NZ624366B2 - Novel purine derivatives and their use in the treatment of disease - Google Patents
Novel purine derivatives and their use in the treatment of disease Download PDFInfo
- Publication number
- NZ624366B2 NZ624366B2 NZ624366A NZ62436612A NZ624366B2 NZ 624366 B2 NZ624366 B2 NZ 624366B2 NZ 624366 A NZ624366 A NZ 624366A NZ 62436612 A NZ62436612 A NZ 62436612A NZ 624366 B2 NZ624366 B2 NZ 624366B2
- Authority
- NZ
- New Zealand
- Prior art keywords
- methyl
- purine
- morpholinyl
- morpholin
- pharmaceutically acceptable
- Prior art date
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- 229940083251 peripheral vasodilators Purine derivatives Drugs 0.000 title description 5
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- 125000002306 tributylsilyl group Chemical group C(CCC)[Si](CCCC)(CCCC)* 0.000 description 1
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- MSRILKIQRXUYCT-UHFFFAOYSA-M valproate semisodium Chemical compound [Na+].CCCC(C(O)=O)CCC.CCCC(C([O-])=O)CCC MSRILKIQRXUYCT-UHFFFAOYSA-M 0.000 description 1
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- KDQAABAKXDWYSZ-JKDPCDLQSA-N vincaleukoblastine sulfate Chemical compound OS(O)(=O)=O.C([N@]1C[C@@H](C[C@]2(C(=O)OC)C=3C(=CC4=C([C@]56[C@H]([C@@]([C@H](OC(C)=O)[C@]7(CC)C=CCN([C@H]67)CC5)(O)C(=O)OC)N4C)C=3)OC)C[C@@](C1)(O)CC)CC1=C2NC2=CC=CC=C12 KDQAABAKXDWYSZ-JKDPCDLQSA-N 0.000 description 1
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Classifications
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- A61K31/00—Medicinal preparations containing organic active ingredients
- A61K31/33—Heterocyclic compounds
- A61K31/395—Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins
- A61K31/535—Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins having six-membered rings with at least one nitrogen and one oxygen as the ring hetero atoms, e.g. 1,2-oxazines
- A61K31/5375—1,4-Oxazines, e.g. morpholine
- A61K31/5377—1,4-Oxazines, e.g. morpholine not condensed and containing further heterocyclic rings, e.g. timolol
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- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
- A61K31/00—Medicinal preparations containing organic active ingredients
- A61K31/33—Heterocyclic compounds
- A61K31/395—Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins
- A61K31/55—Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins having seven-membered rings, e.g. azelastine, pentylenetetrazole
- A61K31/553—Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins having seven-membered rings, e.g. azelastine, pentylenetetrazole having at least one nitrogen and one oxygen as ring hetero atoms, e.g. loxapine, staurosporine
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- A—HUMAN NECESSITIES
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- A61P25/00—Drugs for disorders of the nervous system
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- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
- A61P25/00—Drugs for disorders of the nervous system
- A61P25/28—Drugs for disorders of the nervous system for treating neurodegenerative disorders of the central nervous system, e.g. nootropic agents, cognition enhancers, drugs for treating Alzheimer's disease or other forms of dementia
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- A—HUMAN NECESSITIES
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- A61P27/02—Ophthalmic agents
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- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
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- A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
- A61P43/00—Drugs for specific purposes, not provided for in groups A61P1/00-A61P41/00
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- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07D—HETEROCYCLIC COMPOUNDS
- C07D473/00—Heterocyclic compounds containing purine ring systems
- C07D473/02—Heterocyclic compounds containing purine ring systems with oxygen, sulphur, or nitrogen atoms directly attached in positions 2 and 6
- C07D473/16—Heterocyclic compounds containing purine ring systems with oxygen, sulphur, or nitrogen atoms directly attached in positions 2 and 6 two nitrogen atoms
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- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07D—HETEROCYCLIC COMPOUNDS
- C07D487/00—Heterocyclic compounds containing nitrogen atoms as the only ring hetero atoms in the condensed system, not provided for by groups C07D451/00 - C07D477/00
- C07D487/02—Heterocyclic compounds containing nitrogen atoms as the only ring hetero atoms in the condensed system, not provided for by groups C07D451/00 - C07D477/00 in which the condensed system contains two hetero rings
- C07D487/04—Ortho-condensed systems
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- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07D—HETEROCYCLIC COMPOUNDS
- C07D491/00—Heterocyclic compounds containing in the condensed ring system both one or more rings having oxygen atoms as the only ring hetero atoms and one or more rings having nitrogen atoms as the only ring hetero atoms, not provided for by groups C07D451/00 - C07D459/00, C07D463/00, C07D477/00 or C07D489/00
- C07D491/02—Heterocyclic compounds containing in the condensed ring system both one or more rings having oxygen atoms as the only ring hetero atoms and one or more rings having nitrogen atoms as the only ring hetero atoms, not provided for by groups C07D451/00 - C07D459/00, C07D463/00, C07D477/00 or C07D489/00 in which the condensed system contains two hetero rings
- C07D491/04—Ortho-condensed systems
- C07D491/044—Ortho-condensed systems with only one oxygen atom as ring hetero atom in the oxygen-containing ring
- C07D491/048—Ortho-condensed systems with only one oxygen atom as ring hetero atom in the oxygen-containing ring the oxygen-containing ring being five-membered
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- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07D—HETEROCYCLIC COMPOUNDS
- C07D491/00—Heterocyclic compounds containing in the condensed ring system both one or more rings having oxygen atoms as the only ring hetero atoms and one or more rings having nitrogen atoms as the only ring hetero atoms, not provided for by groups C07D451/00 - C07D459/00, C07D463/00, C07D477/00 or C07D489/00
- C07D491/02—Heterocyclic compounds containing in the condensed ring system both one or more rings having oxygen atoms as the only ring hetero atoms and one or more rings having nitrogen atoms as the only ring hetero atoms, not provided for by groups C07D451/00 - C07D459/00, C07D463/00, C07D477/00 or C07D489/00 in which the condensed system contains two hetero rings
- C07D491/10—Spiro-condensed systems
- C07D491/107—Spiro-condensed systems with only one oxygen atom as ring hetero atom in the oxygen-containing ring
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- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07D—HETEROCYCLIC COMPOUNDS
- C07D519/00—Heterocyclic compounds containing more than one system of two or more relevant hetero rings condensed among themselves or condensed with a common carbocyclic ring system not provided for in groups C07D453/00 or C07D455/00
Abstract
The disclosure relates to PI3K inhibitors of the formula (I) in which all of the variables are as defined in the specification, to their preparation, to their medical use, in particular to their use in the treatment of cancer and neurodegenerative disorders, and to medicaments comprising them. A representative purine derivative is: 8-(6-Fluoro-1H-indol-4-yl)-2-((S)-3-methylmorpholin-4-yl)-6-((R)-3-methyl-morpholin-4-yl)-9H-purine. resentative purine derivative is: 8-(6-Fluoro-1H-indol-4-yl)-2-((S)-3-methylmorpholin-4-yl)-6-((R)-3-methyl-morpholin-4-yl)-9H-purine.
Description
Novel Purine Derivatives and their Use in the ent of Disease
Field of the Invention
The invention relates to purine derivatives and ceutically acceptable salts thereof,
processes for their preparation, their use in the treatment of diseases, their use, either alone
or in combination with at least one additional therapeutic agent and optionally in combination
with a pharmaceutically acceptable carrier, for the manufacture of pharmaceutical
ations, use of the pharmaceutical preparations for the treatment of diseases, and a
method of treatment of said diseases, comprising administering the purine derivatives to a
warm-blooded animal, especially a human.
Background of the Invention
The phosphatidylinositolkinases superfamily comprises 4 different PI3K d lipid or
protein kinases. Class I, II and III are lipid kinases that differ by virtue of their substrate
specificities whereas class IV Pl3Ks (also called PlKKs) are protein kinases. Class |
phosphatidylinositol—S-kinases comprise a family of lipid kinases that catalyze the er of
phosphate to the D'—3' position of inositol lipids to produce phosphoinositolphosphate
(PIP), phosphoinositol-3,4-diphosphate (Ple) and oinositol-3,4,5—triphosphate (PIP3)
that, in turn, act as second messengers in signaling cascades by docking proteins containing
pleckstrin-homology, FYVE, Phox and other phospholipid-binding domains into a variety of
signaling complexes often at the plasma membrane ((Vanhaesebroeck et al., Annu. Rev.
Biochem 70:535 (2001); Katso et al., Annu. Rev. Cell Dev. Biol. 172615 (2001)). Of the two
Class I Pl3Ks, Class IA Pl3Ks are dimers composed of a catalytic p110 subunit (Cl [3, 6,
isoforms) constitutively associated with a regulatory subunit that can be p85d, p55d, p50d,
p858 or p55v. The Class IB sub-class has one family member, a dimer composed of a
catalytic p110v subunit associated with one of two regulatory subunits, p101 or p84 (Fruman
et al., Annu Rev. Biochem. 672481 (1998); Suire et al., Curr. Biol. 15:566 ). The
modular domains of the p85/55/50 subunits include Src gy (SH2) domains that bind
phosphotyrosine residues in a specific sequence t on activated receptor and
cytoplasmic tyrosine kinases, resulting in activation and zation of Class lA Pl3Ks. Class
IB PI3K is activated ly by G protein-coupled receptors that bind a diverse repertoire of
peptide and non-peptide ligands (Stephens et al., Cell 892105 (1997)); Katso et al., Annu.
Rev. Cell Dev. Biol. 172615-675 (2001)). Consequently, the resultant phospholipid products
of class I P|3K link upstream receptors with downstream cellular activities including
proliferation, survival, chemotaxis, cellular king, motility, metabolism, inflammatory and
allergic responses, transcription and translation (Cantley et al., Cell 642281 (1991); Escobedo
and Williams, Nature 335:85 (1988); Fantl et al., Cell 69:413 (1992)).
PCT/1B2012/055929
In many cases, PIP2 and PIP3 recruit Akt, the product of the human homologue of the viral
oncogene v-Akt, to the plasma membrane where it acts as a nodal point for many
intracellular signaling pathways important for growth and survival (Fantl et al., Cell -
423(1992); Bader et al., Nature Rev. Cancer 5:921 (2005); Vivanco and Sawyer, Nature Rev.
Cancer 2:489 (2002)). Aberrant regulation of PI3K, which often increases survival through
Akt activation, is one ofthe most prevalent events in human cancer and has been shown to
occur at multiple levels. The tumor suppressor gene PTEN, which dephosphorylates
phosphoinositides at the 3' position of the inositol ring and in so doing antagonizes PI3K
activity, is functionally deleted in a y of tumors. In other tumors, the genes for the
p110q isoform, PIK3CA, and for Akt are amplified and increased protein expression of their
gene products has been demonstrated in several human s. Furthermore, mutations
and translocation of p850! that serve to up—regulate the p85-p110 x have been
described in human cancers. Also, somatic missense mutations in PIK3CA that activate
downstream signaling pathways have been described at icant frequencies in a wide
diversity of human cancers (Kang at al., Proc. Natl. Acad. Sci. USA 2 (2005); Samuels
et al., e 304:554 (2004); Samuels et al., Cancer Cell 7:561-573 (2005)). These
observations show that lation of phosphoinositoI-3 kinase and the am and
downstream ents of this signaling y is one of the most common deregulations
associated with human cancers and proliferative diseases (Parsons et al., Nature 4362792
(2005); Hennessey at el., Nature Rev. Drug Disc. 42988-1004 (2005)).
The mammalian target of rapamycin (mTOR) is a member of the class IV PI3K. mTOR
assembles a signaling network that transduces nutrient signals and various other stimuli to
regulate a wide range of cellular functions including cell growth, proliferation, survival,
autophagy, various types of differentiation and metabolism. In mammalian cells, the mTOR
protein is found xed in two distinct entities called mTORC1 and . The
mTORC1 complex, that is to say mTOR associated with raptor, has been the matter of
numerous studies. It is mTORC1 that integrates nutrient and growth factor inputs, and is in
turn responsible for cell growth regulation, mainly through protein synthesis regulators such
as 4EBP1 or RPSG. mTORC1 regulation requires PI3K and Akt activation for activation,
meaning that mTORCl is an effector of the PI3K pathway. mTOR when associated in the
mTOR complex 2 2) has been shown to be responsible for the activation of Akt by
phosphorylation of S473 (Akt 1 numbering) ssov et al., Science 30727098 (2005)).
mTORCZ is hence here considered as an upstream activator of Akt. Interestingly mTOR can
therefore be considered as being important both upstream and downstream of Akt. mTOR
catalytic inhibiton might therefore represent a unique way of addressing a very strong block
in the kt pathway, by addressing both upstream and downstream effectors.
A link between mTOR inhibition and autophagy has also been demonstrated (Ravikumar et
al., Nat Genet. 36(6):585—95 (2004)). Autophagy is essential for neuronal homeostasis and
its dysfunction has been linked to neurodegeneration. Loss of autophagy in neurons causes
egenerative disease in mice (Komatsu et al., Nature 441 :880-4 ; Hara et al.,
Nature 441:885-9 (2006)) suggesting a al role for autophagy to maintain protein
tasis in neurons. Neurodegenerative es are characterized by inclusions of
misfolded proteins as one of the hallmarks. ion of autophagy enhances nce of
misfolded ns and thus is proposed as therapy for neurodegenerative proteinopathies.
Huntington‘s Disease (HD) is an autosomal dominant neurodegenerative disorder where a
mutation of IT15 gene encoding the Huntingtin (Htt) protein leads to Polyglutamine
expansion in Exon1 of Htt. Intracellular aggregation of this mutant Htt protein and brain
y (in particular cortex and striatum) are the main hallmarks of HD. It clinically leads to
movement disturbance and cognitive dysfunction besides psychiatric bances and
weight loss.
Inhibition of mTOR induces autophagy and reduces mutant Htt aggregation and mutant Htt-
mediated cell death in in vitro and in vivo models of HD (Ravikumar et al., Nat Genet.
36(6):585—95 (2004)). mTOR inhibition ore provides an opportunity for pharmaceutical
intervention and modulation of the disrupted cellular processes characteristic of HD.
In view of the above, mTOR inhibitors are considered to be of value in the treatment of
proliferative diseases, such as cancer, and other disorders, in particular, HD.
The present invention relates to novel purine derivatives having mTOR inhibitory activity,
their preparation, medical use and to medicaments comprising them.
Summag of the Invention
In a first aspect, the invention relates to a compound of formula (I), or a pharmaceutically
able salt thereof,
PCT/IBZOlZ/055929
\1R1o
R11R12
N R13
R17 Y
R1‘; R15 R14
wherein
R1 is selected from the group ting of
(R18)m
/ \
_N HZNQ—EN— ”ZN—(wN—
7 ,
[M3N HN/N\
N R
H R
R18 on each ence independently represents fluoro or methyl;
m represents 0, 1, 2 or 3;
R19 and R20 independently represent hydrogen or fluoro;
R21 ents fluoro;
R22 on each occurrence independently represents fluoro, methoxy, hydroxymethyl or
methoxycarbonyl;
q represents 0, 1 or 2 and rrepresents 0, 1, 2 or 3 provided that q + r is not 0;
R2, R3, R4, R5, R6, R7, R8 and R9 independently represent hydrogen, C1_3alky| orfluoro—C1.
salkyl; or R3 and R6 together form a methylene bridge; or R3 and R8 together form an
ethylene ; or R5 and R6 together form an ethylene bridge;
n and p independently represent 0, 1 or 2;
R10, R“, R12, R13, R14, R15, R16 and R17 on each occurrence independently represent
hydrogen, C1_3alkyl, fluoro-C1_3alky| or hydroxy—C1_3alkyl; or R11 and R16 together form an
PCT/132012/055929
ethylene bridge; or R13 and R14 together form an ethylene bridge; or R14 and R15, together
with the carbon atom to which they are attached, are linked to form a tetrahydropyranyl ring;
Y represents 0, CHRza, CRZ’J'R25 or NRZS,
wherein
R23 represents hydroxyl or fiuoro-C1.3alkyl; or R23 and R13, together with the carbon atoms
to which they are attached, are linked to form a fused ydrofuranyl ring;
R24 and R25 independently represent en or halogen; or R24 and R25, together with
the carbon atom to which they are attached, are linked to form a tetrahydropyranyl ring;
R26 represents C1_3alkyl or oxetanyl;
a compound, or a pharmaceutically acceptable salt thereof, selected from the following list of
compounds:
8—(1H-Indol-4—yl)(3-methyl-morpholinyl)[1 ,4]oxazepanyl-9H-purine;
8—(1H-lndolyl)(3-methyl—morpholinyI)(3-propyl-morpholinyl)—9H-purine;
8—[8-(1H-lndolyl)(3-methyl-morpholinyl)—9H-purinyl]-8—aza-bicyclo[3.2.1]octanol;
8-[8-(1H-|ndolyl)—6-(3-methyl-morpholin-4—yl)—9H-purinyl]—8-aza-bicyclo[3.2.1]octanol;
2—(3-Ethyl-morpholinyl)—8—(1H-indoI—4-y|)(3-methyl-morpholinyl)—9H-purine;
8-(1H-lndolyl)(3-methyl-morpho|inyl)(4-methyl-piperazin-‘l-y|)-9H-pu rine;
lndol—4-yl)—6-(3—methyl-morpholinyl)(6-oxaaza—spiro[3.5]nonyl)-9H-purine;
8—(1H-lndolyl)(3-methyl-morpholin-4~yl)(4-oxetan-3—yl—piperazinyl)-9H-purine;
8-(1 H-lndolyl)(3-methyl-morpho|inyl)(tetrahydro-furo[3,4-c]pyrrolyl)-9H-purine;
2-(Hexahydro-furo[3,4-c]pyridin-5—yl)~8-(1 H-indolyl)(3-methyl-morpholin-4—yl)—9H-purine;
8—(1H-lndol—4-yl)(3-isopropyl-morpho|inyl)(3—methyl-morpholin-4—yl)—9H-purine;
8—(1H-lndolyl)(3-methyl—morpho|inyl)—2—(4—trifluoromethyl-piperidin—1—yl)-9H-purine;
-Dimethyl-morpholinyl)(1H—indolyl)(3-methyl-morpholinyl)—9H-purine;
lndolyl)(3-methyl-morpholinyl)(7-oxaaza-spiro[3.5]nony|)-9H-purine;
{4-[8-(1 H-lndol-4—yl)(3-methyl-morpholinyl)—9H-purinyl]-morpholiny|}-methanol;
{4-[8—(1H-lndoI—4—yl)—6—(3-methyl-morpholin—4—yl)—9H—purinyl]-morpholin—2—yl}-methanol.
Definitions
As used herein, the term “halogen" or “halo” refers to fluoro, chloro, bromo, and iodo.
WO 61305
As used herein, the term “C1_3alkyl” refers to a fully saturated branched or unbranched
hydrocarbon moiety having up to 3 carbon atoms. Representative examples of C1_3a|ky|
include methyl, ethyl, n-propyl and iso—propyl.
As used herein, the term xy-C1_3alkyl" refers to a C1_3alkyl group as defined herein
above, substituted by one hydroxy radical. Representative examples of hydroxy-C1_3alkyl
include, but are not limited to, hydroxyl-methyl, 2—hydroxy-ethyl, 2—hydroxy—propyl and 3-
y-propyl.
As used herein, the term "fluoro-C1.aalkyl" refers to a C1.3a|ky| radical, as defined above,
substituted by one or more fluoro radicals. Examples of fluoro-C1-3alkyl include
trifluoromethyl, difluoromethyl, fluoromethyl, 2,2,2-trifluoroethyl, 1-f|uoromethylfluoroethyl
and fluoropropyl.
As used herein, the term "a,” "an,” "the” and similar terms used in the context of the present
invention (especially in the context of the claims) are to be construed to cover both the
ar and plural unless otherwise indicated herein or clearly contradicted by the context.
The use ofany and all examples, or exemplary language (e.g. "such as”) provided herein is
intended merely to better illuminate the invention and does not pose a limitation on the scope
of the invention othenivise claimed.
The term "compounds of the present invention" (unless specifically identified othen/vise) refer
to nds of formula (l), compounds of the Examples, pharmaceutically acceptable salts
of such compounds, and/or hydrates or solvates of such compounds, as well as, all
stereoisomers ding diastereoisomers and enantiomers), tautomers and isotopically
labeled compounds (including deuterium). The term s of the ion” is intended to
have the same meaning as “compounds of the present invention".
As used herein, the term “inhibit”, "inhibition" or “inhibiting" refers to the reduction or
suppression of a given condition, symptom, or disorder, or disease, or a icant decrease
in the baseline activity of a biological activity or process.
