CN118141903A - A circular RNA vaccine for the treatment of canine melanoma - Google Patents
A circular RNA vaccine for the treatment of canine melanoma Download PDFInfo
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Abstract
Description
技术领域Technical Field
本发明涉及治疗犬黑色素瘤疫苗技术领域,具体涉及一种治疗犬黑色素瘤的环状RNA疫苗。The invention relates to the technical field of vaccines for treating canine melanoma, and in particular to a circular RNA vaccine for treating canine melanoma.
背景技术Background technique
犬黑色素瘤常见于口腔、皮肤、眼部和足趾部位,是犬常发肿瘤之一,也是老龄犬死亡的主要原因。目前犬肿瘤的临床治疗手段主要包括手术、化学治疗和放射性治疗。常见的化疗药物包括环磷酰胺、多柔比星、长春新碱和泼尼松龙等,这些均存在肿瘤特异性差和毒副作用大等缺点。Canine melanoma is common in the oral cavity, skin, eyes and toes. It is one of the most common tumors in dogs and the main cause of death in elderly dogs. Currently, the clinical treatments for canine tumors mainly include surgery, chemotherapy and radiotherapy. Common chemotherapy drugs include cyclophosphamide, doxorubicin, vincristine and prednisolone, which all have disadvantages such as poor tumor specificity and large toxic side effects.
肿瘤疫苗是指通过将肿瘤组织中肿瘤相关抗原经过药学上可以接受载体形式注射于肿瘤患者体内,激活机体免疫系统杀灭肿瘤细胞的特异性免疫反应,以达到控制和治疗肿瘤的目的。Tumor vaccine refers to the process of injecting tumor-associated antigens in tumor tissue into the body of a tumor patient in the form of a pharmaceutically acceptable carrier, activating the body's immune system to kill tumor cells in order to achieve the purpose of controlling and treating tumors.
酪氨酸酶是黑色素形成过程中的主要催化酶。酪氨酸酶表达于复合性黑色素痣,而在真皮深部表达降低,同时高表达于恶性黑色素瘤中。因此,酪氨酸酶常被用于黑色素瘤的标志物和特异性抗原。由于酪氨酸酶为机体自身蛋白,在进行免疫接种时容易产生免疫抑制和耐受,不能达到治疗黑色素瘤的目的。国外有公司采用异种抗原进行免疫接种来突破机体的免疫抑制,例如,梅里亚公司推出的ONCEPT疫苗,是将人酪氨酸酶抗原通过质粒DNA形式形成来DNA疫苗来治疗犬黑色素瘤。该疫苗在后续回顾性研究显示,其治疗效果有限。Tyrosinase is the main catalytic enzyme in the process of melanin formation. Tyrosinase is expressed in compound melanocytic nevus, while its expression is reduced in the deep dermis, and it is highly expressed in malignant melanoma. Therefore, tyrosinase is often used as a marker and specific antigen for melanoma. Since tyrosinase is the body's own protein, it is easy to produce immunosuppression and tolerance during immunization, and cannot achieve the purpose of treating melanoma. Some foreign companies use xenogeneic antigens for immunization to break through the body's immunosuppression. For example, the ONCEPT vaccine launched by Merial is a DNA vaccine that forms human tyrosinase antigen in the form of plasmid DNA to treat canine melanoma. Subsequent retrospective studies have shown that the vaccine has limited therapeutic effects.
发明内容Summary of the invention
本发明的目的在于提供一种治疗犬黑色素瘤的环状RNA疫苗,及其制备方法和应用。通过脂质体递送表达优化的犬酪氨酸酶的环状RNA到细胞内,在体内高效表达优化的犬酪氨酸酶,刺激机体产生免疫反应,达到治疗的效果。The purpose of the present invention is to provide a circular RNA vaccine for treating canine melanoma, and a preparation method and application thereof. The circular RNA expressing optimized canine tyrosinase is delivered into cells through liposomes, and the optimized canine tyrosinase is efficiently expressed in vivo, stimulating the body to produce an immune response, thereby achieving a therapeutic effect.
