DE10237704A1 - Method and device for the intermolecular transfer of activation energy for bond cleavage through space - Google Patents
Method and device for the intermolecular transfer of activation energy for bond cleavage through space Download PDFInfo
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- DE10237704A1 DE10237704A1 DE2002137704 DE10237704A DE10237704A1 DE 10237704 A1 DE10237704 A1 DE 10237704A1 DE 2002137704 DE2002137704 DE 2002137704 DE 10237704 A DE10237704 A DE 10237704A DE 10237704 A1 DE10237704 A1 DE 10237704A1
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Abstract
Die vorliegende Erfindung betrifft ein Verfahren zur Spaltung chemischer Bindungen, wobei die Aktivierungsenergie zur Bindungsspaltung durch den Raum von einem Trägermolekül geliefert wird, das von seinem Grundzustand in einen angeregten Zustand wechseln kann, indem es mit elektromagnetischer Strahlung bestrahlt wird. DOLLAR A Weiterhin betrifft die vorliegende Erfindung eine Vorrichtung für den intermolekularen Transfer der Aktivierungsenergie zur Bindungsspaltung von Trägermolekülen zu Zielmolekülen, die die zu spaltende Bindung enthalten, umfassend einen Vorratsbehälter, der die Trägermoleküle enthält, Mittel (113) zum Transport der Trägermoleküle durch einen Aktivierungsbereich (104), Aktivierungsmittel (102) und einen Austauschbereich (101), der das Zielmolekül enthält. Weiterhin betrifft die vorliegende Erfindung die Verwendung des erfindungsgemäßen Verfahrens und die Ausführung der lichtgesteuerten in-situ-Synthese in 5' nach 3' oder 3' nach 5' Richtung von Nukleinsäurederivaten auf festen Trägern zur Herstellung von Biochips oder Genchips.The present invention relates to a method for breaking chemical bonds, the activation energy for breaking the bond being delivered through space by a carrier molecule which can change from its ground state to an excited state by being irradiated with electromagnetic radiation. The invention further relates to a device for the intermolecular transfer of the activation energy for the bond cleavage of carrier molecules to target molecules which contain the bond to be cleaved, comprising a storage container which contains the carrier molecules, means (113) for transporting the carrier molecules through an activation region ( 104), activating agent (102) and an exchange area (101) containing the target molecule. Furthermore, the present invention relates to the use of the method according to the invention and the execution of the light-controlled in-situ synthesis in 5 'to 3' or 3 'to 5' direction of nucleic acid derivatives on solid supports for the production of biochips or gene chips.
Description
Die vorliegende Erfindung betrifft ein Verfahren zur Spaltung chemischer Bindungen und eine Vorrichtung zum intermolekularen Transfer von Aktivierungsenergie zur Bindungsspaltung und insbesondere ein Verfahren zur Durchführung einer Nukleinsäuresynthese in 5' nach 3' oder 3' nach 5' Richtung. Das Verfahren kann unter anderem zur Herstellung von Arrays aus Oligomeren verwendet werden, die über ihre 5' oder 3' Enden an einen Träger gebunden sind.The present invention relates to a method for breaking chemical bonds and a device for the intermolecular transfer of activation energy for bond cleavage and in particular a method for performing nucleic acid synthesis in 5 'after 3' or 3 'after 5' direction. The procedure can be under others for the production of arrays from oligomers, which are used via their 5 'or 3' ends on a support are bound.
Verfahren zur Spaltung chemischer Bindungen sind weithin bekannt und werden in der Chemie, Biochemie und auf verwandten technologischen Gebieten verwendet. Zum Beispiel wird die Bindungsspaltung, die ebenfalls als „homolytische Dissoziation" bezeichnet wird, in Molekülen erreicht durch:
- – Erhitzen (thermische Dissoziation). Die Energie zur Bindungsspaltung, wird durch eine externe Quelle thermischer Energie zur Verfügung gestellt.
- – Bestrahlen (photochemische oder photolytische Dissoziation). Die Energie zur Bindungsspaltung wird in Form von Photonen zur Verfügung gestellt.
- – Anlegen eines elektrischen Stroms in einem geeigneten Medium (elektrolytische Dissoziation).
- - heating (thermal dissociation). The energy for bond breaking is provided by an external source of thermal energy.
- - irradiation (photochemical or photolytic dissociation). The energy for bond cleavage is provided in the form of photons.
- - Applying an electrical current in a suitable medium (electrolytic dissociation).
Die zur Bindungsspaltung notwendige Energie (die so genannte Aktivierungsenergie, umfassend die „eigentliche" Bindungsenergie oder Bindungsenthalpie Δ/H) ist für jede chemische Bindung verschieden und hängt weiterhin, sogar für identische Bindungen, ebenfalls von der spezifischen chemischen Umgebung jedes Bindungspartners ab.The one necessary for bond breaking Energy (the so-called activation energy, comprising the "actual" Binding energy or enthalpy Δ / H) is different for each chemical bond and hangs continue, even for identical bonds, also from the specific chemical Environment of each binding partner.