As used , the term “isomers” refers to different compounds that have the same
molecular formula but differ in arrangement and configuration of the atoms. Also as used
, the term “an optical isomer” or “a stereoisomer" refers to any of the s stereo
isomeric rations which may exist for a given nd of the present invention and
includes geometric isomers. It is understood that a substituent may be attached at a chiral
center of a carbon atom. The term "chiral'l refers to molecules which have the property of
non—superimposability on their mirror image partner, while the term "achiral" refers to
molecules which are superimposable on their mirror image partner. Therefore, the invention
W0 2013/061305
includes enantiomers, diastereomers or racemates of the compound. “Enantiomers” are a
pair of stereoisomers that are non- superimposable mirror images of each other. A 1:1
mixture of a pair of omers is a "racemic” mixture. The term is used to designate a
racemic mixture where appropriate. "Diastereoisomers" are stereoisomers that have at least
two asymmetric atoms, but which are not mirror-images of each other. The absolute
stereochemistry is specified according to the Cahn— lngold- Prelog R-S system. When a
compound is a pure enantiomer the chemistry at each chiral carbon may be specified
by either R or 8. Resolved compounds whose absolute configuration is unknown can be
designated (+) or (-) depending on the ion (dextro- or levorotatory) which they rotate
plane polarized light at the wavelength of the sodium D line. Certain nds described
herein contain one or more asymmetric centers or axes and may thus give rise to
enantiomers, diastereomers, and other stereoisomeric forms that may be defined, in terms of
absolute chemistry, as (R)— or (S)-.
As used herein, the term aceutically acceptable carrier" includes any and all solvents,
dispersion media, gs, surfactants, antioxidants, preservatives (e.g., cterial
agents, antifungal agents), isotonic agents, absorption delaying agents, salts, preservatives,
drugs, drug stabilizers, binders, excipients, disintegration agents, lubricants, sweetening
agents, flavoring agents, dyes, and the like and combinations thereof, as would be known to
those d in the art (see, for example, Remington's Pharmaceutical es, 18th Ed.
Mack Printing Company, 1990, pp. 1289- 1329). Except insofar as any conventional carrier
is incompatible with the active ingredient, its use in the therapeutic or pharmaceutical
compositions is contemplated.
As used herein, the term “prevention” of any particular disease or er refers to the
administration of a compound of the invention to a subject before any symptoms of that
e or disorder are apparent.
As used herein, the terms “salt” or “salts” refers to an acid addition salt of a compound of the
ion. “Salts” include in particular “pharmaceutically acceptable salts”. The term
“pharmaceutically acceptable salts" refers to salts that retain the biological effectiveness and
properties of the compounds of this ion and, which typically are not biologically or
othenNise undesirable.
As used herein, the term “subject" refers to an animal. Typically the animal is a mammal. A
subject also refers to for example, primates (e.g., humans, male or female), cows, sheep,
goats, horses, dogs, cats, rabbits, rats, mice, fish, birds and the like. in certain
embodiments, the subject is a primate. In yet other embodiments, the subject is a human.
As used herein, a subject is “in need of’ a treatment if such subject would benefit biologically,
medically or in quality of life from such treatment.
The term "a eutically effective amount" of a compound of the present invention refers
to an amount of the compound of the present invention that will elicit the ical or l
se of a subject, for example, reduction or inhibition of an enzyme or a protein activity,
or ameliorate symptoms, alleviate conditions, slow or delay disease progression, or prevent a
disease, etc. In one non-limiting ment, the term “a therapeutically effective amount"
refers to the amount of the compound of the present invention that, when administered to a
subject, is effective to (1) at least partially alleviating, inhibiting, preventing and/or
ameliorating a condition, or a disorder or a disease (i) mediated by mTOR or (ii) associated
with mTOR activity, or (iii) characterized by activity (normal or abnormal) of mTOR; (2)
reducing or inhibiting the activity of mTOR. In another non-limiting embodiment, the term “a
therapeutically effective amount” refers to the amount of the compound of the present
invention that, when administered to a cell, or a tissue, or a non-cellular biological material,
or a medium, is effective to at least lly reduce or inhibit the activity of mTOR. The
meaning of the term “a therapeutically effective amount" as illustrated in the above
embodiments for mTOR also applies by the same means to any other relevant
proteins/peptides/enzymes, such as class IV PI3Ks.
As used , the term “treat", “treating" or "treatment" of any e or disorder refers in
one embodiment, to ameliorating the disease or disorder (i.e., slowing or arresting or
reducing the development of the disease or at least one of the clinical symptoms thereof). In
another embodiment, “treat", "treating" or "treatment" refers to modulating the disease or
disorder, either physically, (e,g., ization of a discernible symptom), physiologically, (e.g.,
ization of a physical parameter), or both.
Detailed Description of the ion
The present invention provides compounds and pharmaceutical formulations thereof that
may be useful in the treatment or prevention of diseases, conditions and/or disorders
modulated by the inhibition of mTOR.
Embodiment 1: a nd of formula (I), or a pharmaceutically acceptable salt thereof, as
described hereinbefore.
Embodiment 2: a nd of formula (I), or a pharmaceutically able salt thereof,
PCT/lBZ012/055929
R N 9
N \ N 1“
R1—</fiR 11
R R12
{:1 N N R13
R15 14
wherein
R1 is selected from the group ting of
(R18)m
/ \ HNW HN />—E
(R )q
E \ \
N R19
22
H R (R
and )'
, ;
wherein
R18 on each occurrence independently represents fluoro or methyl;
m represents 0, 1, 2 or 3;
R19 and R20 independently represent hydrogen or fluoro;
R21 represents fluoro;
R22 on each occurrence independently ents , methoxy, hydroxymethyl or
methoxycarbonyl;
q represents 0, 1 or 2 and r represents 0, 1, 2 or 3 provided that q + r is not 0;
R2, R3, R4, R5, R6, R7, R8 and R9 independently represent hydrogen, C1_3alkyl or fluoro-C1.
3alkyl; or R3 and R6 together form a methylene bridge; or R3 and R3 together form an
ethylene bridge; or R5 and R6 together form an ethylene bridge;
n and p ndently represent 0, 1 or 2;
R10, R11, R12, R13, R14, R15, R16 and R17 on each occurrence independently represent
hydrogen, C1-3alkyl, fluoro-C1.3alky| or hydroxy-C1_3alkyl; or R11 and R16 together form an
WO 61305
ethylene ; or R13 and R” together form an ethylene bridge; or R14 and R15, er
with the carbon atom to which they are attached, are linked to form a tetrahydropyranyl ring;
Y represents 0, CHR23, CR24R25 or NR”,
wherein
R23 represents hydroxyl or fluoro-C1.3alkyl; or R23 and R13, together with the carbon atoms
to which they are attached, are linked to form a fused tetrahydrofuranyl ring;
R24 and R25 independently represent hydrogen or halogen; or R24 and R25, together with
the carbon atom to which they are attached, are linked to form a tetrahydropyranyl ring;
R26 represents C1_3alky| or oxetanyl.
Embodiment 3: a compound according to Embodiment 1 or Embodiment 2, or a
pharmaceutically acceptable salt thereof, wherein R1 represents
m")m
/ \
ment 4: a compound according to Embodiment 3, or a pharmaceutically acceptable
salt thereof, wherein m represents 0.
Embodiment 5: a compound according to Embodiment 1 or Embodiment 2, or a
pharmaceutically able salt thereof, wherein R1 represents
HN/ \
Embodiment 6: a compound according to Embodiment 5, or a pharmaceutically acceptable
salt thereof, n R19 and R20 both represent hydrogen.
Embodiment 7: a compound according to Embodiment 1 or Embodiment 2, or a
pharmaceutically acceptable salt thereof, wherein R1 represents
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(R21)
(Rn)r
Embodiment 8: a nd according to Embodiment 7, or a pharmaceutically acceptable
salt thereof, wherein q represents 0 or 1 and r represents 0, 1 or 2.
Embodiment 9: a compound ing to any one of Embodiments 1 to 8, or a
pharmaceutically acceptable salt thereof, wherein R2, R3, R4, R5, R6, R7, R8 and R9
independently represent hydrogen or methyl; or R3 and R6 together form a methylene bridge;
or R3 and R8 together form an ethylene ; or R5 and R6 together form an ethylene
bridge.
Embodiment 10: a compound according to any one of Embodiments 1 to 9, or a
ceutically acceptable salt thereof, wherein Y ents 0.
Embodiment 11: a compound according to any one of Embodiments 1 to 9, or a
pharmaceutically acceptable salt thereof, wherein Y represents CHR” or CR24R25.
Embodiment 12: a compound, or a pharmaceutically acceptable salt thereof, according to
Embodiment 1 which is selected from:
2,6-Bis—(3-methyl-morpholinyl)pyridin-2—yl-9H-purine;
ethyl—morpholinyl)(3-methyl-morpholinyl)—8—(1H-pyrazolyI)-9H—purine;
8—(1H-|ndoIy|)(3-methyl-morpholinyl)[1,4]oxazepanyI-9H-purine;
8-[4-(1H-Imidazol—Z-y|)-phenyl]-2,6-bis-(3-methyI-morpholin-4—yl)—9H-purine;
8—(6-FIuoro-1H-indol-4—yl)—2-(3-methyl-morpholiny|)(3-methyl—morpholin-4—yl)-9H—purine;
{4-[2,6-Bis-(3-methyl-morpholin-4—yl)—9H-purin-8—yl]-1H—indol—6-yl}-methanol;
2—(3-Methyl—morpholinyl)—6-(3-methyl-morpholinyl)pyridinyl-9H-purine;
2,6-Bis-(3-methyl-morpho|iny|)pyridin-2—yl—9H-purine;
2,6-Di-morpholin-4—yl-8—pyridinyl-9H-purine;
2,6—Bis-(3-methy|-morpho|in—4—yl)—8—(1H-pyrazol—3-yl)—9H-purine;
2,6-Bis-(3-methyl-morpholin-4—yl)(1H-pyrazoIyl)-9H-purine;
8—(1H-lndol-4—yl)(3-methyl-morphoIinyl)(3-propyl-morpho|in—4-y|)-9H-purine;
8-[8-(1H-IndoIyl)(3-methyl-morpholinyl)—9H-purinyl]aza-bicyclo[3.2.1]octanol;
1H-lndol-4—yl)(3-methyl-morpholinyI)-9H-purin—2-yl]—8—aza-bicyclo[3.2.1]octanol;
2—(3—EthyI-morpholin-4—yl)—8—(1H—indol—4-y|)(3—methy|—morpholin-4—yl)—9H—purine;
PCT/lBZOlZ/055929
IndoIyl)(3-methyl—morpholinyl)(4-methyl-piperaziny|)-9H-purine;
8—(1H-lndol-4—yl)(3-methyl-morpholinyl)(6—oxaaza-spiro[3.5]nonyI)-9 H-pu rine;
8—(1H-lndolyl)(3-methyl-morpholinyI)(4-oxetanyl-piperazinyl)-9H-purine;
8-(1H-lndoIyl)(3-methyl-morpho|iny|)(tetrahydro-furo[3,4-c]pyrro|yl)-9H-purine;
2—(Hexahydro-furo[3,4—c]pyridin-5—yl)—8—(1H-indol—4-yl)(3-methyl-morpholinyl)—9H—purine;
8—(1H-lndolyl)(3-isopropyl-morpholinyl)(3-methyl-morpho|iny|)-9H-purine;
lndo|-4—y|)(3-methyl-morpholin~4-yI)(4-trifluoromethyl-piperidinyl)-9H-pu rine;
2-(2,6-Dimethyl-morpholinyI)(1 H-indoly|)-6—(3-methyl-morpholinyl)—9 ne;
8-(1H-lndoIyl)(3-methyl-morpholinyl)(7-oxaaza-spiro[3.5]nonyl)-9H-purine;
{4-[8-(1 H-lndolyl)(3-methyl—morpholinyl)-9H-purin—2—yl]—morpholiny|}-methanol ;
{4-[8-(1 H-I ndolyl)(3-methyl—morpho|inyl)-9H-purin—2-yl]—morpholinyl}-methanol;
-[2,6—Bis-(3-methyl-morpholin—4-y|)-9H-purinyl]-pyridinylamine;
-[2,6—Bis-(3-methyl-morpholin—4—yl)—9 H-purinyl]-pyridin—2-ylamine;
—[2,6-Bis—(3-methyl—morpholin—4-y|)- 9H-purin-8—yl]—pyrimidinyl-amine;
8-[4-(1H-lmidazolyl)—phenyI]-2,6-bis-(3-methyl—morpholinyl)—9H-purine;
8-(6-Methoxy-1H—indolyl)(3-methyl—morpholinyl)(3-methyl-morpholinyl)-9H—
purine;
4-[2,6-Bis-(3-methyl-morpholin-4—y|)-9H-purinyl]-1H-indole—G—carboxylic acid methyl ester;
and pharmaceutically acceptable salts thereof.
Embodiment 12: a compound, or a pharmaceutically acceptable salt thereof, according to
Embodiment 1 which is selected from:
2,6-Bis—((R)—3-methyI-morpho|inyl)pyridinyl—9H-purine;
2—((S)Methyl—morpholin—4-yl)—6-((R)—3-methyl—morpholinyl)—8—(1 zol-S-yl)—9H—
purine;
8-(1H-IndoIyl)((R)methyl-morpholiny|)[1 ,4]oxazepanyI-9H-purine;
8-[4—(1H-Imidazol-2—yl)-phenyl]—2,6~bis—((R)—3-methyl-morpholinyl)—9H—purine;
8—(6-Fluoro-1 H-indol-4—yl)((S)—3-methyl-morph0linyl)((R)—3-methyl-morpholinyl)-
9H—purine;
{4-[2,6-Bis-((R)—3-methyl-morpholinyl)-9H-purin—8-yl]-1H-indol—6-y|}-methanol;
2—((S)Methyl-morpholinyl)—6-((R)methyl-morpholiny|)pyridin-2—yI-9H-purine;
2,6-Bis-((S)—3-methyI-morpholiny|)pyridinyl—9H-purine;
2,6-Di-morpho|inylpyridinyl-9H-purine;
s—((S)—3—methyl-morpholinyl)—8—(1H-pyrazol-3—yl)-9H-purine;
2,6-Bis-((R)—3-methyl-morpholinyl)-8—(1H-pyrazolyl)-9H-pu ri ne;
8—(1H-|ndoIyl)((R)methyl-morphoIinyl)((R)—3-propy|—morpholinyl)—9H-pu rine;
8-[8-(1 H-Indolyl)—6-((R)—3-methyl-morpholinyl)-9H-purinyl]—8-aza-bicyclo[3.2.1]octan-
3-ol;
1H-lndo|y|)—6-((R)—3-methyl-morpholin—4-yl)-9H-purinyl]aza-bicyclo[3.2.1]octan-
3-ol;
2—((R)—3-Ethyl-morpholin—4—yl)—8—(1H-indolyl)((R)methyl-morpholinyl)-9H-purine;
8-(1H-lndolyl)((R)methyl-morpholinyl)(4-methyl-piperazinyl)-9H-purine;
8-(1H-lndol—4—yl)—6-((R)methyl-morpholinyl)(6-oxaaza—spiro[3.5]nonyl)-9H-
purine;
8—(1H-lndolyl)((R)—3-methyl-morpholin—4-yl)-2—(4-oxetanyl-piperaziny|)-9H-purine;
8-(1H-lndolyl)((R)methyl-morpholin-4~yl)—2-(tetrahydro-furo[3,4-c]pyrrol-5—yl)-9H-
purine;
2—(Hexahyd ro-furo[3,4-c] pyridin—5—yl )(1 H-indolyl)((R)methyl-morpholin—4—yl)—9H-
purine;
8—(1H-lndolyl)—2-((R)isopropyl-morpholinyl)—6-((R)—3-methyl-morpholin-4—yl)—9H-
purine;
&(1H—lndol—4—yl)—6-((R)methyl—morpholinyl)(4—trifluoromethyl—piperidin—1-yl)-9H-
purine;
,6R)-2,6-Dimethyl-morpholin-4—yl)—8—(1H-indolyl)—6—((R)—3-methyl—morpholinyl)-9H-
purine;
8—(1H-|ndolyl)((R)methyl-morpholinyI)(7-oxa-1—aza-spiro[3.5]non—1-y|)—9H-
purine;
{(S)—4-[8-(1 H-lndolyl)—6-((R)methyl-morpholin—4-yI)-9H-purinyl]-morpholinyl}-
{(R)[8-(1H-lndolyl)((R)methyl-morpholinyl)—9H-pu rinyl]-morpholinyl}—
methanol;
-[2,6-Bis-((S)methyl—morpholin-4—yl)—9H—purin—8—yl]—pyridin—2-ylamine;
-[2,6-Bis-((R)—3-methyl-morpholinyl)-9H-purin-8—yl]-pyridinylamine;
-[2,6-Bis—((R)methyl-morpholin—4-yl)— 9H-purinyl]-pyrimidinyI-amine;
8-[4-(1H-lmidazol-2—yl)—phenyl]—2,6-bis-((S)methy|—morpholin-4—yl)-9H-purine;
8—(6-Methoxy—1 l—4-yl)((S)methyl—morpholin-4—yl)—6—((R)methyl-morpholinyl)-
9H—purine;
4-[2,6-Bis—((R)—3-methyl-morpholinyl)-9H-purin-B-yl]-1H-indole—G-carboxylic acid methyl
ester; and
pharmaceutically acceptable salts thereof.
On account of one or more than one asymmetrical carbon atom, which may be present in a
compound of the formula (I), a corresponding nd of the formula (I) may exist in pure
optically active form or in the form of a mixture of optical isomers, e. g. in the form of a race-
mic mixture. All of such pure optical isomers and all of their mixtures, including the racemic
es, are part of the present invention.
Depending on the choice of the starting materials and procedures, the nds can be
present in the form of one of the le isomers or as mixtures thereof, for example as
pure optical isomers, or as isomer mixtures, such as tes and diastereoisomer
mixtures, depending on the number of asymmetric carbon atoms. The present invention is
meant to e all such possible isomers, including racemic mixtures, diasteriomeric
es and optically pure forms. Optically active (R)- and (S)- isomers may be ed
using chiral synthons or chiral reagents, or resolved using conventional techniques. If the
compound contains a double bond, the substituent may be E or 2 configuration. If the
compound contains a disubstituted cycloalkyl, the cycloalkyl substituent may have a cis- or
trans-configuration. Where a compound comprising one or more chiral centers is drawn
herein with the stereochemistry indicated in the drawn structure, then the individual optical
isomer is intended. Where a compound comprising one or more chiral centers is drawn
herein without the stereochemistry indicated in the drawn structure, then no one specific
optical isomer is intended and the drawn chemical structure may represent any optical
isomer or mixture of isomers having that structure, for example a racemic or diasteriomeric
mixture.
In one ment, there is provided a compound of the Examples as an isolated
stereoisomer wherein the compound has one stereocenter and the isomer is in the R
configuration.
In one embodiment, there is provided a compound of the Examples as an isolated
stereoisomer wherein the compound has one stereocenter and the stereoisomer is in the S
uration.
In one embodiment, there is provided a nd of the Examples as an isolated
stereoisomer wherein the compound has two stereocenters and the stereoisomer is in the R
R configuration.
In one embodiment, there is provided a compound of the es as an isolated
stereoisomer n the compound has two stereocenters and the stereoisomer is in the R
S configuration.
In one embodiment, there is provided a compound of the Examples as an isolated
stereoisomer n the compound has two stereocenters and the stereoisomer is in the S
R configuration.
In one embodiment, there is provided a compound of the Examples as an ed
stereoisomer wherein the compound has two stereocenters and the stereoisomer is in the S
S configuration.
In one embodiment, there is provided a compound of the Examples, wherein the nd
has one or two centers, as a racemic mixture.
It is also possible that the intermediates and nds of the present invention may exist in
different eric forms, and all such forms are embraced within the scope of the
invention. The term "tautomer" or "tautomeric form" refers to ural isomers of different
energies which are interconvertible via a low energy barrier. For e, proton tautomers
(also known as prototropic tautomers) include interconversions via ion of a proton,
such as keto-enol and imine-enamine isomerizations. A specific example of a proton
tautomer is the imidazole moiety where the proton may migrate between the two ring
nitrogens. Valence tautomers include interconversions by reorganization of some of the
bonding electrons.
The compounds of the present invention may be capable of forming acid salts by virtue of the
presence of amino groups or groups similar thereto.
In one embodiment, the invention relates to a compound of the formula (I) as defined ,
in free form. In another embodiment, the invention relates to a compound of the formula (I)
as defined herein, in salt form. In another embodiment, the ion relates to a compound
of the formula (I) as defined herein, in acid addition salt form. In a further embodiment, the
invention relates to a compound of the formula (I) as defined herein, in pharmaceutically
acceptable salt form. In yet a further embodiment, the invention relates to a compound of the
formula (I) as defined herein, in pharmaceutically acceptable acid addition salt form. In yet a
further embodiment, the ion relates to any one of the compounds of the Examples in
free form. In yet a further embodiment, the invention relates to any one of the nds of
the Examples in salt form. In yet a further embodiment, the invention relates to any one of
the compounds of the Examples in acid addition salt form. In yet a further ment, the
invention relates to any one of the compounds of the Examples in pharmaceutically
able salt form. In still another embodiment, the invention relates to any one of the
nds of the Examples in pharmaceutically acceptable acid addition salt form.
Pharmaceutically acceptable acid addition salts can be formed with inorganic acids and
organic acids, e.g., acetate, aspartate, te, besylate, bromide/hydrobromide,
bicarbonate/carbonate, bisulfate/sulfate, oamphorsulfonate, chloride/hydrochloride,
chIortheophyIIonate, citrate, isulfonate, fumarate, gluceptate, gluconate, glucuronate,
hippurate, hydroiodide/iodide, isethionate, e, Iactobionate, Iaurylsulfate, malate,
maleate, malonate, mandelate, mesylate, methylsulphate, naphthoate, napsylate, nicotinate,
nitrate, octadecanoate, oleate, oxalate, palmitate, e, phosphate/hydrogen
PCT/132012/055929
phosphate/dihydrogen phosphate, polygalacturonate, propionate, te, succinate,
sulfosalicylate, tartrate, tosylate and trifluoroacetate salts.
