EP1190236A1 - Sensor platform and method for analysing multiple analytes - Google Patents
Sensor platform and method for analysing multiple analytesInfo
- Publication number
- EP1190236A1 EP1190236A1 EP00940279A EP00940279A EP1190236A1 EP 1190236 A1 EP1190236 A1 EP 1190236A1 EP 00940279 A EP00940279 A EP 00940279A EP 00940279 A EP00940279 A EP 00940279A EP 1190236 A1 EP1190236 A1 EP 1190236A1
- Authority
- EP
- European Patent Office
- Prior art keywords
- light
- areas
- measuring
- optically transparent
- excitation
- Prior art date
- Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
- Ceased
Links
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Classifications
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- G—PHYSICS
- G01—MEASURING; TESTING
- G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
- G01N21/00—Investigating or analysing materials by the use of optical means, i.e. using sub-millimetre waves, infrared, visible or ultraviolet light
- G01N21/62—Systems in which the material investigated is excited whereby it emits light or causes a change in wavelength of the incident light
- G01N21/63—Systems in which the material investigated is excited whereby it emits light or causes a change in wavelength of the incident light optically excited
- G01N21/64—Fluorescence; Phosphorescence
- G01N21/645—Specially adapted constructive features of fluorimeters
- G01N21/648—Specially adapted constructive features of fluorimeters using evanescent coupling or surface plasmon coupling for the excitation of fluorescence
-
- G—PHYSICS
- G01—MEASURING; TESTING
- G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
- G01N21/00—Investigating or analysing materials by the use of optical means, i.e. using sub-millimetre waves, infrared, visible or ultraviolet light
- G01N21/17—Systems in which incident light is modified in accordance with the properties of the material investigated
- G01N21/55—Specular reflectivity
- G01N21/552—Attenuated total reflection
-
- G—PHYSICS
- G01—MEASURING; TESTING
- G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
- G01N21/00—Investigating or analysing materials by the use of optical means, i.e. using sub-millimetre waves, infrared, visible or ultraviolet light
- G01N21/75—Systems in which material is subjected to a chemical reaction, the progress or the result of the reaction being investigated
- G01N21/77—Systems in which material is subjected to a chemical reaction, the progress or the result of the reaction being investigated by observing the effect on a chemical indicator
- G01N21/7703—Systems in which material is subjected to a chemical reaction, the progress or the result of the reaction being investigated by observing the effect on a chemical indicator using reagent-clad optical fibres or optical waveguides
-
- G—PHYSICS
- G01—MEASURING; TESTING
- G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
- G01N21/00—Investigating or analysing materials by the use of optical means, i.e. using sub-millimetre waves, infrared, visible or ultraviolet light
- G01N21/75—Systems in which material is subjected to a chemical reaction, the progress or the result of the reaction being investigated
- G01N21/77—Systems in which material is subjected to a chemical reaction, the progress or the result of the reaction being investigated by observing the effect on a chemical indicator
- G01N21/7703—Systems in which material is subjected to a chemical reaction, the progress or the result of the reaction being investigated by observing the effect on a chemical indicator using reagent-clad optical fibres or optical waveguides
- G01N21/774—Systems in which material is subjected to a chemical reaction, the progress or the result of the reaction being investigated by observing the effect on a chemical indicator using reagent-clad optical fibres or optical waveguides the reagent being on a grating or periodic structure
- G01N21/7743—Systems in which material is subjected to a chemical reaction, the progress or the result of the reaction being investigated by observing the effect on a chemical indicator using reagent-clad optical fibres or optical waveguides the reagent being on a grating or periodic structure the reagent-coated grating coupling light in or out of the waveguide
Definitions
- the invention relates to a variable embodiment of a sensor platform based on a planar thin-film waveguide for determining one or more luminescences from one or more measurement areas on this sensor platform, comprising an optical layer waveguide with a first optically transparent layer (a) on a second optically transparent layer (b ) with a lower refractive index than layer (a) and at least one grating structure for coupling excitation light to the measuring ranges.
- the invention also relates to an optical system for determining luminescence with an excitation light source, an embodiment of a sensor platform according to the invention and at least one detector for detecting the light emanating from the measuring areas on the sensor platform, and an analytical system which comprises a sensor platform according to the invention, an optical system according to the invention and supply means, to bring one or more samples into contact with the measurement areas on the sensor platform.
- an analytical system which comprises a sensor platform according to the invention, an optical system according to the invention and supply means, to bring one or more samples into contact with the measurement areas on the sensor platform.
- the objectives of the present invention are to provide sensor platforms and optical and analytical measurement arrangements for highly sensitive detection of one or more analytes.
- a planar thin-film waveguide consists of a three-layer system: carrier material, waveguiding layer, superstrate (or sample to be examined), the waveguiding layer having the highest refractive index. Additional intermediate layers can improve the effect of the planar waveguide.
- the strength of the evanescent field is very much dependent on the thickness of the waveguiding layer itself, and the ratio of the refractive indices of the waveguiding layer and the media surrounding it.
- thin waveguides that is to say layer thicknesses of the same or a lower thickness than the wavelength to be guided, discrete modes of the guided light can be distinguished.
- Different methods for the detection of analytes in the evanescent field of guided light waves in optical layer waveguides can be differentiated.
- a distinction can be made, for example, between fluorescence or general luminescence methods on the one hand and refractive methods on the other.
- methods for generating a surface plasmon resonance in a thin metal layer on a dielectric layer with a lower refractive index can be included in the group of refractive methods, provided that the resonance angle of the irradiated excitation light for generating the surface plasmon resonance serves as the basis for determining the measurement variable.
- the surface plasmon resonance can also be used to enhance luminescence or to improve the signal-to-background ratio in a luminescence measurement.
- luminescence denotes the spontaneous emission of photons in the ultraviolet to infrared range after optical or non-optical, such as, for example, electrical or chemical or biochemical or thermal excitation.
- chemiluminescence, bioluminescence, electroluminescence and in particular fluorescence and phosphorescence are included under the term "luminescence”.
- the change in the so-called effective refractive index due to molecular adsorption or desorption on the waveguide is used to detect the analyte.
- This change in the effective refractive index in the case of grating coupler sensors, is determined from the change in the coupling angle for the coupling or decoupling of light into or out of the grating coupler sensor, and in the case of interf erometric sensors from the change in the phase difference between the measurement light guided in a sensor arm and a reference arm of the interface.
- the refractive methods mentioned have the advantage that they can be used without the use of additional labeling molecules, so-called molecular labels.
- the disadvantage of these label-free methods is, however, that the detection limits that can be achieved with them are limited to pico- to nanomolar concentration ranges due to the low selectivity of the measuring principle, depending on the molecular weight of the analyte, which is not the case for many applications of modern trace analysis, for example for diagnostic applications is sufficient.
- luminescence-based methods appear more suitable due to the greater selectivity of the signal generation.
- the luminescence excitation is based on the penetration depth of the evanescent field into the optically thinner medium, i.e. on the immediate vicinity of the wave-guiding region with a penetration depth of the order of a few hundred nanometers ins Medium limited. This principle is called evanescent luminescence excitation.
- the evanescent luminescence excitation is of great interest for analysis, since the excitation is limited to the immediate vicinity of the wave-guiding layer and disruptive influences from the depth of the medium can be minimized.
