CN1952664A - Application of surface fatty acid-binding protein E-FABP - Google Patents
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Abstract
Description
技术领域technical field
本发明属于生物技术领域,具体地说,本发明涉及一种表面脂肪酸结合蛋白E-FABP用作检测肝癌的蛋白质分子标记的应用。The invention belongs to the field of biotechnology, in particular, the invention relates to the application of a surface fatty acid binding protein E-FABP as a protein molecular marker for detecting liver cancer.
背景技术Background technique
肝癌是一种严重危害人类的疾病。西方发达国家肝癌的发病率较低,国际上对肝癌的基础研究仍较为薄弱,而我国是肝癌高发国家,发病率和死亡率呈现上升趋势,且发病年龄构成年轻化,每年用于肝癌治疗的医疗支出大为增加,肝癌成了严重危害我国人民生命财产安全的头号敌人,并且是影响社会经济发展的一个重要因素,加大力度进行我国肝癌的基础研究具有战略意义,而分离和鉴定新的肝癌相关基因是目前肝癌基础研究中的前沿课题。Liver cancer is a disease that seriously endangers human beings. The incidence of liver cancer in western developed countries is low, and the basic research on liver cancer in the world is still relatively weak. However, my country is a country with a high incidence of liver cancer, and the morbidity and mortality are on the rise, and the age of onset is younger. Medical expenses have increased greatly, and liver cancer has become the number one enemy that seriously endangers the safety of people's life and property in our country, and is an important factor affecting social and economic development. It is of strategic significance to intensify the basic research of liver cancer in my country, and to separate and identify new Liver cancer-related genes are a frontier topic in the basic research of liver cancer.
到目前为止,已有不下20种的基因异常表达被确定与肝癌的发生发展有关,但已确定的肝癌相关基因在肝癌中的异常表达率并不高,肝癌的发病机制至今仍未阐明,肝癌的早期诊断率仍有待提高。此外,传统的肝癌手术加化疗以及近年来配合使用的多种基因治疗方法仍没有明显提高肝癌患者的生存率,因而寻找新的肝癌相关基因尤其是肝癌高表达基因对于探讨肝癌的发病机制具有重要意义。So far, the abnormal expression of no less than 20 genes has been determined to be related to the occurrence and development of liver cancer, but the abnormal expression rate of the identified liver cancer-related genes in liver cancer is not high, and the pathogenesis of liver cancer has not yet been elucidated. The early diagnosis rate still needs to be improved. In addition, traditional liver cancer surgery plus chemotherapy and multiple gene therapy methods used in combination in recent years have not significantly improved the survival rate of liver cancer patients. Therefore, finding new liver cancer-related genes, especially genes highly expressed in liver cancer, is of great importance for exploring the pathogenesis of liver cancer. significance.
因此,为治疗和诊断目的研究和开发在肝癌中高表达的基因和/或蛋白具有重要意义。本领域迫切需要新的在肝癌中高表达的基因和/或蛋白。Therefore, it is of great significance to study and develop genes and/or proteins highly expressed in liver cancer for therapeutic and diagnostic purposes. There is an urgent need in the art for new genes and/or proteins that are highly expressed in liver cancer.
表面脂肪酸结合蛋白(Fatty acid-binding protein,epidermal;E-FABP;Psoriasis-associated fatty acid-binding protein homolog;PA-FABP;Fatty acid binding protein5;Psoriasis associated fatty acid binding protein homolog;Fatty acid binding protein 5,psoriasisassociated;Fatty acid binding protein,psoriasis associated)的Genebank登录号为gi|4557581,NCBI的登录号为NP_001435,Swissprot登录号为Q01469,IPI号为:IPI00007797.1。表面脂肪酸结合蛋白属于脂肪酸结合蛋白家族,脂肪酸结合蛋白(FABPs)是一种与长链脂肪酸有高度亲和特异性的蛋白,并且在细胞内对长链脂肪酸的转运起着关键性的作用。到目前为止,至少发现了三种不同的脂肪酸结合蛋白:B-FABP;E-FABP;H-FABP。我们这里所提到的表面脂肪酸结合蛋白就是其中的一种,除了以上所说的功能外,该蛋白被认为在角质细胞的分化过程中发挥着作用(J.Neural.Transm.Suppl.2003;(67):225-34)。Fatty acid-binding protein, epidermal; E-FABP; Psoriasis-associated fatty acid-binding protein homolog; PA-FABP; Fatty acid binding protein5; Psoriasis associated fatty acid binding protein homolog; Fatty acid binding protein 5, psoriasis associated; Fatty acid binding protein, psoriasis associated) Genebank accession number is gi|4557581, NCBI accession number is NP_001435, Swissprot accession number is Q01469, IPI number is: IPI00007797.1. Surface fatty acid-binding proteins belong to the family of fatty acid-binding proteins. Fatty acid-binding proteins (FABPs) are proteins with high affinity and specificity for long-chain fatty acids, and play a key role in the transport of long-chain fatty acids in cells. So far, at least three different fatty acid binding proteins have been discovered: B-FABP; E-FABP; H-FABP. The surface fatty acid binding protein we mentioned here is one of them. In addition to the functions mentioned above, this protein is considered to play a role in the differentiation process of keratinocytes (J.Neural.Transm.Suppl.2003;( 67): 225-34).