Inorganic acids from which salts may be derived include, for example, hydrochloric acid,
hydrobromic acid, sulfuric acid, nitric acid, phosphoric acid, and the like.
Organic acids from which salts may be derived include, for example, acetic acid, propionic
acid, glycolic acid, oxalic acid, maleic acid, malonic acid, succinic acid, fumaric acid, tartaric
acid, citric acid, c acid, mandelic acid, methanesulfonic acid, ethanesulfonic acid,
toluenesulfonic acid, sulfosalicylic acid, and the like.
The ceutically able salts of the present invention can be synthesized from an
acidic moiety, by conventional chemical methods. Generally, such salts can be prepared by
reacting free base forms of these compounds with a stoichiometric amount of the appropriate
acid. Such reactions are typically carried out in water or in an organic solvent, or in a mixture
of the two. Generally, use of non-aqueous media like ether, ethyl acetate, ethanol,
isopropanol, or itrile is desirable, where practicable. Lists of additional suitable salts
can be found, e.g., in “Remington's ceutical Sciences", 20th ed., Mack Publishing
Company, Easton, Pa., (1985); and in “Handbook of Pharmaceutical Salts: Properties,
ion, and Use” by Stahl and Wermuth (Wiley-VCH, Weinheim, Germany, 2002).
rmore, the nds of the present invention, ing their salts, may also be
obtained in the form of their hydrates, or include other solvents used for their crystallization.
The compounds of the present invention may inherently or by design form solvates with
pharmaceutically acceptable solvents (including water); therefore, it is intended that the
ion embrace both solvated and unsolvated forms. The term "solvate" refers to a
molecular complex of a compound of the present invention (including pharmaceutically
acceptable salts thereof) with one or more solvent molecules. Such solvent molecules are
those commonly used in the pharmaceutical art, which are known to be innocuous to the
recipient, e.g., water, ethanol, and the like. The term "hydrate" refers to the x where
the solvent molecule is water.
Compounds of the invention, i.e. compounds of formula (I) that contain groups capable of
acting as donors and/or acceptors for hydrogen bonds may be e of forming co-crystals
with suitable co-crystal formers. These co-crystals may be prepared from nds of
formula (I) by known co-crystal forming ures. Such procedures include grinding,
heating, co-subliming, co-melting, or contacting in solution compounds of formula (I) with the
co-crystal former under crystallization conditions and isolating co-crystals thereby formed.
PCT/IBZOIZ/055929
Suitable co-crystal formers include those bed in . Hence the
invention further provides co-crystals comprising a compound of formula (I).
The compounds of the present invention, including salts, hydrates and es thereof, may
inherently or by design form polymorphs.
Any formula given herein is also intended to represent unlabeled forms as well as ically
labeled forms of the compounds. lsotopically labeled compounds have ures depicted by
the formulas given herein except that one or more atoms are replaced by an atom having a
selected atomic mass or mass number. Examples of isotopes that can be orated into
compounds of the invention include isotopes of en, carbon, nitrogen, oxygen,
phosphorous, fluorine, and chlorine, such as 2H, 3H, 11C, 130, 14C, 15N, 18F 31F, 32F, 358, 36Cl,
125l respectively. The invention includes various isotopically labeled compounds as defined
herein, for example those into which ctive isotopes, such as 3H and 14C, or those into
which non—radioactive es, such as 2H and 13C3 are t. Such isotopically labelled
compounds are useful in metabolic studies (with 14C), reaction kinetic studies (with, for
example 2H or 3H), detection or imaging techniques, such as positron emission tomography
(PET) or single-photon emission computed tomography (SPECT) ing drug or substrate
tissue distribution assays, or in radioactive treatment of patients. In particular, an 18F or
labeled compound may be particularly desirable for PET or SPECT studies. lsotopically-
labeled compounds of formula (I) can generally be prepared by conventional techniques
known to those skilled in the art or by processes analogous to those described in the
accompanying Examples and ations using an appropriate isotopically-labeled
reagents in place of the non—labeled reagent previously employed.
Further, substitution with heavier isotopes, particularly deuterium (i.e., 2H or D) may afford
certain eutic ages resulting from greater metabolic stability, for example
increased in vivo half-life or reduced dosage requirements or an improvement in therapeutic
index. It is understood that deuterium in this context is ed as a tuent of a
compound of the formula (I). The concentration of such a heavier isotope, specifically
deuterium, may be defined by the ic enrichment factor. The term "isotopic enrichment
factor" as used herein means the ratio between the ic abundance and the natural
abundance of a specified isotope. If a tuent in a compound of this invention is denoted
deuterium, such compound has an isotopic enrichment factorfor each designated deuterium
atom of at least 3500 (52.5% deuterium incorporation at each designated deuterium atom),
at least 4000 (60% deuterium incorporation), at least 4500 (67.5% deuterium incorporation),
at least 5000 (75% deuterium incorporation), at least 5500 (82.5% deuterium oration),
at least 6000 (90% deuterium incorporation), at least 6333.3 (95% deuterium incorporation),
at least 6466.7 (97% deuterium incorporation), at least 6600 (99% deuterium incorporation),
or at least 6633.3 (99.5% deuterium incorporation).
Pharmaceutically acceptable solvates in accordance with the invention include those wherein
the solvent of crystallization may be isotopically substituted, e.g. D20, de-acetone, de-DMSO.
Compounds of the present invention may be synthesized by synthetic routes that include
processes analogous to those well-known in the chemical arts, particularly in light of the
description contained . The starting materials are generally available from cial
sources such as Sig ma-Aldrich or are readily prepared using methods well known to those
skilled in the art (e.g., prepared by methods generally described in Louis F. Fieser and Mary
Fieser, Reagents for Organic Synthesis, v. 1-19, Wiley, New York (1967-1999 ed.), or
Beilsteins Handbuch der organischen Chemie, 4, Aufl. ed. Springer-Verlag, Berlin, including
supplements (also available via the ein online database».
In a further aspect, the invention relates to a s for the preparation of a compound of
the a (I), in free form or in ceutically acceptable salt form, comprising
(a) the reaction of a compound of formula (II)
(II)
in which Y, R2, R3, R4, R5, R6, R7, R8, R9, R”, R", R12, R13, R14, R15, R16, R”, n and p are as
defined for formula (I), with a compound of formula (III), (IV) or (V)
H o\B,o \/\/S
I1 I1 i
(III) (IV) (V)
in which R1 is as defined for formula (I), or
(b) the reaction of a compound of formula (VI)
W0 2013/061305
(VI)
in which R‘, R2, R3, R4, R5, R6, R7, R3 and R9 are as defined for formula (I) and Hal
represents halogen, for example chloro, with a compound of formula (VII)
R10 R11
HN R13
R17 Y
R R15 R14
(VII)
in which Y, R10, R“, R12, R13, R14, R15, R16, R", n and p are as defined for formula (I), and
(c) the optional reduction, oxidation or other functionalisation of the resulting nd,
(d) the cleavage of any protecting group(s) present,
(e) the recovery of the so obtainable nd of the a (I) in free form or in
pharmaceutically able salt form,
(f) the optional separation of mixtures of optically active s into their individual optically
active isomeric forms.
The reactions can be effected according to conventional methods. For example, the reaction
described in step (a) above may be carried out in the presence of a suitable metal catalyst,
for example Pd(PPh3)4 or PdC|2(dppf), optionally a suitable base, for example cesium
fluoride, a suitable solvent, for example toluene or NEta, acetonitrile/water, and at a suitable
temperature, for example 90 to 150 °C.
The reaction described in step (b) above may be carried out in the presence of suitable base,
for example DIPEA, a suitable solvent, for example 1-butanol, and at a suitable temperature,
for example 70 to 90 °C.
The further optional reduction, oxidation or other onalisation of compounds of formula
(I) may be carried out ing to methods well know to those skilled in the art.
Within the scope of this text, only a y removable group that is not a constituent of the
particular desired end product of the compounds of the present invention is designated a
W0 2013/061305
"protecting group", unless the context indicates otherwise. The protection of functional
groups by such ting , the protecting groups themselves, and their cleavage
reactions are described for example in standard reference works, such as J. F. W. McOmie,
"Protective Groups in Organic Chemistry", Plenum Press, London and New York 1973, in T. .
W. Greene and P. G. M. Wuts, "Protective Groups in Organic Synthesis", Third edition,
Wiley, New York 1999, in "The Peptides"; Volume 3 (editors: E. Gross and J. Meienhofer),
Academic Press, London and New York 1981, in "Methoden der organischen Chemie"
(Methods of Organic Chemistry), Houben Weyl, 4th n, Volume 15/l, Georg Thieme
Verlag, Stuttgart 1974, and in H.—D. Jakubke and H. Jeschkeit, "Aminoséuren, Peptide,
Proteine" (Amino acids, Peptides, Proteins), Verlag Chemie, Weinheim, Deerfield Beach, and
Basel 1982. A characteristic of protecting groups is that they can be removed readily (i.e.
without the ence of red secondary reactions) for example by solvolysis,
reduction, photolysis or alternatively under logical conditions (e.g. by enzymatic
cleavage).
Salts of compounds of the present invention having at least one salt-forming group may be
prepared in a manner known to those skilled in the art. For example, acid addition salts of
compounds of the present invention are ed in customary manner, e.g. by treating the
compounds with an acid or a suitable anion exchange reagent.
Salts can be converted into the free compounds in accordance with methods known to those
skilled in the art. Acid addition salts can be converted, for example, by treatment with a
suitable basic agent.
Any ing mixtures of isomers can be separated on the basis of the physicochemical
differences of the constituents, into the pure or ntially pure geometric or l
isomers, diastereomers, racemates, for example, by tography and/or fractional
crystallization.
For those compounds containing an asymmetric carbon atom, the nds exist in
individual optically active isomeric forms or as mixtures thereof, eg. as racemic or
diastereomeric mixtures. Diastereomeric mixtures can be separated into their individual
diastereoisomers on the basis of their physical al differences by methods well known
to those skilled in the art, such as by tography and/or fractional crystallization.
Enantiomers can be ted by converting the enantiomeric mixture into a diastereomeric
mixture by reaction with an appropriate optically active compound (e.g., chiral auxiliary such
as a chiral alcohol or Mosher's acid chloride), separating the diastereoisomers and
converting (e.g., hydrolyzing) the individual reoisomers to the corresponding pure
WO 61305
omers. Enantiomers can also be separated by use of a commercially available chiral
HPLC column.
The invention further includes any t of the present processes, in which the reaction
components are used in the form of their salts or optically pure material. Compounds of the
invention and intermediates can also be converted into each other according to s
generally known to those d in the art.
For illustrative purposes, the reaction schemes depicted below provide potential routes for
synthesizing the compounds of the present invention as well as key intermediates. For a
more detailed description of the individual reaction steps, see the Examples section below.
Those skilled in the art will appreciate that other synthetic routes may be used to synthesize
the inventive compounds. Although specific ng materials and reagents are depicted in
the schemes and discussed below, other starting materials and reagents can be easily
substituted to provide a variety of derivatives and/or on conditions. In addition, many of
the compounds prepared by the methods described below can be further modified in light of
this disclosure using conventional chemistry well known to those skilled in the art.
PCT/IBZOIZ/055929
Scheme 1. General Procedure 1 for synthesis of purine compounds
R 10
O R11R12
HN R13
E R9 R17 Y
N R16 R15 (VII)
H—'</ \N (IX) R14
I k —> —>
H N/ CI Base, Solvent Base, t
Heat
(VIII)
R11R12 R R11R12
R13 Base, Solvent R13
WY Y
16 R16 R15
R14 R14
W R7
R‘\ R8
I1 I N
R 1 \
(III). R (IV) or M R”
R1 / N
| /J\ :2"er
N N R13
. u
Coupling Agent
Base, Solvent R17 Y
(I) R16 R15 R14
Generally, the nds of formula (I) can be ed according to Scheme 1 in four
steps, starting from commercially available material (VlIl). As to the individual steps in the
scheme shown above, step one involves preparation of the intermediate (X) by chlorine
displacement with a nucleophile such as functionalized morpholino intermediate (IX).
Intermediate (XI) can be prepared by on of intermediate (X) with intermediate (VII) in
the presence of adequate base such as diisopropylethyl amine, solvent such as dimethyl
acetamide and heat. Step three involves bromination of intermediate (XI) to intermediate (II)
utilizing bromine in an appropriate t such as dichloromethane. Target compounds of
formula (I) can be prepared by coupling intermediate (II) with a variety of cially
available or synthesized boronic acids or esters of structures (III) or (IV), or tributylstannyl
derivatives of formula (V), using metal catalysts most often exemplified by commercially
available palladium complexes.
Scheme 2. General Procedure 2 for synthesis of purine compounds
R6 R
R7 R7
R“ R8
CI R9 R9
N (IX) N
\ \ Br2
N N/ Base, Solvent
Cl H N/ Base, Solvent
(VIII) (X)
HO\ /OH 0\ /o R‘\ /\/\
IB ? W3“
R 1
(In), R (IV) or (V)
Coupling Agent
Base, t
(XII)
R10 11
R R12 R R7
R R
HM R13
RWWY 9
R16 R15 N
14 IV") 11
R R1—</ l R R12
R1 1R")/ 13
Base, Solvent u N N R
Heat R17WY
(XIII) (I) R16 R15 R14
Generally, the compounds of formula (I) can be prepared according to Scheme 2 in four
steps, starting from commercially available material (VIII). As to the individual steps in the
scheme shown above, step one involves preparation of the intermediate (X) by chlorine
displacement with a nucleophile such as a onalized lino intermediate of a
(IX). Intermediate (XII) can be prepared by bromination of intermediate (X) in the presence of
PCT/I32012/055929
an appropriate solvent such as dichloromethane. Step three es the coupling of
intermediate (XII) with a variety of commercially available or synthesized boronic acids or
esters of structures (III) or (IV), or tributylstannyl derivatives of formula (V), using metal
catalysts most often exemplified by commercially available palladium complexes. Target
nds of formula (I) can be prepared by treatment of the intermediate (XIII) with a
functionalized morpholino intermediate (VII) in the presence of adequate base such as
diisopropylethyl amine, solvent such as dimethyl acetamide and heat or under microwave
irradiation.
Scheme 3. General Procedure for synthesis of boronic esters.
o o
\ /
/ \
o o
1 1
R—Br _———» R—-B
XIV catalyst, solvent, base IV
heat
Boronic esters of formula (IV) can be prepared according to Scheme 3 in one step where R1
is as described in a (I). The step involves reacting substituted arylbromide or
heteroarylbromide of formula (XIV) with nacolato)diboron in the presence of a
commercially available palladium catalyst, a t such as dioxane, and at a temperature
g from 80°C to 120°C.
The invention further es any variant of the present processes, in which the reaction
components are used in the form of their salts or optically pure material. Compounds of the
invention and intermediates can also be converted into each other according to methods
lly known to those skilled in the art.
Compounds of the formula (I), in free form or in pharmaceutically acceptable salt form,
hereinafter often referred to as “agents of the invention”, exhibit valuable pharmacological
properties, when tested in vitro, and may, therefore, be useful in medicaments, in therapy or
for use as ch als, for example as tool compounds.
The agents of the invention are inhibitors of mTOR. The inhibiting properties of a compound
of the invention towards mTOR can be evaluated in tests as described hereinafter.
Biological Assays
Test 1: mTOR nding assay based on TR—FRET for recombinant human mTOR
PCT/IBZOlZ/055929
1. 8-point serial dilutions of compounds (10 mM stock) are performed in 90% DMSO in a
384-well "masterplate” and 50 nL is erred onto 384-well assay plates (white polystyrene
small volume; Matrix/Thermo Scientific Cat. No. .
2. The final volume of the assay is 10 pL and the order of addition is as follows:
50 nL of compounds on;
uL of a mixture of GST-mTOR and Europium anti-GST antibody with or without the
Pl3K/mTOR inhibitor Pl-103 (3-(4—(4-morpholinyl)pyrido[3’,2' :4,5]furo[3,2-d]pyrimidin-2—
yl)phenol, Calbiochem);
uL of tracer-314.
incubated for 60 minutes at room temperature.
TR—FRET measured in Biotek Synergy2 reader at:
Excitation 340nm/emission 665nm
Excitation 340nm/emission 620nm
The assay buffer ts of 50 mM HEPES pH 7.5, 5 mM MgCl2, 1 mM EGTA, 0.01%
Pluronic F-127. Tracer-314 (Alexa Fluor® 647-labeled mpetitive kinase inhibitor; Cat.
No. PV6087), Europium anti-GST antibody (Cat. No PV5594) and N-terminally GST-tagged
truncated human mTOR (FRAP1) (Cat. No PV4754) are ble from Invitrogen.
The following final concentrations are used:
3 nM GST—mTOR;
1 nM Europium anti-GST antibody;
+/— 10 pM PI-103; and
nM tracer-314.
The final concentrations of d compounds are 9091; 2730; 910; 273; 91; 27; 9; and 3
nM. The final tration of DMSO is 0.45%
The following controls are used:
High signal: solvent vehicule, GST—mTOR, Eu—anti-GST antibody, tracer-314;
Low signal: solvent vehicule, GST—mTOR, Eu-anti—GST antibody, , -314.
3. leo determinations may be performed as follows:
Raw signal at 340/665 is divided by the raw signal at 340/620 to give an emission ratio.
The Emission ratio is converted to percentage of inhibition for each compound concentration.
IC50 values are calculated by fitting a dal dose-response curve to a plot of assay
readout over compound concentration. All fits and analysis are performed with the program
XLfit4 (ID Business Solutions, Guildford, UK).
Test 2: Cellular mTOR assay
A cell based assay (384-well ) was developed for determination of compound effects
on cellular mTOR kinase activity in MEFs (mouse embryo rasts) cells derived from
mice lacking TSC1 (Tuberosclerosis Complex1) a potent suppressor of mTOR kinase
activity. Due to lack of TSC1 the mTOR kinase is constitutively activated resulting in
permanently ed phosphorylation of Thr 389 of 86 kinase 1 (86K1) which is one of the
downstream targets of mTOR (Kwiatkowski D.J., Zhang H., Bandura J.L. et al. (2002)] A
mouse model of TSC1 reveals sex—dependent lethality from liver hemangiomas, and up-
regulation of p7086 kinase activity in T80 null cells. Hum.Mol.Gen. 11: 525-534).
Day 0 :
Cell seeding .' Subconfluent TSC1-/— MEFs are cultured in DMEM High glucose
supplemented with 10 % Heat Inactivated FCS and 2 % Hepes. mTOR is constitutively active
in these cells leading to permanently enhanced phosphorylation of p7086 kinase. The cells
are harvested by trypsinization, resuspended in growth medium, counted and adjusted to
133,333 cells/ml. 30 pl are added per well to a 384 well-plate using a Multidrop instrument
(Thermo scientific), resulting in 4000 well. The plates are incubated at 37°C / 5% 002
for 20 hours (to allow for settling and adherance to the surface).
Day 1 :
Compound treatment: Eight 3-fold serial dilutions of test-compounds (beginning at 1.8 mM)
are prepared in 90 % DMSO and compiled on 384 well master plates (Greiner). A pan-
pPl3K/mTOR tor (0.8 mM of 8-(6-methoxy—pyridinyl)methy|—1-(4—plperaziny|
trifluoromethyl-phenyl)—1,3-dihydro-imidazo[4,5—c]quinolinone in 90 % DMSO) is added to
the wells for the low control. 90% DMSO is added to the wells for the high controls.
nds are ed as 250 nl shots (Hummingbird) in 384 well-polypropylene
microplates (compound plates). 50 pl of growth medium is added to the compound plates
(dilution 1:200)with the Multidrop. After shaking (1 min at 2000 rpm), 10 pl of the first dilution
is then transferred to the cell plate with a Matrix Plate Mate 2x3 pipettor (final dilution 1:4).
After 1 hour of treatment, medium is removed from the plate and 20 pl of Surefire lysis buffer
is added per well with the rop.
Surefire assay: Cell lysates are frozen for 15 minutes, thawed with shaking and transferred
to the experimental 384 well—Proxiplate (5 l) for the P-P7086K (T389) Surefire assay
(Perkin Elmer #TGR7OS50). The fist mix is ed of the reaction buffer (containing the
specific antibody), the activation buffer and the acceptor beads (40 vol, 10 vol and 1 vol
respectively). 5 pl per well is added to the s with a Zephyr® SPE Workstation (Caliper
Life Sciences) and incubated for 2 hours with shaking at room temperature. After this
PCT/lBZOlZ/055929
incubation time, the second mix of dilution buffer and donor beads (20 vol and 1 vol
respectively) is added to the plate with the same instrument (2 pl/well). After 2 hours, the
plate can be read with an EnVision® Multilabel Reader (Perkin Elmer). Since the beads are
light sensitive, their transfer and incubation is executed in a dark room (greenlight).
Day 2 :
Data analysis .' The raw data is used to generate dose response curves for test compounds
and leo values calculated therefrom.