- Photometric instruments for determining the luminescence of biosensors under evanescent excitation conditions with planar optical waveguides are also known and are described, for example, in WO 90/06503.
- the waveguiding layers used there are 160 nm to 1000 nm thick, the excitation wave is coupled in without a grating coupler.
- a major disadvantage of this method is that only small differences in refractive index can be achieved between the waveguiding layer and the substrate layer, which results in a relatively low sensitivity.
- the sensitivity is given as 20 nM fluorescein-labeled protein A. In order to be able to determine the slightest trace, this is still unsatisfactory and a further increase in sensitivity is therefore necessary. In addition, the reproducibility and practical feasibility of coupling light through prisms appears difficult due to the large dependence of the coupling efficiency on the quality and size of the contact surface between the prism and the waveguide.
- Another principle is proposed in US-A-5 081 012.
- the planar wave-guiding layer is 200 nm to 1000 nm thick and contains two gratings, one of which is designed as a reflection grating, so that the injected light wave has to pass through the sensor region lying between the gratings at least twice. In this way, increased sensitivity is to be achieved.
- a disadvantage is that the reflected radiation can lead to an undesirable increase in the background radiation intensity.
- WO 91/10122 describes a thin-layer spectroscopic sensor, which is characterized in that it has a coupling-in grating and a spatially distant coupling-out grating. It is particularly suitable for absorption measurement if a highly refractive inorganic metal oxide is used as the wave-guiding layer.
- Various embodiments are described which are suitable for coupling in and out multichromatic light sources.
- the preferred thickness of the waveguiding layer is greater than 200 nm and the grating depth should be approximately 100 nm. These conditions are not suitable for luminescence measurements in affinity sensors because only a low sensitivity is obtained. This is described in Appl. Optics Vol. 29, No. 31, (1990), 4583-4589 confirmed by the data of the total efficiency at 633 nm of 0.3% and at 514 nm of 0.01% for these systems.
- a plurality of polymeric planar waveguiding layers are applied to a substrate, which can be used as a gas mixture analyzer. You make yourself the change in the effective refractive index or the change in layer thickness of the polymeric waveguide when in contact with z. B. Use solvent vapors. The wave-guiding structure is physically changed. However, such changes are completely unsuitable for luminescence measurements in affinity sensor technology, since this changes the coupling, increases the scatter and the sensitivity can decrease significantly.
- WO 95/33197 describes a method in which the excitation light is coupled into the waveguiding film as a diffractive optical element via a relief grating.
- the surface of the sensor platform is brought into contact with a sample containing the analyte, and the isotropically emitted luminescence in the penetration depth of the evanescent field of luminescent substances is measured by means of suitable measuring devices such as, for example, photodiodes, photomultipliers or CCD cameras.
- WO 95/03538 it is proposed to mount a plurality of sample cells over a continuous wave-guiding layer, which are formed in the form of depressions in a sample plate above the wave-guiding layer. There is a grating under each sample cell, which couples out part of the light guided in the wave-guiding layer.
- the detection of the analyte is based on the change in the coupling-out angle depending on the analyte concentration.
- WO 94/27137 proposes a device and a method for carrying out immunoassays by means of evanescently excited fluorescence.
- the device consists of a continuous optical waveguide with two plane-parallel surfaces and a side edge, which acts as a coupling element in connection with a lens.
- a large number of specific binding partners are immobilized on at least one surface.
- these specific binding partners are arranged spatially separated on the continuous waveguide. In the exemplary embodiment, they are distributed in spots over the waveguide surface.
- planar glass-based optical components which contain waveguides in channel form, the waveguiding channels of which are produced by exchanging individual ions on the surface with the aid of masks (Glastechnischeberichte Vol. 62, page 285, 1989 ).
- the result is a physically continuous layer which has a slightly increased refractive index in the channels doped with ions. The increase is usually less than 5%.
- the manufacture of such components is complex and expensive.
- WO 99/13320 claims an optical sensor for the detection of at least two different light components. This The application mainly relates to refractive measurement methods, however fluorescence or phosphorescence methods are also used to generate the measurement signal.
- WO 99/13320 which also refers to multi-analyte determinations, a number of different definitions for the generation of a plurality of “sensing pads” are used, also in the same physical area (waveguide grating structure according to the nomenclature used in WO 99/13320) of the claimed sensor, given.
- devices for the simultaneous or successive execution of exclusively luminescence-based multiple measurements with essentially monomodal, planar inorganic waveguides, e.g. B. WO 96/35940, devices (arrays) are known in which at least two separate waveguiding areas are arranged on a Senso ⁇ latform, which are acted upon separately with excitation light.
- the division of the sensor platform into separate wave-guiding areas has the disadvantage, however, that the space required for discrete measurement areas, in discrete wave-guiding areas on the common sensor platform, is relatively large and therefore only achieves a relatively low density of different measurement fields (or so-called "features”) can be.
- Arrays with a very high feature density are known based on simple glass or microscope plates, without additional waveguiding layers.
- US 5445934 Affymax Technologies
- Arrays of oligonucleotides with a density of more than 1000 features per square centimeter are described and claimed.
- the excitation and layout of such arrays is based on classic optical arrangements and methods.
- the entire array can be illuminated simultaneously with an expanded excitation light bundle, which, however, leads to a relatively low sensitivity, since the scattered light component is relatively large and scattered light or background fluorescent light is also generated from the glass substrate in the areas in which there is no binding of the analyte immobilized oligonucleotides.
- spatially separated measuring areas (d) are to be defined by the areas which biological or biochemical or synthetic recognition elements immobilized there for the recognition of one or more analytes from a liquid sample.
- These surfaces can have any geometry, for example the shape of points, circles, rectangles, triangles, ellipses or lines.
- Different measurement areas can be separated from one another by lattice structures (c) and (c ') if a disturbing crosstalk of luminescent light generated in adjacent measurement areas and fed back into layer (a) is to be prevented.
- she can also be located on a common, continuous lattice structure, which, depending on the coupling efficiency of the lattice, leads to a partial or complete prevention of interfering crosstalk from luminescence.
- the present invention relates to a sensor platform for determining one or more luminescence from an array of at least two or more spatially separated measuring areas (d) or at least two or more spatially separated segments (d '), into which several measuring areas are combined, on this Platform comprising an optical layer waveguide with a first optically transparent layer (a) on a second optically transparent layer (b) with a lower refractive index than layer (a), with one or more grating structures (c) for coupling excitation light to the measurement areas (d ) at least two or more spatially separated measuring areas (d) or at least two or more spatially separated segments (d '), in which several measuring areas are combined, and the same or different biological or biochemical or synthetic recognition elements (e) immobilized on these measuring areas qualitative or quantitative detection of one or more analytes in a sample brought into contact with the measuring ranges, characterized in that crosstalk of luminescence generated in the measuring ranges or in the segments comprising several measuring ranges and fed back into the optically transparent layer (a) of the layer
- a lattice structure (c) or (c ') can therefore be used both as a coupling-in and a coupling-out grating. Furthermore, the function of the lattice structures (c) and (c ') can also be interchanged, i.e. that is, the lattice structures (c) and (c ') can be used alternately as coupling-in and / or coupling-out gratings.
- the grating structures (c) and (c ') enclose spatially separated measuring ranges (d)) or spatially separated segments (d'), in which several measuring ranges are combined.
- a circular, rectangular or polygonal arrangement of the lattice structures (c) and (c ') around the measurement areas or segments is preferred.
