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IL315864A - Processes and intermediates for the synthesis of edagracib - Google Patents

Processes and intermediates for the synthesis of edagracib

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Publication number
IL315864A
IL315864A IL315864A IL31586424A IL315864A IL 315864 A IL315864 A IL 315864A IL 315864 A IL315864 A IL 315864A IL 31586424 A IL31586424 A IL 31586424A IL 315864 A IL315864 A IL 315864A
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IL
Israel
Prior art keywords
base
reacting
produce
polar aprotic
aprotic solvent
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IL315864A
Other languages
Hebrew (he)
Inventor
Thomas Scattolin
Yonghong Gan
Cheng Chen
Chengsheng Chen
Original Assignee
Mirati Therapeutics Inc
Thomas Scattolin
Yonghong Gan
Cheng Chen
Chengsheng Chen
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Application filed by Mirati Therapeutics Inc, Thomas Scattolin, Yonghong Gan, Cheng Chen, Chengsheng Chen filed Critical Mirati Therapeutics Inc
Publication of IL315864A publication Critical patent/IL315864A/en

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    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07DHETEROCYCLIC COMPOUNDS
    • C07D471/00Heterocyclic compounds containing nitrogen atoms as the only ring hetero atoms in the condensed system, at least one ring being a six-membered ring with one nitrogen atom, not provided for by groups C07D451/00 - C07D463/00
    • C07D471/02Heterocyclic compounds containing nitrogen atoms as the only ring hetero atoms in the condensed system, at least one ring being a six-membered ring with one nitrogen atom, not provided for by groups C07D451/00 - C07D463/00 in which the condensed system contains two hetero rings
    • C07D471/04Ortho-condensed systems
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K31/00Medicinal preparations containing organic active ingredients
    • A61K31/33Heterocyclic compounds
    • A61K31/395Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins
    • A61K31/495Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins having six-membered rings with two or more nitrogen atoms as the only ring heteroatoms, e.g. piperazine or tetrazines
    • A61K31/505Pyrimidines; Hydrogenated pyrimidines, e.g. trimethoprim
    • A61K31/519Pyrimidines; Hydrogenated pyrimidines, e.g. trimethoprim ortho- or peri-condensed with heterocyclic rings

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  • Chemical & Material Sciences (AREA)
  • Organic Chemistry (AREA)
  • Organic Low-Molecular-Weight Compounds And Preparation Thereof (AREA)
  • Health & Medical Sciences (AREA)
  • Medicinal Chemistry (AREA)
  • Pharmacology & Pharmacy (AREA)
  • Epidemiology (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Animal Behavior & Ethology (AREA)
  • General Health & Medical Sciences (AREA)
  • Public Health (AREA)
  • Veterinary Medicine (AREA)

Description

PROCESSES AND INTERMEDIATES FOR SYNTHESIS OF ADAGRASIB FIELD OF THE INVENTION id="p-1" id="p-1"
[001] The present invention relates to new and improved synthetic routes for synthesis of adagrasib.
BACKGROUND OF THE INVENTION id="p-2" id="p-2"
[002] Kirsten Rat Sarcoma 2 Viral Oncogene Homolog ("KRas") is a small GTPase and a member of the Ras family of oncogenes. KRas serves as a molecular switch cycling between inactive (GDP-bound) and active (GTP-bound) states to transduce upstream cellular signals received from multiple tyrosine kinases to downstream effectors regulating a wide variety of processes, including cellular proliferation (e.g., see Alamgeer et al., (2013) Current Opin Pharmcol. 13:394-401). id="p-3" id="p-3"
[003] The role of activated KRas in malignancy was observed over thirty years ago (e.g., see Der et al., (1982) Proc. Natl Acad. Sci. USA 79(11):3637-3640). Aberrant expression of KRas accounts for up to 20% of all cancers and oncogenic KRas mutations that stabilize GTP binding and lead to constitutive activation of KRas and downstream signaling have been reported in 25 -30% of lung adenocarcinomas. (e.g., see Samatar and Poulikakos (2014) Nat Rev Drug Disc 13(12): 928-942 doi: 10.1038/nrd428). Single nucleotide substitutions that result in missense mutations at codons 12 and 13 of the KRas primary amino acid sequence comprise approximately 40% of these KRas driver mutations in lung adenocarcinoma, with a G12C transversion being the most common activating mutation (e.g., see Dogan et al., (2012) Clin Cancer Res. 18(22):6169-6177, published online 2012 Sep 26. doi: 10.1158/1078-0432.CCR-11-3265). id="p-4" id="p-4"
[004] The well-known role of KRas in malignancy and the discovery of these frequent mutations in KRas in various tumor types made KRas a highly attractable target of the pharmaceutical industry for cancer therapy. Notwithstanding thirty years of large scale discovery efforts to develop inhibitors of KRas for treating cancer, no KRas inhibitor has demonstrated sufficient safety and/or efficacy to obtain regulatory approval (e.g., see McCormick (2015) Clin Cancer Res. 21 (8):1797-1801). id="p-5" id="p-5"
[005] KRas G12C inhibitor compound 2-[(2S)-4-[7-(8-chloro-1-naphthyl)-2-[[(2S)-1-methylpyrrolidin-2-yl]methoxy]-6,8-dihydro-5H-pyrido[3,4-d]pyrimidin-4-yl]-1-(2-fluoroprop-2-enoyl)piperazin-2-yl]acetonitrile (also known as MRTX849, and also known as adagrasib) has the following structure: . id="p-6" id="p-6"
[006] Adagrasib is described, for example, in Example 478 of PCT Application WO 2019/099524. id="p-7" id="p-7"
[007] While WO 2019/099524 describes methods of making adagrasib, there is a need in the art for new and improved synthetic routes of making adagrasib.
SUMMARY OF THE INVENTION id="p-8" id="p-8"
[008] The present invention, in one embodiment, provides new and improved methods of making adagrasib. id="p-9" id="p-9"
[009] In one embodiment, the invention provides a method of synthesizing adagrasib, comprising the step of: a) reacting a compound of the following structure: with a compound of the following structure: in the presence of a base and a polar solvent to produce a final compound of step (a) with the following structure: . id="p-10" id="p-10"
[0010] In one embodiment, step (a) is carried out at a temperature from about 20 °C to about 1°C. id="p-11" id="p-11"
[0011] In one embodiment, the method further comprises step (b): b) reacting the final compound of step (a) with a derivative of phosgene in the presence of an acid and a polar aprotic solvent to produce a final compound of step (b) with the following structure: . id="p-12" id="p-12"
[0012] In one embodiment, step (b) is carried out at a temperature from about 0 °C to about 1°C. id="p-13" id="p-13"
[0013] In one embodiment, the method further comprises step (c): c) reacting the final compound of step (b) with in the presence of a base and a polar aprotic solvent to produce a final compound of step (c) with the following structure: . id="p-14" id="p-14"
[0014] In one embodiment, step (c) is carried out at a temperature from about 0 °C to about 1°C. id="p-15" id="p-15"
[0015] In one embodiment, the method further comprises step (d): d) reacting the final product of step (c) with an activating agent in the presence of an additive, a polar aprotic solvent and a base, to produce a final compound of step (d) with the following structure: , wherein LG is a leaving group. id="p-16" id="p-16"
[0016] In one embodiment, step (d) is carried out at a temperature from about -20 °C to about °C. id="p-17" id="p-17"
[0017] In one embodiment, the method further comprises step (e): e) reacting the final compound of step (d) with a base in the presence of (S)-2-(piperazin-2-yl)acetonitrile or its inorganic or organic salt, and one or more of a polar aprotic solvent to produce a final compound of step (e) with the following structure: . id="p-18" id="p-18"
[0018] In one embodiment, the method further comprises step (f): f) reacting the final compound of step (e) with 2-fluoroacrylic acid (or corresponding alkali or metal salts) and a coupling agent in the presence of a solvent and, optionally, a base to produce adagrasib. id="p-19" id="p-19"
[0019] In one embodiment, step (f) is carried out at a temperature from about -10 °C to about °C. id="p-20" id="p-20"
[0020] In one embodiment, the invention provides a method of synthesizing adagrasib, comprising -reacting with 2-fluoroacrylic acid (or corresponding alkali or metal salts) and a coupling agent in the presence of a solvent and, optionally, a base to produce adagrasib. id="p-21" id="p-21"
[0021] In one embodiment, the invention provides a method of synthesizing adagrasib, comprising the steps of: - reacting , wherein LG is a leaving group, with a base in the presence of (S)-2-(piperazin-2-yl)acetonitrile or its inorganic or organic salt, and one or more of a polar aprotic solvent to produce: ; and - reacting with 2-fluoroacrylic acid (or corresponding alkali or metal salts) and a coupling agent in the presence of a solvent and, optionally, a base to produce adagrasib. id="p-22" id="p-22"
[0022] In one embodiment, the invention provides a method of synthesizing adagrasib, comprising the steps of: -reacting with an activating agent in the presence of an additive, a polar aprotic solvent and a base, to produce: , wherein LG is a leaving group; - reacting , with a base in the presence of (S)-2-(piperazin-2-yl)acetonitrile or its inorganic or organic salt, and one or more of a polar aprotic solvent to produce: ; and - reacting with 2-fluoroacrylic acid (or corresponding alkali or metal salts) and a coupling agent in the presence of a solvent and, optionally, a base to produce adagrasib. id="p-23" id="p-23"
[0023] In one embodiment, the invention provides a method of synthesizing adagrasib, comprising the steps of: -reacting with in the presence of a base and a polar aprotic solvent to produce: ; -reacting with an activating agent in the presence of an additive, a polar aprotic solvent and a base, to produce: , wherein LG is a leaving group; - reacting , with a base in the presence of (S)-2-(piperazin-2-yl)acetonitrile or its inorganic or organic salt, and one or more of a polar aprotic solvent to produce: ; and - reacting with 2-fluoroacrylic acid (or corresponding alkali or metal salts) and a coupling agent in the presence of a solvent and, optionally, a base to produce adagrasib. id="p-24" id="p-24"
[0024] In one embodiment, the invention provides a method of synthesizing adagrasib, comprising the steps of: -reacting with a derivative of phosgene in the presence of an acid and a polar solvent to produce: ; -reacting with in the presence of a base and a polar aprotic solvent to produce: ; -reacting with an activating agent in the presence of an additive, a polar aprotic solvent and a base, to produce: , wherein LG is a leaving group; - reacting , with a base in the presence of (S)-2-(piperazin-2-yl)acetonitrile or its inorganic or organic salt, and one or more of a polar aprotic solvent to produce: ; and - reacting with 2-fluoroacrylic acid (or corresponding alkali or metal salts) and a coupling agent in the presence of a solvent and, optionally, a base to produce adagrasib. id="p-25" id="p-25"
[0025] In one embodiment, the invention provides a method of synthesizing adagrasib, comprising the steps of: -reacting with in the presence of a base and a polar solvent to produce: ; -reacting with a derivative of phosgene in the presence of an acid and a polar solvent to produce: ; -reacting with in the presence of a base and a polar aprotic solvent to produce: ; -reacting with an activating agent in the presence of an additive, a polar aprotic solvent and a base, to produce: , wherein LG is a leaving group; - reacting with a base in the presence of (S)-2-(piperazin-2-yl)acetonitrile or its inorganic or organic salt, and one or more of a polar aprotic solvent to produce: ; and - reacting with 2-fluoroacrylic acid (or corresponding alkali or metal salts) and a coupling agent in the presence of a solvent and, optionally, a base to produce adagrasib. id="p-26" id="p-26"
[0026] In one embodiment, the invention provides a method of synthesizing adagrasib, comprising the steps of: -reacting with in the presence of MeONa and MeOH to produce: ; -reacting with triphosgene in the presence of hydrogen chloride and 2-MeTHF to produce: ; -reacting with in the presence of sodium tert-amylate and 2-MeTHF to produce: ; -reacting with bis(trifluoromethanesulfonyl)aniline in the presence of potassium phosphate tribasic K3PO4 and potassium phosphate dibasic K2HPO4 in MeCN, to produce: ; - reacting with potassium phosphate tribasic in the presence of (S)-2-(piperazin-2-yl)acetonitrile dihydrochloride, 2-MeTHF and MeCN to produce: ; and - reacting with the sodium salt of 2-fluoroacrylic acid in the presence of MeCN and propylphosphonic anhydride to produce adagrasib. id="p-27" id="p-27"
[0027] In another embodiment, the invention provides an alternative route of synthesizing adagrasib. Thus, in one embodiment, the invention provides a method of synthesizing adagrasib, comprising the step of: a’) reacting with in the presence of a base and a polar solvent to produce a final compound of step (a’) with the following structure: . id="p-28" id="p-28"
[0028] In one embodiment, step (a’) is carried out at a temperature from about 0 °C to about 1°C. id="p-29" id="p-29"
[0029] In one embodiment, the invention provides a method of synthesizing adagrasib, further comprising step (b’): b’) reacting the final compound of step (a’) with an alkylating or arylating agent with a base in the presence of a polar solvent to produce a final compound of step (b’) with the following structure: , wherein R is methyl, ethyl, isopropyl, or benzyl. id="p-30" id="p-30"
[0030] In one embodiment, step (b’) is carried out at a temperature from about 20 °C to about 120 °C. id="p-31" id="p-31"
[0031] In one embodiment, the invention provides a method of synthesizing adagrasib, further comprising step (c’): c’) reacting the final compound of step (b’) with an oxidizing agent in the presence of a polar aprotic solvent, and, optionally, a catalyst and a base, to produce a final compound of step (c’) with the following structure: , wherein R is methyl, ethyl, isopropyl, or benzyl. id="p-32" id="p-32"
[0032] In one embodiment, step (c’) is carried out at a temperature from about 0 °C to about 1°C. id="p-33" id="p-33"
[0033] In one embodiment, the invention provides a method of synthesizing adagrasib, further comprising step (d’): d’) reacting the final product of step (c’) with (S)-(1-methylpyrrolidin-2-yl)methanol in the presence of a base and a polar aprotic solvent to produce a final compound of step (d’) with the following structure: . id="p-34" id="p-34"
[0034] In one embodiment, step (d’) is carried out at a temperature from about -20 °C to about °C. id="p-35" id="p-35"
[0035] In one embodiment, the invention provides a method of synthesizing adagrasib, further comprising step (e’): e’) reacting the final product of step (d’) with an activating agent in the presence of a base, an additive and a polar aprotic solvent to produce a final compound of step (e’) with the following structure: , wherein LG is a leaving group. id="p-36" id="p-36"
[0036] In one embodiment, step (e’) is carried out at a temperature from about -20 °C to about °C. id="p-37" id="p-37"
[0037] In one embodiment, the invention provides a method of synthesizing adagrasib, further comprising step (f’): f’) reacting the final product of step (e’) with a base, (S)-2-(piperazin-2-yl)acetonitrile or its inorganic or organic salt, and a polar aprotic solvent to produce a final compound of step (f’) with the following structure: . id="p-38" id="p-38"
[0038] In one embodiment, step (f’) is carried out at a temperature from about 20 °C to about 120 °C. id="p-39" id="p-39"
[0039] In one embodiment, the invention provides a method of synthesizing adagrasib, further comprising step (g’): g’) reacting the final compound of step (f’) with 2-fluoroacrylic acid (or corresponding alkali or metal salts) and a coupling agent in the presence of a solvent and, optionally, a base to produce adagrasib. id="p-40" id="p-40"
[0040] In one embodiment, step (g’) is carried out at a temperature from about -10 °C to about °C. id="p-41" id="p-41"
[0041] In one embodiment, the invention provides a method of synthesizing adagrasib comprising reacting with 2-fluoroacrylic acid (or corresponding alkali or metal salts) and a coupling agent in the presence of a solvent and, optionally, a base to produce adagrasib. id="p-42" id="p-42"
[0042] In one embodiment, the invention provides a method of synthesizing adagrasib comprising the steps of: -reacting , wherein LG is a leaving group, with a base, (S)-2-(piperazin-2-yl)acetonitrile or its inorganic or organic salt, and a polar aprotic solvent to produce: ; -reacting with 2-fluoroacrylic acid (or corresponding alkali or metal salts) and a coupling agent in the presence of a solvent and, optionally, a base to produce adagrasib. id="p-43" id="p-43"
[0043] In one embodiment, the invention provides a method of synthesizing adagrasib comprising the steps of: -reacting with an activating agent in the presence of a base, an additive and a polar aprotic solvent to produce: , wherein LG is a leaving group; -reacting with a base, (S)-2-(piperazin-2-yl)acetonitrile or its inorganic or organic salt, and a polar aprotic solvent to produce: ; -reacting with 2-fluoroacrylic acid (or corresponding alkali or metal salts) and a coupling agent in the presence of a solvent and, optionally, a base to produce adagrasib. id="p-44" id="p-44"
[0044] In one embodiment, the invention provides a method of synthesizing adagrasib comprising the steps of: -reacting wherein R is methyl, ethyl, isopropyl, or benzyl, with (S)-(1-methylpyrrolidin-2-yl)methanol in the presence of a base and a polar aprotic solvent to produce: ; -reacting with an activating agent in the presence of a base, an additive and a polar aprotic solvent to produce: , wherein LG is a leaving group; -reacting with a base, (S)-2-(piperazin-2-yl)acetonitrile or its inorganic or organic salt, and a polar aprotic solvent to produce: ; -reacting with 2-fluoroacrylic acid (or corresponding alkali or metal salts) and a coupling agent in the presence of a solvent and, optionally, a base to produce adagrasib. id="p-45" id="p-45"
[0045] In one embodiment, the invention provides a method of synthesizing adagrasib comprising the steps of: -reacting , wherein R is methyl, ethyl, isopropyl, or benzyl, with an oxidizing agent in the presence of a polar aprotic solvent, and, optionally, a catalyst and a base, to produce: ; -reacting , with (S)-(1-methylpyrrolidin-2-yl)methanol in the presence of a base and a polar aprotic solvent to produce: ; -reacting with an activating agent in the presence of a base, an additive and a polar aprotic solvent to produce: , wherein LG is a leaving group; -reacting with a base, (S)-2-(piperazin-2-yl)acetonitrile or its inorganic or organic salt, and a polar aprotic solvent to produce: ; -reacting with 2-fluoroacrylic acid (or corresponding alkali or metal salts) and a coupling agent in the presence of a solvent and, optionally, a base to produce adagrasib. id="p-46" id="p-46"
[0046] In one embodiment, the invention provides a method of synthesizing adagrasib comprising the steps of: -reacting with an alkylating or arylating agent and a base in the presence of a polar solvent to produce: wherein R is methyl, ethyl, isopropyl, or benzyl; -reacting , with an oxidizing agent in the presence of a polar aprotic solvent, and, optionally, a catalyst and a base, to produce: wherein R is methyl, ethyl, isopropyl, or benzyl; -reacting , with (S)-(1-methylpyrrolidin-2-yl)methanol in the presence of a base and a polar aprotic solvent to produce: ; -reacting with an activating agent in the presence of a base, an additive and a polar aprotic solvent to produce: , wherein LG is a leaving group; -reacting with a base, (S)-2-(piperazin-2-yl)acetonitrile or its inorganic or organic salt, and a polar aprotic solvent to produce: ; -reacting with 2-fluoroacrylic acid (or corresponding alkali or metal salts) and a coupling agent in the presence of a solvent and, optionally, a base to produce adagrasib. id="p-47" id="p-47"
[0047] In one embodiment, the invention provides a method of synthesizing adagrasib comprising the steps of: reacting with in the presence of a base and a polar solvent to produce a final compound of step (a’) with the following structure: ; -reacting with an alkylating or arylating agent and a base in the presence of a polar solvent to produce: , wherein R is methyl, ethyl, isopropyl, or benzyl; -reacting , with an oxidizing agent in the presence of a polar aprotic solvent, and, optionally, a catalyst and a base, to produce: , wherein R is methyl, ethyl, isopropyl, or benzyl; -reacting , with (S)-(1-methylpyrrolidin-2-yl)methanol in the presence of a base and a polar aprotic solvent to produce: ; -reacting with an activating agent in the presence of a base, an additive and a polar aprotic solvent to produce: , wherein LG is a leaving group; -reacting with a base, (S)-2-(piperazin-2-yl)acetonitrile or its inorganic or organic salt, and a polar aprotic solvent to produce: ; -reacting with 2-fluoroacrylic acid (or corresponding alkali or metal salts) and a coupling agent in the presence of a solvent and, optionally, a base to produce adagrasib. id="p-48" id="p-48"
[0048] In one embodiment, the invention provides a method of synthesizing adagrasib comprising the steps of: -reacting with in the presence of MeONa and MeOH to produce: ; -reacting with 2-iodopropane and sodium hydroxide in the presence of methanol to produce: ; -reacting with sodium methoxide, sodium tungstate and hydrogen peroxide in the presence of 2-propanol to produce: ; -reacting with (S)-(1-methylpyrrolidin-2-yl)methanol in the presence of potassium tert-butoxide and THF to produce: ; -reacting with bis(trifluoromethanesulfonyl)aniline in the presence of potassium phosphate tribasic K3PO4 and potassium phosphate dibasic K2HPO4 in MeCN, to produce: ; -reacting with potassium phosphate tribasic, (S)-2-(piperazin-2-yl)acetonitrile dihydrochloride and MeCN to produce: ; -reacting with the sodium salt of 2-fluoroacrylic acid in the presence of MeCN and propylphosphonic anhydride to produce adagrasib. id="p-49" id="p-49"
[0049] In another embodiment, the invention provides novel intermediate compounds, such as: ; ; ; ; ; ; and .