表面脂肪酸结合蛋白(Fatty acid-binding protein,epidermal;E-FABP)最初被发现在表皮中阻止水分的通透性起着重要的作用,对表型为E-FABP缺陷的小鼠进行研究发现,E-FABP缺陷型小鼠的组织学水平和生长都是正常的,而肝脏中H-FABP的表达量大大升高(Mo1.Cell Biochem.2002 Oct;239(1-2):83-6)。这表明H-FABP可能对E-FABP有补充的作用。对E-FABP缺陷型的纯合子小鼠进一步研究表明E-FABP在皮肤对水分通透性的调节中确实起着关键性的作用。Fatty acid-binding protein (epidermal; E-FABP) was originally found to play an important role in preventing water permeability in the epidermis. Studies on mice with a phenotype of E-FABP deficiency found that, The histological level and growth of E-FABP-deficient mice are normal, while the expression of H-FABP in the liver is greatly increased (Mo1. Cell Biochem. 2002 Oct; 239(1-2): 83-6) . This suggests that H-FABP may have a complementary effect on E-FABP. Further studies on E-FABP-deficient homozygous mice showed that E-FABP does play a key role in the regulation of skin water permeability.
最近有工作对癌症(主要是脑癌患者)患者的血清进行自身抗体抗原反应研究发现,20%以上的癌症患者的血清中检测到了E-FABP的高表达,而在对正常人的血清中,只有2%的人检测到了E-FABP,该数据表明E-FABP可能在癌症患者的血清中高表达(Biochem.Biophys.Res.Commun.2004 Oct 8;323(1):156-62)。Recent work has carried out autoantibody antigen reaction research on the serum of patients with cancer (mainly brain cancer patients) and found that the high expression of E-FABP has been detected in the serum of more than 20% cancer patients, while in the serum of normal people, Only 2% of people have detected E-FABP, which indicates that E-FABP may be highly expressed in the serum of cancer patients (Biochem. Biophys. Res. Commun. 2004 Oct 8; 323(1): 156-62).
但是到目前为止,现有技术中未见有关于表面脂肪酸结合蛋白E-FABP与肝细胞癌的相关性的报道。But so far, there is no report on the correlation between surface fatty acid binding protein E-FABP and hepatocellular carcinoma in the prior art.
发明内容Contents of the invention
通过筛选在肝细胞癌癌组织以及肝细胞癌癌旁组织中差异表达的蛋白质,本申请的发明人找到了一种在肝细胞癌的癌组织和癌旁组织中存在差异表达的蛋白质(在癌组织中上调表达),经质谱鉴定为表面脂肪酸结合蛋白E-FABP。进一步的免疫印迹实验证实,表面脂肪酸结合蛋白E-FABP的确在肝细胞癌的癌组织与癌旁组织中存在差异表达(在癌组织中上调表达)。By screening proteins differentially expressed in hepatocellular carcinoma tissues and paracancerous tissues of hepatocellular carcinoma, the inventors of the present application have found a protein that is differentially expressed in cancer tissues and paracancerous tissues of hepatocellular carcinoma (in cancer tissues) Up-regulated expression in tissues), which was identified as surface fatty acid binding protein E-FABP by mass spectrometry. Further immunoblotting experiments confirmed that the surface fatty acid binding protein E-FABP was indeed differentially expressed in the cancer tissues and adjacent tissues of HCC (upregulated expression in cancer tissues).
基于表面脂肪酸结合蛋白E-FABP与肝细胞癌的这种相关性,以该蛋白作为一个蛋白质分子标记对其表达量进行检测可以用于检测肝癌。Based on the correlation between surface fatty acid binding protein E-FABP and hepatocellular carcinoma, using this protein as a protein molecular marker to detect its expression level can be used to detect liver cancer.
因此,本发明的首要目的即在于提供一种表面脂肪酸结合蛋白E-FABP用作检测肝癌的蛋白质分子标记的应用。Therefore, the primary purpose of the present invention is to provide an application of a surface fatty acid binding protein E-FABP as a protein molecular marker for detecting liver cancer.
本发明的另一个目的在于提供一种抗表面脂肪酸结合蛋白E-FABP的抗体,包括单克隆抗体和多克隆抗体,用于制备检测肝癌的制剂的应用。Another object of the present invention is to provide an anti-surface fatty acid binding protein E-FABP antibody, including monoclonal antibody and polyclonal antibody, for the preparation of a preparation for detecting liver cancer.
本发明的再一个目的还在于提供一种抗表面脂肪酸结合蛋白E-FABP的抗体,包括单克隆抗体和多克隆抗体,用于制备检测肝癌的试剂盒的应用。Another object of the present invention is to provide an anti-surface fatty acid binding protein E-FABP antibody, including monoclonal antibody and polyclonal antibody, for the preparation of a kit for detecting liver cancer.