本发明的目的是通过以下技术方案来实现的:The objective of the present invention is achieved through the following technical solutions:
本发明提供了一种治疗犬黑色素瘤的环状RNA疫苗,所述环状RNA疫苗中包含编码优化的犬酪氨酸酶的环状RNA分子,所述优化的犬酪氨酸酶包括犬酪氨酸酶或其同源序列,连接臂,和增强序列或其同源序列。The present invention provides a circular RNA vaccine for treating canine melanoma. The circular RNA vaccine comprises a circular RNA molecule encoding an optimized canine tyrosinase. The optimized canine tyrosinase comprises canine tyrosinase or a homologous sequence thereof, a connecting arm, and an enhancing sequence or a homologous sequence thereof.
所述犬酪氨酸酶的氨基酸序列如SEQ ID NO:1所示。The amino acid sequence of the canine tyrosinase is shown in SEQ ID NO:1.
所述犬酪氨酸酶的核苷酸序列如SEQ ID NO:2所示。The nucleotide sequence of the canine tyrosinase is shown in SEQ ID NO:2.
所述同源序列为具有至少90%,可选至少95%,优选至少97%,更优选至少98%,最优选至少99%的序列同一性的序列。The homologous sequences are sequences having at least 90%, optionally at least 95%, preferably at least 97%, more preferably at least 98%, and most preferably at least 99% sequence identity.
作为本发明的一个实施方案,所述连接臂是由2-20个柔性氨基酸组成的柔性多肽,所述柔性氨基酸选自Gly、Ser、Ala和Thr中的至少一种。更优选地,所述连接子为(Gly-Gly-Gly-Gly-Ser)n,其中n为2-5之间的整数(比如可以为2、3、4或5)。As an embodiment of the present invention, the linker is a flexible polypeptide consisting of 2-20 flexible amino acids, and the flexible amino acids are selected from at least one of Gly, Ser, Ala and Thr. More preferably, the linker is (Gly-Gly-Gly-Gly-Ser)n, wherein n is an integer between 2 and 5 (for example, 2, 3, 4 or 5).
优选的连接臂氨基酸序列如下:GGGGSGGGGSGGGGS(SEQ ID NO:3)。The preferred linker arm amino acid sequence is as follows: GGGGSGGGGSGGGGS (SEQ ID NO: 3).
优选的连接臂核苷酸序列如下:The preferred linker arm nucleotide sequence is as follows:
GGCGGCGGGGGCAGCGGCGGCGGGGGATCTGGCGGAGGAGGCAGC(SEQ ID NO:4)。GGCGGCGGGGGCAGCGGCGGCGGGGGATCTGGCGGAGGAGGCAGC (SEQ ID NO: 4).
作为本发明的一个实施方案,所述增强序列选自氨基酸序列如SEQ ID NO:5、SEQID NO:7、SEQ ID NO:9或SEQ ID NO:11所示的增强序列。As one embodiment of the present invention, the enhancing sequence is selected from the enhancing sequence shown in the amino acid sequence of SEQ ID NO:5, SEQ ID NO:7, SEQ ID NO:9 or SEQ ID NO:11.
氨基酸序列如SEQ ID NO:5所示的增强序列记为增强序列ConA;增强序列ConA的核苷酸序列如SEQ ID NO:6所示。The enhancing sequence whose amino acid sequence is shown in SEQ ID NO:5 is recorded as enhancing sequence ConA; the nucleotide sequence of enhancing sequence ConA is shown in SEQ ID NO:6.
氨基酸序列如SEQ ID NO:7所示的增强序列记为增强序列T113G;增强序列T113G的核苷酸序列如SEQ ID NO:8所示。The enhancing sequence whose amino acid sequence is shown in SEQ ID NO:7 is recorded as enhancing sequence T113G; the nucleotide sequence of enhancing sequence T113G is shown in SEQ ID NO:8.
氨基酸序列如SEQ ID NO:9所示的增强序列记为增强序列K115T;增强序列K115T的核苷酸序列如SEQ ID NO:10所示。The enhancing sequence whose amino acid sequence is shown in SEQ ID NO:9 is recorded as enhancing sequence K115T; the nucleotide sequence of enhancing sequence K115T is shown in SEQ ID NO:10.
氨基酸序列如SEQ ID NO:11所示的增强序列记为增强序列L87T;增强序列L87T的核苷酸序列如SEQ ID NO:12所示。The enhancing sequence whose amino acid sequence is shown in SEQ ID NO:11 is recorded as enhancing sequence L87T; the nucleotide sequence of enhancing sequence L87T is shown in SEQ ID NO:12.
