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DE10200410A1 - New antisense oligonucleotide, useful for treatment of tumors, inhibits translation of mRNA from the pituitary-tumor transforming gene-1 - Google Patents

New antisense oligonucleotide, useful for treatment of tumors, inhibits translation of mRNA from the pituitary-tumor transforming gene-1

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DE10200410A1
DE10200410A1 DE2002100410 DE10200410A DE10200410A1 DE 10200410 A1 DE10200410 A1 DE 10200410A1 DE 2002100410 DE2002100410 DE 2002100410 DE 10200410 A DE10200410 A DE 10200410A DE 10200410 A1 DE10200410 A1 DE 10200410A1
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cells
mrna
antisense oligodeoxynucleotide
antisense
pttg
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Marc Roller
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    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N15/00Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
    • C12N15/09Recombinant DNA-technology
    • C12N15/11DNA or RNA fragments; Modified forms thereof; Non-coding nucleic acids having a biological activity
    • C12N15/113Non-coding nucleic acids modulating the expression of genes, e.g. antisense oligonucleotides; Antisense DNA or RNA; Triplex- forming oligonucleotides; Catalytic nucleic acids, e.g. ribozymes; Nucleic acids used in co-suppression or gene silencing
    • C12N15/1135Non-coding nucleic acids modulating the expression of genes, e.g. antisense oligonucleotides; Antisense DNA or RNA; Triplex- forming oligonucleotides; Catalytic nucleic acids, e.g. ribozymes; Nucleic acids used in co-suppression or gene silencing against oncogenes or tumor suppressor genes
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K38/00Medicinal preparations containing peptides
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    • C12N2310/00Structure or type of the nucleic acid
    • C12N2310/30Chemical structure
    • C12N2310/31Chemical structure of the backbone
    • C12N2310/315Phosphorothioates

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Abstract

Antisense oligonucleotide (AON) designed to inhibit translation of PTTG-1 (pituitary-tumor transforming gene-1) mRNA in human cells is new.

Description

Die vorliegende Erfindung betrifft drei Oligodesoxynukleotide (ODNs), mit welchen sich wirksam das Wachstum von mit Pituitary tumor transforming gene - 1 (PTTG) - Überexpression assoziierten Tumorzellen hemmen lässt. Insbesondere betrifft die Erfindung drei hochwirksame Antisense-Oligodesoxynukleotide, mit welchen die Translation von PTTG-mRNA in Tumorzellen inhibiert werden kann. The present invention relates to three oligodeoxynucleotides (ODNs) with which effective the growth of with pituitary tumor transforming gene - 1 (PTTG) - Inhibits overexpression associated tumor cells. In particular, the Invention three highly effective antisense oligodeoxynucleotides, with which the Translation of PTTG mRNA in tumor cells can be inhibited.

PTTG-1 Überexpression ist für eine Reihe von Tumoren und Tumorzellinien beschrieben. PTTG wurde erstmals in Ratten-Hypophysentumoren als überexpremiert beschrieben. Eine Überexpression mittels stabiler Transfektion in NIH-3T3 Mausfibroblasten führt zur Zelltransformation in vitro und zur Formation von soliden Tumoren in vivo. PTTG-1 overexpression is for a number of tumors and tumor cell lines described. PTTG was first overexpressed in rat pituitary tumors described. Overexpression using stable transfection in NIH-3T3 Mouse fibroblasts lead to cell transformation in vitro and the formation of solid ones Tumors in vivo.

PTTG hat unter anderem eine essentielle Funktion im Rahmen des Zellzyklus als Securin. Securin verhindert eine frühzeitige Trennung der Schwesterchromatiden durch die Inhibierung der Separase bis zur eigenen Degradierung durch den Anaphasepromoting complex (APC) zu beginn der Anaphase. Among other things, PTTG has an essential function in the context of the cell cycle as Securin. Securin prevents early separation of the sister chromatids the inhibition of the separase up to its own degradation by the Anaphasepromoting complex (APC) at the beginning of anaphase.

