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EP2247741A4 - Paired-end reads in sequencing by synthesis - Google Patents

Paired-end reads in sequencing by synthesis

Info

Publication number
EP2247741A4
EP2247741A4 EP09706204A EP09706204A EP2247741A4 EP 2247741 A4 EP2247741 A4 EP 2247741A4 EP 09706204 A EP09706204 A EP 09706204A EP 09706204 A EP09706204 A EP 09706204A EP 2247741 A4 EP2247741 A4 EP 2247741A4
Authority
EP
European Patent Office
Prior art keywords
paired
sequencing
synthesis
end reads
reads
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Withdrawn
Application number
EP09706204A
Other languages
German (de)
French (fr)
Other versions
EP2247741A2 (en
Inventor
Timothy Harris
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
Helicos BioSciences Corp
Original Assignee
Helicos BioSciences Corp
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Priority claimed from US12/025,033 external-priority patent/US7767400B2/en
Application filed by Helicos BioSciences Corp filed Critical Helicos BioSciences Corp
Publication of EP2247741A2 publication Critical patent/EP2247741A2/en
Publication of EP2247741A4 publication Critical patent/EP2247741A4/en
Withdrawn legal-status Critical Current

Links

Classifications

    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6869—Methods for sequencing

Landscapes

  • Life Sciences & Earth Sciences (AREA)
  • Chemical & Material Sciences (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Organic Chemistry (AREA)
  • Zoology (AREA)
  • Wood Science & Technology (AREA)
  • Health & Medical Sciences (AREA)
  • Engineering & Computer Science (AREA)
  • Microbiology (AREA)
  • Immunology (AREA)
  • Biotechnology (AREA)
  • Molecular Biology (AREA)
  • Biophysics (AREA)
  • Analytical Chemistry (AREA)
  • Physics & Mathematics (AREA)
  • Biochemistry (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • General Engineering & Computer Science (AREA)
  • General Health & Medical Sciences (AREA)
  • Genetics & Genomics (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
EP09706204A 2008-02-03 2009-02-03 Paired-end reads in sequencing by synthesis Withdrawn EP2247741A4 (en)

Applications Claiming Priority (4)

Application Number Priority Date Filing Date Title
US12/025,033 US7767400B2 (en) 2008-02-03 2008-02-03 Paired-end reads in sequencing by synthesis
US4739708P 2008-04-23 2008-04-23
US9891008P 2008-09-22 2008-09-22
PCT/US2009/032970 WO2009097626A2 (en) 2008-02-03 2009-02-03 Paired-end reads in sequencing by synthesis

Publications (2)

Publication Number Publication Date
EP2247741A2 EP2247741A2 (en) 2010-11-10
EP2247741A4 true EP2247741A4 (en) 2011-02-23

Family

ID=40913521

Family Applications (1)

Application Number Title Priority Date Filing Date
EP09706204A Withdrawn EP2247741A4 (en) 2008-02-03 2009-02-03 Paired-end reads in sequencing by synthesis

Country Status (2)

Country Link
EP (1) EP2247741A4 (en)
WO (1) WO2009097626A2 (en)

Families Citing this family (14)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
EP1354064A2 (en) 2000-12-01 2003-10-22 Visigen Biotechnologies, Inc. Enzymatic nucleic acid synthesis: compositions and methods for altering monomer incorporation fidelity
GB0514935D0 (en) 2005-07-20 2005-08-24 Solexa Ltd Methods for sequencing a polynucleotide template
EP2427572B1 (en) * 2009-05-01 2013-08-28 Illumina, Inc. Sequencing methods
US10036063B2 (en) 2009-07-24 2018-07-31 Illumina, Inc. Method for sequencing a polynucleotide template
US10174368B2 (en) 2009-09-10 2019-01-08 Centrillion Technology Holdings Corporation Methods and systems for sequencing long nucleic acids
US10072287B2 (en) 2009-09-10 2018-09-11 Centrillion Technology Holdings Corporation Methods of targeted sequencing
US8753816B2 (en) * 2010-10-26 2014-06-17 Illumina, Inc. Sequencing methods
US20120252682A1 (en) * 2011-04-01 2012-10-04 Maples Corporate Services Limited Methods and systems for sequencing nucleic acids
MX2015006219A (en) 2012-11-19 2015-11-13 Apton Biosystems Inc Digital analysis of molecular analytes using single molecule detection.
US10829816B2 (en) 2012-11-19 2020-11-10 Apton Biosystems, Inc. Methods of analyte detection
CN105112516A (en) * 2015-08-14 2015-12-02 深圳市瀚海基因生物科技有限公司 Single-molecule targeted sequencing method, device and system and application
JP7305611B2 (en) * 2017-03-17 2023-07-10 アプトン バイオシステムズ インコーポレイテッド Methods of sequencing and high-resolution imaging
EP3853382A4 (en) * 2018-09-19 2022-06-22 Apton Biosystems, Inc. TIGHTLY PACKED ANALYTICAL LAYERS AND DETECTION METHODS
EP4081653B1 (en) 2019-12-23 2024-07-03 Singular Genomics Systems, Inc. Methods for long read sequencing

Family Cites Families (6)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US7432048B2 (en) * 1996-11-29 2008-10-07 Third Wave Technologies, Inc. Reactions on a solid surface
US6951722B2 (en) * 1999-03-19 2005-10-04 Takara Bio Inc. Method for amplifying nucleic acid sequence
WO2001098537A2 (en) * 2000-06-17 2001-12-27 Third Wave Technologies, Inc. Nucleic acid accessible hybridization sites
US20030182068A1 (en) * 2001-10-30 2003-09-25 Battersby Bronwyn J. Device and methods for directed synthesis of chemical libraries
US7575865B2 (en) * 2003-01-29 2009-08-18 454 Life Sciences Corporation Methods of amplifying and sequencing nucleic acids
EP1907591A2 (en) * 2005-07-28 2008-04-09 Helicos Biosciences Corporation Consecutive base single molecule sequencing

Non-Patent Citations (1)

* Cited by examiner, † Cited by third party
Title
ZAJAC ET AL: "Expression profiling of signature gene sets with trinucleotide threading", GENOMICS, ACADEMIC PRESS, SAN DIEGO, US, vol. 91, no. 2, 3 December 2007 (2007-12-03), pages 209 - 217, XP022426734, ISSN: 0888-7543, DOI: 10.1016/J.YGENO.2007.10.012 *

Also Published As

Publication number Publication date
WO2009097626A2 (en) 2009-08-06
EP2247741A2 (en) 2010-11-10
WO2009097626A3 (en) 2009-09-24

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Legal Events

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Ipc: C12Q 1/68 20060101ALI20110117BHEP

Ipc: C12P 19/34 20060101AFI20100903BHEP

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