作为本发明的一个实施方案,所述环状RNA包含如下(a)~(d)中任一项所示排列次序的元件:As one embodiment of the present invention, the circular RNA comprises elements arranged in the order shown in any one of the following (a) to (d):
(a)第一外显子、第二外显子、5’间隔区、翻译起始元件、编码元件和3’间隔区;(a) the first exon, the second exon, the 5' spacer, the translation initiation element, the coding element and the 3' spacer;
(b)第一外显子、第二外显子、翻译起始元件和编码元件;(b) first exon, second exon, translation initiation element and coding element;
(c)翻译起始元件和编码元件;(c) translation initiation elements and coding elements;
(d)翻译起始元件、编码元件和插入元件;(d) translation initiation elements, coding elements and insertion elements;
所述编码元件编码所述优化的犬酪氨酸酶。The coding element encodes the optimized canine tyrosinase.
作为本发明的一个实施方案,所述翻译起始元件包含如下所示的一种或两种以上的具有翻译起始活性的序列:IRES序列、5’UTR序列、Kozak序列、包含m6A修饰的序列、核糖体18S rRNA的互补序列。As one embodiment of the present invention, the translation initiation element comprises one or more of the following sequences with translation initiation activity: an IRES sequence, a 5'UTR sequence, a Kozak sequence, a sequence comprising an m6A modification, and a complementary sequence of ribosomal 18S rRNA.
作为本发明的一个实施方案,所述插入元件包含如下所示的一种或两种以上的序列:非翻译区序列、polyN序列、适配体序列、核糖体开关序列、结合转录调控因子的序列;其中,所述polyN序列,其中N选自A、T、G、C中的至少一种。As one embodiment of the present invention, the insertion element comprises one or more sequences as shown below: a non-translated region sequence, a polyN sequence, an adapter sequence, a ribosome switch sequence, and a sequence that binds a transcriptional regulatory factor; wherein, in the polyN sequence, N is selected from at least one of A, T, G, and C.
作为本发明的一个实施方案,所述环状RNA分子是由重组核酸分子转录获得线性RNA,进一步环化形成,所述重组核酸分子的编码区具有如SEQ ID NO:18、SEQ ID NO:20、SEQ ID NO:22或SEQ ID NO:24所示的核苷酸序列。As one embodiment of the present invention, the circular RNA molecule is obtained by transcribing a linear RNA from a recombinant nucleic acid molecule and further cyclizing it, and the coding region of the recombinant nucleic acid molecule has a nucleotide sequence as shown in SEQ ID NO:18, SEQ ID NO:20, SEQ ID NO:22 or SEQ ID NO:24.
所述重组核酸分子沿5’端到3’端依次包含内含子片段II、翻译起始原件截断片段II、编码区、polyAC元件、翻译起始原件截断片段I和内含子片段I;所述编码区具有如SEQID NO:18、SEQ ID NO:20、SEQ ID NO:22或SEQ ID NO:24所示的核苷酸序列。The recombinant nucleic acid molecule comprises, from the 5' end to the 3' end, an intron fragment II, a translation initiation element truncated fragment II, a coding region, a polyAC element, a translation initiation element truncated fragment I and an intron fragment I; the coding region has a nucleotide sequence as shown in SEQ ID NO: 18, SEQ ID NO: 20, SEQ ID NO: 22 or SEQ ID NO: 24.
在一些实施例中,所述环状RNA分子的制备方法包括如下步骤:In some embodiments, the method for preparing the circular RNA molecule comprises the following steps:
S1、按沿5’端到3’端依次包含内含子片段II、翻译起始原件截断片段II、编码区、polyAC元件、翻译起始原件截断片段I和内含子片段合成基因片段并克隆至pUC57载体,得到DNA载体;S1, synthesizing a gene fragment including intron fragment II, translation initiation element truncated fragment II, coding region, polyAC element, translation initiation element truncated fragment I and intron fragment from 5' end to 3' end in sequence and cloning into pUC57 vector to obtain a DNA vector;
S2、所述DNA载体分别转化DH5α感受态细胞,得到工程菌;所述工程菌经质粒抽提,测序验证序列正确;S2. The DNA vectors are transformed into DH5α competent cells to obtain engineered bacteria; the engineered bacteria are extracted by plasmid and sequenced to verify that the sequence is correct;
S3、验证序列正确的工程菌质粒经酶切与纯化,获得线性化质粒;S3, the engineered bacterial plasmid with the correct sequence was verified, and then digested and purified to obtain a linearized plasmid;
S4、所述线性化质粒进行转录获得线性RNA;S4, transcribing the linearized plasmid to obtain linear RNA;
S5、环化,获得环状RNA。S5. Circularization to obtain circular RNA.