本发明的又一个目的在于提供一种体外检测肝细胞组织中表面脂肪酸结合蛋白E-FABP的表达是否异常的方法,该方法包括以下步骤:Yet another object of the present invention is to provide a method for detecting whether the expression of the surface fatty acid binding protein E-FABP in the liver cell tissue is abnormal in vitro, the method comprising the following steps:
A、用特异性抗表面脂肪酸结合蛋白E-FABP的抗体检测待测肝细胞中表面脂肪酸结合蛋白E-FABP的数量;A, detect the quantity of surface fatty acid binding protein E-FABP in the hepatocyte to be tested with the antibody of specificity anti-surface fatty acid binding protein E-FABP;
B、将步骤A测得的表面脂肪酸结合蛋白E-FABP的数量与正常肝组织中的表面脂肪酸结合蛋白E-FABP的数量进行比较,如测得的蛋白数量高于正常值,则表示被检测肝组织中表面脂肪酸结合蛋白E-FABP的表达异常。B. Compare the amount of surface fatty acid binding protein E-FABP measured in step A with the amount of surface fatty acid binding protein E-FABP in normal liver tissue, if the amount of protein measured is higher than the normal value, it means that it has been detected Abnormal expression of surface fatty acid binding protein E-FABP in liver tissue.
虽然在现有技术中有关于表面脂肪酸结合蛋白E-FABP与癌症相关的报道,但是到目前为止,还没有表面脂肪酸结合蛋白E-FABP与肝细胞癌的相关性的报道,因此,本发明的这一发现将为肝细胞癌的诊断和/或治疗提供一条全新的途径。Although in the prior art there are reports related to surface fatty acid binding protein E-FABP and cancer, so far, there is no report on the correlation between surface fatty acid binding protein E-FABP and hepatocellular carcinoma. Therefore, the present invention This discovery will provide a new avenue for the diagnosis and/or treatment of HCC.
附图说明Description of drawings
图1显示了对表面脂肪酸结合蛋白E-FABP的免疫印迹分析结果,Beta-actin为对照。Figure 1 shows the results of western blot analysis of the surface fatty acid binding protein E-FABP, Beta-actin as a control.
图2显示了对随机抽取的36例肝癌患者血清样品、24例乙肝而非肝癌患者的血清样品以及36例正常人血清样品中表面脂肪酸结合蛋白E-FABP的免疫印迹分析结果,transferrin为对照;其中N代表正常人血清,I代表乙肝而非肝癌患者血清,C代表肝癌患者血清。Figure 2 shows the results of immunoblotting analysis of surface fatty acid binding protein E-FABP in serum samples of 36 randomly selected patients with liver cancer, serum samples of 24 patients with hepatitis B but not liver cancer, and 36 normal human serum samples, transferrin was used as a control; Among them, N stands for normal human serum, I stands for serum of patients with hepatitis B but not liver cancer, and C stands for serum of patients with liver cancer.
图3为采用R数据分析软件对图2的免疫印迹图谱进行数据分析得出的蛋白质表达量相对分布图。Fig. 3 is a relative distribution diagram of protein expression obtained by data analysis of the western blot pattern in Fig. 2 using R data analysis software.
具体实施方式Detailed ways
下面结合具体实施例,进一步阐述本发明。应理解,这些实施例仅用于说明本发明而不用于限制本发明的范围。Below in conjunction with specific embodiment, further illustrate the present invention. It should be understood that these examples are only used to illustrate the present invention and are not intended to limit the scope of the present invention.
下列实施例中未注明具体条件的实验方法,通常按照常规条件如Sambrook等人,分子克隆:实验室手册(New York:Cold Spring Harbor Laboratory Press,1989)中所述的条件,或按照制造厂商所建议的条件。The experimental methods not indicating specific conditions in the following examples are usually according to conventional conditions such as Sambrook et al., molecular cloning: the conditions described in the laboratory manual (New York: Cold Spring Harbor Laboratory Press, 1989), or according to the manufacturer's suggested conditions.
发明人用非酶解样品制备法(nonenzymatic sample preparation,NESP)制备的肝细胞癌的癌组织与癌旁组织蛋白质样品,以同位素亲和标签与凝胶增强的液质联用技术(gel-enhanced liquid chromatography-mass spectrometry coupled with isotope-coded affinitytag,GeLC-MS-ICAT)对其中的蛋白进行鉴定并比较其表达量,结果发现表面脂肪酸结合蛋白E-FABP在肝细胞癌癌组织中高表达。免疫印迹实验进一步证实表面脂肪酸结合蛋白E-FABP的确在肝细胞癌的癌组织与癌旁组织中存在差异表达。The inventors used nonenzymatic sample preparation (nonenzymatic sample preparation, NESP) to prepare the protein samples of hepatocellular carcinoma tissue and paracancerous tissue, and used isotope affinity labeling and gel-enhanced liquid chromatography-mass spectrometry (gel-enhanced Liquid chromatography-mass spectrometry coupled with isotope-coded affinitytag (GeLC-MS-ICAT) identified the proteins and compared their expression levels, and found that the surface fatty acid binding protein E-FABP was highly expressed in HCC tissues. Western blotting further confirmed that the surface fatty acid binding protein E-FABP was differentially expressed in HCC tissues and adjacent tissues.