Die photochemische Spaltung chemischer Bindungen oder photochemisch induzierte Reaktionen erfordern im Allgemeinen einen komplizierten Geräteaufbau, insbesondere wenn sie in großem Maßstab durchgeführt werden: Damit sie mittels Bestrahlung mit den notwendigen Wellenlängen zur Reaktion gebracht werden können, müssen sich weiterhin alle beteiligten Reaktionspartner in demselben Reaktor oder Reaktorsystem befinden. Das Bestrahlungsverfahren kann oftmals auch zu ungewollten Nebenreaktionen und Nebenprodukten führen, die die Gesamtausbeute verringern und beschwerliche Reinigungsverfahren der Produkte erforderlich machen.The photochemical cleavage of chemical bonds or photochemically induced reactions generally require a complicated device structure, especially if they are carried out on a large scale: So that they can be irradiated with the necessary wavelengths Reaction can be brought have to all the reactants involved continue to be in the same reactor or reactor system. The radiation procedure can often also lead to unwanted side reactions and byproducts that the Reduce overall yield and cumbersome cleaning procedures of the products.
Dies ist insbesondere auf dem Gebiet
der lichtgesteuerten in-situ-Synthese von Nukleinsäuren auf
festen Trägern
beschwerlich, die bei der Herstellung so genannter Biochips oder
Genchips (Nukleinsäurechips)
Verwendung findet. Üblicher
Weise werden hauptsächlich
zwei Techniken für
die photolytische in-situ-Synthese von Nukleinsäurederivaten (Oligonukleotide)
auf festen Trägern
verwendet. Das erste Verfahren wird „photolitographisches Verfahren"
genannt, das photolithographische Masken verwendet, wie es zum Beispiel
im US Patent Nr.
Ein alternatives Verfahren für die lichtgesteuerte in-situ-Synthese von Oligonukleotiden, unter Verwendung lichtempfindlicher Schutzgruppen wurde von Bogoslawski, J. (2001), Drug Discovery and Development, 3, Seite 15–16 vorgeschlagen. Die üblichen Masken mit Löchern werden durch virtuelle Masken, bestehend aus Platten und Mikrospiegel, ersetzt. Das Verfahren wurde als „maskenlose Arraysynthese" (MAS) bezeichnet. Dieses Verfahren erlaubt es, definierte Arrays auf der Chipoberfläche mit UV-Licht unter Verwendung von bis zu 480.000 Mikrospiegeln zu bestrahlen.An alternative method for light-controlled in situ synthesis of oligonucleotides using photosensitive Protection groups were developed by Bogoslawski, J. (2001), Drug Discovery and Development, 3, pages 15-16 proposed. The usual Masks with holes are created by virtual masks consisting of plates and micromirrors, replaced. The process was called "maskless array synthesis" (MAS). This procedure allows defined arrays on the chip surface with UV light using up to 480,000 micromirrors irradiate.
Das US Patent
Es war daher eine Aufgabe der vorliegenden Erfindung, ein neues und wirksames Verfahren zur Spaltung chemischer Bindungen, insbesondere zur Spaltung chemischer Bindungen in Molekülen während der in-situ-Synthese von Oligonukleotiden bei der Herstellung von Biochips zur Verfügung zu stellen. Diese Aufgabe wurde durch ein Verfahren zur Spaltung chemischer Bindungen gelöst, wobei die zur Bindungsspaltung einer ausgewählten Bindung notwendige Aktivierungsenergie mittels eines Trägermoleküls durch den Raum geliefert wird. Diese „räumliche Entkopplung" des Aktivierungs- und Reaktionsprozesses führt zu einer großen Abnahme an ungewollten Nebenprodukten. Weiterhin führt sie zur Beseitigung von Nebenreaktionen, die immer vorhanden sind, wenn eine Reaktionsmischung, die alle Reaktionspartner enthält, bestrahlt wird. Bei dem erfindungsgemäßen Verfahren trägt nur das Trägermolekül die Aktivierungsenergie zur Bindungsspaltung, wobei das Trägermolekül an einem anderem Ort aktiviert wird und die notwendige Aktivierungsenergie zu einem Bereich überträgt, wo die photochemische Reaktion stattfinden wird, das heißt die Spaltung ausgewählter chemischer Bindungen in einem Zielmolekül.It was therefore an object of the present invention a new and effective process for breaking chemical bonds, especially for breaking chemical bonds in molecules during the in situ synthesis of oligonucleotides in the production of biochips to disposal to deliver. This task was accomplished through a split process chemical bonds released, the activation energy necessary for the bond cleavage of a selected bond by means of a carrier molecule the room is delivered. This "spatial decoupling" of the activation and reaction process leads to a big one Decrease in unwanted by-products. She continues to lead to eliminate side reactions that are always present when a reaction mixture containing all reactants is irradiated becomes. In the method according to the invention only carries the carrier molecule the activation energy for bond cleavage, the carrier molecule being activated at another location and transfers the necessary activation energy to an area where the photochemical reaction will take place, that is the cleavage selected chemical bonds in a target molecule.