- the grating structures (c) and (c ') limit a measuring range or a segment only in the direction of propagation of the coupled excitation light. Then they are advantageously aligned parallel to each other.
- the lattice structures (c) and (c ') can also form a common continuous lattice structure on which there are several measurement areas or segments.
- both the excitation light and the feedback luminescent light with a suitable grating structure (c) are decoupled again at the point of coupling, it is possible to have a very high density of To create measurement areas on a common grid structure.
- the density that can be achieved is essentially determined by the minimum size of the spots, which are associated with the immobilization of the biological or biochemical or synthetic Detection elements can be achieved.
- the Senso ⁇ lattformen used can have clearances of several centimeters side length. It is therefore possible that up to 100,000 measuring ranges are arranged on a sensor platform in a 2-dimensional arrangement. A single measuring range can have an area of 0.001 - 6 mm.
- Another object of the invention is therefore a sensor platform for the simultaneous determination of one or more luminescences of at least two or more spatially separated measuring areas (d) or at least two or more spatially separated segments (d '), into which several measuring areas are combined, on this platform comprising an optical layer waveguide with a first optically transparent layer (a) on a second optically transparent layer (b) with a lower refractive index than layer (a), with one in the region of the at least two or more measuring ranges or at least two or more spatially separated segments (d '), in which several measuring ranges are combined, continuously modulated grating structure (c) for coupling excitation light to the measuring ranges (d)
- Identical or different biological or biochemical or synthetic recognition elements immobilized on these measurement areas for the qualitative or quantitative detection of one or more analytes in a sample brought into contact with the measurement areas, characterized in that the density of the measurement areas on the sensor platform is at least 16
- This arrangement of the sensor platform according to the invention is additionally distinguished by the advantage that the intensity of the interfering transmission light has a minimum when the coupling angle is reached, ie it disappears almost completely, which occurs when the excitation light is irradiated from the rear of the sensor platform, that is to say through the optically transparent layer (b) in the direction of the grating structure, which minimizes excitation light not serving for luminescence excitation in an optical system.
- the physical conditions for the disappearance of the transmission light and the simultaneous occurrence of an extraordinary "reflection" (as the sum of the regular portion of the reflection, in accordance with the radiation laws, and the light coupled out via the lattice structure) are described, for example, in D. Rosenblatt et al., “ Resonant Grating Waveguide Structures ", IEEE Journal of Quantum Electronics, Vol. 33 (1997) 2038-2059.
- the excitation light is irradiated to the measurement areas not under coupling conditions, but in a simple incident light or transmission light arrangement. Even then there will be an intensification of the luminescence in the near field of the optical layer waveguide, and a high feature density without optical crosstalk of signals from neighboring measurement areas can in turn be achieved by decoupling the signals by means of the grating structure.
- the invention therefore also relates to a sensor platform on this platform for the simultaneous determination of one or more luminescences of at least two or more spatially separated measurement areas (d) or at least two or more spatially separated segments (d '), into which several measurement areas are combined comprising an optical layer waveguide with a first optically transparent layer (a) on a second optically transparent layer (b) with a lower refractive index than layer (a), with one in the region of the at least two or more measuring ranges or at least two or more spatially separated segments (d '), in which several measuring ranges are combined, continuously modulated lattice structure (c) - at least two or more spatially separated measuring ranges (d) or at least two or more spatially separated segments (d '), in which several measuring ranges are combined, and
- Identical or different biological or biochemical or synthetic recognition elements immobilized on these measurement areas for the qualitative or quantitative detection of one or more analytes in a sample brought into contact with the measurement areas, characterized in that the density of the measurement areas on the sensor platform is at least 16
- the grating structure continuously modulated in the area of the one or more measuring areas or segments is a superimposition of 2 or more grating structures of different periodicity with parallel or non-parallel, preferably non-parallel, alignment of the grating lines, which differentiates the coupling of excitation light Wavelength is used, and in the case of two superimposed grating structures, their grating lines are preferably aligned perpendicular to one another.
- the extent of the propagation losses of a mode guided in an optically wave-guiding layer (a) is determined to a large extent by the surface roughness of an underlying carrier layer and by absorption due to possibly present in this carrier layer Chromophores determine what additionally harbors the risk of excitation of undesired luminescence in this carrier layer by penetration of the evanescent field of the mode carried out in layer (a). Furthermore, thermal stresses may occur as a result of different coefficients of thermal expansion of the optically transparent layers (a) and (b). In the case of a chemically sensitive, optically transparent layer (b), provided that it consists, for example, of a transparent thermoplastic, it is desirable to prevent solvents, which could attack the layer (b), from penetrating through the optically transparent layer (a). to prevent existing micropores.
- optically transparent layer (b ') with a lower refractive index than that of layer (a) and a thickness between the optically transparent layers (a) and (b) and in contact with layer (a) from 5 nm to 10,000 nm, preferably from 10 nm to 1000 nm.
- the function of the intermediate layer is to reduce the surface roughness under layer (a) or to reduce the penetration of the evanescent field of light guided in layer (a) into the one or more layers below or to improve the adhesion of layer (a) the one or more layers below or the reduction of thermally induced voltages within the optical sensor platform or the chemical isolation of the optically transparent layer (a) from layers below by sealing micropores in layer (a) against layers below.
- an adhesion-promoting layer (f) is applied to the optically transparent layer (a) for the immobilization of biological or biochemical or synthetic recognition elements (e).
- This adhesive layer should also be optically transparent.
- the adhesive layer should not be over the penetration depth of the evanescent field protrudes from the wave-guiding layer (a) into the medium above. Therefore, the adhesion promoting layer (f) should have a thickness of less than 200 nm, preferably less than 20 nm.
- it can include chemical compounds from the group consisting of silanes, epoxides, "self-organized functionalized monolayers".
- the measuring ranges it is possible to generate spatially separated measuring ranges (d) by spatially selective application of biological or biochemical or synthetic recognition elements on the sensor platform.
- a luminescent analyte or a luminescent-labeled analogue of the analyte competing with the analyte for binding to the immobilized recognition elements or another luminescent-labeled binding partner in a multi-stage assay these luminescent molecules will only selectively bind to the surface of the sensor platform in the measuring areas, which through the avenues are defined that are taken up by the immobilized recognition elements.
- one or more methods from the group of methods can be used, from inkjet spotting, mechanical spotting, micro contact printing, fluidic contacting of the measurement areas with the biological or biochemical or synthetic recognition elements by their supply in parallel or crossed microchannels, under the influence of pressure differences or electrical or electromagnetic potentials ".
- nucleic acids DNA, RNA, ...), nucleic acid analogs (PNA ..), antibodies, aptamers, membrane-bound and isolated receptors, their ligands, antigens can be applied as biological or biochemical or synthetic recognition elements for antibodies, "histidine tag components", cavities generated by chemical synthesis to accommodate molecular imprints, etc. is formed.
- the latter type of recognition elements are understood to mean cavities which are produced in a process which has been described in the literature as "molecular imprinting". To do this, mostly encapsulated in organic solution, the analyte or an analogue of the analyte, in a polymer structure. It is then called the “imprint”. Then the analyte or its analogue is removed from the polymer structure with the addition of suitable reagents, so that it leaves an empty cavity there. This empty cavity can then be used as a binding site with high steric selectivity in a later detection method.