因此,以表面脂肪酸结合蛋白E-FABP作为一个蛋白质分子标记对其表达量进行检测可以用于检测肝癌,也即表面脂肪酸结合蛋白E-FABP可以用作检测肝癌的蛋白质分子标记。Therefore, detecting the expression level of the surface fatty acid binding protein E-FABP as a protein molecular marker can be used to detect liver cancer, that is, the surface fatty acid binding protein E-FABP can be used as a protein molecular marker for detecting liver cancer.
实施例1、肝细胞癌癌组织及癌旁组织蛋白质样品的制备 Example 1. Preparation of Protein Samples of Hepatocellular Carcinoma Tissue and Paracancerous Tissue
本实施例中所使用的尿素、3-[(3-胆酰胺丙基)-二乙铵]-1-丙磺酸(CHAPS)、苯甲基磺酰氟(PMSF)、二硫苏糖醇(DTT)均购自Sigma公司。Urea, 3-[(3-cholamidopropyl)-diethylammonium]-1-propanesulfonic acid (CHAPS), phenylmethylsulfonyl fluoride (PMSF), dithiothreitol used in this example (DTT) were purchased from Sigma Company.
本实施例以非酶解样品制备法(nonenzymatic sample preparation,NESP)制备肝细胞癌的癌组织及癌旁组织蛋白质样品,具体如下:In this embodiment, protein samples of cancer tissue and paracancerous tissue of hepatocellular carcinoma were prepared by nonenzymatic sample preparation (NESP), as follows:
手术切除的新鲜组织块迅速置于冰上,快速切成几个肉眼可见、无坏死区域的小块。用预冷的不含谷氨酰胺的RPMI1640培养基(5%胎牛血清,0.2mM PMSF,1mM EDTA,苯甲异噁唑青霉素25mg/mL,庆大霉素50mg/mL,青霉素100U/mL,链霉素100mg/mL,两性霉素B 0.25mg/mL,制霉菌素50U/mL)洗涤组织小块数次后,在液氮中快速研磨成细胞沉淀,细胞沉淀分别溶于适量裂解液(8mol/L尿素、4%CHAPS、40mmol/L Tris和65mmmol/L DTT)中,超声细胞破碎仪(Soniprep 150,英国,MSE)冰浴间歇超声2min,15000r/min、4℃离心1h。取上清,以改良的Bradford法(见Bio-Rad公司产品说明书)进行总蛋白质定量,制备好的肝细胞癌癌组织及相应癌旁组织的蛋白质样品分装,-80℃保存备用。The surgically excised fresh tissue block is quickly placed on ice and quickly cut into several small pieces that are visible to the naked eye without areas of necrosis. Use pre-cooled glutamine-free RPMI1640 medium (5% fetal bovine serum, 0.2mM PMSF, 1mM EDTA, benzisoxazole penicillin 25mg/mL, gentamicin 50mg/mL, penicillin 100U/mL, Streptomycin 100mg/mL, Amphotericin B 0.25mg/mL, Nystatin 50U/mL) After washing the small tissue pieces several times, they were quickly ground into cell pellets in liquid nitrogen, and the cell pellets were dissolved in an appropriate amount of lysate ( 8mol/L urea, 4% CHAPS, 40mmol/L Tris, and 65mmmol/L DTT), ultrasonic cell disruptor (Soniprep 150, UK, MSE) was used for intermittent ultrasonication in ice bath for 2min, centrifuged at 15000r/min, 4°C for 1h. The supernatant was taken, and the total protein was quantified by the modified Bradford method (see the product manual of Bio-Rad Company). The prepared protein samples of the hepatocellular carcinoma tissue and the corresponding paracancerous tissue were aliquoted and stored at -80°C for future use.
以上述方法制备11对肝细胞癌癌组织及癌旁组织蛋白质样品。11例肝细胞癌标本均来自东方肝胆外科医院,由2个病理科医生明确为肝细胞癌。均为男性,平均年龄48.5岁(31~65岁),血清检测hepatitis B病毒感染阳性,11例(100%)属临床分级(TNM分级)III级。其中,甲胎蛋白(AFP)高于25μg/L的10例(90.9%);9例肿瘤大于5cm。11例肝细胞癌标本的病理资料详见表1。Eleven pairs of protein samples of hepatocellular carcinoma tissues and paracancerous tissues were prepared by the above method. The 11 cases of hepatocellular carcinoma specimens were all obtained from Dongfang Hepatobiliary Surgery Hospital, and were confirmed as hepatocellular carcinoma by 2 pathologists. All were male, with an average age of 48.5 years (31-65 years old). The serum test was positive for hepatitis B virus infection, and 11 cases (100%) belonged to clinical grade (TNM grade) III. Among them, 10 cases (90.9%) had alpha-fetoprotein (AFP) higher than 25 μg/L; 9 cases had tumors larger than 5 cm. The pathological data of 11 cases of HCC specimens are shown in Table 1.