DETAILED DESCRIPTION OF THE INVENTION id="p-50" id="p-50"
[0050] The present invention relates to new synthetic routes for synthesizing adagrasib, as well as to novel intermediates used in the provided routes. id="p-51" id="p-51"
[0051] Although there is a known method of synthesizing adagrasib (see WO 2019/099524), the synthesis provided by the present invention is much improved, in that it has fewer steps, provides a higher isolated yield and a higher or similar purity overall. id="p-52" id="p-52"
[0052] The new and improved synthesis of MRTX849 – adagrasib – features five high yielding steps with introduction of expensive building blocks at late-stage of the process. id="p-53" id="p-53"
[0053] The previous synthesis of adagrasib involved the introduction of the 2 expensive chiral pieces back-to-back in the first and second step. Using the new approach these two pieces are introduced toward the end of the synthesis, hence greatly improving the cost effectiveness of the production. id="p-54" id="p-54"
[0054] The new route also avoids the use of protecting steps – both Boc and Cbz protecting groups were eliminated – saving time and resources on their introduction and removal, making the route eco-friendlier. id="p-55" id="p-55"
[0055] The new route circumvents the major cost contributor, palladium catalysts. Increasingly more expensive, palladium was used in 2 out of 6 steps in the previous synthesis, dramatically driving cost up. The new procedure disclosed is completely transition metal-free.
DEFINITIONS id="p-56" id="p-56"
[0056] Unless defined otherwise, all technical and scientific terms used herein have the same meaning as is commonly understood by one of skill in the art to which this invention belongs. All patents, patent applications, and publications referred to herein are incorporated by reference. id="p-57" id="p-57"
[0057] As used herein, "KRas G12C" refers to a mutant form of a mammalian KRas protein that contains an amino acid substitution of a cysteine for a glycine at amino acid position 12. The assignment of amino acid codon and residue positions for human KRas is based on the amino acid sequence identified by UniProtKB/Swiss-Prot P01116: Variant p.Gly12Cys. id="p-58" id="p-58"
[0058] A "KRas G12C-associated disease or disorder" as used herein refers to diseases or disorders associated with or mediated by or having a KRas G12C mutation. A non-limiting example of a KRas G12C-associated disease or disorder is a KRas G12C-associated cancer. id="p-59" id="p-59"
[0059] As used herein, the term "adagrasib" refers to the compound which has the name: 2-[(2S)-4-[7-(8-chloro-1-naphthyl)-2-[[(2S)-1-methylpyrrolidin-2-yl]methoxy]-6,8-dihydro-5H-pyrido[3,4-d]pyrimidin-4-yl]-1-(2-fluoroprop-2-enoyl)piperazin-2-yl]acetonitrile (also known as MRTX849) and which has the following structure: . id="p-60" id="p-60"
[0060] Adagrasib is described, for example, in Example 478 of PCT Application WO 2019/099524. id="p-61" id="p-61"
[0061] The term "adagrasib" encompasses all chiral (enantiomeric and diastereomeric) and racemic forms of the compound. id="p-62" id="p-62"
[0062] In one embodiment, the term "adagrasib" includes salts of the above compound, for instance salts formed with inorganic acids such as hydrochloric acid, hydrobromic acid, sulfuric acid, phosphoric acid, nitric acid, salts formed with organic acids such as acetic acid, oxalic acid, tartaric acid, succinic acid, malic acid, ascorbic acid, benzoic acid, tannic acid, pamoic acid, alginic acid, polyglutamic acid, naphthalenesulfonic acid, naphthalenedisulfonic acid, and polygalacturonic acid, and salts formed from quaternary ammoniums of the formula --NR+Z-, wherein R is hydrogen, alkyl, or benzyl, and Z is a counterion, including chloride, bromide, iodide, --O-alkyl, toluenesulfonate, methylsulfonate, sulfonate, phosphate, or carboxylate (such as benzoate, succinate, acetate, glycolate, maleate, malate, citrate, tartrate, ascorbate, cinnamoate, mandeloate, benzyloate, and diphenylacetate). id="p-63" id="p-63"
[0063] Whenever the application refers to a chemical compound, unless specifically stated otherwise, the compound encompasses all chiral (enantiomeric and diastereomeric) and racemic forms of the compound. id="p-64" id="p-64"
[0064] "LG" refers to a leaving group and has the meaning conventionally associated with the term "leaving group" in synthetic organic chemistry; that is, an atom or group that is displaceable under alkylating or nucleophilic aromatic substitution conditions. The term "leaving group" includes, but is not limited to, halogen, for example chlorine and bromide; alkanesulfonyloxys, for example methanesulfonyloxy and ethanesulfonyloxy; arenesulfonyloxys, for example benzylsulfonyloxy and tosyloxy; thienyloxy; dihalophosphinoyloxy; tetrahalophosphaoxy; perfluoroalkanesulfonyloxys, for example trifluoromethanesulfonyloxy and the like. The leaving group should be selected so as to be chemically less reactive (except of course when the leaving group is bromine wherein it will be equally reactive) than the reacting group, bromine, to ensure proper reaction. id="p-65" id="p-65"
[0065] Unless the application specifies differently, "R" refers to a group such as alkyl, alkenyl, alkynyl, alkylene, alkenylene, alkynylene, carbocycle, cycloalkyl, heteroalkyl, heterocycle, aryl , aralkyl, or arylalkyl. id="p-66" id="p-66"
[0066] The term "alkyl" is intended to mean a straight chain or branched aliphatic group having from 1 to 12 carbon atoms, alternatively 1-8 carbon atoms, and alternatively 1-6 carbon atoms. Other examples of alkyl groups have from 2 to 12 carbon atoms, alternatively 2-8 carbon atoms and alternatively 2-6 carbon atoms. Examples of alkyl groups include, without limitation, methyl, ethyl, propyl, isopropyl, butyl, isobutyl, sec-butyl, tert-butyl, pentyl, hexyl and the like. A "C0" alkyl (as in "C0-C3alkyl") is a covalent bond. id="p-67" id="p-67"
[0067] The term "alkenyl" is intended to mean an unsaturated straight chain or branched aliphatic group with one or more carbon-carbon double bonds, having from 2 to 12 carbon atoms, alternatively 2-8 carbon atoms, and alternatively 2-6 carbon atoms. Examples of alkenyl groups include, without limitation, ethenyl, propenyl, butenyl, pentenyl, and hexenyl. id="p-68" id="p-68"
[0068] The term "alkynyl" is intended to mean an unsaturated straight chain or branched aliphatic group with one or more carbon-carbon triple bonds, having from 2 to 12 carbon atoms, alternatively 2-8 carbon atoms, and alternatively 2-6 carbon atoms. Examples of alkynyl groups include, without limitation, ethynyl, propynyl, butynyl, pentynyl, and hexynyl. id="p-69" id="p-69"
[0069] The terms "alkylene," "alkenylene," or "alkynylene" as used herein are intended to mean an alkyl, alkenyl, or alkynyl group, respectively, as defined hereinabove, that is positioned between and serves to connect two other chemical groups. Eamples of alkylene groups include, without limitation, methylene, ethylene, propylene, and butylene. Examples of alkenylene groups include, without limitation, ethenylene, propenylene, and butenylene. Examples of alkynylene groups include, without limitation, ethynylene, propynylene, and butynylene. id="p-70" id="p-70"
[0070] The term "carbocycle" as employed herein is intended to mean a cycloalkyl or aryl moiety. id="p-71" id="p-71"
[0071] The term "cycloalkyl" is intended to mean a saturated or unsaturated mono-, bi-, tri- or poly-cyclic hydrocarbon group having about 3 to 15 carbons, alternatively having 3 to carbons, alternatively 3 to 8 carbons, alternatively 3 to 6 carbons, and alternatively 5 or carbons. In certain embodiments, the cycloalkyl group is fused to an aryl, heteroaryl or heterocyclic group. Examples of cycloalkyl groups include, without limitation, cyclopenten-2-enone, cyclopenten-2-enol, cyclohex-2-enone, cyclohex-2-enol, cyclopropyl, cyclobutyl, cyclobutenyl, cyclopentyl, cyclopentenyl, cyclohexyl, cyclohexenyl, cycloheptyl, cyclooctyl, etc. id="p-72" id="p-72"
[0072] The term "heteroalkyl" is intended to mean a saturated or unsaturated, straight chain or branched aliphatic group, wherein one or more carbon atoms in the group are independently replaced by a heteroatom selected from the group consisting of O, S, and N. id="p-73" id="p-73"
[0073] The term "aryl" is intended to mean a mono-, bi-, tri- or polycyclic aromatic moiety, for example a C6-C14aromatic moiety, for example comprising one to three aromatic rings. Alternatively, the aryl group is a C6-C10aryl group, alternatively a C6aryl group. Examples of aryl groups include, without limitation, phenyl, naphthyl, anthracenyl, and fluorenyl. id="p-74" id="p-74"
[0074] The terms "aralkyl" or "arylalkyl" are intended to mean a group comprising an aryl group covalently linked to an alkyl group. If an aralkyl group is described as "optionally substituted", it is intended that either or both of the aryl and alkyl moieties may independently be optionally substituted or unsubstituted. Alternatively, the aralkyl group is (C1-C6)alk(C6-C10)aryl, including, without limitation, benzyl, phenethyl, and naphthylmethyl. For simplicity, when written as "arylalkyl" this term, and terms related thereto, is intended to indicate the order of groups in a compound as "aryl – alkyl". Similarly, "alkyl-aryl" is intended to indicate the order of the groups in a compound as "alkyl-aryl". id="p-75" id="p-75"
[0075] As used herein, the term "pharmaceutically acceptable salt" refers to salts that retain the desired biological activity of the above-identified compounds and exhibit minimal or no undesired toxicological effects. Examples of such salts include, but are not limited to acid addition salts formed with inorganic acids (for example, hydrochloric acid, hydrobromic acid, sulfuric acid, phosphoric acid, nitric acid, and the like), and salts formed with organic acids such as acetic acid, oxalic acid, tartaric acid, succinic acid, malic acid, ascorbic acid, benzoic acid, tannic acid, pamoic acid, alginic acid, polyglutamic acid, naphthalenesulfonic acid, naphthalenedisulfonic acid, and polygalacturonic acid. The compounds can also be administered as pharmaceutically acceptable quaternary salts known by those skilled in the art, which specifically include the quaternary ammonium salt of the formula --NR+Z-, wherein R is hydrogen, alkyl, or benzyl, and Z is a counterion, including chloride, bromide, iodide, --O-alkyl, toluenesulfonate, methylsulfonate, sulfonate, phosphate, or carboxylate (such as benzoate, succinate, acetate, glycolate, maleate, malate, citrate, tartrate, ascorbate, benzoate, cinnamoate, mandeloate, benzyloate, and diphenylacetate). id="p-76" id="p-76"
[0076] As used herein, the term "mineral acid" (or "inorganic acid") refers to any acid derived from an inorganic compound that dissociates to produce hydrogen ions (H+) in water. Nonlimiting examples of mineral acids include hydrogen halides of the general formula HX (where X is F, Cl, Br or I), nitric acid, phosphoric acid, sulfuric acid, boric acid and perchloric acid. id="p-77" id="p-77"
[0077] As used herein, the term "organic acid" refers to any organic compound with acidic properties. Nonlimiting examples of organic acids include sulfonic acids of the general formula RSO3H (where R can be alkyl, alkenyl, alkynyl, carbocycle, heterocycle, aryl and are define above), carboxylic acids (with one or several carboxylic acid sites) of the general formula RCO2H (where R can be alkyl, alkenyl, alkynyl, carbocycle, heterocycle, aryl and are define above). Nonlimiting examples of organic acids are lactic acid, acetic acid, formic acid, citric acid, oxalic acid, uric acid, malic acid, and tartaric acid.