步骤S4中,转录产物中加入LiCl溶液沉淀,离心获得线性RNA沉淀,经无酶水重悬沉淀,获得线性RNA水溶液;所述线性RNA水溶液经环化、浓缩、HPLC纯化、超滤浓缩,获得环状RNA分子。In step S4, LiCl solution is added to the transcription product for precipitation, and a linear RNA precipitate is obtained by centrifugation, and the precipitate is resuspended in enzyme-free water to obtain a linear RNA aqueous solution; the linear RNA aqueous solution is cyclized, concentrated, HPLC purified, and ultrafiltered to obtain a circular RNA molecule.
作为本发明的一个实施方案,所述疫苗还包括可电离阳离子脂质载体。通过将上述环状RNA包载进入脂质载体中,可以提高机体对环状RNA的摄取效率,同时提高了环状RNA的储存稳定性。As an embodiment of the present invention, the vaccine further comprises an ionizable cationic lipid carrier. By encapsulating the circular RNA into the lipid carrier, the uptake efficiency of the circular RNA by the body can be improved, and the storage stability of the circular RNA can be improved.
作为本发明的一个实施方案,所述可电离阳离子脂质载体为脂质纳米颗粒,所述脂质纳米颗粒的原料组成按摩尔百分比计包括:阳离子脂质45%-55%、胆固醇35%-44%、中性脂质3%-10%和PEG修饰脂质0.8%-1.8%;所述阳离子脂质为CMAX4;所述胆固醇为5-胆甾烯-3β-醇;所述中性脂质为DSPC或者DOPE;所述PEG修饰脂质为PEG-DMG、PEG-DSG或者PEG-DPG。As an embodiment of the present invention, the ionizable cationic lipid carrier is a lipid nanoparticle, and the raw material composition of the lipid nanoparticle includes, by molar percentage, 45%-55% of cationic lipid, 35%-44% of cholesterol, 3%-10% of neutral lipid and 0.8%-1.8% of PEG-modified lipid; the cationic lipid is CMAX4; the cholesterol is 5-cholesten-3β-ol; the neutral lipid is DSPC or DOPE; the PEG-modified lipid is PEG-DMG, PEG-DSG or PEG-DPG.
作为本发明的一个实施方案,所述犬黑色素瘤的环状RNA疫苗还包括冷冻保护剂。所述冷冻保护剂组成包括但不限于蔗糖、海藻糖、甘露醇中的至少一种。As an embodiment of the present invention, the circular RNA vaccine for canine melanoma further comprises a cryoprotectant, wherein the cryoprotectant composition includes but is not limited to at least one of sucrose, trehalose and mannitol.
所述环状RNA疫苗中,所述冷冻保护剂含量为5%-20%(w/v)。In the circular RNA vaccine, the content of the cryoprotectant is 5%-20% (w/v).
与现有技术相比,本发明具有如下有益效果:Compared with the prior art, the present invention has the following beneficial effects:
1)目前尚未有报道犬黑色素瘤mRNA抗原报道,本发明通过优化增强犬酪氨酸酶的免疫原性,刺激免疫系统识别犬酪氨酸酶,同时使用环状RNA技术和LNP递送技术制备得到犬酪氨酸酶环状RNA疫苗,在体内高表达优化的犬酪氨酸酶,从而激活免疫系统对犬黑色素瘤产生治疗作用。1) There are no reports on canine melanoma mRNA antigens. The present invention optimizes and enhances the immunogenicity of canine tyrosinase, stimulates the immune system to recognize canine tyrosinase, and uses circular RNA technology and LNP delivery technology to prepare a canine tyrosinase circular RNA vaccine, which highly expresses the optimized canine tyrosinase in vivo, thereby activating the immune system to produce a therapeutic effect on canine melanoma.