表1、11例肝细胞癌标本的病理资料Table 1. Pathological data of 11 cases of hepatocellular carcinoma specimens
本实施例所用癌组织及癌旁组织样品均为取自同一肝细胞癌患者的成对样品,所有11例肝细胞癌病例有极相似的病例诊断指标:均为男性,平均年龄48.5岁(31~65岁),血清检测hepatitis B病毒感染阳性,11例(100%)属TNM分级III级。其中,AFP高于25μg/L的10例(93.75%);9例肿瘤大于5cm。这种取样方法有利于降低个体间差别对实验分析工作的影响。The cancer tissue and paracancerous tissue samples used in this embodiment are paired samples taken from the same hepatocellular carcinoma patient, and all 11 routine hepatocellular carcinoma cases have very similar case diagnostic indicators: they are all males, with an average age of 48.5 years (31 years old). ~65 years old), the serum test was positive for hepatitis B virus infection, and 11 cases (100%) belonged to TNM grade III. Among them, 10 cases (93.75%) had AFP higher than 25 μg/L; 9 cases had tumors larger than 5 cm. This sampling method is conducive to reducing the impact of individual differences on experimental analysis.
实施例2、差异表达蛋白的筛选 Example 2 , Screening of Differentially Expressed Proteins
本实施例中使用的尿素、3-[(3-胆酰胺丙基)-二乙铵]-1-丙磺酸(CHAPS)、十二烷基磺酸钠(SDS)、二硫苏糖醇(DTT)购自Sigma公司;碘乙酰胺(IAA)、丙烯酰胺、N,N-甲叉双丙烯酰胺等购自Fluka公司;cleavable ICAT试剂购自Applied BiosystemsFramingham,MA公司。Urea, 3-[(3-cholamidopropyl)-diethylammonium]-1-propanesulfonic acid (CHAPS), sodium dodecylsulfonate (SDS), dithiothreitol used in this example (DTT) was purchased from Sigma; iodoacetamide (IAA), acrylamide, N, N-methylenebisacrylamide, etc. were purchased from Fluka; cleavable ICAT reagents were purchased from Applied Biosystems Framingham, MA.
过硫酸胺(AP)、TEMED、Tri-n-butylphosphat(TBP)、PDQuest软件等为Bio-Rad产品。Ammonium persulfate (AP), TEMED, Tri-n-butylphosphat (TBP), PDQuest software, etc. are Bio-Rad products.
Avidin亲和柱购自Applied Biosystems,Framingham,MA公司。Avidin affinity columns were purchased from Applied Biosystems, Framingham, MA.
LCQTM Deca XP system和ProteomeXTM Workstation购自Thermo Finnigan公司。LCQ ™ Deca XP system and ProteomeX ™ Workstation were purchased from Thermo Finnigan.
所使用的上样缓冲液的组成为:1mol/L Tris-HCl(pH6.8)0.6ml,50%甘油5ml,10%SDS 2ml,巯基乙醇0.5ml,蒸馏水1.9ml,少量六溴酚蓝。The composition of the loading buffer used is: 0.6ml of 1mol/L Tris-HCl (pH6.8), 5ml of 50% glycerol, 2ml of 10% SDS, 0.5ml of mercaptoethanol, 1.9ml of distilled water, and a small amount of hexabromophenol blue.
首先采用同位素亲和标签与凝胶增强的液质联用技术(gel-enhanced liquidchromatography-mass spectrometry coupled with isotope-coded affinity tag,GeLC-MS-ICAT)对实施例1得到的11对蛋白质样品中的其中一对(病例编号为4 29)肝细胞癌的癌组织及癌旁组织中的差异表达蛋白进行筛选鉴定,方法参照2003年Steven P.Gygi发表在MCP上的文献(Jiaxu Li et al.Mol Cell Proteomics.2003 Nov;2(11):1198-204.Epub.2003 Sep.23),具体过程如下:First, the gel-enhanced liquid chromatography-mass spectrometry coupled with isotope-coded affinity tag (GeLC-MS-ICAT) was used to analyze the 11 pairs of protein samples obtained in Example 1. One pair (case number 429) of the differentially expressed proteins in the cancer tissue and paracancerous tissue of hepatocellular carcinoma was screened and identified, and the method was referred to the literature published on MCP by Steven P. Gygi in 2003 (Jiaxu Li et al.Mol Cell Proteomics.2003 Nov; 2(11):1198-204.Epub.2003 Sep.23), the specific process is as follows:
NESP法制备的一对肝细胞癌癌组织与相应癌旁组织蛋白质样品(病例编号为429),分别取100μg,先用TBP还原蛋白质,而后分别用cleavable ICAT试剂(C12和C13)标记(其中C12与C13分别对应癌组织与相应癌旁组织,标记方法参照产品说明书)。混合后加入适量上样缓冲液,跑5%浓缩胶(上层胶)和7.5%~17.5%分离胶(下层胶),电泳条件为15mA/胶30min,然后30mA/胶,保持至溴酚蓝前沿入浓缩胶8cm左右。A pair of hepatocellular carcinoma tissue and corresponding paracancerous tissue protein samples prepared by the NESP method (case number 429), respectively took 100 μg, first reduced the protein with TBP, and then labeled with cleavable ICAT reagents (C 12 and C 13 ) respectively ( Among them, C 12 and C 13 correspond to cancer tissue and corresponding paracancerous tissue respectively, and the labeling method refers to the product manual). After mixing, add an appropriate amount of loading buffer, run 5% stacking gel (upper gel) and 7.5% ~ 17.5% separating gel (lower gel), electrophoresis conditions are 15mA/gel for 30min, then 30mA/gel, keep until the front of bromophenol blue Put about 8cm into the stacking gel.