SYNTHETIC SCHEMES id="p-78" id="p-78"
[0078] In one embodiment, the invention provides a method of synthesizing adagrasib, comprising the step of: a) reacting a compound of the following structure: with a compound of the following structure: in the presence of a base and a polar solvent to produce a final compound of step (a) with the following structure: . id="p-79" id="p-79"
[0079] In one embodiment, step (a) is carried out at a temperature from about 20 °C to about 1°C. id="p-80" id="p-80"
[0080] In one embodiment, the method further comprises step (b): b) reacting the final compound of step (a) with a derivative of phosgene in the presence of an acid and a polar aprotic solvent to produce a final compound of step (b) with the following structure: . id="p-81" id="p-81"
[0081] In one embodiment, step (b) is carried out at a temperature from about 0 °C to about 1°C. id="p-82" id="p-82"
[0082] In one embodiment, the method further comprises step (c): c) reacting the final compound of step (b) with in the presence of a base and a polar aprotic solvent to produce a final compound of step (c) with the following structure: . id="p-83" id="p-83"
[0083] In one embodiment, step (c) is carried out at a temperature from about 0 °C to about 1°C. id="p-84" id="p-84"
[0084] In one embodiment, the method further comprises step (d): d) reacting the final product of step (c) with an activating agent in the presence of an additive, a polar aprotic solvent and a base, to produce a final compound of step (d) with the following structure: , wherein LG is a leaving group. id="p-85" id="p-85"
[0085] In one embodiment, step (d) is carried out at a temperature from about -20 °C to about °C. id="p-86" id="p-86"
[0086] In one embodiment, the method further comprises step (e): e) reacting the final compound of step (d) with a base in the presence of (S)-2-(piperazin-2-yl)acetonitrile or its inorganic or organic salt, and one or more of a polar aprotic solvent to produce a final compound of step (e) with the following structure: . id="p-87" id="p-87"
[0087] In one embodiment, the method further comprises step (f): f) reacting the final compound of step (e) with 2-fluoroacrylic acid (or corresponding alkali or metal salts) and a coupling agent in the presence of a solvent and, optionally, a base to produce adagrasib. id="p-88" id="p-88"
[0088] In one embodiment, step (f) is carried out at a temperature from about -10 °C to about °C. id="p-89" id="p-89"
[0089] In one embodiment, the invention provides a method of synthesizing adagrasib, comprising -reacting with 2-fluoroacrylic acid (or corresponding alkali or metal salts) and a coupling agent in the presence of a solvent and, optionally, a base to produce adagrasib. id="p-90" id="p-90"
[0090] In one embodiment, the invention provides a method of synthesizing adagrasib, comprising the steps of: - reacting , wherein LG is a leaving group, with a base in the presence of (S)-2-(piperazin-2-yl)acetonitrile or its inorganic or organic salt, and one or more of a polar aprotic solvent to produce: ; and - reacting with 2-fluoroacrylic acid (or corresponding alkali or metal salts) and a coupling agent in the presence of a solvent and, optionally, a base to produce adagrasib. id="p-91" id="p-91"
[0091] In one embodiment, the invention provides a method of synthesizing adagrasib, comprising the steps of: -reacting with an activating agent in the presence of an additive, a polar aprotic solvent and a base, to produce: , wherein LG is a leaving group; - reacting , with a base in the presence of (S)-2-(piperazin-2-yl)acetonitrile or its inorganic or organic salt, and one or more of a polar aprotic solvent to produce: ; and - reacting with 2-fluoroacrylic acid (or corresponding alkali or metal salts) and a coupling agent in the presence of a solvent and, optionally, a base to produce adagrasib. id="p-92" id="p-92"
[0092] In one embodiment, the invention provides a method of synthesizing adagrasib, comprising the steps of: -reacting with in the presence of a base and a polar aprotic solvent to produce: ; -reacting with an activating agent in the presence of an additive, a polar aprotic solvent and a base, to produce: , wherein LG is a leaving group; - reacting , with a base in the presence of (S)-2-(piperazin-2-yl)acetonitrile or its inorganic or organic salt, and one or more of a polar aprotic solvent to produce: ; and - reacting with 2-fluoroacrylic acid (or corresponding alkali or metal salts) and a coupling agent in the presence of a solvent and, optionally, a base to produce adagrasib. id="p-93" id="p-93"
[0093] In one embodiment, the invention provides a method of synthesizing adagrasib, comprising the steps of: -reacting with a derivative of phosgene in the presence of an acid and a polar solvent to produce: ; -reacting with in the presence of a base and a polar aprotic solvent to produce: ; -reacting with an activating agent in the presence of an additive, a polar aprotic solvent and a base, to produce: , wherein LG is a leaving group; - reacting , with a base in the presence of (S)-2-(piperazin-2-yl)acetonitrile or its inorganic or organic salt, and one or more of a polar aprotic solvent to produce: ; and - reacting with 2-fluoroacrylic acid (or corresponding alkali or metal salts) and a coupling agent in the presence of a solvent and, optionally, a base to produce adagrasib. id="p-94" id="p-94"
[0094] In one embodiment, the invention provides a method of synthesizing adagrasib, comprising the steps of: -reacting with in the presence of a base and a polar solvent to produce: ; -reacting with a derivative of phosgene in the presence of an acid and a polar solvent to produce: ; -reacting with in the presence of a base and a polar aprotic solvent to produce: ; -reacting with an activating agent in the presence of an additive, a polar aprotic solvent and a base, to produce: , wherein LG is a leaving group; - reacting with a base in the presence of (S)-2-(piperazin-2-yl)acetonitrile or its inorganic or organic salt, and one or more of a polar aprotic solvent to produce: ; and - reacting with 2-fluoroacrylic acid (or corresponding alkali or metal salts) and a coupling agent in the presence of a solvent and, optionally, a base to produce adagrasib. id="p-95" id="p-95"
[0095] In one embodiment, the invention provides a method of synthesizing adagrasib, comprising the steps of: -reacting with in the presence of MeONa and MeOH to produce: ; -reacting with triphosgene in the presence of hydrogen chloride and 2-MeTHF to produce: ; -reacting with in the presence of sodium tert-amylate and 2-MeTHF to produce: ; -reacting with bis(trifluoromethanesulfonyl)aniline in the presence of potassium phosphate tribasic K3PO4 and potassium phosphate dibasic K2HPO4 in MeCN, to produce: ; - reacting with potassium phosphate tribasic in the presence of (S)-2-(piperazin-2-yl)acetonitrile dihydrochloride, 2-MeTHF and MeCN to produce: ; and - reacting with the sodium salt of 2-fluoroacrylic acid in the presence of MeCN and propylphosphonic anhydride to produce adagrasib. id="p-96" id="p-96"
[0096] In another embodiment, the invention provides an alternative route of synthesizing adagrasib. Thus, in one embodiment, the invention provides a method of synthesizing adagrasib, comprising the step of: a’) reacting with in the presence of a base and a polar solvent to produce a final compound of step (a’) with the following structure: . id="p-97" id="p-97"
[0097] In one embodiment, step (a’) is carried out at a temperature from about 0 °C to about 1°C. id="p-98" id="p-98"
[0098] In one embodiment, the invention provides a method of synthesizing adagrasib, further comprising step (b’): b’) reacting the final compound of step (a’) with an alkylating or arylating agent with a base in the presence of a polar solvent to produce a final compound of step (b’) with the following structure: , wherein R is methyl, ethyl, isopropyl, or benzyl. id="p-99" id="p-99"
[0099] In one embodiment, step (b’) is carried out at a temperature from about 20 °C to about 120 °C. id="p-100" id="p-100"
[00100] In one embodiment, the invention provides a method of synthesizing adagrasib, further comprising step (c’): c’) reacting the final compound of step (b’) with an oxidizing agent in the presence of a polar aprotic solvent, and, optionally, a catalyst and a base, to produce a final compound of step (c’) with the following structure: , wherein R is methyl, ethyl, isopropyl, or benzyl. id="p-101" id="p-101"
[00101] In one embodiment, step (c’) is carried out at a temperature from about 0 °C to about 120 °C. id="p-102" id="p-102"
[00102] In one embodiment, the invention provides a method of synthesizing adagrasib, further comprising step (d’): d’) reacting the final product of step (c’) with (S)-(1-methylpyrrolidin-2-yl)methanol in the presence of a base and a polar aprotic solvent to produce a final compound of step (d’) with the following structure: . id="p-103" id="p-103"
[00103] In one embodiment, step (d’) is carried out at a temperature from about -20 °C to about 50 °C. id="p-104" id="p-104"
[00104] In one embodiment, the invention provides a method of synthesizing adagrasib, further comprising step (e’): e’) reacting the final product of step (d’) with an activating agent in the presence of a base, an additive and a polar aprotic solvent to produce a final compound of step (e’) with the following structure: , wherein LG is a leaving group. id="p-105" id="p-105"
[00105] In one embodiment, step (e’) is carried out at a temperature from about -20 °C to about 70 °C. id="p-106" id="p-106"
[00106] In one embodiment, the invention provides a method of synthesizing adagrasib, further comprising step (f’): f’) reacting the final product of step (e’) with a base, (S)-2-(piperazin-2-yl)acetonitrile or its inorganic or organic salt, and a polar aprotic solvent to produce a final compound of step (f’) with the following structure: . id="p-107" id="p-107"
[00107] In one embodiment, step (f’) is carried out at a temperature from about 20 °C to about 120 °C. id="p-108" id="p-108"
[00108] In one embodiment, the invention provides a method of synthesizing adagrasib, further comprising step (g’): g’) reacting the final compound of step (f’) with 2-fluoroacrylic acid (or corresponding alkali or metal salts) and a coupling agent in the presence of a solvent and, optionally, a base to produce adagrasib. id="p-109" id="p-109"
[00109] In one embodiment, step (g’) is carried out at a temperature from about -10 °C to about 50 °C. id="p-110" id="p-110"
[00110] In one embodiment, the invention provides a method of synthesizing adagrasib comprising reacting with 2-fluoroacrylic acid (or corresponding alkali or metal salts) and a coupling agent in the presence of a solvent and, optionally, a base to produce adagrasib. id="p-111" id="p-111"
[00111] In one embodiment, the invention provides a method of synthesizing adagrasib comprising the steps of: -reacting , wherein LG is a leaving group, with a base, (S)-2-(piperazin-2-yl)acetonitrile or its inorganic or organic salt, and a polar aprotic solvent to produce: ; -reacting with 2-fluoroacrylic acid (or corresponding alkali or metal salts) and a coupling agent in the presence of a solvent and, optionally, a base to produce adagrasib. id="p-112" id="p-112"
[00112] In one embodiment, the invention provides a method of synthesizing adagrasib comprising the steps of: -reacting with an activating agent in the presence of a base, an additive and a polar aprotic solvent to produce: , wherein LG is a leaving group; -reacting with a base, (S)-2-(piperazin-2-yl)acetonitrile or its inorganic or organic salt, and a polar aprotic solvent to produce: ; -reacting with 2-fluoroacrylic acid (or corresponding alkali or metal salts) and a coupling agent in the presence of a solvent and, optionally, a base to produce adagrasib. id="p-113" id="p-113"
[00113] In one embodiment, the invention provides a method of synthesizing adagrasib comprising the steps of: -reacting wherein R is methyl, ethyl, isopropyl, or benzyl, with (S)-(1-methylpyrrolidin-2-yl)methanol in the presence of a base and a polar aprotic solvent to produce: ; -reacting with an activating agent in the presence of a base, an additive and a polar aprotic solvent to produce: , wherein LG is a leaving group; -reacting with a base, (S)-2-(piperazin-2-yl)acetonitrile or its inorganic or organic salt, and a polar aprotic solvent to produce: ; -reacting with 2-fluoroacrylic acid (or corresponding alkali or metal salts) and a coupling agent in the presence of a solvent and, optionally, a base to produce adagrasib. id="p-114" id="p-114"
[00114] In one embodiment, the invention provides a method of synthesizing adagrasib comprising the steps of: -reacting , wherein R is methyl, ethyl, isopropyl, or benzyl, with an oxidizing agent in the presence of a polar aprotic solvent, and, optionally, a catalyst and a base, to produce: ; -reacting , with (S)-(1-methylpyrrolidin-2-yl)methanol in the presence of a base and a polar aprotic solvent to produce: ; -reacting with an activating agent in the presence of a base, an additive and a polar aprotic solvent to produce: , wherein LG is a leaving group; -reacting with a base, (S)-2-(piperazin-2-yl)acetonitrile or its inorganic or organic salt, and a polar aprotic solvent to produce: ; -reacting with 2-fluoroacrylic acid (or corresponding alkali or metal salts) and a coupling agent in the presence of a solvent and, optionally, a base to produce adagrasib. id="p-115" id="p-115"
[00115] In one embodiment, the invention provides a method of synthesizing adagrasib comprising the steps of: -reacting with an alkylating or arylating agent and a base in the presence of a polar solvent to produce: wherein R is methyl, ethyl, isopropyl, or benzyl; -reacting , with an oxidizing agent in the presence of a polar aprotic solvent, and, optionally, a catalyst and a base, to produce: wherein R is methyl, ethyl, isopropyl, or benzyl; -reacting , with (S)-(1-methylpyrrolidin-2-yl)methanol in the presence of a base and a polar aprotic solvent to produce: ; -reacting with an activating agent in the presence of a base, an additive and a polar aprotic solvent to produce: , wherein LG is a leaving group; -reacting with a base, (S)-2-(piperazin-2-yl)acetonitrile or its inorganic or organic salt, and a polar aprotic solvent to produce: ; -reacting with 2-fluoroacrylic acid (or corresponding alkali or metal salts) and a coupling agent in the presence of a solvent and, optionally, a base to produce adagrasib. id="p-116" id="p-116"