2)与已公开的DNA疫苗人酪氨酸酶抗原相比,以本发明抗原制备的犬黑色素瘤疫苗,与犬黑色素瘤内源性表达的酪氨酸酶具有更相近的抗原表位和T细胞表位,更容易在体内激活特异性T细胞,产生更好的治疗效果,为患病犬提高更长的生存期。2) Compared with the disclosed DNA vaccine human tyrosinase antigen, the canine melanoma vaccine prepared with the antigen of the present invention has more similar antigenic epitopes and T cell epitopes to the tyrosinase endogenously expressed in canine melanoma, and is more likely to activate specific T cells in vivo, resulting in better therapeutic effects and prolonging the survival of sick dogs.
3)本发明的环状RNA疫苗具有较低的免疫剂量,对患病犬安全,无副作用。3) The circular RNA vaccine of the present invention has a lower immunization dose, is safe for sick dogs, and has no side effects.
附图说明BRIEF DESCRIPTION OF THE DRAWINGS
通过阅读参照以下附图对非限制性实施例所作的详细描述,本发明的其它特征、目的和优点将会变得更明显:Other features, objects and advantages of the present invention will become more apparent from the detailed description of non-limiting embodiments made with reference to the following drawings:
图1为体外合成的不同环状RNA的毛细管电泳图;FIG1 is a capillary electrophoresis diagram of different circular RNAs synthesized in vitro;
图2为不同环状RNA疫苗免疫犬的引起的细胞免疫强度图;FIG2 is a graph showing the cellular immunity intensity induced by dogs immunized with different circular RNA vaccines;
图3为三种环状RNA疫苗治疗患有黑色素瘤犬的生存曲线图。FIG. 3 is a graph showing the survival curves of dogs with melanoma treated with three circular RNA vaccines.
具体实施方式Detailed ways
下面结合具体实施例对本发明进行详细说明。以下实施例将有助于本领域的技术人员进一步理解本发明,但不以任何形式限制本发明。应当指出的是,对本领域的普通技术人员来说,在不脱离本发明构思的前提下,还可以做出若干变形和改进。这些都属于本发明的保护范围。The present invention is described in detail below in conjunction with specific embodiments. The following embodiments will help those skilled in the art to further understand the present invention, but are not intended to limit the present invention in any form. It should be noted that, for those of ordinary skill in the art, several variations and improvements can be made without departing from the concept of the present invention. These all belong to the protection scope of the present invention.
实施例1、基因设计与合成Example 1. Gene design and synthesis
酪氨酸酶是黑色素瘤生长恶化过程中高表达的一种自身蛋白,为了突破机体自身免疫障碍,并且使环状RNA疫苗在体内高表达,本发明设计不同的酪氨酸酶抗原,并优化mRNA序列以实现环状RNA疫苗的高表达和突破自身免疫,其中包括犬酪氨酸酶dTYR、人酪氨酸酶hTYR、小鼠酪氨酸酶mTYR、增强的犬酪氨酸酶dTYR-ConA、增强的犬酪氨酸酶dTYR-T113G、增强的犬酪氨酸酶dTYR-K115T和增强的犬酪氨酸酶dTYR-L87T。Tyrosinase is a self-protein that is highly expressed during the growth and deterioration of melanoma. In order to break through the body's autoimmune barriers and make the circular RNA vaccine highly expressed in the body, the present invention designs different tyrosinase antigens and optimizes the mRNA sequence to achieve high expression of the circular RNA vaccine and break through autoimmunity, including canine tyrosinase dTYR, human tyrosinase hTYR, mouse tyrosinase mTYR, enhanced canine tyrosinase dTYR-ConA, enhanced canine tyrosinase dTYR-T113G, enhanced canine tyrosinase dTYR-K115T and enhanced canine tyrosinase dTYR-L87T.
各抗原对应的氨基酸序列和环状RNA编码区核苷酸序列如下:The amino acid sequences and nucleotide sequences of the circular RNA coding regions corresponding to each antigen are as follows:
犬酪氨酸酶dTYR氨基酸序列如SEQ ID NO:1所示。犬酪氨酸酶dTYR的核苷酸序列如SEQ ID NO:2所示。The amino acid sequence of canine tyrosinase dTYR is shown in SEQ ID NO: 1. The nucleotide sequence of canine tyrosinase dTYR is shown in SEQ ID NO: 2.