考染染出条带后,将整个上样条带平均切为8份,每份再分别切成1mm3的小块,在100mM NH4HCO3,30%ACN中脱色,真空冷冻干燥,100μl 50mmol/L NH4HCO3(pH8.3,蛋白质:胰蛋白酶=1∶5,w/w)中4℃放置2hr,加入50μl 50mmol/LNH4HCO3(pH8.3),37℃酶解过夜。After dyeing the strips, cut the entire loading strip into 8 parts on average, and cut each part into small pieces of 1mm 3 , decolorize in 100mM NH 4 HCO 3 , 30% ACN, vacuum freeze-dry, 100μl Place in 50mmol/L NH 4 HCO 3 (pH8.3, protein:trypsin=1:5, w/w) at 4°C for 2 hours, add 50μl 50mmol/L NH 4 HCO 3 (pH8.3), and digest overnight at 37°C .
抽提蛋白(60%ACN、0.1%TFA),真空冷冻干燥。酶解后的每份肽段混合物经Avidin亲和柱纯化出已标记肽段后,再用LCQTM ProteomeXTM Workstation进行液相串联(LC-MS/MS)质谱鉴定,Bioworks(Thermo finnigan公司)软件进行数据库搜索并用relex软件(Scripps Research Institute,USA)进行数值计算。Protein was extracted (60% ACN, 0.1% TFA), and vacuum freeze-dried. Each peptide mixture after enzymatic hydrolysis was purified by Avidin affinity column to obtain labeled peptides, and then used LCQ TM ProteomeX TM Workstation for liquid phase tandem (LC-MS/MS) mass spectrometry identification, Bioworks (Thermo finnigan company) software Database searches were performed and numerical calculations were performed with relex software (Scripps Research Institute, USA).
运用NESP法和GeLC-MS-ICAT技术,我们共鉴定到426种有定量关系的蛋白质。其中两倍以上量变的蛋白质共201种,肝细胞癌癌组织高表达的有155种蛋白质;肝细胞癌癌旁组织高表达的有46种蛋白质。Using NESP method and GeLC-MS-ICAT technology, we identified 426 proteins with quantitative relationship. Among them, 201 proteins were quantitatively changed more than twice, and 155 proteins were highly expressed in HCC tissues; 46 proteins were highly expressed in hepatocellular carcinoma paracancerous tissues.
用LC-MS/MS质谱鉴定、数据库搜索及比值计算得2个含Cys的肽段被总共鉴定到3次,与表面脂肪酸结合蛋白(Fatty acid-binding protein,epidermal;E-FABP;Psoriasis-associated fatty acid-binding protein homolog;PA-FABP;Fatty acid binding protein5;Psoriasis associated fatty acid binding protein homolog;Fatty acid binding protein 5,psoriasisassociated;Fatty acid binding protein,psoriasis associated)相符,氨基酸覆盖率为15.56%。relex软件计算结果显示表面脂肪酸结合蛋白E-FABP在肝细胞癌癌组织中高表达,癌组织/癌旁组织的比值为2.682(SD=0),详细的鉴定情况及肽段打分结果见表格2(表格中C*代表C13标记的Cys)。Using LC-MS/MS mass spectrometry identification, database search and ratio calculation, two Cys-containing peptides were identified for a total of 3 times, and the surface fatty acid-binding protein (E-FABP; Psoriasis-associated Fatty acid-binding protein homolog; PA-FABP; Fatty acid binding protein5; Psoriasis associated fatty acid binding protein homolog; Fatty acid binding protein 5, psoriasis associated; Fatty acid binding protein, psoriasis associated) were consistent, and the amino acid coverage was 15.56%. The calculation results of relex software showed that the surface fatty acid binding protein E-FABP was highly expressed in hepatocellular carcinoma tissues, and the ratio of cancer tissue/paracancerous tissue was 2.682 (SD=0). The detailed identification and peptide scoring results are shown in Table 2( C * in the table represents C 13 labeled Cys).