[00116] In one embodiment, the invention provides a method of synthesizing adagrasib comprising the steps of: 1 reacting with in the presence of a base and a polar solvent to produce a final compound of step (a’) with the following structure: ; -reacting with an alkylating or arylating agent and a base in the presence of a polar solvent to produce: 1 , wherein R is methyl, ethyl, isopropyl, or benzyl; -reacting , with an oxidizing agent in the presence of a polar aprotic solvent, and, optionally, a catalyst and a base, to produce: , wherein R is methyl, ethyl, isopropyl, or benzyl; 1 -reacting , with (S)-(1-methylpyrrolidin-2-yl)methanol in the presence of a base and a polar aprotic solvent to produce: ; -reacting with an activating agent in the presence of a base, an additive and a polar aprotic solvent to produce: 1 , wherein LG is a leaving group; -reacting with a base, (S)-2-(piperazin-2-yl)acetonitrile or its inorganic or organic salt, and a polar aprotic solvent to produce: ; 1 -reacting with 2-fluoroacrylic acid (or corresponding alkali or metal salts) and a coupling agent in the presence of a solvent and, optionally, a base to produce adagrasib. id="p-117" id="p-117"
[00117] In one embodiment, the invention provides a method of synthesizing adagrasib comprising the steps of: -reacting with in the presence of MeONa and MeOH to produce: 1 ; -reacting with 2-iodopropane and sodium hydroxide in the presence of methanol to produce: ; 1 -reacting with sodium methoxide, sodium tungstate and hydrogen peroxide in the presence of 2-propanol to produce: ; -reacting with (S)-(1-methylpyrrolidin-2-yl)methanol in the presence of potassium tert-butoxide and THF to produce: 1 ; -reacting with bis(trifluoromethanesulfonyl)aniline in the presence of potassium phosphate tribasic K3PO4 and potassium phosphate dibasic K2HPO4 in MeCN, to produce: ; 1 -reacting with potassium phosphate tribasic, (S)-2-(piperazin-2-yl)acetonitrile dihydrochloride and MeCN to produce: ; 1 -reacting with the sodium salt of 2-fluoroacrylic acid in the presence of MeCN and propylphosphonic anhydride to produce adagrasib. id="p-118" id="p-118"
[00118] In one embodiment, in step (a), the polar solvent is selected from the group consisting of dimethylacetamide (DMAc), dimethylformamide (DMF), 1,4-dioxane, tetrahydrofuran (THF), 2-methyltetrahydrofuran (2-MeTHF), acetonitrile (MeCN), dimethyl sulfoxide (DMSO), N-methylpyrrolidone (NMP), and an alcohol with a formula R-OH, wherein R is alkyl, allyl or aryl. id="p-119" id="p-119"
[00119] In one embodiment, in step (a), the polar solvent comprises, but is not limited to, one or more of the following: DMAc, DMF, 1,4-dioxane, THF, 2-MeTHF, MeCN, DMSO, NMP and an alcohol with a formula R-OH, wherein R can be, but is not limited to alkyl, allyl or aryl. id="p-120" id="p-120"
[00120] In one embodiment, in step (a), the polar solvent is methanol (MeOH). id="p-121" id="p-121"
[00121] In one embodiment, in step (a), a base is selected from the group consisting of methoxide, ethoxide, iso-propoxide, tert-butoxide and tert-amylate. id="p-122" id="p-122"
[00122] In one embodiment, in step (a), the base comprises, but is not limited to, one or more of the following: methoxide, ethoxide, iso-propoxide, tert-butoxide and tert-amylate. id="p-123" id="p-123"
[00123] In one embodiment, in step (a), the base is sodium methoxide. 1 id="p-124" id="p-124"
[00124] In one embodiment, in step (b), the phosgene derivative is selected from the group consisting of phosgene, disphosgene, triphosgene, thiophosgene and 1,1’-carbonyldiimidazole. id="p-125" id="p-125"
[00125] In one embodiment, in step (b), the phosgene derivative comprises, but is not limited to, one or more of the following: phosgene, disphosgene, triphosgene, thiophosgene and 1,1’-carbonyldiimidazole. id="p-126" id="p-126"
[00126] In one embodiment, in step (b), the phosgene derivative is triphosgene. id="p-127" id="p-127"
[00127] In one embodiment, in step (b), the polar aprotic solvent is selected from the group consisting of DMAc, DMF, 1,4-dioxane, THF, 2-MeTHF, MeCN, DMSO, and NMP. id="p-128" id="p-128"
[00128] In one embodiment, in step (b), the polar aprotic solvent comprises, but is not limited to, one or more of the following: DMAc, DMF, 1,4-dioxane, THF, 2-MeTHF, MeCN, DMSO, and NMP. id="p-129" id="p-129"
[00129] In one embodiment, in step (b), the polar aprotic solvent is 2-MeTHF. id="p-130" id="p-130"
[00130] In one embodiment, in step (b), the mineral acid is selected from the group consisting of hydrogen chloride, hydrochloric acid, sulfuric acid, nitric acid and phosphoric acid. id="p-131" id="p-131"
[00131] In one embodiment, in step (b), the mineral acid comprises, but is not limited to, one or more of the following: hydrogen chloride, hydrochloric acid, sulfuric acid, nitric acid and phosphoric acid. id="p-132" id="p-132"
[00132] In one embodiment, in step (b), the mineral acid is hydrogen chloride. id="p-133" id="p-133"
[00133] In one embodiment, in step (c), the base is a bulky alkoxide selected from the group consisting of iso-propoxide, tert-butoxide and tert-amylate. id="p-134" id="p-134"
[00134] In one embodiment, in step (c), the base is a bulky alkoxide which comprises, but is not limited to, one or more of the following: iso-propoxide, tert-butoxide and tert-amylate. id="p-135" id="p-135"
[00135] In one embodiment, in step (c), the base is sodium tert-amylate. id="p-136" id="p-136"
[00136] In one embodiment, in step (c), the polar aprotic solvent is selected from the group consisting of DMAc, DMF, 1,4-dioxane, THF, 2-MeTHF, MeCN, DMSO, and NMP. 1 id="p-137" id="p-137"
[00137] In one embodiment, in step (c), the polar aprotic solvent comprises, but is not limited to, one or more of the following: DMAc, DMF, 1,4-dioxane, THF, 2-MeTHF, MeCN, DMSO, and NMP. id="p-138" id="p-138"
[00138] In one embodiment, in step (c), the polar aprotic solvent is 2-MeTHF. id="p-139" id="p-139"
[00139] In one embodiment, in steps (d) and (e), the activating agent is selected from the group consisting of sulfonyl halide R-SO2X (where R is tolyl, mesityl, nosyl, methyl, ethyl, or propyl and X is F, Cl or Br), anhydride (trifluoromethanesulfonic anhydride and nonafluorobutanesulfonic anhydride) and organic triflate reagent R-N-Tf2 (where R is phenyl, 5-chloro-2-pyridine, 2-pyridine). id="p-140" id="p-140"
[00140] In one embodiment, in steps (d) and (e), the activating agent comprises, but is not limited to, one or more of the following: sulfonyl halide R-SO2X (where R can be, but is not limited to tolyl, mesityl, nosyl, methyl, ethyl, or propyl and X can be, but is not limited to, F, Cl or Br), anhydride (trifluoromethanesulfonic anhydride and nonafluorobutanesulfonic anhydride) and organic triflate reagent R-N-Tf2 (where R is phenyl, 5-chloro-2-pyridine, 2-pyridine). id="p-141" id="p-141"
[00141] In one embodiment, in step (d), the activating agent is bis(trifluoromethanesulfonyl)aniline. id="p-142" id="p-142"
[00142] In one embodiment, in steps (d) and (e), the base is an inorganic base. id="p-143" id="p-143"
[00143] In one embodiment, the inorganic base is selected from the group consisting of carbonate, bicarbonate, and phosphate (including mono-, di- and tribasic phosphate). id="p-144" id="p-144"
[00144] In one embodiment, the inorganic base comprises, but is not limited to, one or more of the following: carbonate, bicarbonate, and phosphate (including mono-, di- and tribasic phosphate). id="p-145" id="p-145"
[00145] In one embodiment, the inorganic base is used with an alkali salt selected from the group consisting of lithium, sodium, and potassium. id="p-146" id="p-146"
[00146] In one embodiment, the inorganic base is used with an alkali salt that comprises, but is not limited to, one or more of the following: lithium, sodium, and potassium. 1 id="p-147" id="p-147"
[00147] In one embodiment, in step (d), the base is potassium phosphate tribasic and dibasic. id="p-148" id="p-148"
[00148] In one embodiment, in steps (d) and (e), the polar aprotic solvent is selected from the group consisting of DMAc, DMF, 1,4-dioxane, THF, 2-MeTHF, MeCN, DMSO, and NMP. id="p-149" id="p-149"
[00149] In one embodiment, in steps (d) and (e), the polar aprotic solvent comprises, but is not limited to, one or more of the following: DMAc, DMF, 1,4-dioxane, THF, 2-MeTHF, MeCN, DMSO, and NMP. id="p-150" id="p-150"
[00150] In one embodiment, in step (d), the polar aprotic solvent is MeCN. id="p-151" id="p-151"
[00151] In one embodiment, in step (e), the polar aprotic solvent is MeCN. id="p-152" id="p-152"
[00152] In one embodiment, in step (f), 2-fluoroacrylic acid can be used in the neutral form, free acid, or ionic form (as a metal or alkali salt). id="p-153" id="p-153"
[00153] In one embodiment, in step (f), the coupling agent is selected from the group consisting of propylphosphonic anhydride (T3P®), carbonyldiimidazole (CDI), the carbodiimide (e.g. dicyclohexylcarbodiimide (DCC), diisopropylcarbodiimide (DIC), ethyl-( N ’,N’-dimethylamino)propylcarbodiimide hydrochloride (EDC.HCl)), the phosphonium ((benzotriazol-1-yloxy)tris(dimethylamino)phosphonium hexafluorophosphate (BOP), (benzotriazol-1-yloxy)tripyrrolidinophosphonium hexafluorophosphate (PyBOP)) and uronium (O-(benzotriazol-1-yl)-N,N ,N ’,N’-tetramethyluronium hexafluorophosphate (HBTU), O-(7-azabenzotriazol-1-yl)-N,N ,N ’,N’-tetramethyluronium hexafluorophosphate (HATU)) . id="p-154" id="p-154"
[00154] In one embodiment, in step (f), the base is an organic base. id="p-155" id="p-155"
[00155] In one embodiment, the organic base is selected from the group consisting of DIPEA, Et3N, DABCO, and DBU. id="p-156" id="p-156"
[00156] In one embodiment, wherein in step (f), the base is an inorganic base. id="p-157" id="p-157"
[00157] In one embodiment, the inorganic base is selected from the group consisting of carbonate, bicarbonate, and phosphate. 1 id="p-158" id="p-158"
[00158] In one embodiment, in step (f), the solvent is selected from the group consisting of DMAc, DMF, 1,4-dioxane, THF, 2-MeTHF, MeCN, DMSO, DCM, EtOAc, IPAc, and NMP. id="p-159" id="p-159"
[00159] In one embodiment, in step (f), the solvent comprises, but is not limited to, one or more of the following: DMAc, DMF, 1,4-dioxane, THF, 2-MeTHF, MeCN, DMSO, DCM, EtOAc, IPAc, and NMP. id="p-160" id="p-160"
[00160] In one embodiment, in steps (a’) and (b’), the polar solvent is selected from the group consisting of DMAc, DMF, 1,4-dioxane, THF, 2-MeTHF, MeCN, DMSO, NMP, and an alcohol with a formula R-OH, wherein R is alkyl, allyl or aryl. id="p-161" id="p-161"
[00161] In one embodiment, in steps (a’) and (b’), the polar solvent comprises, but is not limited to, one or more of the following: DMAc, DMF, 1,4-dioxane, THF, 2-MeTHF, MeCN, DMSO, NMP and an alcohol with a formula R-OH, wherein R can be, but is not limited to alkyl, allyl or aryl. id="p-162" id="p-162"
[00162] In one embodiment, in step (a’), the polar solvent is MeOH. id="p-163" id="p-163"
[00163] In one embodiment, in step (a’), a base is selected from the group consisting of methoxide, ethoxide, iso-propoxide, tert-butoxide and tert-amylate. id="p-164" id="p-164"
[00164] In one embodiment, in step (a’), the base comprises, but is not limited to, one or more of the following: methoxide, ethoxide, iso-propoxide, tert-butoxide and tert-amylate. id="p-165" id="p-165"
[00165] In one embodiment, in step (a’), the base is sodium methoxide. id="p-166" id="p-166"
[00166] In one embodiment, in step (b’), the alkylating or arylating agent is selected from the group consisting of aryl halides or alkyl halides R-X (where R is methyl, ethyl, isopropyl, or benzyl and X is Cl, Br, I, alkyl sulfonate, aryl sulfonate, triflate or nonaflate), di-alkyl sulfate and carbonate. id="p-167" id="p-167"
[00167] In one embodiment, in step (b’), the alkylating or arylating agent comprises, but is not limited to, one or more of the following: aryl halides, alkyl halides R-X (where R can be, but is not limited to, methyl, ethyl, isopropyl, or benzyl and X can be, but is not limited to, Cl, Br, I, alkyl sulfonate, aryl sulfonate, triflate or nonaflate), di-alkyl sulfate and carbonate. 1 id="p-168" id="p-168"
[00168] In one embodiment, the alkylating agent is 2-iodopropane. id="p-169" id="p-169"
[00169] In one embodiment, in step (b’), the base is an inorganic base. id="p-170" id="p-170"
[00170] In one embodiment, the inorganic base is selected from the group consisting of hydroxide, carbonate, bicarbonate, and phosphate (including mono-, di- and tribasic phosphate). id="p-171" id="p-171"
[00171] In one embodiment, the inorganic base comprises, but is not limited to, one or more of the following: hydroxide, carbonate, bicarbonate, and phosphate (including mono-, di- and tribasic phosphate). id="p-172" id="p-172"
[00172] In one embodiment, the inorganic base is used with an alkali salt selected from the group consisting of lithium, sodium, and potassium. id="p-173" id="p-173"
[00173] In one embodiment, in step (b’), the base is sodium hydroxide. id="p-174" id="p-174"
[00174] In one embodiment, in step (c’), the oxidizing agent is selected from the group consisting of peracid, oxone, bleach, hydrogen peroxide and urea hydrogen peroxide. id="p-175" id="p-175"
[00175] In one embodiment, in step (c’), the oxidizing agent comprises, but is not limited to, one or more of the following: peracid (such as meta-chloroperbenzoic acid or peracetic acid), oxone, bleach, hydrogen peroxide and urea hydrogen peroxide. id="p-176" id="p-176"
[00176] In one embodiment, in step (c’), the catalyst is selected from the group consisting of sodium tungstate, phenylphosphonic acid, and methyltrioctylammonium hydrogensulfate. id="p-177" id="p-177"
[00177] In one embodiment, in step (c’), the catalyst comprises, but is not limited to, one or more of the following: sodium tungstate, phenylphosphonic acid, and methyltrioctylammonium hydrogensulfate. id="p-178" id="p-178"
[00178] In one embodiment, in step (c’), the catalyst is sodium tungstate. id="p-179" id="p-179"
[00179] In one embodiment, in step (c’), a base is selected from the group consisting of methoxide, ethoxide, iso-propoxide, tert-butoxide and tert-amylate. id="p-180" id="p-180"
[00180] In one embodiment, in step (c’), the base comprises, but is not limited to, one or more of the following: methoxide, ethoxide, iso-propoxide, tert-butoxide and tert-amylate. 1 id="p-181" id="p-181"
[00181] In one embodiment, in step (c’), the ammonium or alkali salt is selected from the group consisting of lithium, sodium, and potassium. id="p-182" id="p-182"