- “Chemically neutral” compounds are substances which do not themselves have any specific binding sites for the detection and binding of the analyte or an analogue of the analyte or another binding partner in a multi-stage assay and which, due to their presence, give access to the analyte or its analogue or block another binding partner to the surface of the sensor platform.
- substances from the groups formed by bovine serum albumin or polyethylene glycol can be used as "chemically neutral” compounds.
- the lattice structure (c) is a diffractive lattice with a uniform period.
- the resonance angle for coupling the excitation light via the grating structure (c) to the measuring areas is then uniform in the entire area of the grating structure.
- the corresponding resonance angles for the coupling can be used make a clear distinction as to what the use of additional adjusting elements in an optical system for receiving the sensor platform may require or which may lead to spatially very unfavorable coupling angles.
- the lattice structure (c) is a multidiffractive lattice.
- the grating structure (c) has a periodicity which varies spatially perpendicular or parallel to the direction of propagation of the excitation light coupled into the optically transparent layer (a). Then, from a large-area irradiated, convergent or divergent beam, coupling will take place at the location on the lattice structure where the resonance condition is fulfilled.
- such a grating structure with a periodicity varying spatially or perpendicular to the direction of propagation of the excitation light coupled into the optically transparent layer (a) enables a method in which, in addition to the determination of one or more luminescences, changes in the effective refractive index on the measurement areas are determined. It can be advantageous if the one or more luminescences and / or determinations of light signals are carried out polarization-selectively at the excitation wavelength.
- the one or more luminescences are measured with a different polarization than that of the excitation light.
- the material of the second optically transparent layer (b) can consist of glass, quartz or a transparent thermoplastic, for example from the group formed by polycarbonate, polyimide or polymethyl methacrylate.
- the refractive index of the wave-guiding, optically transparent layer (a) is significantly larger than the refractive index of the adjacent layers. It is particularly advantageous if the refractive index of the first optically transparent layer (a) is greater than 2.
- the first optically transparent layer (a) can consist of Ti0 2 , ZnO, Nb 2 ⁇ 5 , Ta 2 0 5 , Hf0 2 , or Zr0 2 . It is particularly preferred if the first transparent optical layer (a) consists of Ti0 2 or Ta 2 Os.
- the thickness of the wave-guiding optically transparent layer (a) is the second relevant parameter for generating the strongest possible evanescent field at its interfaces with neighboring layers with a lower refractive index.
- the strength of the evanescent field increases with decreasing thickness of the waveguiding layer (a), as long as the layer thickness is sufficient to lead at least one mode of the excitation wavelength.
- the minimum “cut-off" layer thickness for guiding a mode depends on the wavelength of this mode. It is larger for longer-wave light than for short-wave light. However, as the "cut-off" layer thickness is approached, undesired propagation losses also increase sharply to what further limits the choice of preferred layer thickness.
- layer thicknesses of the optically transparent layer (a) which only allow the guidance of 1 to 3 modes of a predetermined excitation wavelength; layer thicknesses which lead in monomodal waveguides for this excitation wavelength are very particularly preferred. It is clear that the discrete mode character of the guided light only refers to the transverse modes.
- the thickness of the first optically transparent layer (a) is advantageously 40 to 300 nm.
- the thickness of the first optically transparent layer (a) is very particularly advantageously 70 to 160 nm.
- the resonance angle for the coupling of the excitation light in accordance with the above-mentioned resonance condition depends on the diffraction order to be coupled in, the excitation wavelength and the Gitte ⁇ eriode.
- the first diffraction order is advantageous.
- the grating depth is decisive for the level of the coupling efficiency. In principle, the coupling efficiency increases with increasing grid depth.
- the grating (c) has a period of 200 nm - 1000 nm and the modulation depth of the grating (c) is 3 to 100 nm, preferably 10 to 30 nm.
- the available total excitation intensity increases under these conditions up to the end of the illuminated area on the continuous lattice structure, in the direction of propagation of the guided light.
- This gradient of the intensity of available excitation light has the advantage that it can be used to expand the dynamic range.
- the coupling-in and coupling-out efficiency of a diffractive grating is essentially determined by the grating depth under other specified parameters. Therefore, said gradient of the intensity of the guided excitation and / or excited luminescent light can be additionally influenced and controlled if the grating (c) has a spatially varying grating depth in the direction of propagation of the coupled excitation light.
- propagation losses of the coupled excitation light in an optically transparent, wave-guiding layer lead to a negative gradient of the guided excitation light in its direction of propagation. Accordingly, through a targeted definition of the Amount of this propagation loss, for example through a targeted doping of the waveguiding layer with absorbing molecules but not interfering with the luminescence to be generated or by applying such absorbing molecules on the waveguiding layer, a controllable negative gradient of the intensity of the excitation and / or excited luminescent light within of a single and / or over several measuring ranges.
- the ratio of the modulation depth to the thickness of the first optically transparent layer (a) is equal to or less than 0.2.
- the grating structure (c) can be a relief grating with a rectangular, triangular or semicircular profile or a phase or volume grating with a periodic modulation of the refractive index in the essentially planar optically transparent layer (a).
- a thin metal layer preferably made of gold or silver
- optically or mechanically recognizable markings are applied to the sensor platform to facilitate adjustment in an optical system and / or for connection to sample containers as part of an analytical system.
- the present invention also relates to an optical system for determining one or more luminescences, with at least one excitation light source of a sensor platform according to at least one of the named
- Executions at least one detector for detecting the light emanating from the at least one or more measuring ranges (d) on the sensor platform.
- the excitation light is irradiated to the measurement areas in a simple incident light or transmission light arrangement.
- This results in significantly reduced requirements for the positioning of the sensor platform according to the invention in an optical system.
- this also enables the use of the sensor platform in a large number of luminescence excitation and detection systems already on the market, such as, for example, scanner systems.
- the detection of the luminescent light takes place in such a way that the luminescent light coupled out from a grating structure (c) or (c ') is also detected by the detector.
- the excitation light is irradiated onto the grating structure (c) or (c ') under coupling conditions.
- the excitation light emitted by the at least one light source is coherent and is irradiated onto the one or more measurement areas at the resonance angle for coupling into the optically transparent layer (a).
- the excitation light is expanded by at least one light source with an expansion lens to form a substantially parallel beam and is irradiated onto the one or more measurement areas, wherein this preferably takes place at the resonance angle for coupling into the optically transparent layer (a).
- a plurality of diffractive optical elements preferably Dammann gratings, or refractive optical elements, preferably microlens Arrays
- At least one spatially resolving detector is used for the detection.
- At least one detector from the group formed by CCD cameras, CCD chips, photodiode arrays, avalanche diode arrays, multichannel plates and multichannel photomultipliers can be used as the at least one spatially resolving detector.
- optical components from the group that are used by lenses or lens systems can be used between the one or more excitation light sources and the sensor platform according to one of the embodiments mentioned and / or between said sensor platform and the one or more detectors for shaping the transmitted light bundles, planar or curved mirrors for deflection and, if necessary, additionally for shaping light bundles, prisms for deflecting and possibly for spectrally dividing light bundles, dichroic mirrors for spectrally selective deflection of parts of light bundles, neutral filters for regulating the transmitted light intensity, optical Filters or monochromators for spectrally selective transmission of parts of light beams or polarization-selective elements for the selection of discrete polarization directions of the excitation or L be formed by fluorescent light.
