389A (en) | 2011-05-23 |
WO2010027981A1 (en) | 2010-03-11 |
EP2324061B1 (en) | 2017-04-12 |
KR101705911B1 (en) | 2017-02-10 |
US20100322946A1 (en) | 2010-12-23 |
IL211349A0 (en) | 2011-05-31 |
EP2324061A1 (en) | 2011-05-25 |
US20110142852A1 (en) | 2011-06-16 |
RU2011112324A (en) | 2012-10-10 |
CA2734905A1 (en) | 2010-03-11 |
ZA201101970B (en) | 2012-05-30 |
KR20110081812A (en) | 2011-07-14 |
ES2628108T3 (en) | 2017-08-01 |
MX353984B (en) | 2017-11-27 |
BRPI0918648A2 (en) | 2019-09-03 |
TWI487712B (en) | 2015-06-11 |
SG193851A1 (en) | 2013-10-30 |
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