人酪氨酸酶hTYR氨基酸序列如SEQ ID NO:13所示。人酪氨酸酶hTYR核苷酸序列如SEQ ID NO:14所示。The amino acid sequence of human tyrosinase hTYR is shown in SEQ ID NO: 13. The nucleotide sequence of human tyrosinase hTYR is shown in SEQ ID NO: 14.
小鼠酪氨酸酶mTYR氨基酸序列如SEQ ID NO:15所示。小鼠酪氨酸酶mTYR核苷酸序列如SEQ ID NO:16所示。The amino acid sequence of mouse tyrosinase mTYR is shown in SEQ ID NO: 15. The nucleotide sequence of mouse tyrosinase mTYR is shown in SEQ ID NO: 16.
增强的犬酪氨酸酶dTYR-ConA氨基酸序列如SEQ ID NO:17所示。增强的犬酪氨酸酶dTYR-ConA核苷酸序列如SEQ ID NO:18所示。The amino acid sequence of the enhanced canine tyrosinase dTYR-ConA is shown in SEQ ID NO: 17. The nucleotide sequence of the enhanced canine tyrosinase dTYR-ConA is shown in SEQ ID NO:18.
增强的犬酪氨酸酶dTYR-T113G氨基酸序列如SEQ ID NO:19所示。增强的犬酪氨酸酶dTYR-T113G核苷酸序列如SEQ ID NO:20所示。The amino acid sequence of the enhanced canine tyrosinase dTYR-T113G is shown in SEQ ID NO: 19. The nucleotide sequence of the enhanced canine tyrosinase dTYR-T113G is shown in SEQ ID NO: 20.
增强的犬酪氨酸酶dTYR-K115T氨基酸序列如SEQ ID NO:21所示。增强的犬酪氨酸酶dTYR-K115T核苷酸序列如SEQ ID NO:22所示。The amino acid sequence of the enhanced canine tyrosinase dTYR-K115T is shown in SEQ ID NO: 21. The nucleotide sequence of the enhanced canine tyrosinase dTYR-K115T is shown in SEQ ID NO: 22.
增强的犬酪氨酸酶dTYR-L87T氨基酸序列如SEQ ID NO:23所示。增强的犬酪氨酸酶dTYR-L87T核苷酸序列如SEQ ID NO:24所示。The amino acid sequence of the enhanced canine tyrosinase dTYR-L87T is shown in SEQ ID NO: 23. The nucleotide sequence of the enhanced canine tyrosinase dTYR-L87T is shown in SEQ ID NO: 24.
在上述各抗原的核苷酸序列按照专利CN114438127A所描述,组成各抗原目标编码区,在各抗原目标编码区前加入内含子片段II和翻译起始原件截断片段II;在各抗原目标编码区后加入polyAC元件、翻译起始原件截断片段I和内含子片段I,构成用于制备环状RNA的线性RNA。The nucleotide sequences of the above-mentioned antigens are described in patent CN114438127A to form each antigen target coding region, and intron fragment II and translation initiation element truncation fragment II are added before each antigen target coding region; polyAC element, translation initiation element truncation fragment I and intron fragment I are added after each antigen target coding region to form a linear RNA for preparing circular RNA.
其中,内含子片段II核苷酸序列如SEQ ID NO:25所示。Among them, the nucleotide sequence of intron fragment II is shown in SEQ ID NO:25.
翻译起始原件截断片段II核苷酸序列如下(SEQ ID NO:26):The nucleotide sequence of the translation initiation element truncated fragment II is as follows (SEQ ID NO: 26):
CTACTAAACTAGATATAGTTACATTTAAAACTCTTCTTTATATCATACAGTTGAATAGTAGAAAGAGAAA。CTACTAAACTAGATATAGTTACATTTAAAACTCTTCTTTATATCATACAGTTGAATAGTAGAAAGAGAAA.
polyAC核苷酸序列如下(SEQ ID NO:27):The polyAC nucleotide sequence is as follows (SEQ ID NO: 27):
AAAAAACAAAAAACAAAACAAAAAACAAAAAACAAAACAAAAAACAAAAA ACAAAAAAAAAACAAAAAACAAAACAAAAAACAAAAAACAAAACAAAAAACA AAAAACAAAA。AAAAAACAAAAAACAAAACAAAAAACAAAAAACAAAACAAAAAACAAAAA ACAAAAAAAAAACAAAAAACAAAAAACAAAAAACAAAAAACAAAACAAAAAACA AAAAACAAAA.