表2、GeLC-MS-ICAT中2个含Cys的肽段的详细鉴定结果Table 2. Detailed identification results of two Cys-containing peptides in GeLC-MS-ICAT
实施例3、表面脂肪酸结合蛋白E-FABP差异表达的免疫印迹验证 Example 3. Western blot verification of differential expression of surface fatty acid binding protein E-FABP
为确认表面脂肪酸结合蛋白E-FABP的差异表达,取10位肝细胞癌患者的癌组织及相应癌旁组织蛋白质样品(NESP法制备,表1中除429例以外的其它10例),用购买的抗表面脂肪酸结合蛋白E-FABP抗体进行免疫印迹分析,具体过程简述如下:In order to confirm the differential expression of surface fatty acid binding protein E-FABP, 10 hepatocellular carcinoma patients' cancer tissues and corresponding paracancerous tissue protein samples (prepared by NESP method, other 10 cases except 429 cases in Table 1) were taken, purchased with The anti-surface fatty acid binding protein E-FABP antibody was used for western blot analysis, and the specific process was briefly described as follows:
每个样品取60μg蛋白质样品用十二烷基磺酸钠-聚丙烯酰胺凝胶(即:SDS-PAGE,胶浓度12%)分离,转移至PVDF膜(购自Amersham Biosciences公司)上,一抗使用兔抗人表面脂肪酸结合蛋白E-FABP单抗(购自HyCult biotechnology b.v.公司,1∶100稀释),室温孵育2小时,用TBST(每升含Tris 2.42g,氯化钠8g,Tween 20ml,用HCl调节pH到7.6)洗涤三次,每次5分钟,二抗为抗兔抗体(购自Santa Cruz公司,1∶5000稀释)室温孵育1小时,再用TBST洗涤三次,每次10分钟,最后用ECL plus试剂(AmershamBiosciences)反应5分钟后,以X-光片曝光检测;同时以beta-actin作为等量上样的对照(beta-actin单抗购自abcam公司,1∶1000稀释,二抗为小鼠),结果如图1所示。Take 60 μg of protein samples for each sample and separate them with sodium dodecylsulfonate-polyacrylamide gel (i.e. SDS-PAGE,
图1的免疫印迹结果显示,10对癌组织与癌旁组织基本上是等量上样,并且10对癌组织与癌旁组织中都呈现这样的现象:癌组织中表面脂肪酸结合蛋白E-FABP的杂交条带的浓度都明显高于相应的癌旁组织;可见表面脂肪酸结合蛋白E-FABP在肝细胞癌的癌组织中存在高表达,该结果与质谱检测结果一致。The results of Western blot in Figure 1 show that the 10 pairs of cancer tissues and para-cancerous tissues are basically loaded with the same amount, and this phenomenon is present in the 10 pairs of cancer tissues and para-cancerous tissues: the surface fatty acid binding protein E-FABP in cancer tissues The concentrations of the hybridization bands were significantly higher than those in the corresponding paracancerous tissues; it can be seen that the surface fatty acid binding protein E-FABP was highly expressed in the cancer tissues of hepatocellular carcinoma, which was consistent with the results of mass spectrometry.
为了能够体现更好的应用价值,我们随机挑取了36例肝癌患者的血清(样品资料见表3),24例乙肝而非肝癌患者的血清(样品资料见表4),36例正常人血清(样品资料见表5),随机进行分组(每一组包含一例正常人血清、一例乙肝而非肝癌患者血清,一例肝癌患者血清),每例样品取10ug蛋白质样品,同样运用上述的免疫印迹方法进行检测,同时采用transferrin作为等量上样的对照(transferrin单抗购自abcam公司,1∶1000稀释,二抗为小鼠),结果如图2所示。In order to reflect better application value, we randomly selected the serum of 36 patients with liver cancer (see Table 3 for sample information), the serum of 24 patients with hepatitis B but not liver cancer (see Table 4 for sample information), and the serum of 36 normal people. (see Table 5 for sample information), and randomly grouped (each group includes one case of normal human serum, one case of serum from a patient with hepatitis B but not liver cancer, and one case of serum from a patient with liver cancer), 10ug protein samples were taken from each sample, and the above-mentioned immunoblotting method was also used The detection was carried out, and transferrin was used as the control of the same amount of loading (transferrin monoclonal antibody was purchased from abcam company, diluted 1:1000, and the secondary antibody was mouse). The results are shown in Figure 2.
同时,我们采用R数据分析软件(免费从 http://www.r-project.org/下载)对图2的免疫印迹图谱进行数据分析,得出蛋白质表达量的相对分布图,结果如图3所示。At the same time, we used the R data analysis software (downloaded from http://www.r-project.org/ for free) to analyze the data of the immunoblotting pattern in Figure 2, and obtained the relative distribution of protein expression, the results are shown in Figure 3 shown.