Der Begriff „Trägermolekül", wie er vorliegend verwendet wird, umfasst Moleküle mit Elektronen in Energieniveaus im Grundzustand, die durch Strahlungsenergie angeregt werden können, wobei sich die angeregten Elektronen in einem Energieniveau des angeregten (oder aktivierten) Zustands, der eine höhere Energie als das Energieniveau des Grundzustands aufweist, befinden werden.The term “carrier molecule” as used in the present context includes molecules with electrons in energy levels in the ground state that can be excited by radiation energy, the excited electrons being in an energy level of the excited (or activated) state, which is a higher energy than the energy level of the ground state.
Der Begriff „angeregter Zustand", wie er vorliegend verwendet wird, bedeutet irgend einen beliebigen elektronisch angeregten Zustand eines Moleküls. Die Elektronenübergänge von den Grundzuständen zu den angeregten Zuständen werden als „vibronisch" bezeichnet, weil Elektronenübergänge von Vibrationsübergängen begleitet werden. Ein „angeregter Zustand" kann zum Beispiel der Triplettzustand sein, wenn der Grundzustand der Singulettzustand ist, oder aber der Singulettzustand sein, wenn der Grundzustand der Triplettzsutand ist. Aber auch jede anderen Grund- und angeregten Zustände von Molekülen sind von der Erfindung mitumfasst.The term "excited state" as used herein means any electronic excited state of a molecule. The electron transitions from the basic states to the excited states are called "vibronic" designated because electron transitions from Vibration transitions accompanied become. An “excited State "can be, for example, the triplet state if the ground state is the singlet state, or the singlet state if the Ground state is the triplet state. But also any other basic and excited states of molecules are included in the invention.
Weiterhin liegt ein wichtiges Merkmal der vorliegenden Erfindung darin, dass die Trägermoleküle durch Wechselwirken mit der elektromagnetischen Strahlung nicht zerstört oder zersetzt werden.There is also an important feature the present invention in that the carrier molecules by interacting with electromagnetic radiation is not destroyed or decomposed.
Der Begriff „Zielmolekül" bezeichnet jedes Molekül, das in der Lage ist, eine chemische Reaktion mit einem Reaktionspartner einzugehen, wenn die für die Durchführung der chemischen Reaktion notwendige Aktivierungsenergie durch die Trägermoleküle geliefert wird.The term "target molecule" refers to any molecule that in capable of a chemical reaction with a reactant to enter if the for the implementation the activation energy required by the chemical reaction Carrier molecules supplied becomes.
Es ist bevorzugt, dass sich das Trägermolekül in seinem Grundzustand befindet und bestrahlt wird, bevor es mit einem Zielmolekül mit einer zu spaltenden Bindung in Kontakt gebracht wird. Der Grundzustand eines Trägermoleküls erlaubt es, andere Energiezustände des Trägermoleküls zu erreichen, die die Aktivierungsenergie speichern können und diese Energie auf ein Zielmolekül übertragen können. Selbstverständlich umfasst der Umfang der Erfindung Moleküle, die einen Singulett- oder einen Triplettgrundzustand haben.It is preferred that the carrier molecule is in its Ground state and is irradiated before it targets a target is brought into contact to cleave bond. The basic state of a carrier molecule allowed it, other energy states of the carrier molecule to reach which can store the activation energy and this energy on can transfer a target molecule. Includes, of course the scope of the invention molecules that have a singlet or triplet ground state.
In einer bevorzugten Ausführungsform der Erfindung befindet sich das Trägermolekül nach der Bestrahlung in einem angeregten Zustand. Normalerweise hat der angeregte Zustand eine Lebensdauer des angeregten Zustands, die lang genug ist, um den Transfer durch den Raum oder über einen direkten physikalischen Kontakt des angeregten Trägermoleküls zu einem potentiellen Zielmolekül zu ermöglichen. Aus dem Vorstehenden ist es offensichtlich, dass Trägermoleküle einen angeregten Singulett- oder Triplettzustand haben. Es ist ebenfalls aus dem Vorstehenden offensichtlich, dass der Begriff „angeregter Zustand" jeden angeregten Zustand eines Trägermoleküls bezeichnet, das heißt umfassend seinen ersten, zweiten, usw. angeregten Zustand.In a preferred embodiment According to the invention, the carrier molecule is in one after the irradiation excited state. Usually the excited state has one Lifetime of the excited state that is long enough to reach the Transfer across the room or across a direct physical contact of the excited carrier molecule with one potential target molecule to enable. From the above, it is obvious that carrier molecules unite have excited singlet or triplet state. It is also from the foregoing, it is obvious that the term “more excited State "denotes any excited state of a carrier molecule, that is to say comprehensively its first, second, etc. excited state.
Es ist besonders bevorzugt, dass die Energiedifferenz zwischen dem Grundzustand und einem angeregten Zustand des Trägermoleküls mindestens gleich oder größer ist, als die Aktivierungsenergie zur Bindungsspaltung, wodurch zumindest eine minimale Energie zur Durchführung der Reaktion geliefert wird.It is particularly preferred that the energy difference between the ground state and an excited one Condition of the carrier molecule at least the same or larger, than the activation energy for bond cleavage, which at least minimal energy to carry out the reaction is delivered.