Bereits seit längerem ist es bekannt, die Translation von mRNA durch komplementär zur Sequenz einer mRNA ausgerichteter antisense-ODNs zu inhibieren. Neueren Datums ist der Einsatz einzelsträngiger Nukleinsäuren für die selektive Blockade der Genexpression von Transkriptionsfaktoren. Damit derartige ODNs aber selektiver eingesetzt werden können, müssen sie zuvor modifiziert werden, um gegenüber enzymatischem Abbau stabiler zu sein. Hier sind eine Reihe von Modifikationen bekannt, wie Phosphotriester-, Phosphoroamid-, Methylphosphonat-, Phosphorothioat- und Peptidnukleotidsäurebindungen bekannt. Wegen seiner erhöhten Stabilität, guter Löslichkeit und der Aktivierung von RNAse H Aktivität sind Phosphorothioate bevorzugte Kandidaten für eine spezifische Inhibierung der Genexpression. It has been known for a long time to complement the translation of mRNA by Inhibit sequence of an mRNA-targeted antisense ODNs. More recent date is the use of single stranded nucleic acids for the selective blocking of Gene expression of transcription factors. This makes such ODNs more selective can be used, they must be modified beforehand in order enzymatic degradation to be more stable. Here are a number of modifications known such as phosphotriester, phosphoroamide, methylphosphonate, phosphorothioate and peptide nucleotide acid linkages are known. Because of its increased stability, good Solubility and activation of RNAse H activity are preferred for phosphorothioates Candidates for specific inhibition of gene expression.

Der vorliegenden Erfindung liegt daher die Aufgabe zugrunde ODN-Sequenzen zu finden, die hochwirksam die Translation von PTTG mRNA inhibieren. Erfindungsgemäß wird die Aufgabe durch die in den folgenden Formeln wiedergegebenen modifizierten Oligodesoxynukleotide aus 20 Nukleotiden (20-mer) gelöst:
5'-TAG CAA CAT ACC AAA CTT TC-3' (Hannah-02)
5'-TAT CAA CAT AGA TCA GAG TA-3' (Hannah-03)
5'-TCA ACA TCC AGG GTC GAC AG-3' (Hannah-05)
The object of the present invention is therefore to find ODN sequences which highly effectively inhibit the translation of PTTG mRNA. According to the invention, the object is achieved by the modified oligodeoxynucleotides of 20 nucleotides (20-mer) shown in the following formulas:
5'-DAY CAA CAT ACC AAA CTT TC-3 '(Hannah-02)
5'-TAT CAA CAT AGA TCA GAG TA-3 '(Hannah-03)
5'-TCA ACA TCC AGG GTC GAC AG-3 '(Hannah-05)

Als Modifikationen gegen den enzymatischen Abbau kommen prinzipiell die im Stand der Technik bekannten Substituenten, entweder einzeln oder in Kombination, in Frage. Bevorzugt kommen die oben genannten Substituenten zum Einsatz. Die bevorzugte Modifikation ist der Einbau von Phosphothioat. In den folgenden Untersuchungen wurden die Antisense-ODNs in Form ihrer Phosphothioate eingesetzt. As modifications against the enzymatic degradation there are in principle those in the stand substituents known in the art, either individually or in combination. The above-mentioned substituents are preferably used. The preferred Modification is the incorporation of phosphothioate. In the following investigations the antisense ODNs were used in the form of their phosphothioates.

OligodesoxynukleotidsynthesenOligodesoxynukleotidsynthesen

Die Herstellung der Phosphorothioat-modifizierten Hannah-02, Hannah-03 und Hannah- 05 erfolgte mit einem automatischen DANN-Synthesizer (Perseptive 8909; BioSpring GmbH; Frankfurt) nach dem Stand der Technik bekannten Verfahren. Die Deprotektion der Oligonukleotide wurde mit konzentriertem Ammoniak über einen Zeitraum von 16 Stunden bei Raumtemperatur durchgeführt. The production of the phosphorothioate-modified Hannah-02, Hannah-03 and Hannah- 05 was done with an automatic DANN synthesizer (Perseptive 8909; BioSpring GmbH; Frankfurt) according to methods known in the art. Deprotection the oligonucleotide was concentrated with ammonia over a period of 16 Hours at room temperature.