- the excitation light is irradiated in pulses with a duration of between 1 fsec and 10 minutes.
- the emission light from the measurement areas is measured in a temporally resolved manner.
- the optical system according to the invention comprises components with which light signals from the group are measured for referencing, which are from excitation light at the location of the light sources or after their expansion or after their subdivision into partial beams, scattered light at the excitation wavelength from the range of one or more spatially separated measuring areas, and via the grating structure (c) in addition to the measuring areas, coupled light of the excitation wavelength is formed. It is particularly advantageous if the measuring ranges for determining the emission light and the reference signal are identical.
- the excitation light can be radiated onto and detection of the emission light from one or more measurement areas sequentially for individual or more measurement areas, in which case the sequential excitation and detection can be carried out using movable optical components, which consist of the group of mirrors, deflection prisms and dichroic mirrors is formed.
- movable optical components consist of the group of mirrors, deflection prisms and dichroic mirrors is formed.
- scanners are usually used for sequential excitation and detection in bioanalytical array systems, with which an excitation light beam is guided sequentially over the areas to be examined, usually by means of movable mirrors. Most scanner systems change the angle between the illuminated area and the excitation light beam.
- this angle must remain essentially constant, ie a scanner to be used in the optical system according to the invention must work at the correct angle. This requirement is met by some commercially available scanners. At the same time, however, the size of the stimulated areas on the sensor platform must not change. Therefore is a Another object of this invention is an optical system, which is characterized in that sequential excitation and detection is carried out using a scanner that is essentially true to the angle and focus.
- the sensor platform is moved between steps of sequential excitation and detection.
- the one or more excitation light sources and the components used for detection can be spatially fixed.
- the invention relates to a derived complete analytical system for luminescence detection of one or more analytes in at least one sample on one or more measurement areas on a sensor platform, comprising an optical layer waveguide, with a sensor platform according to one of the aforementioned
- Feeding means to mix the one or more samples with the
- the analytical system additionally comprises one or more sample containers which are opened towards the sensor platform at least in the area of the one or more measurement areas or the measurement areas combined into segments.
- the sample containers can each define a volume of 0.1 nl - 100 ⁇ l.
- the Senso ⁇ lattform can be operated in a closed giant system as well as in an open system.
- the analytical system is designed in such a way that the sample containers on the side facing away from the optically transparent layer (a) are closed, with the exception of inlet and / or outlet openings for the supply or outlet of the samples and, if appropriate, additional reagents and the supply or discharge of samples and, if appropriate, additional reagents take place in a closed flow-through system, wherein in the case of liquid supply to several measurement areas or segments with common inlet and outlet openings, these are preferably addressed in columns or rows.
- the analytical system according to the invention is designed in such a way that the sample containers have openings on the side facing away from the optically transparent layer (a) for the locally addressed addition or removal of the samples or other reagents.
- containers for reagents can be provided, which are wetted during the method for the detection of the one or more analytes and brought into contact with the measuring areas
- Another object of the invention is a method for the luminescence detection of one or more analytes in one or more samples on at least two or more, spatially separated measurement areas on a sensor platform for determining one or more luminescence from an array of at least two or more, spatially separated measurement areas (i.e. ) or at least two or more spatially separated segments (d '), in which several measuring ranges are combined, on this platform, comprising an optical layer waveguide
- the present invention in particular relates to a method for the simultaneous detection of luminescence of one or more analytes in one or several samples on at least two or more spatially separated measuring areas on a sensor platform for the simultaneous determination of one or more luminescence from at least two or more spatially separated measuring areas (d) or at least two or more spatially separated segments (d ') into which Several measuring ranges are combined on this platform, including an optical layer waveguide
- the density of the measuring areas on the sensor platform is at least 16 measuring areas per square centimeter and
- the excitation light is coupled to the measurement areas via the grating structure (c) in the optically transparent layer (a).
- This invention also relates to a method for luminescence detection of one or more analytes according to the above statements, using an analytical system according to one of the aforementioned embodiments, which comprises an optical system according to at least one of the aforementioned embodiments with a sensor platform according to at least one of the aforementioned embodiments, characterized in that one or more liquid samples, which are to be examined for the one or more analytes, are brought into contact with one or more measuring areas on the sensor platform, excitation light is directed into the measuring areas, luminescent substances in the samples or on the measuring areas are stimulated to luminescence and the emitted luminescence is measured.
- a method is claimed, which is characterized in that, by means of a controllable gradient of the guided excitation and / or excited luminescent light within a single and / or over several measuring ranges, parallel to the direction of propagation of the coupled excitation light, the dynamic range for the signal detection and / or quantitative analyte determination can be expanded or limited.
- a luminescence or ruorescence label can be used to generate the luminescence or ruorescence, which label can be excited and emitted at a wavelength between 300 nm and 1100 nm.
- the luminescence or ruorescence labels can be conventional luminescence or ruorescence dyes or so-called luminescent or fluorescent nanoparticles based on semiconductors (WCW Chan and S. Nie, "Quantum dot bioconjugates for ultrasensitive nonisotopic detection", Science 281 (1998) 2016 - 2018) act.
- the luminescence label can be on the analyte or in a competitive assay on an analog of the analyte or in a multistage assay on one of the binding partners of the immobilized biological or biochemical or synthetic recognition elements or on the biological or biochemical or synthetic recognition elements.
- a second or even more luminescence label with the same or different excitation wavelength as the first luminescence label and the same or different emission wavelength can be used. It can be advantageous here if the second or even more luminescence label can be excited at the same wavelength as the first luminescence label, but can emit at other wavelengths.
- the one or more luminescences and / or determinations of light signals at the excitation wavelength are carried out in a polarization-selective manner. Furthermore, the method allows the possibility that the one or more luminescences are measured at a different polarization than that of the excitation light.
- the inventive method according to one of the preceding embodiments enables simultaneous or sequential, quantitative or qualitative determination of one or more analytes from the group of antibodies or antigens, receptors or ligands, chelators or "histidine tag components", oligonucleotides, DNA or RNA Strands, DNA or RNA analogs, enzymes, enzyme factors or inhibitors, lectins and carbohydrates.
- the samples to be examined can be naturally occurring body fluids such as blood, serum, plasma, lymph or urine or egg yolk.
- a sample to be examined can also be an optically cloudy liquid, surface water, a soil or plant extract, a bio- or synthesis process broth.
- the samples to be examined can also be taken from biological tissue parts.
- the present invention furthermore relates to the use of a method according to at least one of the preceding embodiments for determining chemical, biochemical or biological analytes in screening methods in pharmaceutical research, combinatorial chemistry, clinical and preclinical development, for real-time binding studies and for determining kinetic parameters in affinity screen mg and in research, for qualitative and quantitative analyte determinations, in particular for DNA and RNA analysis, for the preparation of toxicity studies as well as for the determination of expression profiles and for the detection of antibodies, antigens, pathogens or bacteria in pharmaceutical product development and research, human and veterinary diagnostics, agrochemical product development and research, symptomatic and presymptomatic plant diagnostics, for patient stratification in pharmaceutical product development and nd for the therapeutic selection of medication, for the detection of pathogens, pollutants and pathogens, in particular salmonella, prions and bacteria, in food and environmental analysis.
- a sensor platform with the outer dimensions 16 mm wide x 48 mm long x 0.5 mm thick was used.
- the grids were 5 mm long x 12 mm wide (grid structure I) or 1 mm long x 12 mm wide (grid structure II), with the grid lines oriented parallel to the specified width.