In einer weiteren besonders bevorzugten Ausführungsform umfasst das erfindungsgemäße Verfahren folgende Schritte:
- a) Aktivieren des Trägermoleküls in einem Aktivierungsbereich durch Bestrahlen des Trägermoleküls,
- b) Transportieren des aktivierten Trägermoleküls aus Schritt a) durch den Raum zu einem Austauschbereich, der ein Zielmolekül umfasst,
- c) Übertragen der Aktivierungsenergie des Trägermoleküls auf ein Zielmolekül in dem Austauschbereich.
- a) activating the carrier molecule in an activation region by irradiating the carrier molecule,
- b) transporting the activated carrier molecule from step a) through the space to an exchange region which comprises a target molecule,
- c) transferring the activation energy of the carrier molecule to a target molecule in the exchange region.
Das erfindungsgemäße Verfahren erlaubt daher den selektiven Transport der an einem anderen Ort erzeugten notwendigen Aktivierungsenergie zu einem Bereich, wo ausgewählte Zielmoleküle mit zu spaltenden Bindungen für die Reaktion aktiviert werden, das heißt für eine Bindungsspaltung. Daher geht die Aktivierungsenergie nicht verloren und das Vorhandensein ungewollter Nebenprodukte ist dramatisch verringert.The method according to the invention therefore allows the selective transport of the necessary generated at another location Activation energy to an area where selected target molecules with too cleaving bonds for the reaction can be activated, that is, for a bond cleavage. Therefore goes the activation energy is not lost and the presence of unwanted ones By-products are reduced dramatically.
Der Begriff „Übertragen" in Schritt c) umfasst jede Methode, durch die ein Energietransfer von einem Molekül zu einem anderen stattfinden kann. Typischerweise ist der direkte physikalische Kontakt von Molekül zu Molekül ausreichend. Andere Übertragungsarten sind „durch den Raum", zum Beispiel in Lösung, Dispersion, Festkörper usw. über Vibrationstransfer, wenn die Moleküle räumlich nah genug zusammen sind.The term "transfer" in step c) includes any method by which energy transfer from one molecule to another can take place. Typically, direct physical contact from molecule to molecule is sufficient. Other types of transfer are "through space", for example in solution, dispersion, solids etc. via vibration transfer if the molecules are close enough together in space.
Es ist bevorzugt, dass die Anzahl der zu aktivierenden Trägermoleküle frei auswählbar ist. Dies erlaubt ebenfalls die spezifische Aktivierung von nur wenigen oder einer großen Anzahl Zielmolekülen, die zur Reaktion gebracht werden sollen.It is preferred that the number of the carrier molecules to be activated selectable is. This also allows the specific activation of only a few or a big one Number of target molecules, that are to be made to react.
Es ist weiterhin bevorzugt, dass der Transfer des Trägermoleküls zu dem Austauschbereich räumlich gesteuert werden kann. Dies ermöglicht, dass nur wenige Moleküle in einem ausgewählten Austauschbereich aktiviert werden, ohne dass Moleküle in benachbarten Spots oder in einem zu dem ausgewählten Austauschbereich benachbarten Bereich betroffen werden.It is further preferred that the transfer of the carrier molecule to the Exchange area spatially can be controlled. This makes possible, that only a few molecules in a selected one Exchange area can be activated without molecules in neighboring Spots or in a neighboring to the selected exchange area Area to be affected.
Die der vorliegenden Erfindung zugrunde liegende Aufgabe wird weiterhin durch eine Vorrichtung für den intermolekularen Transfer der Aktivierungsenergie zur Bindungsspaltung von Trägermolekülen zu Zielmolekülen, die eine zu spaltende Bindung aufweisen, gelöst, umfassend einen Vorratsbehälter, der die Trägermoleküle umfasst, Mittel, um die Trägermoleküle zum Aktivierungsbereich zu liefern; Aktivierungsinittel und einen das Zielmolekül umfassenden Austauschbereich.The basis of the present invention lying task is further achieved by a device for the intermolecular Transfer of the activation energy for the bond cleavage of carrier molecules to target molecules that have a bond to be split, solved, comprising a storage container which the Carrier molecules includes, agents, around the carrier molecules to the activation area to deliver; Activation agent and an exchange area comprising the target molecule.
Das erfindungsgemäße Verfahren erlaubt einen einfachen Geräteaufbau, der nicht sehr kompliziert ist und ermöglicht, den selektiven Transfer von Trägermolekülen, umfassend die gespeicherte Aktivierungsenergie, zu ausgewählten Spots eines Aktivierungsbereichs, ohne die Gefahr der Aktivierung anderer Bereiche in dem Austauschbereich.The method according to the invention allows one simple device construction, which is not very complicated and enables selective transfer of carrier molecules comprising the stored activation energy, to selected spots of an activation area, without the risk of activating other areas in the exchange area.
Vorteilhafterweise umfasst der Austauschbereich einen festen Träger. In einer anderen bevorzugten Ausführungsform ist der Austauschbereich ein Reaktionsbehälter. Der feste Träger oder der Reaktionsbehälter ist entweder für UV/VIS Strahlung durchlässig oder undurchlässig oder er kann transluzent sein.The exchange area advantageously comprises a solid support. In another preferred embodiment, the exchange area a reaction vessel. The solid carrier or the reaction vessel is for either UV / VIS radiation permeable or impermeable or it can be translucent.