Behandlung menschlicher Krebszellinien mit Antisense-ODNsTreatment of human cancer cell lines with antisense ODNs

Die in Zellkultur verwendete menschliche Krebszellinie HeLa-S3 wurden von der American Type Cell Culture Collection (ATCC) erworben. 50.000 Zellen wurden in DMEM (Dulbecco's modifiziertem Eagle Medium) suspendiert, mit 10% hitzeinaktiviertem Kälberserum, Antibiotika und 2 mM L-Glutamin versetzte Zellen wurden in 6-Loch Platten ausgesät und bei 37°C in 5% CO2/95% Luftatmosphäre in einem befeuchteten Brutschrank wachsen gelassen. Am darauf folgenden Tag wurden die Zellen mit den jeweiligen, in sterilem deionisiertem Wasser für Zellkulturen gelösten ODNs in Gegenwart von Transfektionsreagenz (Oligofectamin) gemäß den Angaben des Herstellers inkubiert. Die Lebensfähigkeit der Zellen wurde mit der Trypanblau- Ausschlußmethode zu den angegebenen Zeitpunkten überprüft. The human cancer cell line HeLa-S3 used in cell culture was developed by the American Type Cell Culture Collection (ATCC) acquired. 50,000 cells were in DMEM (Dulbecco's modified Eagle Medium) suspended, with 10% heat-inactivated calf serum, antibiotics and 2 mM L-glutamine spiked cells were sown in 6-hole plates and at 37 ° C in 5% CO2 / 95% air atmosphere grown in a humidified incubator. The following day the cells with the respective, dissolved in sterile deionized water for cell cultures ODNs in the presence of transfection reagent (oligofectamine) according to the information incubated by the manufacturer. The viability of the cells was assessed with the trypan blue Exclusion method checked at the specified times.

RNA-Isolation, RT-PCRRNA isolation, RT-PCR

Die RNA der transfizierten Zellen wurde zu den angegebenen Zeitpunkten mittels RNAeasy-Mini Kit der Firma Qiagen isoliert. Die Qualität der RNA wurde vor Einsatz in der RT-PCR mittels Agarose-Formaldehyd-Gelelektrophorese und anschließender SybrGreen II Färbung überprüft. Nach anschließender Reverser Transkription der RNA wurde die erhaltene cDNA in einer PCR-Reaktion mit spezifischen Primern für PTTG-1 bzw. Glyceraledehyd-3-Phosphat-Dehydrogenase (GAPDH) durchgeführt (5'-ACC TTT GCT TCT CCC ACC TT-3' (PTTG sense), 5'-CAA ATA CAC ACA AAC TCT GAA GCA- 3' (PTTG antisense), 5'-GAT GAC ATC AAG AAG GTG GTG-3' (GAPDH sense), 5'- GCT GTA GCC AAA TTC GTT GTC-3' (GAPDH antisense). Die resultierenden PCR Produkte wurde mittels Agarosegelelektrophorese getrennt und anschließend mit SybrGreen I gefärbt. The RNA of the transfected cells was analyzed at the specified times RNAeasy mini kit from Qiagen isolated. The quality of the RNA was checked before use in the RT-PCR using agarose-formaldehyde gel electrophoresis and subsequent SybrGreen II staining checked. After subsequent reverse transcription of the RNA was obtained the cDNA in a PCR reaction with specific primers for PTTG-1 or glyceraledehyde-3-phosphate dehydrogenase (GAPDH) (5'-ACC TTT GCT TCT CCC ACC TT-3 '(PTTG sense), 5'-CAA ATA CAC ACA AAC TCT GAA GCA- 3 '(PTTG antisense), 5'-GAT GAC ATC AAG AAG GTG GTG-3' (GAPDH sense), 5'- GCT GTA GCC AAA TTC GTT GTC-3 '(GAPDH antisense). The resulting PCR Products were separated by means of agarose gel electrophoresis and then with SybrGreen I colored.