Test 3: Autophagy assay
Autophagy is a lic pathway that degrades bulk cytosol in lysosomal compartments
enabling amino acids and fatty acids to be recycled. One of the key regulators of agy
is the mammalian target of rapamycin , a conserved serine/threonine kinase which
suppresses the initiation of the autophagic process when nutrients, growth factors and
energy are available. To quantify autophagy induction by mTOR inhibitors, we use a
y-GFP-LC3 reporter which is le to retroviral delivery into mammalian cells,
stable expression and analysis by scence microscopy.
mCherry-GFP-LCB Reporter
The amino acid sequence of the mCherry-GFP-LC3 construct is shown below (SEQ ID NO:
1). The mCherry ce is underlined, GFP sequence is in bold and LC3A sequence is
boxed.
MVSKGEEDNMAI|KEFMRFKVHMEGSVNGHEFEIEGEGEGRPYEGTQTAK
LKVTKGGPLPFAWDlLSPQFMYGSKAYVKHPADiPDYLKLSFPEGFKWER
VMNFEDGGVVTVTQDSSLQDGEFIYKVKLRGTNFPSDGPVMQKKTMGWEA
SSERMYPEDGALKGElKQRLKLKDGGHYDAEVKTTYKAKKPVQLPGAYNV
NI KLDITS HN EDYTIVEQYERAEGRHSTGGMDELYKPVATMVSKGEELFT
GWPILVELDGDVNGHKFSVSGEGEGDATYGKLTLKFICTTGKLPVPWPT
LVTTLTYGVQCFSRYPDHMKQHDFFKSAMPEGYVQERTlFFKDDGNYKTR
AEVKFEGDTLVNRIELKGIDFKEDGNlLGHKLEYNYNSHNWIMADKQKN
GIKVNFKIRHNlEDGSVQLADHYQQNTPlGDGPVLLPDNHYLSTQSALSK
DPNEKRDHMVLLEFVTAAGlTLGMDELYKSGLRSRAQASNSAVD-
FKQRRSFADRCKEVQQlRDQHPSKlPVllERYKGEKQLPVLDKTKFLVPD
LVKl |RRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDED
GFLYMVYASQETFGF
Described hereinafter is an imaging protocol and image recognition algorithm to visualize
and e changes in the autophagic pathway.
Quantification of autoghagy using hig h-content imaging and analysis
1. Day 0: Cell plating. Subconfluent H4 mCherry—GFP—LC3 cells are harvested by
trypsinization, resuspended in growth medium, and counted (H4 cells: Human
neuroglioma cell line (ATCC)). A cell suspension of 66‘000 cells/mL is prepared and 30
uL are added into the wells of a 384-well plate using an electronic hannel pipette.
This results in 2000 cells/well being plated. The cell plates are briefly spun down and
placed at 37°C and 5% C02.
N. Day 1: Compound treatment. nd dose responses are prepared in DMSO. The
dose ses are then diluted 1:50 in medium. 10u| of the diluted compound is added
to 30ul of cells, yielding a final 1:200 dilution of the al compound and final of 0.5%
DMSO. Compound-treatments are performed in triplicates. The 384-well plates are
placed at 37°C and 5% 002. Compound treatment is performed for 16-18 h (see Note 1).
3. Day 2: Cell on. Cells are fixed by adding 10 uL/well 5x concentrated Mirsky‘s
fixative supplemented with L Hoechst33342. This results in a total volume of
50|JL per well and a concentration of 1x ‘s fixative and 5 pg/mL Hoechst33342.
The 384-well plate is briefly spun down and incubated for 1 h at room temperature. Cells
are then washed using a 384~we|l plate washer using a ol which aspirates the
volume down to 10 pL/well before dispensing 100 pL/well 1X TBS. Aspiration and
dispensing steps are repeated 4 times and a final volume of 100 uL/well is left. The plate
is sealed using an adhesive PCR foil.
4. Imaging. The bottom of the plate is cleaned with 70% ethanol and then imaged using the
InCell 1000 automated epifluorescence microscope. 20x ication is used and 4
ent areas (fields) are imaged per well, this typically captures a total of around 400
cells per well. Hoechst33342 images are acquired using an excitation of 360 nm
40x filter), an emission of 460 nM (HQ460_40M filter) and an exposure time of
150 ms. GFP images are acquired using an excitation of 475 nm (S475_20x filter), an
emission of 535 nM (HQ535_50M filter) and an exposure time of 1 s. mCherry images
are acquired using an excitation of 535 nm (HQ535_50X filter), an emission of 620 nM
(H0620_60M filter) and an exposure time of 1 s. A quadruple band pass mirror is used
for all images.
. Image analysis. The InCell Analysis software is used to analyze the images using the
Multi Target Analysis algorithm. First, nuclei are detected in the Hoechst33342 image
using top-hat segmentation and a minimal nuclear area of 50pm2. Cells are defined
using a collar of 10 um around the nuclei. Second, puncta (organelles) are identified in
the mCherry image inside the cells using multi-top-hat segmentation. Third, the mask of
the mCherry pu ncta is transferred onto the GFP image. Fourth, the GFP fluorescence
intensity inside the mCherry puncta mask is measured (reference intensity).
6. The ‘organelles‘ ter reflects mCherry-positive puncta of the mCherry-GFP-LC3
reporter and is used to calculate ‘LC3 puncta/cell’. For this e, the number of
organelles is calculated per cell and averaged over all the cells in a given well ge
per cell basis). y-positive L03 puncta s (y-axis) are plotted against the
compound dose se values (x-axis) and EC50 values are calculated for each
compound. EC50 values represent compound potency in terms of autophagy activation
(e.g. increase in mCherry-positive LC3 puncta count).
Notes
1. Autophagy—modulation and redistribution of mCherry-GFP-LC3 can be already
observed after a compound treatment time of 3-4 h. r, more robust effects are
seen with 16—18 h treatment times.
The compounds of the Examples showed the values presented in Table 1 below when tested
in the above assays.
Table 1
Test 2: T389 cellular Test 3: Autophagy
assay IC50 (nM) E050 (nM)
1010 351
296 471 727
484 319
1682
4743
n.d. = not determined; n.m.— not measurable
As indicated by the test s described before, compounds of the present invention
may be useful for treating diseases, ions and disorders modulated by the inhibition of
the mTOR ; consequently, the compounds of the present invention (including the
compositions and processes used therein) may be used in the manufacture of a medicament
for the therapeutic applications described herein. Hence, another embodiment of the present
invention is a pharmaceutical composition sing a compound of the t invention,
or a pharmaceutically acceptable salt thereof, and a pharmaceutically acceptable excipient,
diluent or carrier.
A typical formulation is prepared by mixing a compound of the present invention and a
carrier, diluent or excipient. Suitable carriers, diluents and ents are well known to those
skilled in the art and include materials such as carbohydrates, waxes, water soluble and/or
ble polymers, hydrophilic or hydrophobic materials, gelatin, oils, solvents, water, and
the like. The particular carrier, diluent or excipient used will depend upon the means and
purpose for which the compound of the present invention is being applied. Solvents are
generally selected based on solvents recognized by persons skilled in the art as safe to be
administered to a mammal. In l, safe solvents are non-toxic aqueous solvents such as
water and other non-toxic ts that are soluble or miscible in water. Suitable aqueous
solvents include water, ethanol, propylene glycol, polyethylene glycols (e.g., PEG400,
PEG300), etc. and mixtures thereof. The formulations may also include one or more buffers,
stabilizing agents, surfactants, wetting agents, lubricating agents, emulsifiers, suspending
agents, preservatives, antioxidants, opaquing agents, glidants, processing aids, colorants,
sweeteners, perfuming agents, flavoring agents and other known additives to e an
elegant presentation of the drug (Le, a compound of the present invention or pharmaceutical
composition thereof) or aid in the manufacturing of the pharmaceutical product (i.e.,
medicament).
The formulations may be prepared using tional dissolution and mixing procedures.
For example, the bulk drug substance (i.e., compound of the present ion or stabilized
form of the compound (e.g., complex with a cyclodextrin derivative or other known
xation agent)) is dissolved in a suitable solvent in the presence of one or more of the
W0 2013/061305 PCT/1B2012/055929
excipients. The compound of the present invention is typically ated into pharmaceutical
dosage forms to provide an easily controllable dosage of the drug and to give the patient an
elegant and easily handleable product.
The pharmaceutical composition (or formulation) for application may be packaged in a
variety of ways depending upon the method used for administering the drug. Generally, an
article for distribution es a container having deposited therein the pharmaceutical
formulation in an appropriate form. Suitable containers are well-known to those d in the
art and include materials such as bottles (plastic and , sachets, ampoules, plastic bags,
metal cylinders, and the like. The container may also include a tamper-proof assemblage to
prevent indiscreet access to the contents of the package. In addition, the container has
deposited thereon a label that describes the ts of the container. The label may also
include appropriate warnings.
In one embodiment, the invention relates to the treatment of cellular proliferative diseases
such as tumor and/or cancerous cell growth mediated by mTOR. Diseases may include
those showing overexpression or amplification of PI3K alpha, Rheb, somatic mutation of
PIKSCA or germline mutations or somatic mutation of PTEN, T801, T802, or ons and
translocation of p85d that serve to up—regulate the p85-p110 complex. In particular, the
nds are useful in the treatment of human or animal (e.g., murine) cancers, including,
for example, sarcoma; lung; bronchus; prostate; breast (including sporadic breast cancers
and sufferers of Cowden e); as; gastrointestinal cancer; colon; rectum; colon
carcinoma; colorectal adenoma; thyroid; liver; intrahepatic bile duct; hepatocellular; adrenal
gland; stomach; gastric; glioma; glioblastoma; endometrial; melanoma; ; renal pelvis;
y bladder; uterine oorpus; uterine ; vagina; ovary; le myeloma; esophagus;
a leukaemia; acute myelogenous leukemia; chronic myelogenous leukemia; lymphocytic
leukemia; myeloid leukemia; brain; a carcinoma of the brain; oral cavity and pharynx; larynx;
small intestine; non-Hodgkin lymphoma; ma; villous colon adenoma; a neoplasia; a
neoplasia of epithelial character; lymphomas; a y oma; basal cell carcinoma;
squamous cell carcinoma; actinic keratosis; tumor diseases, ing solid tumors; a tumor
of the neck or head; polycythemia vera; essential thrombocythemia; myelofibrosis with
myeloid metaplasia; and Walden stroem disease.
In other ments, the condition or disorder is selected from the group consisting of:
polycythemia vera, essential thrombocythemia, myelofibrosis with myeloid metaplasia,
asthma, COPD, ARDS, Loffler's syndrome, eosinophilic pneumonia, tic (in particular
metazoan) infestation (including tropical eosinophilia), bronchopulmonary aspergillosis,
polyarteritis nodosa (including Churg—Strauss syndrome), eosinophilic granuloma, eosinophil-
PCT/132012/055929
d disorders affecting the airways occasioned by drug-reaction, psoriasis, contact
itis, atopic itis, alopecia areata, erythema multiforme, dermatitis herpetiformis,
scleroderma, vitiligo, hypersensitivity is, urticaria, bullous pemphigoid, lupus
erythematosus, pemphisus, epidermolysis bullosa ita, autoimmune haematogical
disorders (e.g. haemolytic anaemia, aplastic anaemia, pure red cell anaemia and idiopathic
thrombocytopenia), systemic lupus erythematosus, ondritis, scleroderma, Wegener
omatosis, dermatomyositis, chronic active hepatitis, myasthenia gravis, Steven-
Johnson syndrome, idiopathic sprue, autoimmune inflammatory bowel disease (e.g.
ulcerative colitis and s disease), endocrine mopathy, Grave's disease,
sarcoidosis, alveolitis, chronic hypersensitivity pneumonitis, multiple sclerosis, primary biliary
cirrhosis, uveitis (anterior and posterior), interstitial lung fibrosis, psoriatic arthritis,
glomerulonephritis, vascular diseases, atherosclerosis, hypertension, deep venous
thrombosis, stroke, dial infarction, unstable angina, thromboembolism, pulmonary
embolism, thrombolytic diseases, acute arterial ischemia, peripheral thrombotic ions,
and coronary artery disease, reperfusion injuries, pathy, such as ic retinopathy or
hyperbaric oxygen-induced retinopathy, and conditions characterized by elevated intraocular
pressure or secretion of ocular aqueous humor, such as glaucoma.
onal syndromes with an ished or potential molecular link to dysregulation of
mTOR kinase activity are, for instance, described in “K. Inoki et al. ; Disregulation of the
TSC-mTOR pathway in human disease, Nature Genetics, vol 37, ; “D.M. Sabatini;
mTOR and cancer: insights into a complex relationship, Nature Reviews, vol. 6, 729-734”;
and in “B.T. sy et al.; Exploiting the Pl3K/Akt pathway for cancer drug discovery,
Nature Reviews, vol. 4, 988—1004”, and are as follows:
0 Organ or tissue transplant rejection, e.g. for the treatment of recipients of eg. heart, lung,
combined heart-lung, liver, kidney, pancreatic, skin or corneal transplants; graft-versus-
host disease, such as following bone marrow transplantation;
0 Restenosis
o Tuberous sclerosis
o Lymphangioleiomyomatosis
o Retinitis pigmentosis and other retinal degenerative disorders
0 Autoimmune diseases including encephalomyelitis, insulin-dependent diabetes mellitus,
lupus, dermatomyositis, tis and tic diseases
. Steroid-resistant acute Lymphoblastic Leukaemia
o Fibrotic diseases including scleroderma, pulmonary fibrosis, renal fibrosis, cystic fibrosis
o Pulmonary hypertension
. lmmunomodulation
. Multiple sclerosis
. VHL syndrome
0 Carney complex
0 Familial adenonamtous polyposis
0 Juvenile polyposis syndrome
. Birt-Hogg-Duke syndrome
0 al hypertrophic cardiomyopathy
o Wolf-Parkinson-White syndrome
. Neurodegenerative disorders such as Parkinson's Disease, Huntington’s Disease,
Alzheimer's Disease and dementias caused by tau mutations, spinocerebellar ataxia type
3, motor neuron disease caused by SOD1 mutations, neuronal ceroid lipofucinoses/Batten
disease (pediatric neurodegeneration)
. Ophthalmological diseases such as wet and dry macular degeneration, uveitis, including
autoimmune uveitis, retinopathy, such as ic retinopathy or hyperbaric oxygen-
induced retinopathy, and glaucoma
. muscle g (atrophy, cachexia) and myopathies such as Danon's disease.
. bacterial and viral infections including M. tuberculosis, group A streptococcus, HSV type |,
HIV infection
0 Neurofibromatosis ing Neurofibromatosis type 1, and
o Peutz-Jeghers syndrome, Cowden's disease.
Compounds with an inhibitory activity on mTORC1 have shown benefit in immunomodulation
and in treating proliferative diseases such as advance renal cell carcinoma or Tubero-
Sclerosis (TSC) germ line mutation ated disorders.
For the above uses the required dosage will of course vary ing on the mode of
administration, the particular ion to be d and the effect desired. In general,
satisfactory results are indicated to be obtained systemically at daily dosages of from about
0.03 to about 100.0 mg/kg per body weight, e.g. about 0.03 to about 10.0 mg/kg per body
. An indicated daily dosage in the larger , e.g. humans, is in the range from
about 0.5 mg to about 3 g, e.g. about 5 mg to about 1.5 g, iently administered, for
example, in divided doses up to four times a day or in retard form. Suitable unit dosage forms
for oral administration comprise from ca. 0.1 to about 500 mg, e.g. about 1.0 to about 500 mg
active ingredient.
In general, compounds of the present invention will be administered as pharmaceutical
compositions by any one of the following routes: oral, systemic (e.g., transdermal, intranasal
or by suppository), or parenteral (e.g., intramuscular, enous or subcutaneous)
administration. The preferred manner of administration is oral using a convenient daily
dosage regimen that can be ed according to the degree of affliction. Compositions can
take the form of tablets, pills, capsules, semisolids, powders, sustained release formulations,
solutions, suspensions, s, aerosols, or any other appropriate compositions. Another
preferred manner for administering compounds of the present invention is inhalation. This is
an effective method for delivering a therapeutic agent directly to the respiratory tract.
Consequently, the invention also provides:
- a method for preventing or treating conditions, ers or diseases mediated by the
activation of the PI3K (e.g. Pl3 kinase alpha) and/or mTOR enzymes e.g. such as
ted above, in a subject in need of such treatment, which method comprises
administering to said subject an ive amount of a compound of the present
ion or a pharmaceutically acceptable salt thereof. In one embodiment, there is
provided a method for preventing or treating cancer, a neurodegenerative disorder or
an lmological e, in a subject in need of such treatment, which method
comprises administering to said subject an effective amount of a nd of the
present invention or a pharmaceutically acceptable salt thereof. In another
embodiment, the neurodegenerative disorder is Parkinson's, Huntington’s or
Alzheimer's Disease. In yet another embodiment, the neurodegenerative disorder is
Huntington’s Disease.
- a compound of the present invention, or a pharmaceutically acceptable salt thereof, for
use as a medicament, e.g. in any of the ions, ers or diseases indicated
, in particular for the use in one or more phosphatidylinositol 3-kinase mediated
diseases. In one embodiment, there is provided a compound of the present invention,
or a pharmaceutically acceptable salt thereof, for use in the treatment or prevention of
cancer, a neurodegenerative disorder or an ophthalmological e. In another
embodiment, the egenerative disorder is Parkinson's, Huntington's or
Alzheimer's Disease. In yet another embodiment, the neurodegenerative disorder is
Huntington’s Disease.
- the use of a compound of the present invention, or a pharmaceutically acceptable salt
f, as an active pharmaceutical ingredient in a medicament, e.g. for the ent
or prevention of any of the conditions, disorders or diseases indicated herein, in
particular for the treatment or prevention of one or more phosphatidylinositol 3-kinase
mediated diseases. In one embodiment, there is provided the use of a compound of the
present invention, or a pharmaceutically acceptable salt thereof, as an active
pharmaceutical ient in a medicament for the treatment or prevention of , a
neurodegenerative disorder or an ophthalmological disease. In another embodiment,
2012/055929
the neurodegenerative disorder is Parkinson's, Huntington’s or Alzheimer's Disease. In
yet another embodiment, the neurodegenerative disorder is Huntington’s Disease.
- the use of a compound of the present invention, or a pharmaceutically acceptable salt
thereof, for the cture of a medicament for the treatment or prevention of one or
more phosphatidylinositol se mediated diseases. In one embodiment, there is
provided the use of a compound of the present invention, or a pharmaceutically
acceptable salt f, for the manufacture of a medicament for the treatment or
prevention of cancer, a neurodegenerative disorder or an ophthalmological disease. In
another embodiment, the egenerative disorder is Parkinson's, Huntington's or
Alzheimer's e. In yet another embodiment, the neurodegenerative disorder is
Huntington’s Disease.
An agent of the invention can be administered as sole active pharmaceutical ingredient or as
a combination with at least one other active pharmaceutical ingredient effective, e. g., in the
treatment or prevention of cancer or a neurodegenerative disorder. Such a pharmaceutical
ation may be in the form of a unit dosage form, which unit dosage form comprises a
predetermined quantity of each of the at least two active ents in association with at
least one pharmaceutically acceptable excipient, diluent or carrier. Alternatively, the
pharmaceutical combination may be in the form of a package comprising the at least two
active components separately, e. g. a pack or ser-device adapted for the itant
or separate administration of the at least two active components, in which these active
components are separately arranged. In a further aspect, the invention relates to such
pharmaceutical combinations.
In a further aspect, the invention therefore s to a combination product comprising an
agent of the invention, or a ceutically acceptable salt thereof, and another eutic
agent
In one embodiment, the combination product is a pharmaceutical composition comprising an
agent of the invention, or a pharmaceutically acceptable salt thereof, and another therapeutic
agent, and a pharmaceutically acceptable excipient, diluent or carrier.
In one ment, the combination product is a kit comprising two or more separate
pharmaceutical compositions, at least one of which contains an agent of the invention. In one
embodiment, the kit ses means for separately ing said compositions, such as a
container, divided bottle, or divided foil packet. An example of such a kit is a blister pack, as
typically used for the packaging of tablets, capsules and the like. The kit of the invention may
be used for administering different dosage forms, for example, oral and eral, for
administering the separate compositions at different dosage intervals, or for titrating the
separate compositions against one another. To assist compliance, the kit of the invention
typically comprises directions for administration.
In view of their mTOR inhibitory activity, nds of the invention, either alone or
combination, may be useful in the treatment of cancer. In one embodiment, the invention
therefore relates to a compound of the invention, or a pharmaceutically acceptable salt
thereof, in combination with another therapeutic agent wherein the other therapeutic agent is
selected from the group of anticancer agents set forth below:
(a) Kinase Inhibitors: for example inhibitors of Epidermal Growth Factor Receptor (EGFR)
kinases such as small molecule quinazolines, including gefitinib (US 5457105, US 5616582,
and US 5770599), ZD-6474 (WO 51), erlotinib (Tarceva®, US 498 and WO
96/30347), and Iapatinib (US 6,727,256 and WO 02/02552); Vascular Endothelial Growth
Factor Reoeptor ) kinase tors, including SU-11248 (WO 01/60814), SU 5416
(US 5,883,113 and WO 99/61422), SU 6668 (US 113 and WO 99/61422), CHlR-258
(US 6,605,617 and US 6,774,237), vatalanib or PTK—787 (US 6,258,812), VEGF-Trap (WO
02/57423), B43-Genistein (WC-09606116), fenretinide (retinoic acid p—hydroxyphenylamine)
(US 4,323,581 ), IM—862 (WO 02/62826), bevacizumab or Avastin® (W0 94/10202), KRN-
951, 3—[5—(methylsulfonylpiperadine methyl)—indolyl]-quinolone, AG-13736 and AG-13925,
pyrrolo[2,1-t][1,2,4]triazines, ZK-304709, Veglin®, 601, EG-004, CEP-701 (US
,621,100), Cand5 (WO 04/09769); Erb2 ne kinase inhibitors such as umab (WO
01/00245), trastuzumab, and rituximab; Akt protein kinase inhibitors, such as RX-0201;
Protein Kinase C (PKC) tors, such as LY-317615 (WO 95/17182), and perifosine (US
2003171303); Raf/Map/MEK/Ras kinase inhibitors including sorafenib (BAY 43-9006), ARQ-
350RP, LErafAON, BMS-354825 AMG-548, and others disclosed in WO 72;
Fibroblast Growth Factor Receptor (FGFR) kinase inhibitors; Cell Dependent Kinase (CDK)
inhibitors, including CYC-202 or roscovitine (WO 97/20842 and WO 99/02162); Platelet-
Derived Growth Factor Receptor (PDGFR) kinase inhibitors such as CHlR-258, 3G3 mAb,
AG—13736, SU-11248 and SU6668; and Bcr-Abl kinase tors and fusion proteins such as
STI-571 or Gleevec® (imatinib).