In einer anderen bevorzugten Ausführungsform ist der feste Träger für UV/VIS-Licht undurchlässig. Dies ermöglicht eine Vergrößerung der Materialauswahl zur Herstellung des festen Trägers, mit dem weiteren Vorteil, dass ebenfalls Zielmoleküle auf dem Träger angebracht werden können, die sich durch Wärme bei direkter Bestrahlung zur Initiierung einer photochemischen Reaktion zersetzen würden, weil lichtundurchlässige Substrate sich bei direkter Bestrahlung erwärmen.In another preferred embodiment is the solid carrier for UV / VIS light impermeable. this makes possible an enlargement of the Material selection for the production of the solid support, with the further advantage that also target molecules on the carrier can be attached which is characterized by heat with direct irradiation to initiate a photochemical reaction would decompose because opaque Substrates heat up when exposed to direct radiation.
Es ist besonders bevorzugt, dass der feste Träger in einer Richtung beweglich ist, wodurch die genaue Auswahl einzelner Spots möglich ist, die entlang dieser Richtung auf dem festen Träger Zielmoleküle enthalten, zu denen Trägermoleküle geliefert oder zugeführt werden sollen.It is particularly preferred that the solid carrier is movable in one direction, making the precise selection of individual Spots possible which contain target molecules along this direction on the solid support, to which carrier molecules are delivered or supplied should be.
In einer weiteren bevorzugten Ausführungsform umfasst der Träger ein Array räumlich getrennter Bereiche, die die Zielmoleküle umfassen, wodurch ein gleichzeitiger Aufbau großer Molekülbibliotheken ermöglicht wird.In a further preferred embodiment includes the carrier an array spatially separate regions that encompass the target molecules, creating a simultaneous Building big molecule libraries allows becomes.
Es ist vorteilhaft, dass der Aktivierungsbereich oberhalb des Austauschbereichs angeordnet ist, wodurch die Nutzung von Schwerkraft für den Transfer der aktivierten Trägermoleküle zu dem Austauschbereich ermöglicht wird.It is advantageous that the activation area is located above the exchange area, making the use of gravity for the transfer of the activated carrier molecules to the Exchange area enabled becomes.
In einer besonders bevorzugten Ausführungsform umfasst der Aktivierungsbereich ein elektromagnetisches Feld zur Aktivierung der Trägermoleküle, das normalerweise einfach zu erzeugen ist.In a particularly preferred embodiment the activation area comprises an electromagnetic field Activation of the carrier molecules, the is usually easy to create.
In einer weiteren bevorzugten Ausführungsform umfasst die Vorrichtung Transportmittel, die oberhalb des Aktivierungsbereichs angeordnet sind, um die Trägermoleküle zu dem Aktivierungsbereich zu liefern, wodurch ebenfalls die Schwerkraft für den Transfer der Trägermoleküle verwendet wird, ohne dass ein komplizierter Aufbau notwendig ist.In a further preferred embodiment the device comprises means of transport located above the activation area are arranged to support the carrier molecules Activation area to deliver, which also reduces gravity for the transfer of the carrier molecules used without a complicated structure.
Vorteilhafterweise sind die Transportmittel in einer Richtung beweglich, vorzugsweise senkrecht zu der Bewegungsrichtung des festen Trägers, wodurch zwei weitere Freiheitsgrade bei der Auswahl eines einzelnen Spots auf dem festen Träger hinzukommen. Da die Bewegungsrichtungen des Austauschbereichs und der Transportmittel zueinander orthogonal sind, kann jeder gewünschte einzelne Spot auf dem festen Träger ausgewählt werden und individuell mit spezifischen und ausgewählten Mengen und/oder Volumina der Trägermoleküle beliefert werden.The means of transport are advantageous movable in one direction, preferably perpendicular to the direction of movement the solid support, giving two more degrees of freedom when choosing a single one Spots on the solid support added. Because the directions of movement of the exchange area and If the means of transport are orthogonal to each other, each desired individual spot can be on the solid support selected be and individually with specific and selected quantities and / or volumes of the carrier molecules are supplied.
Die Aufgabe der vorliegenden Erfindung wird weiterhin durch ein Verfahren zur Ausführung der lichtgesteuerten Synthese in Richtung 5' nach 3' oder 3' nach 5' eines Nukleinsäurederivats gelöst, umfassend die Reaktion ausgewählter Nukleoside und/oder Nukleotide unter geeigneten Reaktionsbedingungen, die geeignete photolabile Schutzgruppen an ihrer 3' oder 5' O-Position aufweisen, dadurch gekennzeichnet, dass ein ausgewähltes Trägermolekül einen Aktivierungsbereich passiert, der ein elektromagnetisches Feld umfasst, bevor es in einen Bereich transportiert wird, der ein geeignetes Nukleosid und/oder Nukleotid mit einer photolabilen funktionellen Gruppe umfasst.The object of the present invention is further controlled by a method of executing the light Synthesis in the 5 'to 3' or 3 'to 5' direction of a nucleic acid derivative solved, comprehensively the reaction of selected Nucleosides and / or nucleotides under suitable reaction conditions, the appropriate photolabile protecting groups at their 3 'or 5' O position have, characterized in that a selected carrier molecule a Happens activation area that includes an electromagnetic field before it is transported to an area that is a suitable one Nucleoside and / or nucleotide with a photolabile functional Group includes.