[00182] In one embodiment, in step (c’), the ammonium or alkali salt comprises, but is not limited to, one or more of the following: lithium, sodium, and potassium. id="p-183" id="p-183"
[00183] In one embodiment, in step (c’), the base is sodium methoxide. id="p-184" id="p-184"
[00184] In one embodiment, in step (c’), the polar aprotic solvent is selected from the group consisting of DMAc, DMF, 1,4-dioxane, THF, 2-MeTHF, MeCN, DMSO, 2-propanol and NMP. id="p-185" id="p-185"
[00185] In one embodiment, in step (c’), the polar aprotic solvent comprises, but is not limited to, one or more of the following: DMAc, DMF, 1,4-dioxane, THF, 2-MeTHF, MeCN, DMSO, 2-propanol and NMP. id="p-186" id="p-186"
[00186] In one embodiment, in step (d’), the base is a bulky alkoxide selected from the group consisting of iso-propoxide, tert-butoxide and tert-amylate. id="p-187" id="p-187"
[00187] In one embodiment, in step (d’), the base is a bulky alkoxide which comprises, but is not limited to, one or more of the following: iso-propoxide, tert-butoxide and tert-amylate. id="p-188" id="p-188"
[00188] In one embodiment, in step (d’), the base is potassium tert-butoxide. id="p-189" id="p-189"
[00189] In one embodiment, in step (d’), the polar aprotic solvent is selected from the group consisting of DMAc, DMF, 1,4-dioxane, THF, 2-MeTHF, MeCN, DMSO, and NMP. id="p-190" id="p-190"
[00190] In one embodiment, in step (d’), the polar aprotic solvent comprises, but is not limited to, one or more of the following: DMAc, DMF, 1,4-dioxane, THF, 2-MeTHF, MeCN, DMSO, and NMP. id="p-191" id="p-191"
[00191] In one embodiment, in step (d’), the polar aprotic solvent is THF. id="p-192" id="p-192"
[00192] In one embodiment, in steps (e’) and (f’), the activating agent is selected from the group consisting of sulfonyl halide R-SO2X (where R is tolyl, mesityl, nosyl, methyl, ethyl, or propyl and X is F, Cl or Br), anhydride (trifluoromethanesulfonic anhydride and 1 nonafluorobutanesulfonic anhydride) and organic triflate reagent R-N-Tf2 (where R is phenyl, 5-chloro-2-pyridine, 2-pyridine). id="p-193" id="p-193"
[00193] In one embodiment, in steps (e’) and (f’), the activating agent comprises, but is not limited to, one or more of the following: sulfonyl halide R-SO2X (where R can be, but is not limited to tolyl, mesityl, nosyl, methyl, ethyl, or propyl and X can be, but is not limited to, F, Cl or Br), anhydride (trifluoromethanesulfonic anhydride and nonafluorobutanesulfonic anhydride) and organic triflate reagent R-N-Tf2 (where R is phenyl, 5-chloro-2-pyridine, or 2-pyridine). id="p-194" id="p-194"
[00194] In one embodiment, the activating agent in steps (e’) and/or (f’) is bis(trifluoromethanesulfonyl)aniline. id="p-195" id="p-195"
[00195] In one embodiment, in steps (e’) and (f’), the base is an inorganic base. id="p-196" id="p-196"
[00196] In one embodiment, the inorganic base is selected from the group consisting of carbonate, bicarbonate, and phosphate (including mono-, di- and tribasic phosphate). id="p-197" id="p-197"
[00197] In one embodiment, the inorganic base comprises, but is not limited to, one or more of the following: carbonate, bicarbonate, and phosphate (including mono-, di- and tribasic phosphate). id="p-198" id="p-198"
[00198] In one embodiment, the inorganic base is used with an alkali salt selected from the group consisting of lithium, sodium, and potassium. id="p-199" id="p-199"
[00199] In one embodiment, the inorganic base is used with an alkali salt that comprises, but is not limited to, one or more of the following: lithium, sodium, and potassium. id="p-200" id="p-200"
[00200] In one embodiment, in step (e’), the inorganic base is potassium phosphate tribasic and dibasic. id="p-201" id="p-201"
[00201] In one embodiment, in steps (e’) and (f’), the polar aprotic solvent is selected from the group consisting of DMAc, DMF, 1,4-dioxane, THF, 2-MeTHF, MeCN, DMSO, and NMP. 1 id="p-202" id="p-202"
[00202] In one embodiment, in steps (e’) and (f’), the polar aprotic solvent comprises, but is not limited to, one or more of the following: DMAc, DMF, 1,4-dioxane, THF, 2-MeTHF, MeCN, DMSO, and NMP. id="p-203" id="p-203"
[00203] In one embodiment, in steps (e’) and (f’), the polar aprotic solvent is MeCN. id="p-204" id="p-204"
[00204] In one embodiment, in step (g’), 2-fluoroacrylic acid can be used in the neutral form, free acid, or ionic form (as a metal or alkali salt). id="p-205" id="p-205"
[00205] In one embodiment, in step (g’), the coupling agent is selected from the group consisting of T3P®, CDI, the carbodiimide (e.g. DCC, DIC, EDC.HCl), BOP, PyBOP, HBTU, HATU . id="p-206" id="p-206"
[00206] In one embodiment, in step (g’), the base is an organic base. id="p-207" id="p-207"
[00207] In one embodiment, the organic base is selected from the group consisting of DIPEA, Et3N, DABCO, and DBU. id="p-208" id="p-208"
[00208] In one embodiment, wherein in step (g’), the base is an inorganic base. id="p-209" id="p-209"
[00209] In one embodiment, the inorganic base is selected from the group consisting of carbonate, bicarbonate, and phosphate. id="p-210" id="p-210"
[00210] In one embodiment, in step (g’), the solvent is selected from the group consisting of DMAc, DMF, 1,4-dioxane, THF, 2-MeTHF, MeCN, DMSO, DCM, EtOAc, IPAc, and NMP. id="p-211" id="p-211"
[00211] In one embodiment, in step (g’), the solvent comprises, but is not limited to, one or more of the following: DMAc, DMF, 1,4-dioxane, THF, 2-MeTHF, MeCN, DMSO, DCM, EtOAc, IPAc, and NMP. id="p-212" id="p-212"
[00212] The following Examples are intended to illustrate further certain embodiments of the invention and are not intended to limit the scope of the invention. 1 EXAMPLE 1 Step (a) id="p-213" id="p-213"
[00213] Methyl 1-(8-chloronaphthalen-1-yl)-5-hydroxy-1,2,3,6-tetrahydropyridine-4-carboxylate (75 g, 236 mmol, 1.0 equiv.) was charged into a 2 L glass-lined reactor followed by thiourea (54 g, 708 mmol, 3 equiv.). Methanol (750 mL) was then added. Reaction was stirred at 20°C. Sodium methoxide (34 g, 590 mmol, 2.5 equiv.) was added in one portion to the reaction at 20°C. Following this, the reaction was allowed to react at 60°C until starting material area was ≤1.0 area% (ca. 4 h). The mixture was then cooled to 20°C and purified water (750 mL) was added. Mixture was filtered through a pad of celite and transferred to a clan reactor. A 2N hydrochloric acid solution was slowly added to the reaction at 15-25 °C until pH = 4-5. Heavy precipitation is observed upon addition of the hydrochloric acid solution. The solid was then filtered off and re-slurried with purified water (375 mL) before a second filtration. Solid was dried until constant mass under nitrogen flow and low vacuum at T ≤45°C. 7-(8-Chloronaphthalen-1-yl)-2-thioxo-2,3,5,6,7,8-hexahydropyrido[3,4-d]pyrimidin-4(1H)-one was obtained as a light yellow solid (77 g, 225 mmol, 95% yield). id="p-214" id="p-214"
[00214] M.p.: 237.5 – 237.6 °C (dec.). id="p-215" id="p-215"
[00215] H NMR(500 MHz, DMSO-d6) δ ppm 2.35 (br d, J = 16.4 Hz, 1H), 2.51 - 2.(m, 1H), 3.05 - 3.16 (m, 1H), 3.36 - 3.45 (m, 1H), 3.57 (br d, J = 17.0 Hz, 1H), 3.94 (d, J = 17.Hz, 1H), 7.27 - 7.36 (m, 1H), 7.39 - 7.48 (m, 1H), 7.53 (t, J = 7.9 Hz, 1H), 7.59 (dd, J = 7.4, 1.Hz, 1H), 7.74 (d, J = 7.7 Hz, 1H), 7.85 - 7.96 (m, 1H), 11.68 - 12.50 (br s, 1H). id="p-216" id="p-216"
[00216] C NMR (126 MHz, DMSO-d6) δ ppm 21.6, 49.7, 53.5, 109.8, 119.7, 125.5, 126.5, 127.3, 129.1, 129.3, 130.1, 137.5, 148.3, 150.1, 161.9, 172.9, 174.9. id="p-217" id="p-217"
[00217] HRMS (ESI) calculated for C17H15ClN3OS: 344.0624 [M+H]+, Found: 344.0779. 1 EXAMPLE 2 Step (b) id="p-218" id="p-218"
[00218] 7-(8-Chloronaphthalen-1-yl)-2-thioxo-2,3,5,6,7,8-hexahydropyrido[3,4-d]pyrimidin-4(1H)-one (10 g, 29 mmol, 1.0 equiv.) was charged into a 400 mL EasyMax reactor followed by 2-MeTHF (200 mL). Reaction was stirred at 25 °C. Hydrogen chloride 4N in dioxane (7.3 mL, 29 mmol, 1.0 equiv.) was then charged. Triphosgene (8.6 g, 29 mmol, 1.equiv.) was added to the reaction at 25°C. Following this, the reaction was allowed to react at °C until starting material area was ≤0.5 area% (ca. 24 h). The mixture was then cooled to 15 °C and purified water (50 mL) was added. A 1N sodium hydroxide solution was slowly added to the reaction at 15-25 °C until pH = 5-6 under stirring. Following this, the mixture was stirred for min at a temperature of 15 °C, and the layers were allowed to settle before separation. Aqueous phase was discarded, and organic phase was concentrated until solution volume is ca. 30 mL. Heptane (50 mL) was then added and then volatiles were removed from the slurry. Solid was dried until constant mass under nitrogen flow and low vacuum at T ≤45 °C. 2-Chloro-7-(8-chloronaphthalen-1-yl)-5,6,7,8-tetrahydropyrido[3,4-d]pyrimidin-4(3H)-one was obtained as a yellow solid (8.5 g, 25 mmol, 85% yield). id="p-219" id="p-219"
[00219] M.p.: 200.7 – 200.8 °C (dec.). id="p-220" id="p-220"
[00220] H NMR (500 MHz, DMSO-d6) δ ppm 2.54 (br s, 1H), 2.71 - 2.85 (m, 1H), 3.(br s, 1H), 3.44 - 3.52 (m, 1H), 3.82 (m, 1H), 3.99 (m, 1H), 7.33 - 7.37 (m, 1H), 7.44 (t, J = 7.Hz, 1H), 7.53 (t, J = 7.9 Hz, 1H), 7.57 (dd, J = 7.4, 1.4 Hz, 1H), 7.74 (d, J = 7.7 Hz, 1H), 7.(dd, J = 8.2, 1.1 Hz, 1H), 13.39 (m, 1H). 1 id="p-221" id="p-221"
[00221] C NMR (126 MHz, DMSO-d6) δ ppm 164.5, 151.3, 148.3, 147.4, 137.5, 130.1, 129.3, 129.1, 127.3, 126.4, 125.5, 125.4, 119.5, 104.4, 57.1, 49.8, 22.3. id="p-222" id="p-222"
[00222] HRMS (ESI) calculated for C17H14Cl2N3O: 346.0514 [M+H]+, Found: 346.0668.
EXAMPLE 3 Step (c) id="p-223" id="p-223"
[00223] 2-Chloro-7-(8-chloronaphthalen-1-yl)-5,6,7,8-tetrahydropyrido[3,4-d]pyrimidin-4(3H)-one (100 mg, 0.29 mmol, 1 equiv.) was charged into a 8 mL vial followed by 2-MeTHF (1.0 mL). Reaction was stirred at 20 °C. (S)-(1-methylpyrrolidin-2-yl)methanol (41 L, 0.mmol, 1.2 equiv.) was then added. Then sodium tert-amylate (160 mg, 0.87 mmol, 5.0 equiv.) was added to the reaction mixture. Following this, the reaction was allowed to react at 60 °C until startine material area was ≤0.5 area% (ca. 16 h). The mixture was cooled to 20 °C and 1.mL of a 10% w/w of citric acid in water was added to the reaction mixture. Organic phase was discarded, and aqueous phase was washed further with 0.5 mL of 2-MeTHF. The organic phase was discarded again and 1.0 mL of fresh 2-MeTHF was added before the pH of the aqueous solution was taken to neutral (6.5 < pH < 7.5). Organic phase was kept aside while the neutral aqueous phase was back-extracted with fresh 0.5 mL of 2-MeTHF. Combined organic phases were concentrated to half before 1.0 mL of heptane was added. After removal of volatiles, the solid was dried under nitrogen flow and low vacuum at T ≤45 °C until constant mass. (S)-7-(8-chloronaphthalen-1-yl)-2-((1-methylpyrrolidin-2-yl)methoxy)-5,6,7,8-tetrahydropyrido[3,4-d]pyrimidin-4(3H)-one was obtained as a light beige solid (107 mg, 0.25 mmol, 87% yield). id="p-224" id="p-224"
[00224] M.p.: 140.9 – 141.0 °C. id="p-225" id="p-225"
[00225] H NMR (500 MHz, DMSO-d6) δ ppm 1.51 - 1.61 (m, 1H), 1.66 (br d, J = 8.Hz, 2H), 1.84 - 1.94 (m, 1H), 2.14 - 2.25 (m, 1H), 2.33 (s, 3H), 2.42 (m, 1H), 2.52 - 2.60 (m, 1 1H), 2.62 - 2.72 (m, 1H), 2.90 - 2.98 (m, 1H), 3.01 - 3.09 (m, 1H), 3.42 - 3.48 (m, 1H), 3.63 - 3.70 (m, 1H), 3.88 (d, J = 17.0 Hz, 1H), 4.16 - 4.27 (m, 2H), 7.34 (d, J = 7.1 Hz, 1H), 7.40 - 7.46 (m, 1 H), 7.51 (t, J = 7.9 Hz, 1 H), 7.57 (dd, J = 7.4, 1.4 Hz, 1 H), 7.72 (d, J = 7.7 Hz, 1H), 7.90 (dd, J = 8.2, 1.1 Hz, 1H), 12.2 (br s, 1H). id="p-226" id="p-226"
[00226] C NMR (126 MHz, DMSO-d6) δ ppm 163.6, 157.8, 156.0, 148.6, 137.6, 130.0, 129.4, 129.0, 127.3, 126.4, 125.5, 125.1, 119.2, 112.4, 69.6, 63.7, 57.5, 57.3, 50.4, 41.6, 28.4, 23.1, 22.2. id="p-227" id="p-227"
[00227] HRMS (ESI) calculated for C23H26ClN4O2: 425.1744 [M+H]+, Found: 425.1902.
EXAMPLE 4 Steps (d) and (e) id="p-228" id="p-228"
[00228] (S)-7-(8-chloronaphthalen-1-yl)-2-((1-methylpyrrolidin-2-yl)methoxy)-5,6,7,8-tetrahydropyrido[3,4-d]pyrimidin-4(3H)-one (3.0 g, 7.06 mmol, 1 equiv.), potassium phosphate tribasic (3.0 g, 14.12 mmol, 2 equiv.) and potassium phosphate dibasic (1.2 g, 7.06 mmol, equiv.) were charged into a 100 mL reactor followed by MeCN (30.0 mL). Reaction was stirred at 0 °C and bis(trifluoromethanesulfonyl)aniline (4.5 g, 12.71 mmol, 1.8 equiv.) was added slowly to the reaction mixture. Following this, the reaction was allowed to react at 0 °C until starting material area was ≤5 area% (ca. 24 h). To the same mixture was then added potassium phosphate tribasic (1.5 g, 7.06 mmol, 1 equiv.) followed by (S)-2-(piperazin-2-yl)acetonitrile dihydrochloride (g, 8.47 mmol, 1.2 equiv.). Following this, the reaction was allowed to react at °C until the triflate intermediate area was ≤0.5 area% (ca. 16 h). To the mixture was added 30.0 mL of water. Phase cut was performed and the organic phase was concentrated to dryness and then diluted with 9.0 mL of DMAc. Then 3.0 mL of water was added and mixture was 1 seeded with the final crystalline product (1% w/w). The mixture was stirred for 10 h, then 9.mL of water was slowly added over 3 h. The slurry was stirred at r.t. until the assay of the supernatant was ≤1 area%. The crystalline solid was then filtered, washed with 6.0 mL of water and the solid was then dried under nitrogen flow and low vacuum at T ≤45 °C until constant mass and KF NMT 10%. 2-((S)-4-(7-(8-chloronaphthalen-1-yl)-2-(((S)-1-methylpyrrolidin-2-yl)methoxy)-5,6,7,8-tetrahydropyrido[3,4-d]pyrimidin-4-yl)piperazin-2-yl)acetonitrile was obtained as an off-white solid (2.6 g, 4.94 mmol, 70% yield). id="p-229" id="p-229"
[00229] M.p.: 60.3 – 60.4 °C. id="p-230" id="p-230"
[00230] H NMR (400 MHz, DMSO-d6) δ ppm 1.52 - 1.73 (m, 3H), 1.84 - 1.96 (m, 1H), 2.13 (q, J = 8.7 Hz, 1H), 2.32 (d, J = 1.8 Hz, 3H), 2.44 - 2.49 (m, 1H), 2.61 - 2.83 (m, 5H), 2.- 2.98 (m, 3H), 3.07 (br s, 3H), 3.37 (br s, 2H), 3.42 - 3.51 (m, 1H), 3.72 (s, 1H), 3.85 (br d, J = 12.4 Hz, 1H) 4.01 (ddd, J = 10.5, 6.7, 3.3 Hz, 1H), 4.17 (br d, J = 17.4 Hz, 1H), 4.24 (dd, J = 10.7, 4.9 Hz, 1H) 7.31 (ddd, J = 7.6, 3.4, 0.9 Hz, 1H), 7.43 (t, J = 7.8 Hz, 1H), 7.52 (t, J = 7.Hz, 1H), 7.57 (dd, J = 7.6, 1.3 Hz, 1H), 7.72 (d, J = 8.1 Hz, 1H), 7.87 - 7.95 (m, 1H). id="p-231" id="p-231"
[00231] C NMR (101 MHz, DMSO-d6) δ ppm 21.2, 22.5, 25.6, 28.5, 41.2, 44.6, 47.6, 50.0, 51.0, 51.6, 56.9, 58.6, 63.4, 68.7, 108.2, 118.7, 118.8, 124.6, 124.9, 125.9, 126.8, 128.5, 128.8, 129.5, 137.0, 148.0, 162.1, 163.8, 165.6. id="p-232" id="p-232"
[00232] HRMS (ESI) calculated for C29H35ClN7O: 532.2592 [M+H]+, Found: 532.2706.