(b) Anti-Estrogens: such as Selective Estrogen Receptor Modulators (SERMs) including
tamoxifen, toremifene, fene; aromatase inhibitors ing Arimidex® or anastrozole;
Estrogen Receptor Downregulators (ERDs) including Faslodex® or trant.
(c) ndrogens: such as flutamide, bicalutamide, finasteride, aminoglutethamide,
ketoconazole, and corticosteroids.
(d) Other Inhibitors: such as protein farnesyl transferase inhibitors including tipifarnib or R-
115777 (US 2003134846 and WO 97/21701), BMS-214662. AZD-3409, and 7;
topoisomerase tors including merbarone and difiomotecan (BM-80915); mitotic kinesin
spindle n (KSP) inhibitors including SB—743921 and MKl-833; proteasome modulators
such as bortezomib or e® (US 5,780,454), XL-784; and cyclooxygenase 2 (COX-2)
inhibitors including non-steroidal antiinflammatory drugs I (NSAle).
(e) Cancer Chemotherapeutic Drugs: such as anastrozole (Arimidex®), bicalutamide
(Casodex®), bleomycin sulfate (Blenoxane®), busulfan (Myleran®), busulfan injection
fex®), capecitabine (Xeloda®), N4—pentoxycarbonyldeoxyfluorocytidine,
carboplatin (Paraplatin®), carmustine (BiCNU®), chlorambucil (Leukeran®), cisplatin
(Platinol®), bine (Leustatin®), hosphamide (Cytoxan® or Neosar®), cytarabine,
cytosine arabinoside ar-U®), cytarabine liposome injection (DepoCyt®), dacarbazine
(DTlC—Dome®), omycin (Actinomycin D, Cosmegan), daunorubicin hydrochloride
(Cerubidine®), daunorubicin citrate liposome injection Xome®), dexamethasone,
docetaxel (Taxotere®), doxorubicin hydrochloride (Adriamycin®, Rubex®), etoposide
(Vepesid®), fludarabine phosphate (Fludara®), 5-fluorouracil (Adrucil®, Efudex®), flutamide
(Eulexin®), tezacitibine, Gemcitabine (difluorodeoxycitidine), hydroxyurea (Hydrea®),
ldarubicin (ldamycin®), ifosfamide (IFEX®), irinotecan (Camptosar®), L—asparaginase
(ELSPAR®), orin calcium, melphalan (Alkeran®), 6-mercaptopurine (Purinethol®),
methotrexate (Folex®), mitoxantrone (Novantrone®), rg, paclitaxel (Taxol®), phoenix
(Yttrium90/MX-DTPA), pentostatin, polifeprosan 20 with carmustine implant (Gliadel®),
tamoxifen citrate (Nolvadex®), teniposide (Vumon®), 6-thioguanine, thiotepa, tirapazamine
(Tirazone®), topotecan hydrochloride for injection (Hycamptin®), vinblastine (Velban®),
stine (Oncovin®), and vinorelbine bine®).
(f) Alkylating Agents: such as VNP-40101 M or izine, latin (US 4,169,846, WO
03/24978 and WO 03/04505), glufosfamide, mafosfamide, etopophos (US 5,041,424),
prednimustine; lfan; busulfan; irofluven (acylfulvene); penclomedine; pyrazoloacridine
(PD-115934); OG-benzylguanine; decitabine (5-azadeoxycytidine); brostallicin; mitomycin
C (MitoExtra); TLK—286 (Telcyta®); lomide; trabectedin (US 5,478,932); AP-5280
(Platinate formulation of Cisplatin); porfiromycin; and clearazide (meclorethamine).
(g) ing : such as tetrathiomolybdate (WO 01/60814); RP—697; Chimeric T8466
(cT84.66); gadofosveset (Vasovist®); deferoxamine; and cin optionally in combination
with electorporation (EPT).
(h) Biological Response Modifiers: such as immune modulators, including staurosprine and
macrocyclic analogs thereof, including , CEP-701 and midostaurin (see WO
02/30941, WO 81, WO 89/07105, US 5,621,100, WO 93/07153, WO 01/04125, WO
02/30941, WO 93/08809, WO 94/06799, WO 00/27422, WO 96/13506 and WO 88/07045);
mine (WO 55); DA—9601 (WO 98/04541 and US 6,025,387); alemtuzumab;
interferons (e.g. lFN-a, IFN-b etc.); interleukins, specifically lL-2 or aldesleukin as well as IL-
1, lL-3, IL-4, |L-5, |L-6, |L-7, lL-8, |L-9, |L-10, |L-11, |L-12, and active biological variants
thereof having amino acid sequences greater than 70% of the native human sequence;
amine (Hexalen®); SU 101 or leflunomide (WO 04/06834 and US 6,331,555);
imidazoquinolines such as resiquimod and imiquimod (US 4,689,338, 5,389,640, 5,268,376,
4,929,624, 5,266,575, 5,352,784, 5,494,916, 5,482,936, 5,346,905, 5,395,937, 5,238,944,
and 5,525,612); and SMlPs, ing benzazoles, anthraquinones, thiosemicarbazones, and
Itryptanthrins (WO 04/87153, WO 04/64759, and WO 04/60308).
(i) Cancer Vaccines: including Avicine® (Tetrahedron Lett. 26:2269-70 (1974)); oregovomab
(OvaRex®); Theratope® (STn—KLH); Melanoma Vaccines; Gl—4000 series (GI-4014, Gl-
4015, and Gl-4016), which are directed to five ons in the Ras protein; GlioVax-1;
MelaVaX; Advexin® or |NGN-201 (WO 95/12660); Sig/E7/LAMP-1, encoding HPV-16 E7;
MAGE-3 Vaccine or M3TK (WO 94/05304); HER-2VAX; ACTIVE, which stimulates T-cells
specific for tumors; GM-CSF cancer vaccine; and Listeria monocytogenes-based vaccines.
(j) Antisense y: including antisense itions, such as AEG-35156 40);
AP-12009 and AP-11014 (TGF-beta2-specific antisense ucleotides); AVI-4126; AVI—
4557; 72; oblimersen (Genasense®); JFSZ; aprinocarsen (WO 97/29780); GTI-2040
(R2 ribonucleotide reductase mRNA antisense oligo) (WO 98/05769); GTl-2501 (WO
98l05769); liposome—encapsulated c-Raf antisense oligodeoxynucleotides (LErafAON) (WO
98/43095); and Sirna-027 (RNAi-based therapeutic targeting VEGFR—1 mRNA).
Thus, in another embodiment, the invention provides a pharmaceutical composition
comprising;
i) a compound of the invention, or a pharmaceutically acceptable salt thereof, and
ii) at least one compound selected from
(a) kinase inhibitors,
(b) anti-estrog ens,
(c) ndrogens,
(e) cancer herapeutic drugs,
(f) alkylating agents,
(9) chelating agents,
(h) ical response modifiers, and
ii) one or more pharmaceutically acceptable ent, diluent or carrier.
WO 61305
In one embodiment, the invention provides a pharmaceutical composition comprising a
compound of the invention, or a pharmaceutically acceptable salt thereof, and everolimus
(Afinitor®).
In view of their mTOR inhibitory activity, compounds of the invention, either alone or
combination, may be useful in the treatment of neurodegenerative disorders. in one
embodiment, the invention therefore relates to a compound of the invention, or a
pharmaceutically able salt thereof, in combination with another therapeutic agent
n the other therapeutic agent is selected from:
(a) cholinesterase inhibitors: such as donepezil (AriceptT’V'), rivastigmine (ExelonTM)
and galantamine yneTM);
(b) glutamate antagonists: such as memantine daTM);
(c) antidepressant medications: for low mood and irritability such as citalopram (Celexa TM),
fluoxetine (ProzacTM), paroxeine (PaxilTM), sertraline (ZoloftT'V‘) and trazodone (DesyrelTM);
(d) anxiolytics: for anxiety, restlessness, verbally disruptive behavior and resistance, such as
lorazepam (AtivanTM) and oxazepam (SeraxTM);
(e) antipsychotic medications: for hallucinations, ons, aggression, agitation, hostility
and uncooperativeness, such as aripiprazole (AbilifyTM), clozapine (ClozarilT'V'), ridol
(HaldolTM), olanzapine (ZyprexaTM), quetiapine (SeroquelTM), risperidone rdalTM) and
ziprasidone nTM);
(f) mood stabilizers: such as carbamazepine (TegretolTM) and divalproex (DepakoteTM);
(g) nicotinic apha — 7 agonists;
(h) mGluR5 antagonists;
(i) H3 agonists; and
(j) amyloid therapy vaccines.
Thus, in another embodiment, the invention provides a pharmaceutical composition
comprising;
i) a compound of the invention, or a pharmaceutically acceptable salt thereof, and
ii) at least one compound selected from
(a) acetylcholinesterase inhibitors,
(b) glutamate antagonists,
W0 2013/061305 PCT/1B2012/055929
(c) antidepressant medications,
(d) anxiolytics,
(e) ychotic medications,
(f) mood stabilizers,
(g) nicotinic apha — 7 agonists,
(h) mGIuR5 antagonists,
(i) H3 agonists, and
ii) one or more pharmaceutically acceptable excipient, diluent or carrier.
Consequently, the invention provides in further aspects
- a pharmaceutical combination, e.g. for use in any of the methods described ,
comprising a therapeutically effective amount of a compound of the present ion,
or a pharmaceutically able salt thereof, and another therapeutic agent, for
simultaneous or sequential administration.
- a combination product comprising a compound of the present invention, or a
pharmaceutically acceptable salt thereof, and another therapeutic agent.
- a combination product comprising a compound of the present invention, or a
pharmaceutically acceptable salt thereof, and another therapeutic agent as a combined
preparation for use in therapy, e.g. for use in any of the therapies described herein. In
one embodiment, the therapy is the ent or prevention of cancer or a
neurodegenerative disorder. In another embodiment, the therapy is the treatment or
prevention of Parkinson's, Huntington's or Alzheimer's Disease. in yet another
embodiment, the therapy is the treatment or prevention of Huntington’s e.
- a ceutical ition comprising a compound of the present invention, or a
pharmaceutically acceptable salt thereof, another therapeutic agent, and a
ceutically able excipient, diluent or carrier.
- a method as defined above sing co-administration, e.g. concomitantly or in
sequence, of a therapeutically effective amount of a compound of the present
invention, or a pharmaceutically acceptable salt thereof, and another therapeutic agent,
e.g. as ted above.
- a pharmaceutical combination, e.g. a kit, comprising a) a first agent which is a compound
of the present invention as disclosed herein, or a pharmaceutically acceptable salt
thereof, and b) another therapeutic agent, e.g. as indicated above; whereby such kit
may comprise ctions for its administration.
The following examples of compounds of the present ion illustrate the invention.
Methods for preparing such nds are described hereinafter.
PCT/lB2012/055929
EXAMPLES
Abbreviations
EtOAc ethyl acetate
AcOH acetic acid
brs broad singlet
CDCI; deuterated form
CsF cesium fluoride
d doublet
CHZClg dichloromethane
DIPEA di-isopropylethyl amine
DMSO dimethylsulfoxide
DMSO—da deuterated dimethylsulfoxide
dppf 1,1'-Bis(diphenylphosphino)ferrocene
EtOH ethanol
LC—MS liquid chromatography-mass spectrometry
MeOH methanol
m multiplet
MS mass ometry
NEta triethylamine
NMR nuclear magnetic resonance
1HNMR proton nuclear magnetic resonance
3)4 tetrakis(triphenylphosphine)palladium
PPh3 triphenyl phosphine
s singlet
TFA trifluoroacetic acid
THF tetrahydrofu ran
UV ultraviolet
EtOH ethanol
CDCIa deuterated chloroform
Si02 silica gel
M9804 magnesium sulfate
Na2804 sodium sulfate
Pd palladium
aq aqueous
TBME tertbutylmethylether
mL milliliter
PCT/lBZOlZ/055929
LDA mdiisopropylamine
Raney—Ni Raney—nickel
ax axial
eq rial
MHz megahertz
Rt retention time
Na23203 sodium thiosulfate
ANALYTICAL METHODS
NMR: proton spectra are recorded on a Bruker Avancespectrometer or Varian Oxford 400
spectrometer unless otherwise noted. Chemical shifts are reported in ppm relative to
dimethyl sulfoxide (6 2.50), or chloroform (6 7.26). A small amount of the dry sample (2-5
mg) is dissolved in an riate deuterated solvent (1 mL).
LC/MS:
The sample is dissolved in suitable solvent such as MeCN, DMSO or MeOH and is injected
directly into the column using an automated sample handler. The analysis is performed using
one of the following methods:
LC-MS-Method 1
Column: Acquity HSS T3, 1.8pm, 2.1 x 50 mm;
Eluent: Water (+ 0.05% formic acid + 3.75 mM ammonium acetate) : acetonitrile (+ 0.04%
formic acid), from 98:2 to 2:98 in 1.4 min, hold 98% for 0.75 min;
Flow rate/Temperature: 1.2 ml/min at 50°C.
LC-MS-Method 2
Column: Machery—Nagel Nucleosil 100-3 C18 (70 x 4.6 mm);
Solvents/Gradient: A: 0.05% TFA in water; B: 0.05% TFA in acetonitrile; from 95% A/ 5% B
to 5% A / 95% B in 8min.
Flow emperature: 1.4 ml/min at 45°C.
Synthesis of amine intermediates
The amine intermediates are either commercially available or may be ed as described
in the literature, or in an analogous , or can be prepared as described hereafter, or in
an analogous manner.
Synthesis of ic amine intermediates
W0 2013/061305
ic amine 1: 3-Hydroxyaza-bicyclo[3.2.1Joctane-S-carboxylic acid tert-butyl
ester
w< Av WK Am.
RT,——>24h . \f3%“
O O 0
To a solution of 3-oxoaza-bicyclo[3.2.1]octanecarboxylic acid tert—butyl ester (1.03 g,
4.57 mmol) in EtOH (20 mL) was added NaBH4 dropwise. The e was stirred for 4.5
hours at room temperature under nitrogen, followed by a second addition of NaBH4 (0.36 g,
9.60 mmol). The reaction was stirred at room ature for 17.5 hours and a last addition
of NaBH4 (0.36 g, 9.60 mmol) was performed. The solution was stirred at room temperature
for 2 hours. then a saturated solution of ammonium chloride was added and the aqueous
phase was extracted with EtOAc. The combined organic fractions were dried over NaZSO4,
filtered and concentrated. The crude was purified by flash chromatography on silica gel
using cyclohexane/EtOAc as eluent to yield, after evaporation, to the axial and rial
isomers (186 mg, 17.9%) and (205 mg, 19.7%) as white solids. 1H NMR (600 MHZ, CDCI3):
4.57 (d, 1H), 4.02 (m, 2H), 3.89 (d, 1Hax), 1.89- 1.71 (m, 5H), 1.65 - 1.54 (m, 1H), 1.47 -
1.28 (m, 11H)and 4.60 (d, 1H) 3.99 (m, 2H), 3.91 (m, 1Heq), 2.18 -2.03 (m, 2H), 1.92 - 1.72
(m, 4H), 1.67 — 1.56 (m, 2H), 1.39 (s, 9H)
Bicclic amine 2: 8-Aza-bicyclo[3.2.1]octanol
\l< NM HCI 4M in dioxane ”A:
CH3CN,70°C, 1h ; 0H
A solution of HCI (4N in dioxane,0.82 mL, 3.27 mmol) was added to a suspension of 3-
hydroxyaza-bicyclo[3.2.1]octane-8—carboxylic acid tert—butyl ester in acetonitrile. The
mixture was stirred at 70°C for 1 hour, cooled down and concentrated. The product (138 mg,
93%) was isolated as a hydrochloric acid salt.
1H NMR (600 MHz, : 9.07 —- 8.49 (m, 1H), 3.94 (m, 2H), 3.85 (m, 1H), 1.97 — 1.74 (m
6H), 1.60 (t, 2H)
The axial isomer (137 mg, 93%) was ed in the same way.
1H NMR (600 MHz, CDCIa): 9.01 — 8.44 (m, 1H), 3.89 (m, 3H), 2.29 (d, 2H), 2.07 (dt, 2H),
1.96 - 1.84 (m, 2H), 1.83 -1.71 (m, 2H)
012/055929
Synthesis of indole intermediates
The indole ediates are either commercially available or may be prepared as described
in the literature, or in an analogous manner, or can be prepared as described hereafter, or in
an analogous manner.
lndole 1: 4-Bromomethoxy-1H-indole
\o :2
(a) N-(3-Bromomethoxy-phenyl)-N-hydroxy-acetamide
3-Bromonitroanisole (1.5 g, 6.46 mmol) was dissolved in 20 mL of 1,2—dichloroethane and
mL of ethanol, and the mixture was cooled to 0 °C. Ni (30 mg) and ine
e (0.79 mL, 12.9 mmol) were added within 10 minutes, and the reaction was stirred for
4 hours at room temperature, when 50 mg of Raney-Ni were added. After stirring for 16
hours, another 50 mg of Raney—Ni were added, and after further ng for 4 hours, r
50 mg of Raney—Ni were added. Stirring was continued for 4 hours at room temperature,
when the starting material had completely disappeared. The reaction mixture was filtered
through celite. and the solvent was removed under reduced pressure to provide N-(3-bromo-
-methoxy-pheny|)-N-hydroxylamine as a solid, which was dissolved in 80 ml of toluene.
Sodium bicarbonate (597 mg, 7.11 mmol) was added, followed by acetyl chloride (0.51 mL,
7.11 mol). Stirring at room temperature was continued for 20 hours. The reaction e
was then filtered and concentrated under reduced pressure. The residue was purified by
column chromatography (40 gSiO2; EtOAc/heptane in a gradient from 5/95 to 1/3) to yield the
title compound as a solid (360 mg, 21% over 2 steps). LC-MS at 254 nm; [M+H] 2600/2621;
Rt 0.82 min; (LCMS method 1). 1H-NMR (600 MHz; DMSO-ds):10.85 (brs, 1H), 7.50 (dd, 1H),
7.26 (dd, 1H), 6.94 (dd, 1H), 3.77 (s, 3H), 2.22 (s, 3H).
(b) 4-Bromomethoxy-1H-indole
N-(3-Bromomethoxy—phenyl)—N-hydroxy-acetamide (360 mg, 1.384 mmol) was dissolved
in vinyl acetate (1.92 mL, 20.8 mmol), and LideCl4 (18.2 mg, 69 umol) was added. The
reaction mixture was stirred for 3 hours at 60 °C. The reaction mixture was diluted with
EtOAc and brine; the organic layer was separated and concentrated under reduced pressure
to give a solid, which was dissolved in 20 mL of MeOH. 1N aqueous NaOH (2.61 mL, 2.61
mmol) was added, and the reaction was stirred for two hours at room temperature. The
reaction mixture was quenched by addition of2 N s HCI (1.3 mL, 2.6 mmol), followed
by addition of 500 mg of N32003. After addition of 50 mL of EtOAc, the organic layers were
separated, dried over NaZSO4, filtered, and concentrated. The e was purified by
column chromatography (20 g Si02, EtOAc/heptane in a gradient from 0/100 to 1/4) to yield
the title compound as a liquid (145 mg, 46% over 2 steps). 1H-NMR (600 MHz; DMSO-de):
11.26 (hrs, 1H), 7.31 (dd, 1H), 6.93 (d, 1H), 6.90 (d, 1H), 6.29 (dd, 1H), 3.78 (s, 3H).
lndole 2: 4-Chlorofluoro-1H-indole
11 :2
(a) 1-Chlorofluoronitro-benzene
Sodium perborate tetrahydrate (7.699, 50.0 mmol) was suspended in 30 mL of acetic acid,
and this suspension was warmed to 55 °C. rofluoroaniline (1.469, 10 mmol) was
dissolved in 20 mL of acetic acid and added within one hour. The reaction was stirred for 1
hour at 55 °C and then cooled to room temperature. 300 mL of TBME was added, and the
reaction mixture was filtered. The organic layer was washed with brine, followed by 20 mL of
aqueous Nazszoa, followed by brine. The organic layer was dried over NaZSO4 and
concentrated under reduced pressure to give a residue, which was purified by column
tography (40 g SiOz; cyclohexane) to yield the title compound as a solid (320 mg,
18%). 1H—NMR (400 MHz; DMSO—d6)28.20 (s, 1H), 8.18 (d, 1H), 8.07 (d, 1H).