- the lattice structures were arranged centrally symmetrically with respect to their inner sides for the excitation light to be coupled in and to be guided in the wave-guiding layer (a), at an inner distance of 20 mm on the sensor platform.
- the wave-guiding, optically transparent layer (a) on the optically transparent layer (b) was produced by "ion plating” and subsequent annealing at 300 degrees (see RE Kunz, J. Edlinger et al., "Grating Couplers in tapered waveguides for integrated optical sensing ", in Proc. SPIE vol.
- the grating structures (I) serve as continuous grating structures for coupling the excitation light to the measuring areas located thereon or to the measuring areas located between the grating structures (I) and (II), which, summarized as Segment, by coupling out, fed back luminescent light and guided excitation light through grating structure (II), from crosstalk into potential further measuring areas or segments located in this direction of propagation, according to which the grating structure (II) serving as coupling-out grating is separated.
- a sensor platform with the outer dimensions of 16 mm wide x 48 mm long x 0.7 mm thick was used.
- a continuous structure of a surface relief grating was formed in the substrate by means of holographic exposure of the waveguiding layer (a) covered with spun-on photoresist and subsequent wet chemical etching
- the wave-guiding, optically transparent layer (a) on the optically transparent layer (b) made of Ta 2 0 5 with a period of 364 nm and a depth of 25 +/- 5 nm, with orientation of the grating lines parallel to the specified width of the sensor platform was generated by reactive, magnetic field-assisted DC sputtering (see DE 4410258) and had a refractive index of 2.15 at 633 nm (layer thickness 150 nm).
- the sensor platforms were cleaned and silanized with epoxy silane in the liquid phase, as described above. Afterwards, solutions of 16-mer oligonucleotides (concentration of the deposited solution: 0.34 mM, 3 nl per spot) were applied with a commercial spotter and thus approximately circular measuring areas with a diameter of 140-150 ⁇ m at a distance (center to center) of 600 ⁇ m created in a 6 x 6 array on the continuous grid structure.
- concentration of the deposited solution 0.34 mM, 3 nl per spot
- the Senso ⁇ lattform is mounted on a computer-controlled adjustment unit, which allows the translation parallel and perpendicular to the grid lines as well as a rotation with a pivot point in the axis of the excitation light spot hitting the grid structure (I) for coupling into the Senso ⁇ lattform mentioned in example la.
- a shutter in the light path to block the light path if no measurement data are to be recorded.
- neutral filters or polarizers can be placed at this point or at other positions in the further path of the excitation light to the sensor platform in the light path in order to vary the excitation intensity step by step or continuously.
- the excitation light beam of a helium-neon laser (2 mW) is directed onto the right edge of the lattice structure I without the use of further beam-shaping components.
- the size of the excitation light spot corresponds to the diameter of the exciting laser beam.
- the sensor platform is adjusted for maximum coupling, which can be recognized from the maximum intensity of the scattered light which is emitted by scattering along the coupled-in excitation light. This maximum can be determined both visually and by imaging the scattered light detected with an imaging system along the excitation mode onto an optoelectronic detector, e.g. B. on the pixels of a CCD camera as an example of a spatially resolving detector or a photodiode as an example of a non-spatially resolving detector.
- a maximum signal is also measured with a second optoelectronic detector at the coupling angle for the guided excitation light on the second grating structure II.
- An angle of -3.8 ° is determined as the resonance angle for the coupling.
- Excitation unit a.ii) / sensor platform la The excitation light beam of a helium-neon laser (2 mW) is expanded with a lens combination, using a cylindrical lens, to form a slit-shaped light beam (parallel to the grating lines of the sensor platform).
- the upper and lower marginal areas of the excitation light which is slightly divergent parallel to the grid lines, but parallel in the perpendicular projection, are hidden by a slit.
- the resulting light beam with a slit-shaped cross section on the lattice structure is directed onto the right edge of the lattice structure I.
- the excitation light spot has a size of 1 mm length x 12 mm width.
- the sensor platform is adjusted for maximum coupling, which can be recognized from the maximum intensity of the scattered light which is emitted by scattering along the coupled-in excitation light.
- This maximum can be determined both visually and by imaging the scattered light detected with an imaging system along the excitation mode onto an optoelectronic detector, e.g. B. on the pixels of a CCD camera as an example of a spatially resolving detector or a photodiode as an example of a non-spatially resolving detector.
- a maximum signal is also measured with a second optoelectronic detector at the coupling angle for the guided excitation light on the second grating structure II. An angle of -3.9 ° is determined as the resonance angle for the coupling.
- the excitation light of a helium-neon laser is broken down with a Dammann grating into 16 partial beams arranged linearly parallel to the grating lines.
- the manufacturer optimized the non-uniform sequence of grooves and ridges of the Dammann grating in such a way that all even-numbered diffraction orders, in particular the zero order, were suppressed and the same intensity (with a variation of less than 5%) was achieved in the odd-numbered diffraction orders .
- An aspherical lens after the Dammann grating in the direction of the sensor platform, in the focal point of which is the Dammann grating, is used to generate a bundle of parallel partial beams from the partial beams divergent after the Dammann grating.
- the divergence of the partial beams emerging after the Dammann grating and the focal length of the lens located behind them can be coordinated with one another in such a way that a desired beam distance on the Senso ⁇ lattform is generated.
- 16 partial beams were generated with the Dammann grating used, of which, after passing through a slit-shaped diaphragm, 8 partial beams were directed via a deflection prism onto the right edge of the grating structure I serving as a coupling grating.
- the coupling condition could be fulfilled for all 8 partial beams at the same time, which was evident from the simultaneous maximum intensity of the scattered light generated along the coupled partial beams and guided in the wave-guiding layer (a).
- the coupling angle was -3.8 °.
- the excitation light beam of a helium-neon laser at 632.8 nm is widened to a parallel beam with a circular cross section of 2 cm in diameter using a 25-fold expansion optics.
- An area of 1 mm length x 9 mm width (corresponding to the designations for the lattice structures) is selected from the central part of the excitation light bundle and guided via a deflection prism to the right edge of the lattice structure I (in the direction of the excitation light to be coupled in and guided).
- the sensor platform is adjusted for maximum coupling, which can be recognized from the maximum intensity of the scattered light which is emitted by scattering along the coupled-in excitation light.
- This maximum can be determined both visually and by imaging the scattered light detected with an imaging system along the excitation mode onto an optoelectronic detector, e.g. B. on the pixels of a CCD camera as an example of a spatially resolving detector or a photodiode as an example of a non-spatially resolving detector. Under the same coupling conditions, a maximum signal is also measured with a second optoelectronic detector at the coupling angle for the guided excitation light on the second grating structure II.
- an optoelectronic detector e.g. B. on the pixels of a CCD camera as an example of a spatially resolving detector or a photodiode as an example of a non-spatially resolving detector.
- An angle of -3.8 ° is determined as the resonance angle for the coupling.
- the amount of light that passes through is measured with a laser power meter behind the position of the sensor platform.
- a value of 88 ⁇ W is determined as the available excitation intensity (without the sensor platform in the beam path). With the sensor platform in between, but without coupling into the wave-guiding layer, the transmission is 79 ⁇ W. When the coupling is fulfilled this value decreases to 21 ⁇ W, ie 24% of the total available excitation light.