EXAMPLE 5 Step (f) 1 id="p-233" id="p-233"
[00233] Acetonitrile (1093.0 kg) was added into a 3000 L glass-lined reactor. Next, MR84916 (81.6 kg, 68.1 kg corrected by HPLC assay wt%, 128.0 mol, 1.0 equiv.) was added to the reactor. The mixture was concentrated at a temperature below ≤45 °C under reduced pressure (P ≤-0.06 MPa) until (204~272 L) 3-4 vol remained. Acetonitrile (268.0 kg) was then added into the mixture at a temperature below 45 °C. The mixture was concentrated at a temperature below 45 °C under reduced pressure (P ≤-0.06 MPa) until (204~272 L) 3-4 vol remained. The mixture was sampled to confirm moisture content was below 0.3% as judged by Karl-Fischer analysis (0.1%, actual). The mixture was cooled to a temperature between 10-°C (16.5 °C, actual). Acetonitrile (163.9 kg) was added into a separate 3000 L hastelloy reactor. The mixture was sampled to confirm moisture content below 0.3% (0.02%, actual). Sodium 2-fluoroacrylate (25.0 kg, 218 mol, 1.7 equiv.) was added into the hastelloy reactor under the protection of nitrogen at a temperature between 10-20 °C. It was confirmed that the sodium 2-fluoroacrylate was a finely powdered state prior to addition. The reactor wall was rinsed with acetonitrile (13.7 kg). A 50 w/w% propylphosphosphonic anhydride solution in ethyl acetate (124.7 kg, 192 mol, 1.5 equiv.) was added into the sodium 2-fluoroacrylate solution in the hastelloy reactor at a temperature between 10-20 °C under the protection of nitrogen. The mixture was stirred for not less than 2 h at a temperature between 10-20 °C. The mixture containing MR84916 in the 3000 L glass-lined reactor was slowly added into the mixture containing the 2-fluoroacrylate in the 3000 L hastelloy reactor at a temperature between 10-°C. The 3000 L glass-lined reactor containing MR84916 was rinsed with acetonitrile (18.2 kg) which was transferred into the Hastelloy reactor with the acrylate. The reaction proceeded at 10-°C (14.5-18.0 °C), and after 1 h, the mixture was sampled for HPLC purity analysis every 1-h until the area% of MR84916 / (MR84916 + MRTX849) was less than 0.4% (0.3% observed at h and 1 min). At a temperature between 10-30 °C, the mixture was adjusted to a pH of 8-9 with a potassium carbonate solution (348.3 kg) which was prepared from potassium carbonate (41.kg) and purified water (307.2 kg). The mixture continued to stir for another 0.5 h and was then pH was retested for confirmation (pH 8, actual). The mixture was adjusted to a temperature of 25-35 °C, stirring was stopped, and the layers were allowed to settle prior to separation. The aqueous phase was removed and kept. The phase was washed with a potassium phosphate tribasic solution which was prepared from potassium phosphate tribasic (50.1 kg) and purified water (204.4 kg) at a temperature of 25-35 °C. The mixture was stirred for an additional 0.5-3 h 1 and allowed to settle prior to separation at a temperature of 25-35 °C. The aqueous phase was removed and kept. The aqueous layers were combined and extracted with 2-MeTHF (175.9 kg). The mixture was stirred for an additional 20-30 min, and the layers were allowed to settle prior to separation at a temperature between 25-35 °C. The organic fractions were combined, and then the combined mixture was concentrated at a temperature ≤45oC under reduced pressure (P ≤-0.MPa) until (136~204 L) 2-3 vol remained. Isopropanol (429.2 kg) was added into the mixture at a temperature ≤45 °C. The mixture was concentrated at a temperature ≤45 °C under reduced pressure (P ≤-0.06 MPa) until (136-204 L) 2-3 vol remained. Isopropanol (320.1 kg) was added into the mixture at a temperature ≤45 °C. The mixture was circulated through a CUNO filtration system. Then isopropanol (106.9 kg) was used to rinse the CUNO filter and added into the reactor. The mixture was concentrated at a temperature of ≤45 °C under reduced pressure (P ≤-0.06 MPa) until 4.5-5.5 vol (306~374 L) remained. The mixture was sampled to confirm that residual acetonitrile residuals were less than 1.5% (0.05%, actual). The mixture was adjusted to a temperature of 33-38 °C (35.3 °C, actual). Purified water (170.0 kg) was added into the mixture at 33-38 °C. Form 2 seed crystal (0.2 kg) was added into the mixture at a temperature between 33-38 °C. The mixture was maintained at this temperature and stirred for 2-3 h. The mixture was slowly cooled to 15-20 °C. The mixture was maintained at this temperature and stirred for 6-h. Purified water (170.0 kg) was added into the reactor at a temperature between 15-20 °C. The mixture was cooled to -3 to 7 °C slowly (4.8 °C, actual). The mass was stirred at -3 to 7 °C for crystallization, and after 8 h, the mixture was sampled every 3-5 h until the mother liquor assay wt% of MRTX849 was less than 0.7% or the difference between two consecutive samples was ≤0.1wt% (0.7 wt%, observed). The mixture was filtered with a stainless-steel centrifuge. Purified water (102.6 kg) and isopropanol (16.4 kg) were added into a 3000 L hastelloy-lined reactor, and then transferred into a stainless-steel centrifuge to rinse the filter cake. The wet filter cake was swept with nitrogen for 6-8 h, dried in a rotary conical dryer at T ≤40 °C until the moisture content was not more than 1% as judged by Karl-Fischer analysis. After completion of drying, the solid was cooled to 20-30 °C. Isopropanol (368.4 kg) was added into a 1000 L glass-lined reactor, and then the stirrer was started. The solids from the filter cake were added to the 1000 L reactor, and the mixture was heated to a temperature between 55-60 °C (57.2 °C, actual). The mixture was maintained at this temperature and stirred until the solid dissolved completely as confirmed by a visual check. The mixture was then filtered into a 1000 L hastelloy reactor (Pre- 1 heated to Tjacket=55-60 °C) through a filtration system heated to 55-60 °C. The mixture was held at 55-60 °C. n-Heptane (80.5 kg) was added into the reactor, first passing through the filter for rinsing. The mixture was stirred for 0.5 h in the reactor. After the solid dissolved completely, the mixture was cooled to a temperature of 43-47 °C. A seed slurry was prepared by addition of isopropanol (5.5 kg) and n-heptane (1.3 kg) into a 20 L four-neck flask through a capsule filter, followed by addition of Form 2 seed crystals (MRTX849 Form 2, 0.8 kg) held at a temperature between 20-25 °C. The mixture was stirred until evenly mixed, and then it was recycled through a wet mill. Prior to addition of the slurry feed to the reactor, the reactor was checked to confirm full dissolution of MRTX849 and that precipitation had not occurred. After this, the Form 2 seed slurry was added into the 1000 L Hastelloy reactor at a temperature between 43-47 °C. The mixture was stirred for 3-4 h at 43-47 °C. The mixture was then cooled to a temperature of 28-°C and stirred for 4-5 h at that temperature (30.6 °C, actual). After this time, the mixture was cooled to 18-22 °C and stirred for 4-5 h (20.9 °C, actual). The mixture was then cooled to -3 to °C (3.5 °C, actual) with stirring. After 12 h, the supernatant of the mixture was sampled every 3-h to check the assay wt% of MRTX849 in the mother liquors, and to confirm when the level was not more than 1.2% or alternatively, when the difference between samples is equal to or less than 0.2%. During the crystallization, nitrogen was bubbled intermittently through the bottom port of the reactor. On checking the mother liquours, the assay wt% of MRTX849 was found to be 1.0%. The mixture was recycled through a wet mill at -3 to 10 °C, and the batch temperature can be expected to rise by 2-3 °C during this process. The solid was sampled for particle size until the D(90) was not more than 100 μm (22 µm, actual). The mixture was maintained at -3 to °C for 0.5-1 h. The mixture was then filtered with a stainless steel Nutsche filter. The reactor wall was rinsed with a mixed solvent system of n-heptane (15.9 kg) and isopropanol (74.1 kg) through a liquid material filter. Then the wet mill was rinsed with these rinsing liquors, which were transferred into the reactor and then discharged into the filter to rinse the filter cake. The above operation was repeated once more with the mixed solvent of n-heptane (15.9 kg) and isopropanol (74.2 kg). The filtration was noted to be quite slow as a result of the small particle size from wet milling. The solid in the filter was swept with nitrogen at Tjacket=20-30 °C for 8-h, and then dried at Tjacket=35-45 °C until the isopropanol residual was not more than 6300 ppm (3488 ppm, actual) and the n-heptane residual was not more than 3500 ppm (not detected, LOD 432 ppm) as measured by GC. After drying completed, the solid was cooled to a temperature 1 between 20-30 °C. The solid was sieved until the appearance of the product was uniform and without blocking. The operation area RH% should be not more than 50%. The product (MRTX849) was obtained as an off-white solid (51.1 kg, 50.0 kg corrected for assay wt%, 100.assay wt%, 64.7% yield). id="p-234" id="p-234"
[00234] M.p .: 128.3 – 128.4 °C. id="p-235" id="p-235"
[00235] H NMR (400 MHz, DMSO-d6) δ ppm 1.56 - 1.77 (m, 3H), 1.96 (br dd, J = 11.9, 7.6 Hz, 1H), 2.20 (dd, J = 8.2, 2.4 Hz, 1H), 2.37 (d, J = 3.5 Hz, 3H), 2.72 (br d, J = 1.8 Hz, 1H), 2.91 - 3.03 (m, 2H), 3.04 - 3.23 (m, 4H), 3.28 (br dd, J = 13.8, 3.7 Hz, 1H), 3.33 - 3.63 (m, 4H), 3.73 - 3.86 (m, 1H), 3.89 - 3.98 (m, 1H), 3.99 - 4.15 (m, 3H), 4.17 - 4.36 (m, 2H), 5.22 - 5.41 (m, 1H), 5.42 - 5.50 (m, 1H), 7.34 - 7.44 (m, 1H), 7.46 - 7.53 (m, 1H), 7.58 (q, J = 7.6 Hz, 1H), 7.(dt, J = 7.5, 1.1 Hz, 1H), 7.75 - 7.83 (m, 1H), 7.93 - 8.00 (m, 1H). id="p-236" id="p-236"
[00236] C NMR (101 MHz, DMSO-d6) δ ppm 22.5, 25.0, 25.3, 25.5, 26.8, 28.5, 41.2, 47.5, 50.0, 57.0, 58.4, 58.7, 63.4, 68.9, 99.5, 108.6, 118.1, 118.8, 124.7, 124.9, 125.9, 126.9, 128.5, 128.9, 129.5, 137.0, 148.0, 155.5 (d, J = 266.39 Hz), 161.0 (d, J = 11.71 Hz), 162.0, 164.3, 165.9. id="p-237" id="p-237"
[00237] F NMR (376 MHz, DMSO-d6) δ ppm -106.4. id="p-238" id="p-238"
[00238] HRMS(ESI) calculated for C32H36ClFN7O2: 604.2603 [M+H]+, Found: 604.2690.
Example 6 Optional isolation of MRTX849 as tartrate salt: id="p-239" id="p-239"
[00239] 3.5 L of ethanol was added to a reactor charged with MRTX849 (875 g) and stirred until fully dissolved. In a separate reactor 1M L-tartaric acid in THF was prepared by adding 1.59 L of THF and 0.24 kg of L-tartaric acid and heated to 35-40 °C. The above prepared tartaric acid solution was added to the ethanol reaction mixture of MRTX849 at 45-50 °C. MRTX849 free base seed (60 mg) was added 45-50 °C and precipitate formation was slowly 1 observed. The slurry was stirred at 45-50 °C for at least 1 h before being filtered, washed with cold ethanol, and dried in a vacuum over at 40 °C for 24 hours.
EXAMPLE 7 Step (a’) id="p-240" id="p-240"
[00240] Methyl 1-(8-chloronaphthalen-1-yl)-5-hydroxy-1,2,3,6-tetrahydropyridine-4-carboxylate (75 g, 236 mmol, 1.0 equiv.) was charged into a 2 L glass-lined reactor followed by thiourea (54 g, 708 mmol, 3 equiv.). Methanol (750 mL) was then added. Reaction was stirred at 20°C. Sodium methoxide (34 g, 590 mmol, 2.5 equiv.) was added in one portion to the reaction at 20°C. Following this, the reaction was allowed to react at 60 °C until starting material area was ≤1.0 area% (ca. 4 h). The mixture was then cooled to 20 °C and purified water (750 mL) was added. Mixture was filtered through a pad of celite and transferred to a clan reactor. A 2N hydrochloric acid solution was slowly added to the reaction at 15-25 °C until pH = 4-5. Heavy precipitation is observed upon addition of the hydrochloric acid solution. The solid was then filtered off and re-slurried with purified water (375 mL) before a second filtration. Solid was dried until constant mass under nitrogen flow and low vacuum at T ≤45°C. 7-(8-Chloronaphthalen-1-yl)-2-thioxo-2,3,5,6,7,8-hexahydropyrido[3,4-d]pyrimidin-4(1H)-one was obtained as a light yellow solid (77 g, 225 mmol, 95% yield). id="p-241" id="p-241"
[00241] M.p.: 237.5 – 237.6 °C (dec.). id="p-242" id="p-242"
[00242] H NMR(500 MHz, DMSO-d6) δ ppm 2.35 (br d, J = 16.4 Hz, 1H), 2.51 - 2.(m, 1H), 3.05 - 3.16 (m, 1H), 3.36 - 3.45 (m, 1H), 3.57 (br d, J = 17.0 Hz, 1H), 3.94 (d, J = 17.Hz, 1H), 7.27 - 7.36 (m, 1H), 7.39 - 7.48 (m, 1H), 7.53 (t, J = 7.9 Hz, 1H), 7.59 (dd, J = 7.4, 1.Hz, 1H), 7.74 (d, J = 7.7 Hz, 1H), 7.85 - 7.96 (m, 1H), 11.68 - 12.50 (br s, 1H). 1 id="p-243" id="p-243"
[00243] C NMR (126 MHz, DMSO-d6) δ ppm 21.6, 49.7, 53.5, 109.8, 119.7, 125.5, 126.5, 127.3, 129.1, 129.3, 130.1, 137.5, 148.3, 150.1, 161.9, 172.9, 174.9. id="p-244" id="p-244"
[00244] HRMS (ESI) calculated for C17H15ClN3OS: 344.0624 [M+H]+, Found: 344.0779.
EXAMPLE 8 Step (b’) 7-(8-chloronaphthalen-1-yl)-2-thioxo-2,3,5,6,7,8-hexahydropyrido[3,4-d]pyrimidin-4(1H)-one (10 g, 29.0 mmol, 1.0 equiv.) was charged into a 250 mL 3-necked round bottom flask. MeOH (100 mL) was then added. Sodium hydroxide 1N aqueous solution (77 mL, 77.0 mmol, 2.equiv.) was then added. Stirring continued until an homogenous solution was obtained. 2-Iodopropane (5.2 mL, 50.0 mmol, 1.7 equiv.) was then added to the solution. Following this, the reaction was allowed to react at 40 °C until starting material area was ≤3.0 area% (ca. 36 h). The reaction mixture was cooled to 5°C and 2N aqueous HCl (45 mL, 90 mmol, 3 equiv.) was slowly added. The solid formed upon addition was then collected by filtration and washed with water (100 mL). Solid was dried until constant mass affording 7-(8-chloronaphthalen-1-yl)-2-(isopropylthio)-5,6,7,8-tetrahydropyrido[3,4-d]pyrimidin-4(3H)-one as an off-white solid (9.6 g, 24.7 mmol, 85% yield). id="p-245" id="p-245"
[00245] M.p .: 225.8 – 225.9 °C. id="p-246" id="p-246"
[00246] H NMR (400 MHz, DMSO-d6) δ 12.62 (s, 1H), 7.91 (dd, J = 8.2, 1.3 Hz, 1H), 7.73 (dd, J = 8.2, 1.1 Hz, 1H), 7.58 (dd, J = 7.5, 1.3 Hz, 1H), 7.52 (t, J = 7.8 Hz, 1H), 7.44 (t, J = 7.8 Hz, 1H), 7.36 (dd, J = 7.6, 1.2 Hz, 1H), 3.96 (d, J = 17.1 Hz, 1H), 3.86 (hept, J = 6.9 Hz, 1 1H), 3.73 (dt, J = 17.1, 2.1 Hz, 1H), 3.45 (dd, J = 12.5, 5.5 Hz, 1H), 3.06 (ddd, J = 11.8, 10.0, 4.1 Hz, 1H), 2.72 (dt, J = 15.7, 7.3 Hz, 1H), 2.46 (d, J = 16.7 Hz, 1H), 1.43 – 1.25 (m, 6H). id="p-247" id="p-247"
[00247] C NMR (101 MHz, DMSO-d6) δ 162.3, 158.0, 155.3, 148.5, 137.5, 130.0, 129.4, 129.0, 127.3, 126.3, 125.4, 125.1, 119.2, 115.2, 57.4, 50.1, 36.1, 23.1, 23.0, 22.2. id="p-248" id="p-248"
[00248] HRMS (ESI) calculated for C20H21ClN3OS: 386.1094 [M+H]+, Found: 386.1092.
EXAMPLE 9 Step (c’) id="p-249" id="p-249"
[00249] 7-(8-chloronaphthalen-1-yl)-2-(isopropylthio)-5,6,7,8-tetrahydropyrido[3,4-d]pyrimidin-4(3H)-one (12 g, 31 mmol, 1.0 equiv.) was charged into a 250 mL 3-necked round bottom flask. MeOH (60 mL) was then added. The reaction mixture was cooled to 0 °C and a sodium methoxide solution (7 mL, 34 mmol, 1.1 equiv., 4.5M in MeOH) was slowly added. Then sodium tungstate (1.0 g, 3.1 mmol, 0.1 equiv.) was added to the reaction mixture followed by slow addition of hydrogen peroxide (32 mL, 310 mmol, 10 equiv., 30% in water). Following this, the reaction was allowed to react at 20 °C until starting material area was ≤1.0 area% (ca. h). To the reaction mixture was added water (120 mL) and 2-MeTHF (120 mL). The mixture was cooled to 5 °C and 20% w/v aqueous acetic acid (120 mL) was added slowly. After completion of the addition sodium carbanate was slowly added until pH = 8 (gas evolution). The aqueous phase was discarded and the organic phase was washed with brine. The organic phase was concentrated under reduced pressure and 2-MeTHF (36 mL) were added. Followed by the slow addition of heptane (120 mL) to afford after filtration and drying 7-(8-chloronaphthalen-1-yl)-2-(isopropylsulfonyl)-5,6,7,8-tetrahydropyrido[3,4-d]pyrimidin-4(3H)-one as an off-white solid (12.5 g, 28.2 mmol, 91% yield). id="p-250" id="p-250"
[00250] M.p.: 195.5 – 195.6 °C. 1 id="p-251" id="p-251"
[00251] H NMR (400 MHz, DMSO-d6) δ 13.66 (s, 1H), 7.92 (dd, J = 8.2, 1.3 Hz, 1H), 7.76 (dd, J = 8.3, 1.1 Hz, 1H), 7.61 – 7.50 (m, 2H), 7.45 (t, J = 7.8 Hz, 1H), 7.39 (dd, J = 7.6, 1.Hz, 1H), 4.19 (d, J = 17.2 Hz, 1H), 3.99 (dt, J = 17.4, 1.8 Hz, 1H), 3.90 – 3.75 (m, J = 6.8 Hz, 1H), 3.61 – 3.51 (m, 1H), 3.20 (ddd, J = 12.0, 10.1, 4.1 Hz, 1H), 2.97 (ddd, J = 16.7, 10.3, 6.Hz, 1H), 2.74 – 2.65 (m, 1H), 1.26 (d, J = 6.9 Hz, 6H). id="p-252" id="p-252"
[00252] C NMR (101 MHz, DMSO-d6) δ 168.6, 163.7, 160.4, 148.2, 137.5, 130.1, 129.3, 129.1, 127.3, 126.4, 125.4, 125.4, 119.4, 117.8, 57.5, 51.0, 49.8, 22.8, 15.1, 15.0. id="p-253" id="p-253"
[00253] HRMS (ESI) calculated for C20H21ClN3O3S: 418.0992 [M+H]+, Found: 418.0991.