(b) hlorofluoro-phenyl)-N-hydroxy-acetamide
1-Chlorofluoronitro-benzene (320 mg, 1.82 mmol) was dissolved in 5 mL of 1,2-
dichloroethane and 5 mL of ethanol, and the mixture was cooled to 0 °C. Raney-Ni (30 mg,
2.0 mmol) and hydrazine hydrate (0.11 mL, 1.82 mmol) were added within 10 minutes, and
the reaction was stirred for 4 hours at room temperature, when 50 mg of Raney—Ni were
added. After stirring for 16 hours, another 50 mg of Raney—Ni were added, and after further
stirring for 4 hours, another 50 mg of Raney—Ni were added. ng was continued for 4
hours at room temperature, when the starting material had completely disappeared. The
reaction mixture was filtered through celite, and the t was removed under reduced
pressure to provide N-(3-bromofluoro-phenyl)-N-hydroxylamine as a solid, which was
dissolved in 15 ml of toluene. Sodium bicarbonate (160 mg, 1.91 mmol) was added, followed
by acetyl chloride (136 uL, 1.91 mmol) in 0.5 mL of toluene. Stirring at room ature was
ued for 20 hours. The reaction mixture was then filtered and concentrated under
reduced re. The residue was d by column chromatography (4O gSiOz; EtOAc/
heptane in a gradient from 5/95 to 1/3) to yield the title compound as a solid (214 mg, 53%
over 2 steps). LC-MS at 254nm; [M+H] 204.1; Rt 0.83 min; (LCMS method 1). 1H-NMR
(DMSO-de): 10.95 (s, 1H), 7.62 (s, 1H), 7.51 (dd, 1H), 7.19 (d, 1H), 2.24 (s, 3H).
(c) 4-Chlorofluoro-1H-indole
N-(3-Chlorofluoro-phenyl)-N-hydroxy-acetamide (200 mg, 982 umol) was dissolved in vinyl
acetate (1.81 mL, 19.6 mmol), and LigPdCl4 (25.7 mg, 98 umol) was added. The reaction
mixture was stirred for 3 hr at 60 °C. The reaction mixture was diluted with EtOAc and brine;
the organic layer was separated and concentrated under reduced pressure to give a solid,
which was dissolved in 8 mL of MeOH. 1N aqueous NaOH (1.89 mL, 1.89 mmol) was added,
and the reaction was stirred for two hours at room temperature. The reaction mixture was
quenched by addition of 2 N aqueous HCI (0.95 mL, 1.9 mmol), followed by addition of 300
mg of NaZCO3. After addition of 50 mL of EtOAc, the organic layers were separated, dried
over NaZSO4, filtered, and concentrated. The residue was purified by column
tography (12 gSiOZ; EtOAc /heptane in a gradient from 0/100 to 1/4) to yield the title
nd as a liquid (72 mg, 45% over 2 steps). 1H-NMR (DMSO-ds): 11.52 (brs, 1H), 7.45
(d, 1H), 7.20 (d, 1H), 7.05 (d, 1H), 6.45 (d, 1H).
Synthesis of boronic ester intermediates
The boronic ester intermediates used in the preparation of compounds of the present
invention are either commercially available or may be prepared as described in the literature,
or in an ous manner, or can be prepared as described ter, or in an analogous
Boronic ester 1: 6-Methoxy(4,4,5,5-tetramethyI-[1,3,2]dioxaborolanyl)-1H-indole
To a on of 4-bromomethoxy-1H-indole (200 mg, 885 umol) in dioxane (5 mL) was
added under argon bis(pinacolato)diboron (247 mg, 973 pmol)followed by
tricyclohexylphosphine (14.9 mg, 53 umol), bis(dibenzylideneacetone)Pd (15.3 mg, 27 pmol)
and potassium e (130 mg, 1.33 mmol). The reaction mixture was stirred for 18 hours at
65 °C under argon. The reaction mixture was then diluted by addition of 30 ml of EtOAc and
ml of brine. The organic solvents were separated, dried over , filtered, and
concentrated under d pressure. The residue was purified by column chromatography
(20 g of SiOz, tertbutylmethylether/heptane in a ratio of 3/7) to give the product (190 mg,
79%). 1H-NMR (DMSO-de): 10.89 (brs, 1H), 7.22 (dd, 1H), 7.03 (dd, 1H), 7.00 (d, 1H), 6.64
(dd, 1H), 3.77 (s, 3H), 1.33 (s, 12H).
Examgle 1: 2,6-Bis-((R)methyl-morpholinyl)pyridinyl-9H-purine
W0 2013/061305
a) 2-Chloro((R)methyl-morpholinyl)-9H-purine
2,6-Dichloro-9H-purine (2.36 g, 12.5 mmol), (R)—3-methylmorpholin hydrochloride (1.89 g,
13.8 mmol), and diisopropylethylamine (5.46 mL, 31.3 mmol) were dissolved in 15 mL of
panol, and the reaction mixture was stirred for 18 hours at 75 °C. The on mixture
was then diluted with 200 mL of CHZCIZ. The organic solvents were washed with aqueous
Nagcoa, followed by water and brine. Drying over Na2804, filtering and concentration under
reduced pressure gave a residue, which was purified by column chromatography (150 g
Si02, CchlzlEtOH/aq NH3 in a ratio of 96/4/01) to give the product as a solid (2.87 g, 91%).
LC-MS at 254 nm; [M+H] 2541/2561; Rt 0.72 min; (LCMS method 1).
1H NMR (DMSO—de): 13.25 (1H, brs), 8.17 (1H, s), 6.0—4.5 (brs, 2H), 4.0—3.0 (brs, 1H), 3.96
(dd, 1H), 3.76 (d, 1H), 3.67 (dd, 1H), 3.51 (ddd,1H), 1.31 (d, 3H)
b) 2,6-Bis-((R)methyl-morpholinyl)-9H-purine
2-ChIoro((R)—3-methy|—morpholinyl)-9H-purine (1.02 g, 4 mmol), ropylethylamine
(1.40 mL, 8 mmol), and (R)—3-methylmorpholin hydrochloride (826 mg, 6 mmol) were stirred
in 2-butanol (5 mL) in a closed microwave tube under argon at 50 °C, until all ingredients
were dissolved. The reaction was then stirred at 180 °C for 100 hours. The reaction mixture
was then cooled to room temperature and diluted with 200 mL of CHQCIQ.
The organic layer was washed with aqueous Na2003 and brine. Drying over NaZSO4, filtering
and tration under reduced pressure gave a residue, which was purified by column
chromatography (120 g SiOz, CH2Cl2/EtOHlaqueous NHa in a gradient with a ratio from
100/0/0.1 to 1) to give the t as a foam (1.11 g, 87%).
LC—MS at 254nm; [M+H] 319.0; Rt 0.71 min; (LCMS method 1).
1H NMR(DMSO—d6): 12.44 (s, 1H), 7.77 (s, 1H), 6.0-4.5 (brs, 2H), 4.51 (dd, 1H), 4.15 (dd,
1H), 0 (brs, 1H), 3.94 (dd, 1H), 3.89 (dd, 1H), 3.73 (d, 1H), 3.69 (d, 1H), 3.65 (dd, 1H),
3.58 (dd, 1H), 3.50 (ddd, 1H), 3.42 (dd, 1H), 3.07 (ddd, 1H), 1.27 (d, 3 H) 1.15 (d, 3 H).
c) 2,6-Bis-((R)methy|-morphoIinyl)(tetrahydro-pyranyl)-9H-purine
2,6-Bis-((R)—3-methyI-morpho|iny|)-9H-purine (600 mg, 1.89 mmol) was dissolved in
EtOAc (25 mL) under argon. After addition of 3,4-dihydro—2H-pyrane (172 pl, 1.89 mmol),
trifluoro acetic acid anhydride (27 pl, 188 umol), and trifluoro acetic acid (319 pl, 4.15 mmol),
the reaction mixture was heated to 70 °C. After 6 hours, 3,4-dihydro-2H-pyrane (1.44 mL,
.7 mmol) was added. The reaction was then stirred for 22 hours at 70 °C and then cooled
to room temperature. 500 mg of solid Na2C03 was added and stirring continued for 10
s. The reaction mixture was diluted with EtOAc, the organic layer was separated, dried
over , filtered and concentrated under reduced pressure to give a residue, which was
ed by column chromatography (40 g SiOz, heptane/EtOAc in a gradient from 9/1 to 2/3)
to give the product as a foam (600 mg, 79%).
LC—MS at 254nm; [M+H] 403.3; Rt 1.11 min; (LCMS method 1).
d) 8-Bromo-2,6-bis-((R)methyl-morpholinyI)(tetrahydro-pyran-Z-yl)-9H-purine
ropylamine (290 pl, 2.04 mmol) was dissolved in 4 mL of THF at -60 °C, when
butyllithium in hexane was added (1.27 mL, 2.04 mmol) to form LDA. 2,6-Bis-((R)methyl-
morpholinyI)—9—(tetrahydro-pyran—2—yI)—9H—purine (585 mg, 1.45 mmol) was dissolved in 8
mL of THF and added to the reaction e at — 78°C within 10 minutes. The on was
stirred for 1 hour at — 78 °C. Dibromotetrachloroethane (947 mg, 2.91 mmol) in 4 mL of THF
was added within 10 minutes. The reaction was stirred for 2 hours at — 78°C. The reaction
was quenched by addition of saturated aqueous NH4Cl and warmed to room ature.
The mixture was diluted with 80 mL of EtOAc and 50 mL of brine. The organic layers were
separated, dried over Na2804, filtered, and concentrated to give a residue, which was
purified by column chromatography (30 g SiOg, heptane/TBME in a ratio 7/3) to give the
product as a foam (546 mg, 78%).
LC-MS at 254nm; [M+H] 481.3/4832; Rt 1.37 min; (LCMS method 1).
1H NMR(DMSO—d6): 5.50 (dd, 1H), 5.4—4.5 (brs, 2H), 4.48 (brs, 1H), 4.13 (dd, 1H), 4.01 (d,
1H), 3.93-3.87 (m, 2H), 3.74-3.66 (m, 2H), 3.64-3.55 (m, 3H), 3.5-3.0 (brs, 1H), 3.46 (ddd,
1H), 3.40 (dd, 1H), 3.11-3.03 (m, 1H), 3.00-2.90 (m, 1H), 1.96 (d, 1H), 1.78 (d, 1H), 1.70-
1.48 (m, 3H), 1.24 (d, 3H), 1.14 (d, 3H).
e) 2,6-Bis-((R)methyl-morpholinyl)pyridinyI(tetrahydro-pyranyl)-9H-
pufine
8-Bromo-2,6-bis-((R)-3—methyl-morpholinyl)—9-(tetrahydro-pyranyl)-9H-purine (40 mg,
83 pmol) was dissolved in 2 mL of toluene under argon in a microwave vial, and 2-
(tributylstannyl)—pyridine (36 mg, 83 umol) and Pd(PPh3)4 (4.8 mg, 4.2 pmol) were added.
The microwave vial was capped, and the reaction mixture was stirred for 3 hours at 120 °C.
The vial was cooled to room temperature and opened. The mixture was diluted with EtOAc
(20 mL) and brine. The organic layer was ted, dried over Na2SO4, d and
concentrated under reduced pressure. The residue was purified by column chromatography
PCT/lBZOlZ/055929
(12 g SiOg, heptane/TBME in a gradient from 4/1 to 2/3) to give the t as a solid (35
mg, 88%).
LC-MS at 254nm; [M+H] 480.3; Rt 1.34 min; (LCMS method 1).
1H NMR (DMSO-de): 8.68 (d, 1H), 8.06 (d, 1H), 7.94 (dd, 1H), 7.46 (dd, 1H), 6.53 (dd, 1H),
6.0-4.5 (brs, 2H), 4.58-4.48 (m, 1H), 4.18 (dd, 1H), 3.99-3.86 (m, 3H), 3.78-3.69 (m, 2H),
3.69—3.64 (m, 1H), 3.64-3.56 (m, 1H), 3.5-3.0 (brs, 1H), 3.55-3.39 (m, 3H), 3.28-3.17 (m, 1H),
3.15-3.05 (m, 1H), 2.00-1.92 (m, 1H), 1.85 (dd, 1H), 1.65-1.45 (m, 3H), 1.28 (d, 3H), 1.18 (d,
3H).
f) 2,6-Bis-((R)methyl-morpholinyl)pyridinyI-9H-purine
s-((R)—3-methyI-morpholin-4—yl)pyridin-Z-yI(tetrahydro-pyranyl)-9H-purine (33
mg, 69 umol) was dissolved in 3 mL of THF. 2N s HCI (344 pl, 688 umol) was added,
and the reaction was stirred for 2 hours at room temperature. 100 mg of NaZCO3 and 10 mL
of CHZCIZ were added, and the reaction mixture was stirred for 20 minutes. The organic layer
was separated, dried over Na2804, filtered, and concentrated under reduced pressure. The
residue was ed by column chromatography (12 g SiOg, heptane/EtOAc in a gradient
from 100/0 to 3/2) to give the product as a solid (24 mg, 88%).
LC-MS at 254nm; [M+H] 396.3; Rt 1.03 min; (LCMS method 1).
1H NMR(DMSO-d6): 12.98 (s, 1 H), 8.62 (d, 1 H), 8.12 (d, 1H), 7.89 (ddd, 1H), 7.40 (ddd,
1H), 6.0-4.5 (brs, 2H), 4.57 (dd, 1H), 4.20 (d, 1H), 4.0-3.0 (brs, 1H), 3.97 (dd, 1H), 3.89 (dd,
1H), 3.76 (d, 1H), 3.71-3.66 (m, 2H), 3.57 (dd, 1H), 3.53 (ddd, 1H), 3.41 (ddd, 1H), 3.09 (ddd,
1H), 1.30 (d, 3 H) 1.17 (d, 3 H)
e 2: 2-((S)Methyl-morpholinyI)((R)methyl-morpholinyl)(1H-
pyrazolyl)-9H-purine
Eo.k
HN /
N N NAN
” O0
a) 2-((S)Methyl-morpholinyl)((R)methyl-morpholinyl)-9H-purine
2-Chloro((R)—3-methyl-morpholinyl)—9H-purine (712 mg, 2.81 mmol),
diisopropylethylamine (0.98 mL, 5.61 mmol), and (S)—3-methy|morpholin hydrochloride (579
mg, 4.21 mmol) were stirred in 2-butanol (3 mL) in a closed 5 mL microwave tube under
argon at 50 0C, until all ingredients were ved. The reaction was then stirred at 175 °C
for 48 hours. The organic layer was diluted with 200 mL of CH2C|2 and washed with brine.
Drying over NaZSO4, filtering and concentration under reduced pressure gave a residue,
which was purified by column chromatography (40 g SiOz, CHQCl2/EtOH/aq NH3 in a nt
from 100/0/0.1 to 01) to give the product as a solid (588 mg, 66%).
LC-MS at 254nm; [M+H] 319.2; Rt 0.70 min; (LCMS method 1).
1H NMR(DMSO-d6): 12.42 (s, 1H), 7.75 (s, 1H), 6.0-4.5 (brs, 2H), 4.50 (dd, 1H), 4.09 (d,
1H), 4.0-3.0 (brs, 1H), 3.92 (dd, 1H), 3.87 (d, 1H), 3.71 (d, 1H), 3.67 (d, 1H), 3.64 (dd, 1H),
3.56 (dd, 1H), 3.48 (ddd, 1H), 3.40 (dd, 1H), 3.05 (ddd, 1H), 1.24 (d, 3 H) 1.12 (d, 3 H).
b) 8-Bromo((S)methyl-morpholinyl)((R)methyl-morpholinyl)-9H-purine
2-((S)Methyl-morpholinyl)((R)methyl-morpholiny|)-9H-purine (786 mg, 2.47
mmol) were dissolved in CH2CI2 (25 mL). Bromine (0.16 mL, 3.09 mmol) diluted in 2 mL of
CH20I2 was added slowly within 2 minutes. The reaction mixture was stirred for 6 hours at
room temperature. Aqueous Na28203 (10 mL) was added to the reaction mixture, and ng
was continued for 15 minutes. The organic layer was washed with brine and aqueous
NaHCOa. Drying over , filtering and concentration under reduced pressure gave a
residue, which was purified by column chromatography (40 g SiOz, heptane/EtOAc in a
gradient from 2/3 to 4/1) to give the product as a foam (455 mg, 46%).
LC-MS at 254nm; [M+H] 3991/3972; Rt 0.94 min; (LCMS method 1).
c) 2-((S)Methyl-morpholinyl)((R)-methyl-morpholinyl)(1H-pyrazolyI)-9H-
pufine
8-Bromo—2-((S)-3—methyl-morpholinyl)((R)methyl—morpholinyl)—9H-purine (50 mg,
126 umol) was dissolved in oxyethane (2 mL) and water (0.2 mL), followed by addition
of 1H-pyrazoIeylboronic acid (21.1 mg, 189 pmol), PdCl2(dppf) (9.21 mg, 13 umol) and
NEt3 (53 pl, 378 umol) under argon. The on mixture was heated to 85 °C for 23 hours.
The reaction mixture was then diluted with EtOAc, the organic layer was separated, washed
with brine, dried over M9804, filtered and concentrated under reduced pressure. The residue
was purified by column chromatography (12 g SiOz, EtOAc) to give the product (19 mg, 39%
yield).
LC—MS at 254nm; [M+H] 385.3; Rt 0.81 min; (LCMS method 1).
1H NMR(DMSO—d6): 13.13 (s, 1H), 12.72 (s, 1 H), 7.82 (s, 1 H), 6.73 (s, 1H), 5 (brs,
2H), 4.54 (d, 1H), 4.13 (d, 1H), 4.0-3.0 (brs, 1H), 3.95 (d, 1H), 3.89 (d, 1H), 3.74 (d, 1H),
3.71-3.64 (m, 2H). 3.57 (d, 1H), 3.51 (dd, 1H), 3.41 (dd, 1H), 3.07 (dd, 1H), 1.26 (d, 3 H) 1.15
(d, 3 H)
Example 3: 8-(1 H-lndolyl)((R)methyl-morpholinyl)[1,4]oxazepanyl-9H-
pufine
PCT/IBZOIZ/055929
a) 8-Bromochloro((R)methyl-morpholiny|)-9H-purine
To a solution of 2-chloro((R)methyl-morpholinyl)-9H-purine (950 mg, 3.74 mmol) in
CH2C|2( 19 mL )was added bromine (0.23 mL, 4.49 mmol). The e was stirred at
ambient temperature for 19 hours. Saturated sodium thiosulfate was added. The aqueous
layer was extracted with dichloromethane two times. Organic layers were combined and
dried over Na2804 and solvent was d under reduced pressure. The crude was
purified by flash column chromatography (0—70% EtOAc/cyclohexane gradient) to furnish
product as a white solid (495 mg, 39%). LC—MS at 254 nm; [M+H] 334.1; Rt 0.89 min;
(LCMS method 1).
1H NMR (400 MHz, DMSO-de): 14.09 (br. s., 1H), 5.4-4.9 (m, 2H) 3.96 (d, 1H) 3.75 (d, 1H)
3.65 (dd, 1H) 3.42 - 3.57 (m, 1H), 3.41-3.37 (m, 1H), 1.29 (d, 3H)
b) 2-Chloro(1H-indolyl)((R)methyI-morpho|inyl)—9H-purine
In a sealed tube, to a solution of ochloro((R)methyl-morpholin—4-yl)-9H-purine
(495 mg, 1.49 mmol) in H20 (11 / 1.1 mL) was added cesium fluoride (452 mg, 2.98
mmol), indoleboronic acid (266 mg, 1.64 mmol), and is(tripheny|phosphine)palladium
(172 mg, 0.15 mmol). Then the reaction was conducted under microwave irradiation at
160°C for 30 min. The ts were removed under reduced pressure and the crude was
purified by flash column chromatography (20-100% EtOAc/cyclohexane gradient) to e
2-chloro(1H-indolyl)((R)methyl-morpholinyl)-9H-purine (350 mg, 63.8%) as a
pale yellow solid. LC-MS at 254nm; [M+H] 369.2; Rt 1.00 min; (LCMS method 1).
(400 MHz, DMSO—de): 13.59 (s, 1H), 11.41 (s, 1H), 7.73 (dd, 1H), 7.58 - 7.49 (m, 2H), 7.38 -
7.20 (m, 2H), 5.14 (s, 1H), 4.05-4.01 (m, 1H), 3.79 — 3.88 (m, 1H), 3.69 — 3.79 (m, 1H), 3.57
(s, 1H), 3.60 (s, 1H), 1.41 (d, 3H)
c) 8-(1 H-Indolyl)((R)methyl-morpholinyl)[1,4]oxazepanyl-9H-purine
To the solution of 2-chloro(1H-indol—4-yl)((R)methyl-morpholinyl)—9H-purine (50
mg, 0.14 mmol) in 1-butanol (300 pL) was added 1,4-oxazepane (20.6 mg, 0.20 mmol),
followed by DIPEA (47.4 uL, 0.27 mmol). The mixture was stirred at 120°C for 24 hours.