- the excitation light beam of a helium-neon laser at 632.8 nm is widened to a parallel beam with a circular cross section of 2 cm in diameter using a 25-fold expansion optics.
- An area of 4 mm length x 9 mm width (corresponding to the designations for the lattice structures) is selected from the central part of the excitation light bundle and then directed via a deflection prism to the right edge of the lattice structure I (in the direction of the excitation light to be coupled in and guided) .
- the Senso ⁇ lattform is adjusted to maximum coupling, which is recognizable by the excitation light guided along the coupled mode by scattered light.
- An angle of -4 ° is determined as the resonance angle for the coupling.
- the sensor platform is laterally shifted without changing the angle so that the 4 mm long excitation light surface is in the middle of the 5 mm long grid structure.
- the amount of light that passes through is measured with a laser power meter behind the position of the sensor platform.
- a value of 250 ⁇ W is determined as the available excitation intensity (without a sensor platform in the beam path).
- the transmission is 240 ⁇ W. If the coupling is fulfilled, this value decreases to 51 ⁇ W, i.e. H. 20% of the total available excitation light.
- the signal was captured and focused on the CCD chip using a Heligon tandem lens (Rodenstock, two XR Heligon 1.1 / 50 mm). Mounted on a filter wheel, between the two halves of the Heligon tandem objective were 2 interference filters (Omega, Brattleborough, Vermont) with a central wavelength of 679 nm and 25 nm bandwidth, as well as either a neutral filter (for transmission of the attenuated, scattered excitation and much weaker luminescent light from the measuring ranges) or a neutral filter in combination with an interference filter (for the transmission of the attenuated excitation light scattered from the measuring ranges). The signals at the excitation and the luminescence wavelength were measured alternately.
- the signal acquisition and focusing on the CCD chip was carried out with a Heligon tandem lens as in the previous example. Between the two halves of the Heligon tandem lens, in the direction of propagation of the emission beam path in the direction of the detector, there was initially a beam part plate at 45 ° for right-angled reflection of the light component reflected by Fresnel reflection (predominantly consisting of light at the excitation wavelength) and then 2 interference filters (Omega, Brattleborough, Vermont) with a central wavelength of 679 nm and 25 nm bandwidth for the selective transmission of luminescent light.
- the light reflected from the emission beam path via the beam part plate was passed either directly or after passing through an interference filter for the excitation wavelength to a spatially resolving detector or a non-spatially resolving detector.
- the reference signals which, as in the above examples for the detection unit, each capture the same areas on the sensor platform, were recorded simultaneously with the luminescence signals from the measurement areas. (ii). Detection system for sequential measurement of measuring ranges
- the measuring range to be imaged on the Senso ⁇ latform is in the focus of a lens system, which depicts the measuring range on a diaphragm in a 1: 1 image, with which areas outside the relevant measuring range can be masked out.
- the diaphragm is in turn in the focal point of the first of a system consisting of at least 2 lenses, so that a parallel beam path is then generated again in the direction of the detector.
- the parallel beam path there is initially a beam partial plate at 45 ° to the parallel beam path, with which part of the detected light, which mainly comprises scattered light at the excitation wavelength, is used in the direction of the reference detector, for example by means of Fresnel reflections.
- a phodiode mt downstream amplifier reflected, possibly after passing through an interference filter at the excitation wavelength.
- the luminescent light that spreads further after the beam part plate is selected by means of two interference filters (Omega Optical, 679 DF25) and focused on the detector, which serves as a selected photomultiplier in conjunction with a photon counting unit (Hamamatsu H6240-02 select).
- the sensor platform is shifted in the x and y directions by means of the adjusting elements described under example 2.a).
- a combination of simultaneous excitation of several measuring ranges and signal detection by means of spatially resolving detectors and translation steps for detecting larger parts of the sensor platform than can be excited and detected in a single step can also be carried out.
- a sensor platform according to example la) is used with an excitation unit according to example 2 a.iv).
- the detection unit is designed according to Example 2.b.i.I).
- a closed sample container with a sample chamber open to the sensor platform is used, which encloses the entire area including the lattice structures I and II with a width of 8 mm.
- the material of the sample container advantageously consists of a self-adhesive, flexible and fluid-sealing, fluorescence-free and low-reflection plastic, in the exemplary embodiment of blackened polydimethylsiloxane.
- the depth of the sample chamber is 0.1 mm, so that the total volume of the sample chamber is approximately 25 ⁇ L.
- the continuous sample chamber is used for the simultaneous application of one and the same sample or reagents to all measuring ranges.
- the sample and reagents are supplied with syringe pumps (Cavro XL 3000, Cavro, Sunnyvale, CA, USA) with a dosing accuracy of 1 ⁇ l - 10 ⁇ l, depending on the size of the syringe.
- the syringe pumps are part of a Ruidik system, which also includes a commercial autosampler (Gilson 231 XL), one or more multi-way valves and a sample loop. By switching one or more valves and transporting them through the pumps, different reagents or samples can be directed to the measuring ranges.
- a sensor platform according to example la) is used with an excitation unit according to example 2 a.ii).
- the detection unit is designed according to Example 2.biI).
- a closed flow cell with 5 parallel sample chambers open to the sensor platform, each 1 mm wide, at a distance of 1 mm, is used, which extends up to the lattice structures I and II extend out.
- the depth of the sample chamber is 0.1 mm, so that the total volume of the sample chambers comprises approximately 2.5 ⁇ L each.
- the 5th Sample chambers are used to apply the same or different samples or reagents to the measuring ranges addressed from above.
- the sample and reagents are supplied with syringe pumps (Cavro XL 3000, Cavro, Sunnyvale, CA, USA) with small syringe sizes 50 ⁇ l - 250 ⁇ l, with which a dosing accuracy of approximately 0.5 ⁇ l can be achieved.
- the syringe pumps are part of a fluidic system that also includes a commercial autosampler (Gilson 231 XL), one or more multi-way valves, and one or more sample loops. By switching one or more valves and transporting them through the pumps, various reagents or samples can be directed to the measuring ranges.
- a sensor platform according to example lb) is used with a monodiffractive lattice structure formed over the entire sensor platform, and an excitation unit according to example 2 a.v).
- the detection unit is designed according to Example 2.b.i.I).
- the sensor platform is arranged horizontally.
- the structure for the sample containers is formed from a 1 to 3 mm thick, self-adhesive and fluid-sealing, flexible plate made of blackened polydimethylsiloxane, into which a multitude of continuous recesses (with typical diameters of 1 mm - 3 mm) have been made, which geometrically correspond to the correspond to measurement areas that are individually fluidically addressed or measurement areas combined into segments.
- the PDMS plate structured in this way which can be molded in high piece steel from a corresponding master (just like the sample containers mentioned above as an example), is brought into contact with the surface of the sensor platform and adheres to one another on this sub-fluidic seal of the cutouts.
- the same or different samples and reagents, individually addressed, are added to or drawn from the sample containers with a single or multiple parallel dispenser.
- the Ruidik application steps are carried out under a saturated water vapor atmosphere.
- the dispenser is part of a Ruidik system, which also includes a commercial autosampler (Gilson 231 XL), one or more multi-way valves and a sample loop. By switching one or more valves and transporting them through the pumps, different reagents or samples can be directed to the measuring ranges.