翻译起始原件截断片段I核苷酸序列如SEQ ID NO:28所示。The nucleotide sequence of the translation initiation element truncated fragment I is shown in SEQ ID NO:28.
内含子片段I核苷酸序列如下(SEQ ID NO:29):The nucleotide sequence of intron fragment I is as follows (SEQ ID NO: 29):
TAATTGAGGCCTGAGTATAAGGTGACTTATACTTGTAATCTATCTAAACGGG GAACCTCTCTAGTAGACAATCCCGTGCTAAATTGTAGGACTACCGTCAGTTGCTC ACTGTGCATCAGATT。TAATTGAGGCCTGAGTATAAGGTGACTTATACTTGTAATCTATCTAAACGGG GAACCTCTCTAGTAGACAATCCCGTGCTAAATTGTAGGACTACCGTCAGTTGCTC ACTGTGCATCAGATT.
上述基因片段委托苏州金唯智生物科技有限公司合成并克隆至pUC57载体,得到重组质粒P-dTYR,P-hTYR,P-mTYR,P-dTYR-ConA,P-dTYR-T113G,P-dTYR-K115T,P-dTYR-L87T,经基因测序验证正确。由载体DNA转录获得线性RNA,由线性RNA按如下机制形成环状RNA:核酶识别翻译起始元件截断片段I(IRES片段I)与内含子片段I连接位置首先产生断裂,释放内含子片段I;然后核酶识别翻译起始元件截断片段II(IRES片段II)与内含子片段II连接位置产生断裂,释放内含子片段II。翻译起始元件截断片段I的3’末端与翻译起始元件截断片段II的5’末端连接成环状分子。The above gene fragments were commissioned to Suzhou Jinweizhi Biotechnology Co., Ltd. to synthesize and clone into the pUC57 vector, and the recombinant plasmids P-dTYR, P-hTYR, P-mTYR, P-dTYR-ConA, P-dTYR-T113G, P-dTYR-K115T, and P-dTYR-L87T were obtained, which were verified to be correct by gene sequencing. Linear RNA was obtained by transcription from the vector DNA, and circular RNA was formed from the linear RNA according to the following mechanism: ribozyme recognized the connection position of translation initiation element truncated fragment I (IRES fragment I) and intron fragment I to first generate a break, releasing intron fragment I; then ribozyme recognized the connection position of translation initiation element truncated fragment II (IRES fragment II) and intron fragment II to generate a break, releasing intron fragment II. The 3' end of translation initiation element truncated fragment I and the 5' end of translation initiation element truncated fragment II are connected to form a circular molecule.
实施例2、环状RNA的制备Example 2. Preparation of circular RNA
(a)菌种制备:将实施例1中合成的DNA载体分别转化DH5α感受态细胞,涂布于含有抗生素100μg/ml氨苄青霉素的LB培养基平板,37℃培养,等平板上的菌落清晰可见时,挑取单菌落于含有抗生素100μg/ml氨苄青霉素的3ml LB液体培养基,37℃培养,从中取1ml菌液加入终浓度为8%的甘油,-80℃冷冻保存,分别得到工程菌,编号为DH5α-dTYR,DH5α-hTYR,DH5α-mTYR,DH5α-dTYR-ConA,DH5α-dTYR-T113G,DH5α-dTYR-K115T,DH5α-dTYR-L87T。作为后续试验的种子菌。(a) Preparation of strains: The DNA vectors synthesized in Example 1 were transformed into DH5α competent cells, respectively, and spread on LB medium plates containing 100 μg/ml ampicillin, and cultured at 37°C. When the colonies on the plates were clearly visible, single colonies were picked and placed in 3 ml LB liquid medium containing 100 μg/ml ampicillin, and cultured at 37°C. 1 ml of the bacterial solution was added to glycerol with a final concentration of 8%, and stored at -80°C to obtain engineered bacteria, numbered DH5α-dTYR, DH5α-hTYR, DH5α-mTYR, DH5α-dTYR-ConA, DH5α-dTYR-T113G, DH5α-dTYR-K115T, and DH5α-dTYR-L87T, respectively. They were used as seed bacteria for subsequent experiments.