EXAMPLE 10 Step (d’) id="p-254" id="p-254"
[00254] (S)-(1-methylpyrrolidin-2-yl)methanol (230 mg, 2.0 mmol, 2.0 equiv.) was charged into a 20 mL vial. THF (2.4 mL) was then added. Reaction was cooled to 0 °C. Potassium tert-butoxide (450 mg, 4 mmol, 4.0 equiv.) was then added at the same temperature. 7-(8-chloronaphthalen-1-yl)-2-(isopropylsulfonyl)-5,6,7,8-tetrahydropyrido[3,4-d]pyrimidin-4(3H)-one (418 mg, 1.0 mmol, 1.0 equiv.) dissolved in THF (2.4 mL) was slowly added at 0 °C. Following this, the reaction was allowed to react at 20 °C until starting material area was ≤1.area% (ca. 16 h). The reaction mixture was cooled to 0 °C and a 10 w/w% AcOH in THF (4 mL) was slowly added. Methanol (4 mL) was then added and the insoluble material was filtered off. The filtrate was concentrated to remove most solvent and ethyl acetate (10 mL) was added. Organic phase was washed with brine, dried over MgSO4 and filtered.Volatiles were removed and the crude product (400 mg) was stirred in n-heptane (8 mL) for 16 h at 20 °C. The solid product was filtered off to afford (S)-7-(8-chloronaphthalen-1-yl)-2-((1-methylpyrrolidin-2- 1 yl)methoxy)-5,6,7,8-tetrahydropyrido[3,4-d]pyrimidin-4(3H)-one as an off-white solid (310 mg, 0.72 mmol, 72% yield). id="p-255" id="p-255"
[00255] M.p.: 140.9 – 141.0 °C. id="p-256" id="p-256"
[00256] H NMR(500 MHz, DMSO-d6) δ ppm 1.51 - 1.61 (m, 1H), 1.66 (br d, J = 8.Hz, 2H), 1.84 - 1.94 (m, 1H), 2.14 - 2.25 (m, 1H), 2.33 (s, 3H), 2.42 (m, 1H), 2.52 - 2.60 (m, 1H), 2.62 - 2.72 (m, 1H), 2.90 - 2.98 (m, 1H), 3.01 - 3.09 (m, 1H), 3.42 - 3.48 (m, 1H), 3.63 - 3.70 (m, 1H), 3.88 (d, J = 16.97 Hz, 1H), 4.16 - 4.27 (m, 2H), 7.34 (d, J = 7.12 Hz, 1H), 7.40 - 7.46 (m, 1 H), 7.51 (t, J = 7.94 Hz, 1 H), 7.57 (dd, J = 7.39, 1.37 Hz, 1 H), 7.72 (d, J = 7.67 Hz, 1H), 7.90 (dd, J = 8.21, 1.10 Hz, 1H), 12.2 (br s, 1H). id="p-257" id="p-257"
[00257] C NMR (126 MHz, DMSO-d6) δ ppm 163.6, 157.8, 156.0, 148.6, 137.6, 130.0, 129.4, 129.0, 127.3, 126.4, 125.5, 125.1, 119.2, 112.4, 69.6, 63.7, 57.5, 57.3, 50.4, 41.6, 28.4, 23.1, 22.2. id="p-258" id="p-258"
[00258] HRMS (ESI) calculated for C23H26ClN4O2: 425.1744 [M+H]+, Found: 425.1902.
EXAMPLE 11 Step (e’) and (f’) id="p-259" id="p-259"
[00259] (S)-7-(8-chloronaphthalen-1-yl)-2-((1-methylpyrrolidin-2-yl)methoxy)-5,6,7,8-tetrahydropyrido[3,4-d]pyrimidin-4(3H)-one (3.0 g, 7.06 mmol, 1 equiv.), potassium phosphate tribasic (3.0 g, 14.12 mmol, 2 equiv.) and potassium phosphate dibasic (1.2 g, 7.06 mmol, equiv.) were charged into a 100 mL reactor followed by MeCN (30.0 mL). Reaction was stirred at 0 °C and bis(trifluoromethanesulfonyl)aniline (4.5 g, 12.71 mmol, 1.8 equiv.) was added slowly to the reaction mixture. Following this, the reaction was allowed to react at 0 °C until 1 starting material area was ≤5 area% (ca. 24 h). To the same mixture was then added potassium phosphate tribasic (1.5 g, 7.06 mmol, 1 equiv.) followed by (S)-2-(piperazin-2-yl)acetonitrile dihydrochloride (g, 8.47 mmol, 1.2 equiv.). Following this, the reaction was allowed to react at °C until the triflate intermediate area was ≤0.5 area% (ca. 16 h). To the mixture was added 30.0 mL of water. Phase cut was performed and the organic phase was concentrated to dryness and then diluted with 9.0 mL of DMAc. Then 3.0 mL of water was added and mixture was seeded with the final crystalline product (1% w/w). The mixture was stirred for 10 h, then 9.mL of water was slowly added over 3 h. The slurry was stirred at r.t. until the assay of the supernatant was ≤1 area%. The crystalline solid was then filtered, washed with 6.0 mL of water and the solid was then dried under nitrogen flow and low vacuum at T ≤45 °C until constant mass and KF NMT 10%. 2-((S)-4-(7-(8-chloronaphthalen-1-yl)-2-(((S)-1-methylpyrrolidin-2-yl)methoxy)-5,6,7,8-tetrahydropyrido[3,4-d]pyrimidin-4-yl)piperazin-2-yl)acetonitrile was obtained as an off-white solid (2.6 g, 4.94 mmol, 70% yield). id="p-260" id="p-260"
[00260] M.p.: 60.3 – 60.4 °C. id="p-261" id="p-261"
[00261] H NMR (400 MHz, DMSO-d6) δ ppm 1.52 - 1.73 (m, 3H), 1.84 - 1.96 (m, 1H), 2.13 (q, J = 8.67 Hz, 1H), 2.32 (d, J = 1.77 Hz, 3H), 2.44 - 2.49 (m, 1H), 2.61 - 2.83 (m, 5H), 2.85 - 2.98 (m, 3H), 3.07 (br s, 3H), 3.37 (br s, 2H), 3.42 - 3.51 (m, 1H), 3.72 (s, 1H), 3.85 (br d, J = 12.38 Hz, 1H) 4.01 (ddd, J = 10.48, 6.69, 3.28 Hz, 1H), 4.17 (br d, J = 17.43 Hz, 1H), 4.(dd, J = 10.74, 4.93 Hz, 1H) 7.31 (ddd, J = 7.58, 3.41, 0.88 Hz, 1H), 7.43 (t, J = 7.83 Hz, 1H), 7.52 (t, J = 7.71 Hz, 1H), 7.57 (dd, J = 7.58, 1.26 Hz, 1H), 7.72 (d, J = 8.08 Hz, 1H), 7.87 - 7.(m, 1H). id="p-262" id="p-262"
[00262] C NMR (101 MHz, DMSO-d6) δ ppm 21.2, 22.5, 25.6, 28.5, 41.2, 44.6, 47.6, 50.0, 51.0, 51.6, 56.9, 58.6, 63.4, 68.7, 108.2, 118.7, 118.8, 124.6, 124.9, 125.9, 126.8, 128.5, 128.8, 129.5, 137.0, 148.0, 162.1, 163.8, 165.6. id="p-263" id="p-263"
[00263] HRMS (ESI) calculated for C29H35ClN7O: 532.2592 [M+H]+, Found: 532.2706.
EXAMPLE 12 Step (g’) 1 id="p-264" id="p-264"
[00264] Acetonitrile (1093.0 kg) was added into a 3000 L glass-lined reactor. Next, MR84916 (81.6 kg, 68.1 kg corrected by HPLC assay wt%, 128.0 mol, 1.0 equiv.) was added to the reactor. The mixture was concentrated at a temperature below ≤45 °C under reduced pressure (P ≤-0.06 MPa) until (204~272 L) 3-4 vol remained. Acetonitrile (268.0 kg) was then added into the mixture at a temperature below 45 °C. The mixture was concentrated at a temperature below 45 °C under reduced pressure (P ≤-0.06 MPa) until (204~272 L) 3-4 vol remained. The mixture was sampled to confirm moisture content was below 0.3% as judged by Karl-Fischer analysis (0.1%, actual). The mixture was cooled to a temperature between 10-25 °C (16.5 °C, actual). Acetonitrile (163.9 kg) was added into a separate 3000 L hastelloy reactor. The mixture was sampled to confirm moisture content below 0.3% (0.02%, actual). Sodium 2-fluoroacrylate (25.0 kg, 218 mol, 1.7 equiv.) was added into the hastelloy reactor under the protection of nitrogen at a temperature between 10-20 °C. It was confirmed that the sodium 2-fluoroacrylate was a finely powdered state prior to addition. The reactor wall was rinsed with acetonitrile (13.7 kg). A 50 w/w% propylphosphosphonic anhydride solution in ethyl acetate (124.7 kg, 192 mol, 1.5 equiv.) was added into the sodium 2-fluoroacrylate solution in the hastelloy reactor at a temperature between 10-20 °C under the protection of nitrogen. The mixture was stirred for not less than 2 h at a temperature between 10-20 °C. The mixture containing MR84916 in the 3000 L glass-lined reactor was slowly added into the mixture containing the 2-fluoroacrylate in the 3000 L hastelloy reactor at a temperature between 10-°C. The 3000 L glass-lined reactor containing MR84916 was rinsed with acetonitrile (18.2 kg) which was transferred into the Hastelloy reactor with the acrylate. The reaction proceeded at 10-°C (14.5-18.0 °C), and after 1 h, the mixture was sampled for HPLC purity analysis every 1-h until the area% of MR84916 / (MR84916 + MRTX849) was less than 0.4% (0.3% observed at h and 1 min). At a temperature between 10-30 °C, the mixture was adjusted to a pH of 8-9 with a potassium carbonate solution (348.3 kg) which was prepared from potassium carbonate (41.kg) and purified water (307.2 kg). The mixture continued to stir for another 0.5 h and was then 1 pH was retested for confirmation (pH 8, actual). The mixture was adjusted to a temperature of 25-35 °C, stirring was stopped, and the layers were allowed to settle prior to separation. The aqueous phase was removed and kept. The phase was washed with a potassium phosphate tribasic solution which was prepared from potassium phosphate tribasic (50.1 kg) and purified water (204.4 kg) at a temperature of 25-35 °C. The mixture was stirred for an additional 0.5-3 h and allowed to settle prior to separation at a temperature of 25-35 °C. The aqueous phase was removed and kept. The aqueous layers were combined and extracted with 2-MeTHF (175.9 kg). The mixture was stirred for an additional 20-30 min, and the layers were allowed to settle prior to separation at a temperature between 25-35 °C. The organic fractions were combined, and then the combined mixture was concentrated at a temperature ≤45oC under reduced pressure (P ≤-0.MPa) until (136~204 L) 2-3 vol remained. Isopropanol (429.2 kg) was added into the mixture at a temperature ≤45 °C. The mixture was concentrated at a temperature ≤45 °C under reduced pressure (P ≤-0.06 MPa) until (136-204 L) 2-3 vol remained. Isopropanol (320.1 kg) was added into the mixture at a temperature ≤45 °C. The mixture was circulated through a CUNO filtration system. Then isopropanol (106.9 kg) was used to rinse the CUNO filter and added into the reactor. The mixture was concentrated at a temperature of ≤45 °C under reduced pressure (P ≤-0.06 MPa) until 4.5-5.5 vol (306~374 L) remained. The mixture was sampled to confirm that residual acetonitrile residuals were less than 1.5% (0.05%, actual). The mixture was adjusted to a temperature of 33-38 °C (35.3 °C, actual). Purified water (170.0 kg) was added into the mixture at 33-38 °C. Form 2 seed crystal (0.2 kg) was added into the mixture at a temperature between 33-38 °C. The mixture was maintained at this temperature and stirred for 2-3 h. The mixture was slowly cooled to 15-20 °C. The mixture was maintained at this temperature and stirred for 6-h. Purified water (170.0 kg) was added into the reactor at a temperature between 15-20 °C. The mixture was cooled to -3 to 7 °C slowly (4.8 °C, actual). The mass was stirred at -3 to 7 °C for crystallization, and after 8 h, the mixture was sampled every 3-5 h until the mother liquor assay wt% of MRTX849 was less than 0.7% or the difference between two consecutive samples was ≤0.1wt% (0.7 wt%, observed). The mixture was filtered with a stainless-steel centrifuge. Purified water (102.6 kg) and isopropanol (16.4 kg) were added into a 3000 L hastelloy-lined reactor, and then transferred into a stainless-steel centrifuge to rinse the filter cake. The wet filter cake was swept with nitrogen for 6-8 h, dried in a rotary conical dryer at T ≤40 °C until the moisture content was not more than 1% as judged by Karl-Fischer analysis. After completion of drying, 1 the solid was cooled to 20-30 °C. Isopropanol (368.4 kg) was added into a 1000 L glass-lined reactor, and then the stirrer was started. The solids from the filter cake were added to the 1000 L reactor, and the mixture was heated to a temperature between 55-60 °C (57.2 °C, actual). The mixture was maintained at this temperature and stirred until the solid dissolved completely as confirmed by a visual check. The mixture was then filtered into a 1000 L hastelloy reactor (Pre-heated to Tjacket=55-60 °C) through a filtration system heated to 55-60 °C. The mixture was held at 55-60 °C. n-Heptane (80.5 kg) was added into the reactor, first passing through the filter for rinsing. The mixture was stirred for 0.5 h in the reactor. After the solid dissolved completely, the mixture was cooled to a temperature of 43-47 °C. A seed slurry was prepared by addition of isopropanol (5.5 kg) and n-heptane (1.3 kg) into a 20 L four-neck flask through a capsule filter, followed by addition of Form 2 seed crystals (MRTX849 Form 2, 0.8kg) held at a temperature between 20-25 °C. The mixture was stirred until evenly mixed, and then it was recycled through a wet mill. Prior to addition of the slurry feed to the reactor, the reactor was checked to confirm full dissolution of MRTX849 and that precipitation had not occurred. After this, the Form 2 seed slurry was added into the 1000 L Hastelloy reactor at a temperature between 43-47 °C. The mixture was stirred for 3-4 h at 43-47 °C. The mixture was then cooled to a temperature of 28-°C and stirred for 4-5 h at that temperature (30.6 °C, actual). After this time, the mixture was cooled to 18-22 °C and stirred for 4-5 h (20.9 °C, actual). The mixture was then cooled to -3 to °C (3.5 °C, actual) with stirring. After 12 h, the supernatant of the mixture was sampled every 3-h to check the assay wt% of MRTX849 in the mother liquors, and to confirm when the level was not more than 1.2% or alternatively, when the difference between samples is equal to or less than 0.2%. During the crystallization, nitrogen was bubbled intermittently through the bottom port of the reactor. On checking the mother liquors, the assay wt% of MRTX849 was found to be 1.0%. The mixture was recycled through a wet mill at -3 to 10 °C, and the batch temperature can be expected to rise by 2-3 °C during this process. The solid was sampled for particle size until the D(90) was not more than 100 μm (22 µm, actual). The mixture was maintained at -3 to 7 °C for 0.5-1 h. The mixture was then filtered with a stainless steel Nutsche filter. The reactor wall was rinsed with a mixed solvent system of n-heptane (15.9 kg) and isopropanol (74.1 kg) through a liquid material filter. Then the wet mill was rinsed with these rinsing liquors, which were transferred into the reactor and then discharged into the filter to rinse the filter cake. The above operation was repeated once more with the mixed solvent of n-heptane (15.9 kg) and 1 isopropanol (74.2 kg). The filtration was noted to be quite slow as a result of the small particle size from wet milling. The solid in the filter was swept with nitrogen at Tjacket=20-30 °C for 8-h, and then dried at Tjacket=35-45 °C until the isopropanol residual was not more than 6300 ppm (3488 ppm, actual) and the n-heptane residual was not more than 3500 ppm (not detected, LOD 432 ppm) as measured by GC. After drying completed, the solid was cooled to a temperature between 20-30 °C. The solid was sieved until the appearance of the product was uniform and without blocking. The operation area RH% should be not more than 50%. The product (MRTX849) was obtained as an off-white solid (51.1 kg, 50.0 kg corrected for assay wt%, 100.assay wt%, 64.7% yield). id="p-265" id="p-265"
[00265] M.p.: 128.3 – 128.4 °C. id="p-266" id="p-266"
[00266] H NMR (400 MHz, DMSO-d6) δ ppm 1.56 - 1.77 (m, 3H), 1.96 (br dd, J = 11.87, 7.58 Hz, 1H), 2.20 (dd, J = 8.21, 2.40 Hz, 1H), 2.37 (d, J = 3.54 Hz, 3H), 2.72 (br d, J = 1.77 Hz, 1H), 2.91 - 3.03 (m, 2H), 3.04 - 3.23 (m, 4H), 3.28 (br dd, J = 13.77, 3.66 Hz, 1H), 3.- 3.63 (m, 4H), 3.73 - 3.86 (m, 1H), 3.89 - 3.98 (m, 1H), 3.99 - 4.15 (m, 3H), 4.17 - 4.36 (m, 2H), 5.22 - 5.41 (m, 1H), 5.42 - 5.50 (m, 1H), 7.34 - 7.44 (m, 1H), 7.46 - 7.53 (m, 1H), 7.58 (q, J = 7.58 Hz, 1H), 7.63 (dt, J = 7.45, 1.07 Hz, 1H), 7.75 - 7.83 (m, 1H), 7.93 - 8.00 (m, 1H). id="p-267" id="p-267"
[00267] C NMR (101 MHz, DMSO-d6) δ ppm 22.5, 25.0, 25.3, 25.5, 26.8, 28.5, 41.2, 47.5, 50.0, 57.0, 58.4, 58.7, 63.4, 68.9, 99.5, 108.6, 118.1, 118.8, 124.7, 124.9, 125.9, 126.9, 128.5, 128.9, 129.5, 137.0, 148.0, 155.5 (d, J = 266.39 Hz), 161.0 (d, J = 11.71 Hz), 162.0, 164.3, 165.9. id="p-268" id="p-268"
[00268] F NMR (376 MHz, DMSO-d6) δ ppm -106.4. id="p-269" id="p-269"
[00269] HRMS (ESI) calculated for C32H36ClFN7O2: 604.2603 [M+H]+, Found: 604.2690.