Upon completion of the reaction, the solution was poured into water. The aqueous layer was
extracted with CH20|2 three times. The combined organic layers were dried over Na2804,
filtered, concentrated under reduced pressure and the crude was purified by flash column
chromatography (30-100% EtOAc/cyclohexane gradient) to provide 2-((28,6R)-2,6-dimethyl—
linyl)morpholin—4—yl-9H-purine (35 mg, 59%) as a beige solid. LC-MS at 254nm;
[M+H] 432.3; Rt 1.00 min; (LCMS method 1).
1H NMR (400 MHz, DMSO-de) 12.47 (br. s., 1H), 11.00 (br. s., 1H), 7.67 (d, 1H), 7.43 - 7.39
(m, 2H), 7.28 (br. s., 1H), 7.16 (t, 1H), 5.45 (d, 1H), 5.08 (d, 1H), 4.10 — 3.95 (m, 1H), 3.91 -
3.85 (m, 4H), 3.82 - 3.75 (m, 4H), 3.69-3.65 (m, 2H), 3.63-3.57 (m, 1H), 3.48-3.40 (m, 1H),
.90 (m, 2H), 1.23 - 1.18 (m, 3H)u
Example 4: 8-[4-(1H-lmidazolyl)-phenyll-Z,6-bis-((R)methyl-morpholinyl)-9H-
pufine
H H a
a) 8-Bromo-2,6-bis-((R)methyl-morpholinyl)—9H-purine
2,6-Bis-((R)—3-methyl-morpholin—4-yl)-9H-purine (637 mg, 2 mmol) was dissolved in 50 mL of
CHQCI2 and stirred under argon. Bromine (124 pl, 2.4 mmol) was dissolved in 2 mL of CHZClz
and added within 2 minutes. The reaction was d for 6 hours at room temperature. 5 mL
of aqueous Na28203 were added, the mixture was stirred for 15 minutes, and the c
solvents were separated, washed with brine and aqueous , dried over ,
filtered, and concentrated. The residue was purified by column chromatography (40 g SiOg,
heptane/EtOAc in a gradient from 2/3 to 4/1) to give a foam (422 mg, 53%).
1H NMR(DMSO—d6): 13.20 (1H, brs), 54-45 (brs, 2H), 4.48 (d, 1H), 4.12 (d, 1H), 3.93 (d,
1H), 3.89 (dd, 1H), 3.73 (d, 1H), 3.68 (d, 1H), 3.64 (d, 1H), 3.56 (dd, 1H), 3.48 (ddd, 1H),
3.41 (ddd, 1H), 3.4-3.1 (brs, 1H), 3.07 (ddd, 1H), 1.26 (d, 3H), 1.15 (d, 3H)
b) 8-[4-(1 H-lmidazoIy|)-phenyl]-2,6-bis-((R)methyl-morpholinyl)-9H-purine
8—Bromo-2,6-bis—((R)-3—methyl-morpholinyl)-9H-purlne (99 mg, 250 umol) was dissolved in
2 mL of acetonitrile and 0.2 mL of water under argon. 4-(1H-imidazol-2—yl)phenyl boronic acid
(58.7 mg, 313 umol), CsF (57 mg, 375 umol), and Pd(PPh3)4 (28.9 mg, 25 umol) were added.
The suspension was stirred at 50 °C for 10 minutes in a closed microwave vial. Then it was
irradiated for 40 minutes in a microwave apparatus at 150 °C. The vial was cooled and
uncapped, and the reaction mixture was diluted with 50 mL of CHZCIZ and 10 mL of
isopropanol. The organic solvents were washed with brine and aqueous NaHCO3, dried over
Na2304, filtered and concentrated under reduced pressure. The residue was purified by
column chromatography (40 g SiOz, CH20l2/EtOH/aqueous NH3 in a nt from 100/0/0.1
to 90/10/0.1) to give the product as a solid (58 mg, 48%).
LC-MS at 254nm; [M+H] 461.3; Rt 0.76 min; (LCMS method 1).
1H NMR (600 MHz, DMSO-de):13.03 (s, 1 H), 12.62 (s, 1H), 8.10 (d, 2H), 8.02 (d, 2 H), 7.31
(s, 1H), 7.07 (s, 1H), 6.0-4.5 (brs, 2H), 4.55 (dd, 1H), 4.20 (d, 1H), 4.0-3.0 (brs, 1H), 3.99
(dd, 1H), 3.92 (dd, 1H), 3.79 (d, 1H). 3.74-3.68 (m, 2H), 3.61 (dd, 1H), 3.55 (ddd, 1H), 3.45
(ddd, 1H), 3.12 (ddd, 1H), 1.32 (d, 3 H), 1.19 (d, 3 H)
Example 5: 8-(6-Fluoro-1 H-indolyl)((S)methyI-morpholinyl)((R)methyl-
morpholinyl)-9H-purine
4-Chloro-6—fluoro-1H-indole (72 mg, 0.42 mmol) was dissolved in 4 mL of dioxane under
argon. Bis(pinacolato)diboron (198 mg, 778 umol), tricyclohexylphospine (19.8 mg, 71 pmol),
bis(dibenzylidenacetone)palladium (20.3 mg, 35 pmol), and potassium acetate (104 mg, 1.06
mmol) were added under argon. The reaction was stirred for 24 hours at 80 °C. The reaction
mixture was cooled to room temperature and diluted with 30 mL of EtOAc. The organic layer
was washed with 20 mL of brine, dried over NaZSO4, filtered, and concentrated under
reduced pressure. The residue was filtered h a column (40 9 SD; EtOAc/ heptane in
a gradient from 0/100 to 12/88) to yield a mixture, which was concentrated under d
pressure, and then ved in 2 mL of acetonitrile and 0.2 mL of water under argon. 8-
Bromo((S)—3-methylmorpholinyl-)((R)—3-methyl-morpholinyl)-9H-purine (100 mg,
153 umol) was added, followed by cesium fluoride (25.8 mg, 170 umol) and
tetrakis(triphenylphospine)pa|ladium (26 mg, 23 umol). The reaction mixture was stirred at
135 °C for 2 hours in a sealed vial. The reaction mixture was cooled to room temperature
and diluted with 40 mL of EtOAc. The organic layer was washed with brine, dried over
Na2304, filtered, and concentrated. The e was purified by column chromatography (10
g SiO2; tertbutylmethylether) to give the title nd as a foam (36 mg, 19% over 2 steps).
LC-MS at 254 nm; [M+H] 452.3; Rt 1.06 min; (LCMS method 1).
1H-NMR (400 MHz; DMSO—de): 12.95 (s, 1 H), 11.33 (s, 1H), 7.57 (d, 1H), 7.45 (s, 1H), 7.25
(s, 1H), 7.23 (d, 1H), 5 (brs, 2H), 4.56 (d, 1H), 4.17 (d, 1H), 4.0-3.0 (brs, 1H), 4.00 (d,
1H), 3.91 (d, 1H), 3.30 (d, 1H), .68 (m, 2H), 3.60 (d, 1H), 3.57 (dd, 1H), 3.44 (dd, 1H),
3.11 (ddd, 1H), 1.35 (d, 3H), 1.18 (d, 3H).
Example 6: {4-[2,6-Bis-((R)methyl-morpholiny|)-9H-purinyI]-1H-indolyl}-
methanol
[ClN
N \ N
/ l A
4-[2,6-Bis—((R)methyl—morpho|inyI)-9H-purinyl]-1H-indole-6—carboxylic acid methyl
ester (example 32, 72 mg, 146 umol) was dissolved in 10 ml THF under argon. 1N LiAlH4 in
THF (0.22 mL, 0.22 mmol) was added at 5 °C, and the reaction was stirred for 2 hours at
room temperature. The reaction was quenched by addition of aqueous saturated Na2804 (1
mL). The mixture was diluted with 30 mL of CH20|2 and 3 mL of isopropanol. The organic
phases were separated, dried over , filtered, and concentrated. The residue was
purified by column chromatography (12 g SiOz, CH2Cl2/EtOH in a gradient from 100/0 to
88/12) to give the product as a solid (58 mg, 84%).
LC-MS at 254nm; [M+H] 464.3; Rt 0.88 min; (LCMS method 1).
1H NMR (600 MHZ, DMSO-de): 12.83 (s, 1 H), 11.22 (s, 1H),7.63 (d, 1 H), 7.44 (s, 1H), 7.40
(dd, 1H), 7.18 (dd, 1H), 5 (brs, 2H), 5.16 (t, 1H), 4.61 (d, 2H), 4.55 (dd, 1H), 4.19 (d,
1H), 4.0-3.0 (brs, 1H), 3.99 (dd, 1H), 3.90 (dd, 1H), 3.79 (d, 1H), 3.74-3.68 (m, 2H), 3.59 (dd,
1H), 3.56 (ddd, 1H), 3.44 (ddd, 1H), 3.10 (ddd, 1H), 1.35 (d, 3 H), 1.17 (d, 3 H)
Examgles 7 to 32
Examples 7 to 9 in Table 2 below can be made using procedures analogous to those
described in Example 1 using the appropriate boronic acid or boronic ester intermediate.
Examples 10 to 11 in Table 2 below can be made using procedures analogous to those
described in Example 2 using the appropriate boronic acid or boronic ester intermediate.
Examples 12 to 26 in Table 2 below can be made using procedures analogous to those
described in e 3 using the riate boronic acid or boronic ester intermediate.
Examples 27 to 32 in Table 2 below can be made using procedures analogous to those
described in Example 4 using the appropriate c acid or boronic ester intermediate.
Structure and Name m
Number
1H NMR (600 MHz,
DMSO-dg): 1300 (s 1
)864(d1H),8.14(d,
1H), 7.91 (ddd, 1H), 7.42
(ddd, 1H), 5 (brs,
2H), 4.59 (dd, 1H), 4.19 Retention Time:
(d, 1H), 40-30 (brs, 1H),
1.06 min
3.99 (dd, 1H), 3.91 (dd,
Mass (ES+):
1H), 3.79 (d, 1H), 3.73-
396.4
3.68 (m, 2H), 3.59 (dd,
2—(—(S)——3--Methyl—morpholin---yl)6—((R)- 1H), 3.56 (ddd, 1H), 3.43
3-m—ethyl-morpholin-y|)-8—pyridin (ddd, 1H), 3.11 (ddd,
yI-9H-purine 1H), 1.31 (d, 3H)1.18
1H NMR (600 MHz,
DMSO-de): 12.99 (s, 1 H),
8.62 (d, 1 H), 8.12 (d,
1H), 7.89 (ddd, 1H), 7.40
(ddd, 1H), 6.0-4.5 (brs,
2H), 4.56 (dd, 1H), 4.19
Retention Time:
(d, 1H), 4.0-3.0 (brs, 1H),
1.04 min
3.96 (dd, 1H), 3.89 (dd,
Mass (ES+):
1H), 3.76 (d, 1H), 3.71-
396.4
3.66 (m, 2H), 3.57 (dd,
1H), 3.53 (ddd, 1H), 3.41
2,6-Bis-((S)—3-methyl-morpholin—4-yl)- (ddd, 1H), 3.09 (ddd,
dinyl-9H-purine 1H), 1.30 (d, 3 H) 1.16
Retention Time:
4.38 min
Mass (ES+):
367.95
1H NMR (400 MHz,
DMSO-de): 13.13 (s, 1H),
12.72 (s, 1 H), 7.84 (dd, Method 1
1 H), 6.75 (dd, 1H), 6.0- Retention Time:
4.5 (brs, 2H), 4.6-4.47 0.81 min
(m, 1H), 4.16 (dd, 1H), Mass (ES+):
40-30 (hrs, 1H), 3.96 385.3
(dd, 1H), 3.90 (dd, 1H),
3.76 (d, 1H), 3.73-3.64
W0 2013/061305 PCT/lBZOlZ/055929
2,6-Bis-((S)methyl-morpholin—4—yl)— (m, 2H), 3.59 (dd, 1H),
8-(1H-pyrazolyI)-9H-purine 3.52 (dd, 1H), 3.43 (dd,
1H), 3.09 (dd, 1H), 1.29
d,3H 1.17 d,3H
1H NMR (600 MHz,
DMSO-d6):13.12 (s, 1H),
12.71 (s, 1 H), 7.82 (d, 1
H), 6.74 (d, 1H), 6.0-4.5
(brs, 2H), 4.52 (d, 1H), Mew
4.16 (d, 1H), 40-30 (hrs, Retention Time:
1H), 3.95 (d, 1H), 3.88 0.81 min
(d, 1H), 3.74 (d, 1H), Mass (ES+):
3.71-3.63 (m, 2H), 3.57 385.3
(d, 1H), 3.51 (dd, 1H),
3.41 (dd, 1H), 3.08 (ddd,
2,6-Bis—((R)—3-methyl-morpholin—4—yl)- 1H), 1.27 (d, 3 H), 1.15
8-(1H-pyrazolyl)-9H-purine d, 3 H
H NMR (600 MHZ.
DMSO-ds): 12.77 (br. s.,
1 H), 11.28 (br. s., 1 H),
7.66 (d, 1 H), 7.46 - 7.43
(m, 2 H), 7.25 (t, 1 H),
7.15 (t, 1 H), 5.6-5.4 (s, 1
Method 1
H), 5.1-4.8 (m, 1H), 4.49
ion Time:
(t, 1H), 4.27 (d, 1H), 3.98
1.17 min
(dd, 1H), 3.85 (dd, 1H),
Mass (ES+):
3.79 (d, 2H), 3.72 (d,
462.3
1H), 3.59 - 3.48 (m, 2H),
3.45 - 3.35 (m, 1H), 3.31
8-(1 H-I ndoiy|)((R)methyl-
morpholinyl)((R)propyl- (br. s., 1H), 3.10 (td, 1H),
1.75- 1.68 (m, 1H), 1.60
morpholin-4—yl)—9H-purine
- 1.53 (m, 1H), 1.37 -
1.20 m, 5H 0.89
, t, 3H
1H NMR (400 MHz,
e): 12.93 (s, 1H),
11.28 (br. s., 1H), 7.67
(d, 1H), 7.56 - 7.44 (m,
2H), 7.28 (br. s., 1H), Mail
7.16 (t, 1H), 5.5—5.0 (m, Retention Time:
1H), 4.56 (br. s., 2H), 0.85 min
4.36 (d, 1H), 4.07 - 3.95 Mass (ES+):
(m, 3H), 3.84 - 3.71 (m, 460.4
2H), 3.62-3.55 (m, 1H),
8—[8—(1H-IndoIyl)—6-((R)methyl- 1.94 (d, 2H), 1.82 - 1.66
morpholin—4-yI)-9H-purinyl]-8—aza- (m, 4H), 1.66 - 1.49 (m,
bic clo 3.2.1 octano! 2H), 1.45 - 1.31 (m, 3H)
1H NMR (400 MHz,
DMSO—de): 12.87 (s, 1H),
11.28 (br. s., 1H), 7.66
(d, 1H), 7.50 - 7.40 (m,
2H), 7.30—7.25 (m, 1H),
7.16 (t, 1H), 5.6-5.0 (m, M
1H), 4.58-4.46 (m, 3H), Retention Time:
4.07 - 3.94 (m, 2H), 3.88 0.86 min
(br. s., 1H), 3.85 - 3.68 Mass (ES+):
(m, 2H), 3.58 (t, 1H), 460.3
3.44-3.40 (m, 1H), 2.26
(d, 2H), 2.14-2.06 (d,
8-[8-(1H-IndoIy|)((R)methyl- 2H), 2.94 — 1.79 (m, 2H),
morpholinyl)-9H—purin-2—yl]aza- 155-157 ( m, 2H )1 1.36
bicyclo[3.2.1]octan—3-ol d, 3H
H NMR (600 MHz,
DMSO-ds): 12.79 (s, 1H),
11.27 (br. s., 1H), 7.66
(d, 1H), 7.48 - 7.42 (m,
2H), 7.25 (br. s., 1H),
7.14 (t, 1H), 5.7-4.7 (m, Method 1
2H), 4.37 (t, 1H), 4.27 (d, Retention Time:
1H), 3.99 (dd, 1H), 3.88 - 1.07 min
3.77 (m, 3H), 3.72 (d, Mass (ES+):
1H), 3.62 - 3.47 (m, 2H), 448.3
3.42 (td, 2H), 3.12 - 3.06
2—((R)Ethyl—morpho|in—4-y|)(1H- (m, 1H), 1,79 - 1,72 (m,
indoIyl)((R)methyl-morpholin- 1H), 1.63 - 1.56 (m, 1H),
9H-purine 1.40 — 1.29 (m, 3H), 0.87
t, 3H
H NMR (600 MHz,
DMSO-de) 12.81 (s, 1H),
11.28 (br. s., 1H), 7.65
(d, 1H), 7.53 — 7.43 (m,
2H), 7.25 (t, 1H), 7.15 (t,
Method 1
1H), 5.6-5.0 (m, 2H),
Retention Time:
3.99 (dd, 1H), 3.82 - 3.76
0.69 min
(m, 1H), 3.75 - 3.65 (m,
Mass (ES+):
3H), 3.58-3.53 (m, 1H),
433.3
3.49-3.46 (m, 1H), 3.40
Indolyl)((R)methyl- (t, 1H), 3.34-3.29 (m,
morpholinyl)(4-methyl-piperazin— 1H), 2.39 - 2.27 (m, 4H),
9H—purine 2.26 - 2.10 (m, 3H), 1.34
d, 3H
H NMR (600 MHz,
DMSO—de): 12.95 (s, 1H),
11.28 (br. s., 1H), 7.63 -
7.60 (m, 1H), 7.46 - 7.40
Method 1
(m, 2H), 7.25 (t, 1H),
Retention Time:
7.14 (t, 1H), 5.65-4.85
0.97 min
(m, 2H), 4.00 — 3.95 (m,
Mass (ES+):
1H), 3.81 - 3.75 (m, 1H),
460.3
3.73 - 3.66 (m, 3H), 3.65
- 3.59 (m, 4H), 3.57 -
3.44 (m, 3H), 3.42—3.38
m,1H,1.83-1.68 m,
morpho|inyi)(6-oxaaza- 2H), 1.55 - 1.43 (m, 2H),_
siro[3.5]non | -9H—ourine 1.34 d, 3H
1H NMR (600 MHz,
g): 12.83 (s, 1H),
11.28 (br. s., 1H), 7.64
(d, 1H), 7.50 - 7.42 (m,
2H), 7.25 (br. s., 1H), Method 1
7.15 (t, 1H), 5.75-4.70 Retention Time:
(m, 2H), 4.55 (t, 2H), 0.72 min
4.47 (t, 2H), 3.99 (dd, 1 Mass (ES+):
H), 3.81 - 3.76 (m, 1 H), 475.3
3.75 - 3. 64 (m, 5 H),
8—(1 H-lndolyl)((R)methyl- 3.62 -3. 51 (m, 1 H),
morpholinyl)(4-oxetan—3-yl— 3.46 - 3.38 (m, 2H), 2.30
nierazin l -9H-urine (t, 4H), 1.34 (d, 3H)
1H NMR (400 MHz,
DMSO-de): 12.89 (s, 1H),
11.28 (br. s., 1H), 7.68-
7.64 (m, 1H), 7.48 - 7.44
(m, 2H), 7.28 (t, 1H), Meflm
7.18 (t, 1H), 5.7—4.2 (m, Retention Time:
2H), 4.01 (dd, 1 H), 3.89 0.88 min
- 3.79 (m, 3H), 3.77 - Mass (ES+):
3.66 (m, 3H), 3.62 - 3.55 446.3
(m, 3H), 3.54 - 3.42 (m,
8—(1 H-IndoI—4-yl)—6-((R)—3-methyl- 2H), 3.32 (s, 1H), 3.02 -
morpholin-4—yl)—2-(tetrahydro-furo[3,4- 2.91 (m, 2H), 1.37 (d,
H NMR (400 MHz,
DMSO—de):12.81 (s, 1H),
11.29 (br. s., 1H), 7.69 —
7.84 (m, 1H), 7.49 - 7.44
(m, 2H), 7.27 (br. s., 1H),
7.18 m1
(t, 1H), 5.6-4.8 (m,
Retention Time:
2H), 3.98 - 3.90 (m, 1H),
0.95 min
3.84 - 3.71 (m, 8H), 3.62
Mass (ES+):
- 3.54 (m, 2H), 3.48 —
460.3
3.39 (m, 3H), 3.33 — 3.30
2-(Hexahydro-furo[3,4-c]pyridin-5—yl)— (m, 1H), 2.49 -2.33 (m,
8-(1 H-indolyl)—6-((R)—3—methyl- 2H), 1.77 (br. s., 1H),
morpholin-4—yl)-9H-purine 1.52 (br. s., 1H), 1.38 (d.