从图2和图3可以看出,所有样品的上样量基本相同(从图3的transferrin中可以得出此结论),但是E-FABP蛋白质在肝癌患者血清中的表达量明显的高于正常人血清中的量,可见表面脂肪酸结合蛋白E-FABP在肝细胞癌患者的血清中高表达,该结果与质谱检测结果一致。It can be seen from Figure 2 and Figure 3 that the loading amount of all samples is basically the same (this conclusion can be drawn from the transferrin in Figure 3), but the expression of E-FABP protein in the serum of liver cancer patients is significantly higher than normal The amount in human serum shows that the surface fatty acid binding protein E-FABP is highly expressed in the serum of patients with hepatocellular carcinoma, which is consistent with the results of mass spectrometry.
综上所述,表面脂肪酸结合蛋白E-FABP在肝细胞癌的癌组织及癌旁组织中存在差异表达,显然与肝细胞癌的发生发展有着密切的相关性,因此,以表面脂肪酸结合蛋白E-FABP作为一个蛋白质分子标记对其表达量进行检测可以用于检测肝细胞癌。相应的,特异性抗表面脂肪酸结合蛋白E-FABP的抗体,包括各种抗表面脂肪酸结合蛋白E-FABP的单克隆抗体和多克隆抗体,由于其能够用于检测表面脂肪酸结合蛋白E-FABP的表达量,因而可以用于检测肝癌,或者用于制备检测肝癌的制剂或试剂盒等,这对于本领域的技术人员来说是显而易见的。In summary, the surface fatty acid binding protein E-FABP is differentially expressed in the cancer tissues and paracancerous tissues of hepatocellular carcinoma, which is obviously closely related to the occurrence and development of hepatocellular carcinoma. Therefore, the surface fatty acid binding protein E-FABP - FABP is used as a protein molecular marker to detect its expression level and can be used to detect hepatocellular carcinoma. Correspondingly, antibodies specific to the surface fatty acid binding protein E-FABP include various monoclonal antibodies and polyclonal antibodies against the surface fatty acid binding protein E-FABP, because they can be used to detect the surface fatty acid binding protein E-FABP Therefore, it can be used to detect liver cancer, or to prepare preparations or kits for detecting liver cancer, which is obvious to those skilled in the art.
虽然有关表面脂肪酸结合蛋白E-FABP动态的生物学功能及肿瘤相关机制还有待进一步研究,但是将其作为检测肝癌的标记物却是肯定的。表面脂肪酸结合蛋白E-FABP可作为肝细胞癌的潜在标志,而其在胞内的生物学功能提示表面脂肪酸结合蛋白E-FABP可能作为肝癌的预后分子标记和临床治疗的靶分子。Although the biological function and tumor-related mechanism of surface fatty acid binding protein E-FABP dynamics need to be further studied, it is certain to use it as a marker for detecting liver cancer. Surface fatty acid binding protein E-FABP can be used as a potential marker of hepatocellular carcinoma, and its biological function in cells suggests that surface fatty acid binding protein E-FABP may be used as a molecular marker for prognosis of liver cancer and a target molecule for clinical treatment.
表3、肝癌血清样品资料Table 3. Data of liver cancer serum samples
表4、乙肝血清样品资料Table 4. Hepatitis B serum sample information
表5、正常血清样品资料Table 5. Data of normal serum samples
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CN101921845A (en) * | 2010-09-18 | 2010-12-22 | 吉林大学 | Liver Fatty Acid Binding Protein Gene (L-FABP) as a Molecular Marker for Pork Quality Traits and Its Application |
CN102099683A (en) * | 2008-05-14 | 2011-06-15 | 菲伯普鲁斯有限公司 | Device and method for separating and analyzing blood |
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US9993816B2 (en) | 2007-02-09 | 2018-06-12 | Fabpulous B.V. | Apparatus and method for separating and analyzing blood |
CN102099683A (en) * | 2008-05-14 | 2011-06-15 | 菲伯普鲁斯有限公司 | Device and method for separating and analyzing blood |
CN102099683B (en) * | 2008-05-14 | 2015-03-25 | 菲伯普鲁斯有限公司 | Device and method for separating and analyzing blood |
US9182417B2 (en) | 2008-05-14 | 2015-11-10 | Fabpulous B.V. | Device and method for separating and analyzing blood |
CN101921845A (en) * | 2010-09-18 | 2010-12-22 | 吉林大学 | Liver Fatty Acid Binding Protein Gene (L-FABP) as a Molecular Marker for Pork Quality Traits and Its Application |
CN101921845B (en) * | 2010-09-18 | 2013-01-02 | 吉林大学 | Molecular marker of liver fatty acid binding protein (L-FABP) as pork quality character and application thereof |
WO2020067472A1 (en) * | 2018-09-28 | 2020-04-02 | シミックホールディングス株式会社 | Method for testing for liver disease, test kit therefor, and companion diagnostic agent |
JP2020056626A (en) * | 2018-09-28 | 2020-04-09 | シミックホールディングス株式会社 | Method of testing for liver disease, test kit for the same, and companion diagnostic agent |
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