- a commercial autosampler Gilson 231 XL
- a sensor platform according to example lb) is used with a monodiffractive lattice structure formed over the entire sensor platform, and an excitation unit according to example 2.a.v).
- the detection unit is designed according to Example 2.b.i.I).
- the sensor platform In order to allow the addition or removal of samples and reagents to the individually addressable measuring areas or segments, the sensor platform is arranged horizontally.
- the same or different samples and reagents, individually addressed, are applied to the measuring areas or segments with a single or multiple parallel dispenser or are extracted from them.
- the Ruidik application steps are carried out under a saturated water vapor atmosphere.
- the dispenser is part of a Ruidik system, which also includes a commercial autosampler (Gilson 231 XL), one or more multi-way valves and a sample loop. By switching one or more valves and transporting them through the pumps, different reagents or samples can be directed to the measuring ranges.
- Ruidik system also includes a commercial autosampler (Gilson 231 XL), one or more multi-way valves and a sample loop.
- Hybridization buffer consisting of 326 mL 0.070 M phosphate buffer (pH 7), 29.5 g KCL, 0.09 g EDTA x 2 H 2 0, 2.25 g poly (acrylic acid) 5100 sodium salt, 2.25 g Tween 20, 1.13 g of sodium azide, made up to 4.5 l with distilled water and adjusted to pH 7.7 with 1 molar sodium hydroxide solution.
- Regeneration solution 0.22 g sodium chloride, 0.11 g sodium citrate, 2.5 g Tween 20, 142 g formamide and 0.13 g sodium azide, dissolved in 250 mL deionized water.
- a sensor platform according to example la) is used with a
- the measuring procedure consists of the following individual steps:
- a sensor platform according to example lb) is used with a
- the measuring procedure consists of the following individual steps:
- the sensor platform was shifted so far in the longitudinal direction without changing the angle that part of the excitation light, which was coupled in near the right edge of the lattice structure 1, could spread further in the optically transparent layer a) in the direction of the lattice structure II, where it was then was decoupled.
- the second 6 x 6 array of measurement areas lying between these lattice structures was excited, as an example for a segment of measurement areas.
- the top two rows of the array were at the top of the sample container. The signals from the relevant measuring ranges were not taken into account in the evaluation.
- a sensor platform with the outer dimensions 16 mm wide x 48 mm long x 0.7 mm thick was used.
- the optically transparent layer (a) on the optically transparent layer (b) made of Ta 2 0 5 was produced by reactive, magnetic field-assisted DC sputtering and had a refractive index of 2.15 at 633 nm (layer thickness 150 nm).
- the sensor platform contained 2 discrete lattice structures, each with a period of 360 nm, with the same arrangement as in example la) (dimensions of 5 mm length x 12 mm width or 1 mm length x 12 mm width, with depths of 12 + / - 3 nm).
- the lattice structures were not used in the measuring method described below, neither for luminescence excitation nor for luminescence detection.
- a sensor platform with the outer dimensions 16 mm wide x 48 mm long x 0.7 mm thick was used, with similar physical parameters as example b).
- a continuous structure of a surface relief grating with a period of 360 nm and a depth of again 25 +/- 5 nm was produced in the substrate by means of holographic exposure of the waveguiding layer (a) covered with spun-on photoresist and subsequent wet chemical etching, with the grating lines being oriented in parallel to the declared width of the sensor platform.
- the wave-guiding, optically transparent layer (a) on the optically transparent layer (b) made of Ta 2 ⁇ 5 was generated by reactive, magnetic field-assisted DC sputtering (see DE 4410258) and had a refractive index of 2.15 at 633 nm (layer thickness 150 nm ).
- excitation light of 633 nm can be coupled into the structure at an angle of approximately + 3 °; Coupling or coupling out of light with a wavelength of 670 nm (corresponding to the maximum of the ruorescence of Cy5) takes place at an angle of approximately -6 °.
- CCGTAACCTCATGATATT-3'-NH2 (18 * Cy5-NH2) two arrays of 16 x 8 spots (8 rows x 16 columns) each applied (50 pl per spot).
- the concentration of the applied solutions was alternately 10 " per row or 10 " M 18 * Cy5-NH2, so that the spots produced (approx. 125 ⁇ m diameter in a center-to-center distance of 375 ⁇ m) had ruorophore concentrations of approx. 100 or 10 ruorophores per ⁇ m 2 .
- the spot arrays each about 3.2 mm wide x 5.8 mm long, were arranged one behind the other at a distance of 3.3 mm on the Senso l platforms, so that in the case of the Senso o platform (i), both arrays were a few millimeters apart from the next coupling grids.
- the intensity of the fluorescence intensity in the spot arrays on the sensor platforms (i) and (ii) was measured with a commercial scanner (Genetic Microsystems 418 Array Scanner), while the excitation light was irradiated in a reflected light arrangement with a convergent excitation light bundle.
- the optical axis of the excitation light beam was oriented perpendicular to the sensor platform.
- the excitation light intensity was about 5 mW.
- the numerical aperture of the objective lens of the laser scanner is what corresponds to a half opening angle of approximately 53 °.
- the scan speed corresponded to the information in the product catalog (18 mm / min with a scan width of 22 mm).
- the significant increase in the observed ruorescence intensity can be explained by the fact that a considerable proportion of the non-vescent excited ruorescence is coupled into the ruorophores located in the near field of the optically transparent layer (a). Via the continuously modulated lattice structure, however, it is coupled out again after a very short run length, which is dependent on the depth of the lattice structure. Since the decoupling takes place at an angle of approximately -6 ° due to the given parameters of the sensor platform, the decoupled portion is also detected by the detector due to the high numerical aperture of the objective. A certain portion of the observed increase in luminescence may additionally be attributed to a small portion of the coupled excitation light. The high efficiency of the decoupling is shown by the fact that there are no significant differences in the background signals, so that crosstalk of feedback Ruorescence light in neighboring measurement areas can be effectively prevented according to the invention.
- the intensity of the fluorescence intensity in the spot arrays on the sensor platforms (i) and (ii) was measured with a commercial scanner (Genetic Microsystems 418 Array Scanner), while the excitation light was irradiated in a reflected light arrangement with a convergent excitation light bundle.
- the optical axis of the excitation light beam was oriented perpendicular to the sensor platform.
- the excitation light intensity was about 5 mW.
- the numerical aperture of the objective lens of the laser scanner is what corresponds to a half opening angle of approximately 53 °.
- the scan speed corresponded to the information in the product catalog (18 mm / min with a scan width of 22 mm).
- the significant increase in the observed fluorescence intensity can be explained by the fact that a significant proportion of the non-vanescent excited ruorescence couples into the ruorophores located in the near field of the optically transparent layer (a). Via the continuously modulated lattice structure, however, it is coupled out again after a very short run length, which is dependent on the depth of the lattice structure. Since the decoupling takes place at an angle of approximately -6 ° due to the given parameters of the sensor platform, the decoupled portion is also detected by the detector due to the high numerical aperture of the objective. A certain portion of the observed increase in luminescence may additionally be attributed to a small portion of the coupled excitation light. The high efficiency of the coupling-out can be seen in the fact that there are no significant differences in the background signals, so that crosstalk from the feedback fluorescent light into neighboring measuring ranges can be effectively prevented according to the invention.
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Abstract
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PCT/EP2000/004869 WO2000075644A1 (en) | 1999-06-05 | 2000-05-29 | Sensor platform and method for analysing multiple analytes |
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