Optional isolation of MRTX849 as tartrate salt: id="p-270" id="p-270"
[00270] 3.5 L of ethanol was added to a reactor charged with MRTX849 (875 g) and stirred until fully dissolved. In a separate reactor 1M L-tartaric acid in THF was prepared by adding 1.59 L of THF and 0.24 kg of L-tartaric acid and heated to 35-40 °C. The above prepared tartaric acid solution was added to the ethanol reaction mixture of MRTX849 at 45-50 °C. 1 MRTX849 free base seed (60 mg) was added 45-50 °C and precipitate formation was slowly observed. The slurry was stirred at 45-50 °C for at least 1 h before being filtered, washed with cold ethanol, and dried in a vacuum over at 40 °C for 24 hours. id="p-271" id="p-271"
[00271] While the invention has been described in connection with specific embodiments thereof, it will be understood that it is capable of further modifications and this application is intended to cover any variations, uses, or adaptations of the invention following, in general, the principles of the invention and including such departures from the present disclosure as come within known or customary practice within the art to which the invention pertains and as may be applied to the essential features hereinbefore set forth, and as follows in the scope of the appended claims.

Claims (48)

1 CLAIMS
1. A method of synthesizing adagrasib, comprising the step of: a) reacting a compound of the following structure: with a compound of the following structure: in the presence of a base and a polar solvent to produce a final compound of step (a) with the following structure: . methyltetrahydrofuran (2-MeTHF), acetonitrile (MeCN), dimethyl sulfoxide (DMSO), N-methylpyrrolidone (NMP), and an alcohol with a formula R-OH, wherein R is alkyl, allyl or aryl.
2. The method of claim 1, further comprising step (b): b) reacting the final compound of step (a) with a derivative of phosgene in the presence of an acid and a polar aprotic solvent to produce a final compound of step (b) with the following structure: 1 .
3. The method of claim 2, further comprising step (c): c) reacting the final compound of step (b) with in the presence of a base and a polar aprotic solvent to produce a final compound of step (c) with the following structure: .
4. The method of claim 3, further comprising step (d): d) reacting the final product of step (c) with an activating agent in the presence of an additive, a polar aprotic solvent and a base to produce a final compound of step (d) with the following structure: , wherein LG is a leaving group. 1
5. The method of claim 4, further comprising step (e): e) reacting the final compound of step (d) with a base in the presence of (S)-2-(piperazin-2-yl)acetonitrile or its inorganic or organic salt, and one or more of a polar aprotic solvent to produce a final compound of step (e) with the following structure: .
6. The method of claim 5, further comprising step (f): f) reacting the final compound of step (e) with 2-fluoroacrylic acid (or corresponding alkali or metal salts) and a coupling agent in the presence of a solvent and, optionally, a base to produce adagrasib.
7. A method of synthesizing adagrasib, comprising -reacting with 2-fluoroacrylic acid (or corresponding alkali or metal salts) and a coupling agent in the presence of a solvent and, optionally, a base to produce adagrasib. 1
8. A method of synthesizing adagrasib, comprising the steps of: - reacting with a base in the presence of (S)-2-(piperazin-2-yl)acetonitrile or its inorganic or organic salt, and one or more of a polar aprotic solvent to produce: ; and - reacting with 2-fluoroacrylic acid (or corresponding alkali or metal salts) and a coupling agent in the presence of a solvent and, optionally, a base to produce adagrasib. 1
9. A method of synthesizing adagrasib, comprising the steps of: -reacting with an activating agent in the presence of an additive, a polar aprotic solvent and a base to produce: , wherein LG is a leaving group; - reacting with a base in the presence of (S)-2-(piperazin-2-yl)acetonitrile or its inorganic or organic salt, and one or more of a polar aprotic solvent to produce: 1 ; and - reacting with 2-fluoroacrylic acid (or corresponding alkali or metal salts) and a coupling agent in the presence of a solvent and, optionally, a base to produce adagrasib.
10. A method of synthesizing adagrasib, comprising the steps of: -reacting with in the presence of a base and a polar aprotic solvent to produce: 1 ; -reacting with an activating agent in the presence of an additive, a polar aprotic solvent and a base to produce: , wherein LG is a leaving group; - reacting with a base in the presence of (S)-2-(piperazin-2-yl)acetonitrile or its inorganic or organic salt, and one or more of a polar aprotic solvent to produce: 1 ; and - reacting with 2-fluoroacrylic acid (or corresponding alkali or metal salts) and a coupling agent in the presence of a solvent and, optionally, a base to produce adagrasib.
11. A method of synthesizing adagrasib, comprising the steps of: -reacting with a derivative of phosgene in the presence of an acid and a polar solvent to produce: 1 ; -reacting with in the presence of a base and a polar aprotic solvent to produce: ; -reacting with an activating agent in the presence of an additive, a polar aprotic solvent and a base to produce: 1 , wherein LG is a leaving group; - reacting with a base in the presence of (S)-2-(piperazin-2-yl)acetonitrile or its inorganic or organic salt, and one or more of a polar aprotic solvent to produce: ; and 1 - reacting with 2-fluoroacrylic acid (or corresponding alkali or metal salts) and a coupling agent in the presence of a solvent and, optionally, a base to produce adagrasib.
12. A method of synthesizing adagrasib, comprising the steps of: -reacting with in the presence of a base and a polar solvent to produce: ; 1 -reacting with a derivative of phosgene in the presence of an acid and a polar solvent to produce: ; -reacting with in the presence of an alkali salt of an alkoxide and a polar aprotic solvent to produce: ; 1 -reacting with an activating agent in the presence of an additive, a polar aprotic solvent and a base to produce: , wherein LG is a leaving group; - reacting with a base in the presence of (S)-2-(piperazin-2-yl)acetonitrile or its inorganic or organic salt, and one or more of a polar aprotic solvent to produce: 1 ; and - reacting with 2-fluoroacrylic acid (or corresponding alkali or metal salts) and a coupling agent in the presence of a solvent and, optionally, a base to produce adagrasib.
13. A method of synthesizing adagrasib, comprising the step of: a’) reacting a compound of the following structure: with a compound of the following structure: 1 in the presence of a base and a polar solvent to produce a final compound of step (a’) with the following structure: .
14. The method of claim 13, wherein the base is an inorganic base.
15. The method of claim 13, wherein the polar solvent is selected from the group consisting of DMAc, DMF, 1,4-dioxane, THF, 2-MeTHF, MeCN, DMSO, NMP, and an alcohol with a formula R-OH, wherein R is alkyl, allyl or aryl.
16. The method of claim 13, further comprising step (b’): b’) reacting the final compound of step (a’) with an alkylating or arylating agent with a base in the presence of a polar solvent to produce a final compound of step (b’) with the following structure: , wherein R is methyl, ethyl, isopropyl, or benzyl.
17. The method of claim 16, wherein the alkylating or arylating agent is selected from the group consisting of aryl ahlides or alkyl halides R-X (where R is methyl, ethyl, isopropyl, or benzyl and X is Cl, Br, I, alkyl sulfonate, aryl sulfonate, triflate or nonaflate), di-alkyl sulfate and carbonate. 1
18. The method of claim 16, wherein the polar solvent is selected from the group consisting of DMAc, DMF, 1,4-dioxane, THF, 2-MeTHF, MeCN, DMSO, NMP, and an alcohol with a formula R-OH, wherein R is alkyl, allyl or aryl.
19. The method of claim 16, wherein the base is an inorganic base.
20. The method of claim 16, further comprising step (c’): c’) reacting the final compound of step (b’) with an oxidizing agent in the presence of a polar aprotic solvent, and, optionally, a catalyst and a base, to produce a final compound of step (c’) with the following structure: .
21. The method of claim 20, wherein the oxidizing agent is selected from the group consisting of peracid, oxone, bleach, hydrogen peroxide and urea hydrogen peroxide.
22. The method of claim 20, wherein the catalyst is selected from the group consisting of sodium tungstate, phenylphosphonic acid, and methyltrioctylammonium hydrogensulfate.
23. The method of claim 20, wherein the polar aprotic solvent is selected from the group consisting of DMAc, DMF, 1,4-dioxane, THF, 2-MeTHF, MeCN, DMSO, 2-propanol and NMP.
24. The method of claim 20, wherein the base is an inorganic base.
25. The method of claim 20, further comprising step (d’): 1 d’) reacting the final product of step (c’) with (S)-(1-methylpyrrolidin-2-yl)methanol in the presence of a base and a polar aprotic solvent to produce a final compound of step (d’) with the following structure: .
26. The method of claim 25, wherein the base is an alkoxide selected from the group consisting of iso-propoxide, tert-butoxide and tert-amylate, or ammonium or alkali salts thereof.
27. The method of claim 25, wherein the polar aprotic solvent is selected from the group consisting of DMAc, DMF, 1,4-dioxane, THF, 2-MeTHF, MeCN, DMSO, and NMP.
28. The method of claim 25, further comprising step (e’): e’) reacting the final product of step (d’) with an activating agent in the presence of a base, an additive and a polar aprotic solvent to produce a final compound of step (e’) with the following structure: , wherein LG is a leaving group.
29. The method of claim 28, wherein the activating agent is selected from the group consisting of sulfonyl halide R-SO2X (where R is tolyl, mesityl, nosyl, methyl, ethyl, or propyl and X is F, Cl or Br), anhydride (trifluoromethanesulfonic anhydride and 1 nonafluorobutanesulfonic anhydride) and organic triflate reagent R-N-Tf2 (where R is phenyl, 5-chloro-2-pyridine, or 2-pyridine).
30. The method of claim 28, wherein the base is an inorganic base.
31. The method of claim 28, wherein the polar aprotic solvent is selected from the group consisting of DMAc, DMF, 1,4-dioxane, THF, 2-MeTHF, MeCN, DMSO, and NMP.
32. The method of claim 28, further comprising step (f’): f’) reacting the final product of step (e’) with a base, (S)-2-(piperazin-2-yl)acetonitrile or its inorganic or organic salt and a polar aprotic solvent to produce a final compound of step (f’) with the following structure: .
33. The method of claim 32, wherein the base is an organic base.
34. The method of claim 32, wherein the base is an inorganic base.
35. The method of claim 32, wherein the polar aprotic solvent is selected from the group consisting of DMAc, DMF, 1,4-dioxane, THF, 2-MeTHF, MeCN, DMSO, and NMP.
36. The method of claim 32, further comprising step (g’): g’) reacting the final compound of step (f’) with sodium 2-fluoroacrylic acid (or corresponding alkali or metal salts) and a coupling agent in the presence of a solvent and, optionally, a base to produce adagrasib. 1
37. The method of claim 36, wherein the coupling agent is selected from the group consisting of propylphosphonic anhydride (T3P®), carbonyldiimidazole (CDI), the carbodiimide (e.g. dicyclohexylcarbodiimide (DCC), diisopropylcarbodiimide (DIC), ethyl-( N ’,N’-dimethylamino)propylcarbodiimide hydrochloride (EDC.HCl)), the phosphonium ((benzotriazol-1-yloxy)tris(dimethylamino)phosphonium hexafluorophosphate (BOP), (benzotriazol-1-yloxy)tripyrrolidinophosphonium hexafluorophosphate (PyBOP)) and uronium (O-(benzotriazol-1-yl)- N ,N ,N ’,N’-tetramethyluronium hexafluorophosphate (HBTU), O-(7-azabenzotriazol-1-yl)-N ,N ,N ’,N’-tetramethyluronium hexafluorophosphate (HATU)).
38. The method of claim 36, wherein the solvent is selected from the group consisting of DMAc, DMF, 1,4-dioxane, THF, 2-MeTHF, MeCN, DMSO, DCM, EtOAc, IPAc, and NMP.
39. The method of claim 36, wherein the base is an organic base.
40. The method of claim 36, wherein the base is an inorganic base.
41. A method of synthesizing adagrasib comprising reacting with 2-fluoroacrylic acid (or corresponding alkali or metal salts) and a coupling agent in the presence of a solvent and, optionally, a base to produce adagrasib.
42. A method of synthesizing adagrasib comprising the steps of: 1 -reacting , wherein LG is a leaving group, with a base, (S)-2-(piperazin-2-yl)acetonitrile or its inorganic or organic salt, and a polar aprotic solvent to produce: ; -reacting with 2-fluoroacrylic acid (or corresponding alkali or metal salts) and a coupling agent in the presence of a solvent and, optionally, a base to produce adagrasib.
43. A method of synthesizing adagrasib comprising the steps of: 1 -reacting with an activating agent in the presence of a base, an additive and a polar aprotic solvent to produce: , wherein LG is a leaving group; -reacting with a base, (S)-2-(piperazin-2-yl)acetonitrile or its inorganic or organic salt, and a polar aprotic solvent to produce: ; 1 -reacting with 2-fluoroacrylic acid (or corresponding alkali or metal salts) and a coupling agent in the presence of a solvent and, optionally, a base to produce adagrasib.
44. A method of synthesizing adagrasib comprising the steps of: -reacting , wherein R is methyl, ethyl, isopropyl, or benzyl, with (S)-(1-methylpyrrolidin-2-yl)methanol in the presence of a base and a polar aprotic solvent to produce: ; 1 -reacting with an activating agent in the presence of a base, an additive and a polar aprotic solvent to produce: , wherein LG is a leaving group; -reacting with a base, (S)-2-(piperazin-2-yl)acetonitrile or its inorganic or organic salt, and a polar aprotic solvent to produce: 1 ; -reacting with 2-fluoroacrylic acid (or corresponding alkali or metal salts) and a coupling agent in the presence of a solvent and, optionally, a base to produce adagrasib.
45. A method of synthesizing adagrasib comprising the steps of: -reacting , wherein R is methyl, ethyl, isopropyl, or benzyl, with an oxidizing agent in the presence of a polar aprotic solvent to produce: 1 ; -reacting with (S)-(1-methylpyrrolidin-2-yl)methanol in the presence of a base and a polar aprotic solvent to produce: ; -reacting with an activating agent in the presence of a base, an additive and a polar aprotic solvent to produce: 1 , wherein LG is a leaving group; -reacting with a base, (S)-2-(piperazin-2-yl)acetonitrile or its inorganic or organic salt, and a polar aprotic solvent to produce: ; 1 -reacting with 2-fluoroacrylic acid (or corresponding alkali or metal salts) and a coupling agent in the presence of a solvent and, optionally, a base to produce adagrasib.
46. A method of synthesizing adagrasib comprising the steps of: -reacting with an alkylating or arylating agent with a base in the presence of a polar solvent to produce: , wherein R is methyl, ethyl, isopropyl, or benzyl; 1 -reacting with an oxidizing agent in the presence of a polar aprotic solvent to produce: ; -reacting with (S)-(1-methylpyrrolidin-2-yl)methanol in the presence of a base and a polar aprotic solvent to produce: ; 1 -reacting with an activating agent in the presence of a base, an additive and a polar aprotic solvent to produce: wherein LG is a leaving group; -reacting with a base, (S)-2-(piperazin-2-yl)acetonitrile or its inorganic or organic salt, and a polar aprotic solvent to produce: ; 1 -reacting with 2-fluoroacrylic acid (or corresponding alkali or metal salts) and a coupling agent in the presence of a solvent and, optionally, a base to produce adagrasib.
47. A method of synthesizing adagrasib comprising the steps of: -reacting with in the presence of a base and a polar solvent to produce: ; 1 -reacting with an alkylating or arylating agent with a base in the presence of a polar solvent to produce: , wherein R is methyl, ethyl, isopropyl, or benzyl; -reacting with an oxidizing agent in the presence of a polar aprotic solvent to produce: ; 1 -reacting with (S)-(1-methylpyrrolidin-2-yl)methanol in the presence of a base and a polar aprotic solvent to produce: ; -reacting with an activating agent in the presence of a base, an additive and a polar aprotic solvent to produce: , wherein LG is a leaving group; 1 -reacting with a base, (S)-2-(piperazin-2-yl)acetonitrile or its inorganic or organic salt, and a polar aprotic solvent to produce: ; -reacting with 2-fluoroacrylic acid (or corresponding alkali or metal salts) and a coupling agent in the presence of a solvent and, optionally, a base to produce adagrasib.
48. A compound selected from the group consisting of: 1 ; ; ; ; 1 ;; ; and .
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