Westernblot AnalyseWestern blot analysis

Die Zellen wurden wie oben angegeben behandelt. Nach erfolgter inkubation wurde das zelluläre Protein mittels RIPA-Puffer (1 × PBS, 1% NP-40, 0,5% Natriumdesoxycholat, 0,1% SDS) isoliert. 20 µg zelluläres Protein wurde in mittels SDS-PAGE aufgetrennt. Die Proteine wurden geblottet und anschließend mit PTTG bzw. β-Actin spezifischen Antikörpern inkubiert und mittels Meerettich-Peroxidase konjugierten Sekundärantikörpern und Chemilumineszenz Reagenz visualisiert. The cells were treated as indicated above. After incubation, the cellular protein using RIPA buffer (1 × PBS, 1% NP-40, 0.5% sodium deoxycholate, 0.1% SDS) isolated. 20 µg of cellular protein was separated using SDS-PAGE. The Proteins were blotted and then specific with PTTG or β-actin Antibodies incubated and conjugated using horseradish peroxidase Secondary antibodies and chemiluminescent reagent visualized.

ErgebnisseResults

Zusätzlich zu den eingesetzten Oligodesoxynukleotiden wurde sowohl eine Sense als auch eine Transfektionsreagenzkontrolle eingesetzt. Im Verlauf der Experiment konnte kein signifikanter Unterschied zwischen den Kontrollen beobachtet werden. In addition to the oligodeoxynucleotides used, both a sense and a transfection reagent control is also used. In the course of the experiment no significant difference between controls was observed.

Das Dosisabhängige Verhalten der getesteten Oligodesoxynukleotidezeigt sich bereits nach einmaliger Anwendung. Das Ergebnis einer Konzentrationsreihe ist in Fig. 1 gezeigt. The dose-dependent behavior of the tested oligodeoxynucleotides is already evident after a single application. The result of a series of concentrations is shown in FIG. 1.

Wie in Fig. 2 dargestellt findet sich der gleiche Dosisabhängige Effekt ebenfalls auf Proteinlevel. As shown in Fig. 2, the same dose-dependent effect is also found on protein levels.

Zur Ermittlung des Anti-Proliferativen Effektes wurde die Zellen transfiziert und nach 24, 48 und 72 Stunden wurden die lebenden Zellen bestimmt. Hier zeigt sich ein hochsignifikanter Effekt. To determine the anti-proliferative effect, the cells were transfected and after 24, The living cells were determined for 48 and 72 hours. Here shows up highly significant effect.

Transfektionen in Mausfibroblasten zeigten keine vorbeschriebenen Effekte (Daten nicht gezeigt). Alle Daten sind exemplarisch für das Antisense-ODN Hannah-05 wiedergegeben. Transfections in mouse fibroblasts did not show the effects described above (data did not shown). All data are exemplary for the antisense ODN Hannah-05 played.

Claims (7)