Das erfindungsgemäße Verfahren erlaubt die selektive Schutzgruppenentfernung von Nukleosiden und/oder Nukleotiden, in dem nur eine ausgewählte Anzahl von Trägermolekülen zu den ausgewählten Nukleosiden und/oder Nukleotiden transportiert wird, um die Kettenverlängerungsreaktionen nur in ausgewählten Bereichen durchzuführen.The inventive method allows the selective Deprotection of nucleosides and / or nucleotides, in which only a selected one Number of carrier molecules to the chosen Nucleosides and / or nucleotides is transported to the chain extension reactions only in selected Areas.
Vorteilhafterweise wird das elektromagnetische Feld, das temporär oder stationär sein kann, von einer Laserquelle erzeugt. Laserquellen sind wohlbekannt und leicht erhältlich, sie können große Energiemengen innerhalb eines ausgewählten und in der Ausdehnung begrenzten Raumes zur Verfügung stellen, sie sind leicht zu bedienen und der erfindungsgemäße Aufbau erfordert keine Hochleistungsoptik und kann daher preiswert und miniaturisierbar sein. Laserlicht stellt eine Quelle von kohärentem, nicht streuendem monochromatischem Licht zur Verfügung im Vergleich zu beispielsweise Licht, das von üblichen polychromatischen, dem Stand der Technik entsprechenden Hg-Lampen erzeugt wird, deren Licht durch einen komplizierten apparativen Aufbau kohärent gemacht werden muss.The electromagnetic field, which can be temporary or stationary, is advantageously generated by a laser source. Laser sources are well known and readily available, they can provide large amounts of energy within a selected and limited space, they are easy to use and the construction according to the invention does not require high-performance optics and can therefore be inexpensive and miniaturized. Laser light provides a source of coherent, non-scattering monochromatic light is available compared to, for example, light generated by conventional polychromatic, state-of-the-art mercury lamps, the light of which has to be made coherent by means of a complicated apparatus structure.
Es ist bevorzugt, dass das Trägermolekül von seinem Grundzustand in einen angeregten Zustand wechselt, wenn es das elektromagnetische Feld passiert und dass die Lebensdauer seines angeregten Zustands mehr als 0,5 ms beträgt, um die Aktivierungsenergie ohne irgendeinen Energieverlust von dem Aktivierungsbereich in den Austauschbereich zu transportieren. Der Wechsel kann zum Beispiel von einem Singulett-Grundzustand in einen angeregten Triplettzustand oder von einem Triplett-Grundzustand in einen angeregten Singulettzustand erfolgen.It is preferred that the carrier molecule be of its Ground state changes to an excited state when there is the electromagnetic field happens and that the lifespan of its excited state more than 0.5 ms, around the activation energy without any loss of energy from that Transport the activation area to the exchange area. The For example, a change from a singlet ground state to one excited triplet state or from a triplet ground state into an excited singlet state.
Für den Fachmann ist es offensichtlich, dass der Umfang der Erfindung nicht nur die vorstehend erwähnten Merkmale umfasst, sonders ebenfalls Kombinationen davon und dass der Umfang der Erfindung ebenfalls jedes einzelne Merkmal in Bezug auf die vorliegend beschriebene Erfindung umfasst.For it will be apparent to those skilled in the art that the scope of the invention not just those mentioned above Features includes, especially combinations of these and that the scope of the invention also relates to each and every feature the invention described herein comprises.
Die Erfindung wird weiterhin in der
nachstehenden Beschreibung bevorzugter Ausführungsformen unter Bezugnahme
auf
Der Chip 101 stellt den erfindungsgemäßen Austauschbereich
dar und zeigt ein zwei- oder dreidimensionales Array von Spots
Typische Zielmoleküle umfassen, sind aber nicht beschränkt auf geschützte oder ungeschützte Nukleoside oder Nukleotide, die 2 bis 20 Nukleotide umfassen, Aminosäuren und ihre Derivate, Oligo- (bestehend aus 2–9 Aminosäuren), Poly- (bestehend aus 10–100 Aminosäuren) und Makropeptide (bestehend aus mehr als 100 Aminosäuren), Kohlenwasserstoffe und ihre Derivate, Proteine, usw.Typical target molecules include are not limited on protected or unprotected nucleosides or nucleotides comprising 2 to 20 nucleotides, amino acids and their derivatives, oligo- (consisting of 2-9 amino acids), poly- (consisting of 10-100 Amino acids) and macropeptides (consisting of more than 100 amino acids), hydrocarbons and their derivatives, proteins, etc.