H NMR (600 MHz,
e): 12.75 (s, 1H),
11.27 (br. s., 1H), 7.64
(d, 1H), 7.38 - 7.45 (m,
2H), 7.24 (t, 1H), 7.14 (t, Method 1
1H), 5.2-4.7 (m, 2H), Retention Time:
4.45 (d, 1H), 4.29 (d, 1.12 min
1H), 3.98 -3.92 (m, 2H), Mass (ES+):
3.84 - 3.78 (m, 2H), 3.74 462.3
- 3.69 (m, 1H), 3.60 -
8-(1H-Indoiyl)((R)isopropy|- 3.53 (m, 1H), 3.43 — 3.35
morphoiin-4—yl)((R)—3-methyl- (m, 2H), 3.32 — 3.21 (m,
morpholin—4-y|)-9H-purine 1H ,3.09 td, 1H ,2.48-
WO 61305
2.30 (m, 1H), 1.34 (d,
3H), 1.00 (d, 3H), 0.77
d, 3H
H NMR (600 MHz,
DMSO-de): 12.84 (br. s.,
1H),11.28(br.s.,1H),
7.65 (d, 1H), 7.47 - 7.43
(m, 2H), 7.25 (br. s., 1H),
Method 1
7.15 (t, 1H), 5.7-5.3 (m,
Retention Time:
1H), 4.75 (d, 2H), 4.00
1.24 min
(d, 1H), 3. 82 - 3. 77 (m,
Mass (ES+):
1H), 3.76 — 3.70 (m, 1H),
486.3
3.57 (t, 1H), 3.37 (br. s.,
1H), 2.86 (t, 2H), 2. 64 —
8—( 1 H-l ndoIyl)((R)—3—methyl- 2. 56 (m, 1H), 1.83 (d,
morpholinyl)(4-trifluoromethyl- 2H), 1.43-1.36 (m, 3H),
piperidinyl)—9H-pu rine
1H NMR (600 MHz,
DMSO-ds): 12.83 (br. s.,
1H), 11.28 (br. s., 1H),
7.65 (d, 1H), 7.53 - 7.42
Method 1
(m, 2H), 7.25 (br. s., 1H),
Retention Time:
7.15 (t, 1H), 5.5-5.0 (m,
1.1 min
2H), 4.42 (d, 2H), 4.00
Mass (ES+):
(d, 1H), 3.80 (d, 1H),
448.3
3.73 (d, 1H), 3.60 - 3.52
(m, 3H), 3.3 (m, 1H),
2-((2S,6R)—2,6-Dimethyl—morpholin-4— 2.48-2.43 (m, 2H), 1.35
y|)(1H-indolyl)—6-((R)methyl- (d, 3H), 1.15 (d, 6H)
morpholin
1H NMR (600 MHz,
CHLOROFORM-d): 8.42
(br. s., 1H), 7.55 (d, 1H),
7.49 (d, 1H) 7.38 (br. s., Method 1
1H), 7.31 - 7.26 (m, 2H), ion Time:
4.17 - 4.07 (m, 3H), 4.01 0.92 min
(dd, 3H), 3.88 (d, 2H), Mass (ES+):
3.77-3.64 (m, 3H), 3.43 460.3
(t, 3 H), 2.73 (br. s., 2 H),
2.25 (t, 2H), 1.76 (d, 2H),
1.51 (br. s., 3H)
1H NMR (600 MHz,
DMSO—de): 12.87 (s, 1H),
11.28 (br. s., 1H), 7.65
(d, 1H), 7.45 (d, 2H),
7.25 (br. s., 1H), 7.15 (t,
Method 1
1H), 5.7-4.9 (m, 2H),
Retention Time:
4.80 (t, 1H), 4.53 (d, 1H),
0.82 min
4.38 (d, 1H), 4.00 (d,
Mass (ES+):
1H), 3.91 (d, 1H), 3.80
450.3
(d, 1H), 3.73 (d, 1H),
3.60 - 3.46 (m, 3H), 3.44
{(S)[8-(1H-lndolyl)((R)—3—
— 3.38 (m, 3H), 2.90 (t,
methyl-morpholinyl)-9H-purinyl]- 1H), 2.58 - 2.84 (m, 1H),
1.35 (d, 3H)
H NMR (600 MHz,
DMSO-de): 12.86 (s, 1H),
11.28 (br. s., 1H), 7.65
(d, 1H), 7.55 - 7.43 (m,
2H), 7.27-7.23 (m, 1H),
7.15 (t, 1H), 5.7-5.0 (m, Method 1
2H), 4.81 (t, 1H), 4.52 (d, Retention Time:
1H), 4.42 - 4.32 (m, 1H), 0.83 min
3.99 (d, 1H), 3.91 (d, Mass (ES+):
1H), 3.80 (d, 1H), 3.73 450.3
(d, 1H), 3.56 - 3.38 (m,
6H), 2.93 - 2.86 (m, 1H),
-[8-(1H-Indolyl)((R) 2.64 - 2.58 (m, 1H), 1.33
methyl-morpholin-4—yl)-9H-purin—2-yl]— (d, 3H)
morpholin-Z-yl}-methanol
1H NMR (600 MHz,
DMSO—de):12.72 (s, 1 H),
8.58 (d, 1 H), 7.97 (dd,
1H), 6.51 (d, 1H), 6.36
(s, 2H), 6.0-4.5 (brs, 2H),
Method 1
4.52 (dd, 1H), 4.16 (dd,
Retention Time:
1H), 4.0—3.0 (brs, 1H),
0.73 min
3.96 (dd, 1H), 3.90 (dd,
Mass (ES+):
1H), 3.76 (d, 1H), 3.72-
411.3
3.64 (m, 2H), 3.60 (dd,
1H), 3.52 (ddd, 1H), 3.44
-[2,6-Bis-((S)methyl-morpholin (ddd, 1H), 3.09 (ddd,
y|)-9H-purin-8—yl]—pyridinylamine 1H), 1.29 (d, 3 H) 1.17
1H NMR (600 MHz,
DMSO-de): 12.72 (s, 1 H),
8.58 (d, 1 H), 7.97 (dd,
1H), 6.51 (d, 1H), 6.36
Method 1
(s, 2H), 5 (brs, 2H),
Retention Time:
4.52 (dd, 1H), 4.16 (dd,
0.73 min
1H), 4.0-3.0 (brs, 1H),
Mass (ES+):
3.96 (dd, 1H), 3.90 (dd,
411.3
1H), 3.76 (d, 1H), 3.72-
3.64 (m, 2H), 3.60 (dd,
-[2,6-Bis-((R)—3—methy|—morpholin—4— 1H), 3,52 (ddd, 1H), 3_44
yl)-9H-purinyl]—pyridinyiamine
PCT/IBZOlZ/055929
H NMR 6(00 MHz,
DMSO-d6): , 1
H), 8.80(s, 2H), 7.s,08(
2H), 6.0-4.5 (brs, 2H),
4.49 (dd, 1H), 4.14 (d, Method 1
1H), 0 (brs, 1H), Retention Time:
3.94 (dd, 1H), 3.88 (dd, 0.78 min
1H), 3.74 (d, 1H), 3.71- Mass (ES+):
3.63 (m, 2H), 3.58 (dd, 412.3
1H), 3.50 (ddd, 1H), 3.42
(ddd, 1H), 3.07 (ddd,
-[2,6-BIs—((R)—3—methyl-morpholin~4—
1H) 1.27 (d 3 H) 1.15
yl')- 9H-purinyl]-pyrimidin—2-yl-amine
1H NMR (600 MHz,
DMSO-de): 13.82 (brs,
1H), 13.11 (s, 1 H), 8.17
(d, 2H), 8.05 (d, 2 H),
7.47 (s, 2H), 6.0-4.5
Method 1
(brs, 2H), 4.55 (dd, 1H),
Retention Time:
4.20 (d, 1H), 4.0-3.0 (brs,
0.76 min
1H), 3.99 (dd, 1H), 3.92
Mass (ES+):
(dd, 1H), 3.79 (d, 1H),
461.3
3.74-3.66 (m, 2H), 3.61
8—[4-(1H-lmidazol—2-yi)-phenyl]—2,6— (dd, 1H), 3.55 (ddd, 1H),
bis-((S)—3-methyI-morpholin-4—yl)—9H— 3.45 (ddd, 1H), 3.12
purine (ddd, 1H), 1.33 (d, 3 H),
1H NMR (600 MHz,
DMSO-d6): 12.87 (s, 1
H), 11.04 (s, 1H), 7.39
(d, 1H), 7.29 (dd, 1H),
7.14 (s, 1H), 6.96 (s.
1H), 6.0-4.5 (brs, 2H), Method 1
4.56 (d, 1H), 4.16 (d, ion Time:
1H), 4.0-3.0 (brs, 1H), 1.02 min
3.99 (d, 1H), 3.90 (dd, Mass (ES+):
HN 1H), 3.82 (s, 3H), 3.79 464.3
(d, 1H), 3.75-3.67 (m,
8-(6-Methoxy-1H-indol—4—yi)((S)—3- 2H), 3.60 (dd, 1H), 3.56
methyl—morpholin—4—yl)—6—((R)—3— (dd, 1H), 3.44 (dd, 1H),
methyl-morpholin-4—yi)—9H—purine 3.10 (ddd, 1H), 1.34 (d,
3H 1.17 d,3H.
1H NMR (400 MHz,
DMSO-ds) :13.11 (s, 1
H), 11.70 (s, 1H), 8.34
(d, 1 H), 8.09 (s, 1H), Method 1
7.71 (dd, 1H), 7.32 (dd,
Retention Time:
1H), 6.0-4.5 (brs, 2H),
1.05 min
4.56 (dd, 1H), 4.19 (d,
Mass (ES+):
1H), 4.0-3.0 (brs, 1H),
492.3
3.99 (dd, 1H), 3.90 (dd,
1H), 3.89 (s, 3H), 3.79
4-[2,6-Bis-((R)—3-methyl-morpholin (d, 1H), 375-368 (m,
yI)—9H-purin—8-yI]—1H-indole—6-
- ylic acid methyl ester (ddd, 1H), 3.44 (ddd,
1H), 3.11 (ddd, 1H), 1.36
d,3H,1.18 d,3H
Claims (17)
- Claims 1. A compound of formula (I), or a pharmaceutically acceptable salt thereof, R1 is ed from the group consisting of (R18)m _N N— N— , a (R )q p \ n R20 (R22)r a and ; wherein R18 on each occurrence independently represents fluoro or methyl; m represents 0, 1, 2 or 3; R19 and R20 ndently represent hydrogen or ; R21 represents fluoro; R22 on each occurrence independently represents fluoro, methoxy, hydroxymethyl or methoxycarbonyl; q represents 0, 1 or 2 and r represents 0, 1, 2 or 3 provided that q + r is not 0; R2, R3, R4, R5, R6, R7, R8 and R9 independently represent hydrogen, C1_3alky|orfluoro-C1. 3alkyl; or R3 and R6 together form a methylene bridge; or R3 and R8 together form an ethylene bridge; or R5 and R6 together form an ethylene bridge; n and p independently represent 0, 1 or 2; R“, R“, R12, R13, R14, R15, R16 and R17 on each occurrence independently represent hydrogen, C1_3alkyl, fluoro-C1_3alkyl or hydroxy—C1_3alkyl; or R11 and R16 together form an ethylene bridge; or R13 and R14 together form an ethylene ; or R14 and R15, together with the carbon atom to which they are ed, are linked to form a tetrahydropyranyl ring; Y represents 0, CHR23, CR24R25 or NR26, wherein R23 represents hydroxyl or fluoro-C1.3alkyl; or R23 and R13, together with the carbon atoms to which they are attached, are linked to form a fused tetrahydrofuranyl ring; R24 and R25 independently ent en or halogen; or R24 and R25, together with the carbon atom to which they are attached, are linked to form a tetrahydropyranyl ring; R26 represents kyl or oxetanyl; a compound, or a pharmaceutically acceptable salt f, selected from the following list of compounds: 8—(1H-lndolyl)(3-methyl-morpholinyl)[1,4]oxazepanyl-9H-purine; 8—(1H—lndol—4-yl)(3-methyl-morpholinyl)—2—(3—propyl-morpholin—4-yl)-9H-purine; 8—[8-(1 H-lndoI-4—yl)(3-methyl-morpholinyl)-9H-purinyl]aza-bicyclo[3.2.1]octan—3-ol; 8—[8-(1H-lndolyl)(3-methyl-morpholinyl)-9H-purinyl]-8—aza—bicyclo[3.2.1]octanol; 2—(3-Ethyl-morpholin—4—yl)—8—(1H-indolyl)-6—(3-methyl-morpholin—4—yl)—9H-purine; 8-(1H-lndol-4—yl)(3-methyl-morphoIinyl)—2-(4-methyl-piperazinyl)-9H-pu rine; 8-(1H-Indolyl)-6—(3-methyl-morpholinyl)(6-oxaaza-spiro[3.5]nonyl)-9H-purine; 8-(1H-lndolyl)(3-methyl-morpholinyl)(4-oxetanyl-piperaziny|)-9H-purine; 8—(1H-lndolyl)(3—methyl-morpholinyI)-2—(tetrahyd ro-furo[3,4-c]pyrrolyl)—9H-purine; ahydro—furo[3,4-c]pyridin-5—yl)—8—(1H-indo|yl)—6-(3-methyl-morpholinyl)-9H-purine; 8—(1H-lndolyl)(3-isopropyl-morpholin—4—yl)—6-(3-methyl-morpholinyl)-9H-purine; 8-(1H-|ndolyl)(3-methyl-morpholin—4—yl)(4-trifluoromethyl-piperidiny|)-9H-pu rine; 2-(2,6-Dimethyl—morpholinyl)-8—(1H-indolyl)(3-methyl-morpholinyl)-9H-purine; 8-(1H-lndolyl)(3-methyl-morpholin—4-y[)(7-oxaaza-spiro[3.5]nonyl)-9H-purine; {4-[8—(1 H-lndolyl)—6-(3-methyI-morpholin-4—yl)—9H—puriny|]-morpholinyl}—methanol; {4-[8-(1H-lndol-4—yl)(3-methyl-morpholin-4—yl)-9H-purinyl]-morpholinyl}-methanol.
- 2. A compound according to Claim 1, or a pharmaceutically acceptable salt thereof, wherein R1 represents mm)". / \
- 3. A compound according to Claim 1, or a pharmaceutically acceptable salt thereof, wherein R1 represents HN \
- 4. A compound according to Claim 1, or a pharmaceutically acceptable salt f, wherein R1 represents 02“), (R22),
- 5. A compound according to any one of Claims 1 to 4, or a pharmaceutically acceptable salt thereof, wherein R2, R3, R4, R5, R6, R7, R8 and R9 independently represent hydrogen or methyl; or R3 and R6 together form a methylene bridge; or R3 and R8 together form an ethylene bridge; or R5 and R6 together form an ne bridge.
- 6. A compound according to any one of Claims 1 to 5, or a pharmaceutically acceptable salt f, wherein Y represents 0.
- 7. A compound ing to any one of Claims 1 to 5, or a pharmaceutically acceptable salt thereof, wherein Y represents CHR23 or CR24R25.
- 8. A nd, or a pharmaceutically acceptable salt thereof, according to Claim 1 which is selected from: 2,6-Bis-((R)—3-methyl-morpholinyl)—8—pyridin-2—yl-9H-purine; Methyl-morpholinyl)((R)methyl-morpholinyl)(1 H-pyrazolyl)-9H- purine; 8—(1H-lndolyl)((R)—3-methyl-morpholin-4—yl)—2-[1,4]oxazepan-4—yl-9H-purine; 1H-lmidazol—2-yl)—phenyl]-2,6-bis-((R)—3-methyl-morpholinyl)—9H-purine; Iuoro—1 H-indolyl)((S)methyl-morphoiinyl)((R)—3-methyl-morpholin—4-y|)- 9H-purine; {4-[2,6-Bis-((R)—3-methyl-morpholinyl)-9H-purin-8—yl]-1H-indol—6-y|}—methanol; 2-((S)Methy|-morpholinyl)((R)—3-methyl-morpholin-4—yl)—8—pyridinyI-9H-pu rine; 2,6-Bis-((S)methyI-morpholinyl)pyridin—Z-yl—QH-purine; 2,6-Di-morpholinylpyridinyi-9 H-purine; 2,6-Bis-((S)—3-methyl—morpho|in-4—y|)(1H-pyrazol-3—yI)-9H-purine; 2.6-Bis-((R)—3-methyl-morpholinyl)(1H-pyrazoIyI)-9H-purine; 8—(1H-lndoI—4-yl)((R)~3-methyl-morpholinyl)((R)propy|—morpholiny|)-9H-purine; 8-[8-(1 H—lndol-4—yI)((R)—3—methyi—morpholinyI)-9H-purin-2—yl]—8—aza-bicyclo [3 .2. 1 - 3-ol; 8—[8-(1H-indolyl)((R)—3-methyl-morpholin—4-yl)—9H-purin-2—yl]—8-aza-bicyclo[3.2.1]octan- 3-ol; 2-((R)-3—Ethyl-morpholinyi)(1H-indo|yl)((R)methyi-morpholin-4—yl)—9H—purine; 8—(1H-lndoIyl)((R)methy|—morpho|in—4—yl)—2—(4—methyl—piperaziny|)-9H-pu rine; 8-(1H-lndo|yi)((R)methyl-m0rpholin—4-yl)(6-oxaaza—spiro[3.5]nonyl)—9H- purine; 8-(1H—|ndoI-4—yi)—6—((R)methyl—morpholinyl)—2-(4-oxetan-3—yl-piperazin—1-y|)-9H—purine; 8-(1H-lndol-4—yl)—6-((R)methyl-morpholinyl)—2-(tetra hyd ro-fu ro[3 ,4-c]pyrro|—5-y|)—9H- purine; 2-(Hexahydro-fu ro[3,4-c] pyridin-5—yl )(1 H-indol—4—yl)((R)methyI-morpholinyl)-9H— purine; 8—(1H-Indolyl)—2—((R)—3—isopropyl-morphoiin—4—yi)—6—((R)—3—methyl-morpholin—4—yl)—9H- purine; 8-(1H-IndoIyl)((R)methy|~morpholinyl)(4-trifluoromethyl-piperidinyl)-9H- 2-((28,6R)-2,6-Dimethyl-morpholin—4~yl)—8—(1H-indoIyl)((R)—3—methyl-morpho|inyl)-9H- purine; 8-(1H-lndolyl)—6-((R)methyl-morpholinyl)(7-oxaaza-spiro[3.5]non—1-y|)-9H- purine; {(S)[8-(1 H-Indolyl)—6—((R)methyl-morpholin-4—yl)—9H-purinyll-morpholinyl}- methanol; {(R)—4—[8—(1H-Indolyl)((R)—3-methyl-morpholin-.4-y|)-9H-purin—2—y|]-morpholinyl}- methanol; 5-[2,6-Bis-((S)methyl-morpholinyl)—9H-purinyI]-pyridinylamine; 5-[2,6-Bis-((R)—3-methyl-morpholinyi)-9H-purinyl]-pyridinylamine; 5-[2,6-Bis-((R)—3-methyl-morpholin-4—yl)— 9H-purinyl]-pyrimidinyl-amine; 8-[4-(1H-lmidazolyl)-phenyl]-2,6-bis-((S)methyl-morpholinyl)-9H—purine; 8-(6-Methoxy—1 H-indol-4—yl)((S)methyl-morpho|in-4—yl)((R)—3-methyl-morpholin-4—yl)- ine; 5 4-[2,6-Bis-((R)—3-methyl-morpho|in-4—yl)—9H-purinyl]-1H-indolecarboxylic acid methyl ester; and pharmaceutically acceptable salts thereof.
- 9. A compound according to claim 1 which is 2,6-Bis-((R)methyl—morpholinyl)pyridin- 10 2-yl-9H-purine having the following formula [0ML WN \ . i ; or a pharmaceutically acceptable salt f.
- 10. A compound according to claim 1 which is luoro-1H-indolyl)((S)—3-methyl- morpho|in-4—yl)((R)—3-methyl-morpho|in—4—yl)—9H-purine having the following formula ; or a pharmaceutically acceptable salt thereof.
- 11. A compound according to claim 1 which is 2-((S)—3-Methyl-morpholin-4—yl)—6-((R) methyl-morpholin—4-yl)pyridinyl-9H-purine having the following formula Q—<n/ \ /N \N l NAN/H “9‘“ ‘\/ ; or a pharmaceutically acceptable salt thereof.
- 12. A compound according to claim 1 which is 2,6—Bis-((S)—3-methyl-morpholin-4—yl)(1 H- pyrazol-3—yl)—9H-purine having the following formula ; or a pharmaceutically acceptable salt thereof.
- 13. A compound according to any one of Claims 1 to 12, or a pharmaceutically acceptable salt thereof, for use as a ment.
- 14. A compound according to any one of Claims 1 to 12, or a pharmaceutically acceptable 10 salt thereof, for use in the treatment or prevention of cancer, a neurodegenerative disorder or an ophthalmological disease.
- 15. A pharmaceutical composition comprising a compound according to any one of Claims 1 to 12, or a pharmaceutically acceptable salt thereof, and a pharmaceutically acceptable 15 excipient, diluent or carrier.
- 16. The use of a compound according to any one of Claims 1 to 12, or a pharmaceutically acceptable salt thereof, in the manufacture of a medicament for the ent or prevention of cancer, a neurodegenerative er or an ophthalmological disease.
- 17. A combination product comprising a nd according to any one of Claims 1 to 12, or a ceutically acceptable salt f, and another therapeutic agent.
Applications Claiming Priority (3)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
US201161552746P | 2011-10-28 | 2011-10-28 | |
US61/552,746 | 2011-10-28 | ||
PCT/IB2012/055929 WO2013061305A1 (en) | 2011-10-28 | 2012-10-26 | Novel purine derivatives and their use in the treatment of disease |
Publications (2)
Publication Number | Publication Date |
---|---|
NZ624366A NZ624366A (en) | 2015-12-24 |
NZ624366B2 true NZ624366B2 (en) | 2016-03-30 |
Family
ID=
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