1. Antisense-Oligodesoxynukleotid mit dem Ziel der Hemmung der Translation von PTTG-1 mRNA in humanen Zellen. 1. Antisense oligodeoxynucleotide with the aim of inhibiting the translation of PTTG-1 mRNA in human cells. 2. Antisense-Oligodesoxynukleotide zur Hemmung der PTTG-1 Expression in humanen Zellen, dadurch gekennzeichnet, dass die Sequenz 5'-TAG CAA CAT ACC AAA CTT TC-3' oder 5'-TAT CAA CAT AGA TCA GAG TA-3' oder 5'-TCA ACA TCC AGG GTC GAC AG-3', gegebenenfalls modifiziert gegen Enzymabbau, aufweist. 2. Antisense oligodeoxynucleotides for inhibiting PTTG-1 expression in human cells, characterized in that the sequence 5'-TAG CAA CAT ACC AAA CTT TC-3 'or 5'-TAT CAA CAT AGA TCA GAG TA-3' or 5'-TCA ACA TCC AGG GTC GAC AG-3 ', optionally modified against enzyme degradation, having. 3. Antisense-Oligodesoxynukleotid nach Anspruch 1 und 2, dadurch gekennzeichnet, dass es durch den Einbau von Phophotriester- und/oder Phosphoroamid- und/oder Methylphosphonat und/oder Phosphorothioat und/oder Peptidnukleinsäregruppen modifiziert ist. 3. Antisense oligodeoxynucleotide according to claim 1 and 2, characterized characterized that it is due to the incorporation of Phophotriester and / or Phosphoroamide and / or methyl phosphonate and / or phosphorothioate and / or Peptide nucleic acid groups is modified. 4. Antisense-Oligodesoxynukleotid nach Anspruch 3, dadurch gekennzeichnet, dass es ausschließlich mit Phosphorothioatgruppen modifiziert ist. 4. Antisense oligodeoxynucleotide according to claim 3, characterized in that it is only modified with phosphorothioate groups. 5. Antisense-Oligodesoxynukleotid nach einem der Ansprüche 1 bis 4, dadurch gekennzeichnet, dass es in Zellkulturen der menschlichen Krebszellinie HeLa-S3 eine Transfektionseffizienz von über 90% aufweist. 5. Antisense oligodeoxynucleotide according to one of claims 1 to 4, characterized characterized that it is in cell cultures of the human cancer cell line HeLa-S3 has a transfection efficiency of over 90%. 6. Antisense-Oligodesoxynukleotid nach einem der Ansprüche 1 bis 5, dadurch gekennzeichnet, dass nach einmaliger Anwendung an HeLa-S3 Zellen die mRNA Konzentration auf unter 10% einer Kontrolle senken lässt. 6. Antisense oligodeoxynucleotide according to one of claims 1 to 5, characterized characterized that after a single application to HeLa-S3 cells the mRNA Concentration can be reduced to below 10% of a control. 7. Antisense-Oligodesoxynukleotid nach einem der Ansprüche 1 bis 5, dadurch gekennzeichnet, dass nach Behandlung von HeLa-S3 Zellen sich die Zahl der lebensfähigen Zellen bis auf 30% oder weniger senken lässt. 7. Antisense oligodeoxynucleotide according to any one of claims 1 to 5, characterized characterized that after treatment of HeLa-S3 cells the number of viable cells down to 30% or less.
DE2002100410 2002-01-08 2002-01-08 New antisense oligonucleotide, useful for treatment of tumors, inhibits translation of mRNA from the pituitary-tumor transforming gene-1 Ceased DE10200410A1 (en)

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Cited By (2)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO2006088490A3 (en) * 2004-06-30 2007-03-29 Alnylam Pharmaceuticals Inc Oligonucleotides comprising a non-phosphate backbone linkage
US9227956B2 (en) 2013-04-17 2016-01-05 Pfizer Inc. Substituted amide compounds

Citations (1)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO2001087934A2 (en) * 2000-05-12 2001-11-22 Cedars-Sinai Medical Center Treatment of neoplasia/transformation using a pituitary tumor transforming gene carboxy terminal peptides

Patent Citations (1)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO2001087934A2 (en) * 2000-05-12 2001-11-22 Cedars-Sinai Medical Center Treatment of neoplasia/transformation using a pituitary tumor transforming gene carboxy terminal peptides

Cited By (6)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO2006088490A3 (en) * 2004-06-30 2007-03-29 Alnylam Pharmaceuticals Inc Oligonucleotides comprising a non-phosphate backbone linkage
US7615618B2 (en) 2004-06-30 2009-11-10 Alnylam Pharmaceuticals, Inc. Oligonucleotides comprising a non-phosphate backbone linkage
US7723512B2 (en) 2004-06-30 2010-05-25 Alnylam Pharmaceuticals Oligonucleotides comprising a non-phosphate backbone linkage
AU2005327517B2 (en) * 2004-06-30 2011-05-26 Alnylam Pharmaceuticals, Inc. Oligonucleotides comprising a non-phosphate backbone linkage
US8013136B2 (en) 2004-06-30 2011-09-06 Alnylam Pharmaceuticals, Inc. Oligonucleotides comprising a non-phosphate backbone linkage
US9227956B2 (en) 2013-04-17 2016-01-05 Pfizer Inc. Substituted amide compounds

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