Das Array umfasst eine frei wählbare geometrische Anordnung, üblicherweise mit zueinander orthogonal angeordneten Linien, die aus kleinen Spots oder zwei- oder dreidimensionalen Mikroobjekten bestehen. Die Punkte. können ebenfalls poröse Strukturen, wie zum Beispiel Zeolithe, Monoröhrchen, Silikone, Siloxane, usw. umfassen.The array includes a freely selectable geometric Arrangement, usually with lines arranged orthogonally to each other, consisting of small spots or two- or three-dimensional micro-objects exist. The points. can also porous Structures such as zeolites, monotubes, silicones, siloxanes, etc. include.
Ebenso liegt jede andere geometrische Anordnung im Rahmen der Erfindung.Likewise, every other geometric Arrangement within the scope of the invention.
Der Chip
Oberhalb des Aktivierungsbereichs
Der Druckerkopf
Der Druckerkopf
Auch eine Vielzahl von Druckerköpfen
Der Druckerkopf
Die Verbindung
Die Trägermoleküle können entweder in Lösung, in
Reinform oder in der Form einer Suspension oder einer Dispersion
innerhalb des Vorratsbehälters
Repräsentative, nicht einschränkende Beispiele erfindungsgemäßer Trägermoleküle umfassen Acridon, Xanthon, Thioxanthon, Benzol, Naphthaline und ihre substituierten oder nicht-substituierten Derivate, beispielsweise N-Methylacridon, 2-Ethylthioxanthon, 2-Anilinonaphthalin, Naphtho-[1,2-c][1,2,5]-thiadiazol, Benzo[b]-fluoren, 5,7-Dimethoxy-3-thionylcumarin, 1,2-Cycloheptandion, 3-Acetyl-6-bromcumarin, 2-Brom-9-acridinon, 4,4'-Dibenzylbiphenyl, 2,6-Dithiocoffein, 1,4-Dibromnaphthalin, Dibenzo-[fg,op]-naphthalin, 10-Phenyl-9-acridinon, 2-Methyl-5-nitroimidazol-1-ethanol, 1-(2-Naphthoyl)-aziridin, 9-(2-Naphthoyl)-carbazol, 4,6'-Diamino-2-phenylbenzooxazol, p-Thiophenyl, 3-Acetylphenanthren, Dinaphtho-[1, 2-b:2',1'-]-thiophen, (E)-Piperylen, β-Methyl-(E)styrol, 2-Phenylbenzothiazol, Chinoxalin, 9,9'-Biphenantryl, Naphtho-[1,2-c][1,2,5]oxabiazol, Phenothiazin, 2-Ethoxynaphthalin, 9-Phenyl-9-stibafluoren, 9,10-Antrachinon, 4,4'-Dichlordiphenyl. Andere geeignete Verbindungen sind in S. L. Murov, I. Carmichael und G.L. Hug, Handbook of Photochemistry, Marcel Dekker, Inc., New York 1993 offenbart.Representative, non-limiting examples Carrier molecules according to the invention include acridone, Xanthone, thioxanthone, benzene, naphthalenes and their substituted or unsubstituted derivatives, for example N-methylacridone, 2-ethylthioxanthone, 2-anilinonaphthalene, Naphtho [1,2-c] [1,2,5] thiadiazole, benzo [b] fluorene, 5,7-dimethoxy-3-thionylcoumarin, 1,2-cycloheptanedione, 3-acetyl-6-bromo-coumarin, 2-bromo-9-acridinone, 4,4'-dibenzylbiphenyl, 2,6-dithiocaffeine, 1,4-dibromonaphthalene, dibenzo [fg, op] naphthalene, 10-phenyl-9-acridinone, 2-methyl-5-nitroimidazole-1-ethanol, 1- (2-naphthoyl) aziridine, 9- (2-naphthoyl) carbazole, 4,6'-diamino-2-phenylbenzooxazole, p-thiophenyl, 3-acetylphenanthrene, Dinaphtho- [1, 2-b: 2 ', 1' -] - thiophene, (E) -piperylene, β-methyl- (E) styrene, 2-phenylbenzothiazole, quinoxaline, 9,9'-biphenantryl, naphtho- [1,2-c] [1,2,5] oxabiazole, Phenothiazine, 2-ethoxynaphthalene, 9-phenyl-9-stibafluorene, 9,10-antrachinone, 4,4'-dichlorodiphenyl. Other suitable compounds are in S. L. Murov, I. Carmichael and G.L. Hug, Handbook of Photochemistry, Marcel Dekker, Inc., New York 1993.
Aus den Auslassmitteln
Die Energie, die in dem Molekül in seinem angeregten
Zustand „gespeichert"
ist, zum Beispiel in seinem Triplett- oder Singulettzustand, ist
mindestens gleich oder größer als
die für
die Bindungsspaltung in den Zielmolekülen, die in den Spots
Beim Passieren des Feldes elektromagnetischer
Strahlung
Die Zeitdauer für das Entfernen der Schutzgruppe, das heißt für das Spalten der Bindung zwischen der Schutzgruppe und dem restlichen Nukleinsäurederivat, hängt von der Art des Trägermoleküls und des Zielmoleküls, den verwendeten Lösungsmitteln, der Länge des Transportweges des Trägermoleküls in seinem angeregten Zustand und der Reaktionsatmosphäre ab (ein Quenchen der angeregten Trägermoleküle wird recht häufig bei der Verwendung einer Sauerstoffatmosphäre beobachtet, in Abhängigkeit von der Art des Trägermoleküls, des Lösungsmittels und dem Sauerstoffgehalt). In einer weiteren Ausführungsform der Erfindung enthalten die Zielmoleküle funktionelle Gruppen, die beim Kontakt mit den Trägermolekülen in-situ eine Säure bilden, wodurch säureempfindliche Schutzgruppen abgespalten werden, die ebenfalls in den Zielmolekülen vorhanden sein können.The amount of time to remove the protecting group, this means for the Cleaving the bond between the protecting group and the rest Nucleic acid derivative, depends on the type of carrier molecule and Target molecule, the solvents used, the length the transport path of the carrier molecule in its excited state and the reaction atmosphere (a quenching of the excited carrier molecules quite often observed when using an oxygen atmosphere, depending on the type of carrier molecule, the solvent and the oxygen content). In another embodiment of the invention, the target molecules contain functional groups that on contact with the carrier molecules in-situ an acid form, making acid sensitive Protective groups are split off, which are also present in the target molecules could be.
Das erfindungsgemäße Verfahren in Kombination
mit der erfindungsgemäßen Vorrichtung
erlaubt den Aufbau ausgewählter
Oligonukleotidketten nur auf den ausgewählten Spots
Im Vergleich zu einer kontrollierten Lichtzufuhr in üblichen photochemischen Vorrichtungen sind keine optischen Vorrichtungen und Anordnungen notwendig, wodurch kein durch die Optik verursachter Energieverlust auftritt. Weiterhin erfordert dieser Aufbau keine photolithographischen Masken und ist uneingeschränkt für die Massenproduktion von Chips mit einem. flexiblen und individuellen Design geeignet.Compared to a controlled one Light supply in usual photochemical devices are not optical devices and arrangements necessary, whereby none caused by the optics Loss of energy occurs. Furthermore, this structure does not require photolithographic masks and is unrestricted for the mass production of Chips with one. flexible and individual design.
Der Aufbau ist ebenfalls für das Multiplexen durch
Strahlenteilung und zur Verwendung von Mehrkanal-Druckerkopfvorrichtungen
geeignet. Weiterhin bietet das erfindungsgemäße Verfahren in Kombination
mit der Vorrichtung den Vorteil, dass es keine Kreuzkopplungen zwischen
einzelnen Mikroorten, das heißt
Spots
Claims (27)
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AU2003255416A AU2003255416A1 (en) | 2002-08-09 | 2003-08-11 | Method and device for the intermolecular transport of bond cleavage activation energy through space |
PCT/EP2003/008897 WO2004016349A2 (en) | 2002-08-09 | 2003-08-11 | Method and device for the intermolecular transport of bond cleavage activation energy through space |
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US5472672A (en) * | 1993-10-22 | 1995-12-05 | The Board Of Trustees Of The Leland Stanford Junior University | Apparatus and method for polymer synthesis using arrays |
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JP2002210359A (en) * | 2001-01-16 | 2002-07-30 | Yyl:Kk | Device and method for decomposing chemical substance by using electromagnetic wave |
WO2003074542A2 (en) * | 2002-03-04 | 2003-09-12 | Universität Konstanz | A method for cleavage of labile functional groups from chemical compounds |
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2002
- 2002-08-09 DE DE2002137704 patent/DE10237704A1/en not_active Withdrawn
-
2003
- 2003-08-11 WO PCT/EP2003/008897 patent/WO2004016349A2/en not_active Application Discontinuation
- 2003-08-11 AU AU2003255416A patent/AU2003255416A1/en not_active Abandoned
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DE19960346A1 (en) * | 1998-12-14 | 2000-10-26 | Deutsches Krebsforsch | Applying materials to a support, useful for combinatorial synthesis of peptides, e.g. for diagnosis, by incorporating materials in meltable particles and delivery through a printer |
DE10011400A1 (en) * | 1999-03-11 | 2000-10-05 | Nigu Chemie Gmbh | Targeted photolytic deprotection of nucleoside derivatives, useful for synthesis of DNA chips, includes coating with a gel or viscous liquid before illumination |
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DE20210018U1 (en) * | 2002-03-04 | 2002-11-28 | Steiner, Ulrich, Prof. Dr., 78465 Konstanz | Chemical composition for the production of nucleic acid chips |
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Cited By (1)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
DE102014114545A1 (en) | 2014-10-07 | 2016-04-07 | Josef Stumbilich | Apparatus for activation energy generation, in particular by modifying the structure isometry of a substance by means of charge carrier displacement and quantum mechanical spin change |
Also Published As
Publication number | Publication date |
---|---|
AU2003255416A1 (en) | 2004-03-03 |
WO2004016349A3 (en) | 2004-04-22 |
AU2003255416A8 (en) | 2004-03-03 |
WO2004016349A2 (en) | 2004-02-26 |
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