(b)质粒抽提:将上一步制备得到的工程菌进行37℃/220rpm活化3~4h;取活化菌液扩大培养,培养条件:37℃/220rpm震荡过夜培养;通过商用试剂盒进行质粒抽提(天根无内毒素质粒大提试剂盒),经测序验证序列正确。(b) Plasmid extraction: The engineered bacteria prepared in the previous step were activated at 37°C/220 rpm for 3-4 h; the activated bacterial solution was taken for expansion culture, and the culture conditions were: shaking culture at 37°C/220 rpm overnight; plasmids were extracted using a commercial kit (Tiangen Endotoxin-Free Plasmid Extraction Kit), and the sequence was verified to be correct by sequencing.
(c)质粒酶切与纯化:通过限制性核酸内切酶BsaI(近岸蛋白)/BsaI(Takara)进行质粒酶切,酶切体系如下:10×缓冲液(buffer):100μl,质粒:5mg,BsaI:150μl(5000U),水补足至1000μl,37℃过夜酶切。酶切后使用商用DNA回收试剂盒(TIANGEN)将酶切产物进行柱纯化,获得线性化质粒。(c) Plasmid digestion and purification: The plasmid was digested by restriction endonuclease BsaI (nearshore protein)/BsaI (Takara), and the digestion system was as follows: 10× buffer: 100 μl, plasmid: 5 mg, BsaI: 150 μl (5000 U), water was added to 1000 μl, and digestion was carried out at 37°C overnight. After digestion, the digestion product was purified by column using a commercial DNA recovery kit (TIANGEN) to obtain a linearized plasmid.
(d)体外转录:配置转录体系如下表1所示:(d) In vitro transcription: The transcription system is configured as shown in Table 1 below:
表1Table 1
反应条件:在37℃/220rpm恒温震荡反应2~4h,后转录体系中加入2ml脱氧核糖核酸酶I(DNaseI),在37℃/220rpm恒温震荡反应15min。Reaction conditions: Constant temperature shaking reaction at 37°C/220rpm for 2-4h, then add 2ml of deoxyribonuclease I (DNaseI) to the transcription system, and constant temperature shaking reaction at 37°C/220rpm for 15min.
(e)转录产物RNA沉淀:将上述所得的转录产物中加入LiCl溶液(终浓度2.5M),置于-20℃过夜沉淀;将过夜处理溶液进行离心,获得RNA沉淀,室温干燥后通过无酶水重悬沉淀,获得线状RNA水溶液。(e) Precipitation of RNA of the transcription product: LiCl solution (final concentration 2.5 M) was added to the transcription product obtained above, and the mixture was placed at -20°C for overnight precipitation. The overnight treatment solution was centrifuged to obtain RNA precipitate, which was then dried at room temperature and resuspended in enzyme-free water to obtain a linear RNA aqueous solution.
(f)RNA环化与浓缩:环化体系与条件如下表2所示:(f) RNA cyclization and concentration: The cyclization system and conditions are shown in Table 2 below:
表2Table 2
将上述溶液充分混合均匀,于55℃加热15min。将环化RNA产物进行超滤管离心浓缩,弃去滤液;并将超滤后的液体转移至新的离心管中。The above solutions were mixed thoroughly and heated at 55°C for 15 min. The circularized RNA product was concentrated by ultrafiltration tube centrifugation, and the filtrate was discarded; and the ultrafiltration liquid was transferred to a new centrifuge tube.
(g)环状RNA HPLC纯化:取环状RNA在150mM磷酸盐缓冲液流动相中通过色谱柱SEC-1000(SEPAX)进行分离,并收集主峰成分。(g) Circular RNA HPLC purification: Circular RNA was separated by SEC-1000 (SEPAX) column in 150 mM phosphate buffer mobile phase, and the main peak component was collected.
(h)纯化后环状RNA超滤浓缩:将环状RNA进行超滤管离心浓缩,弃去滤液;添加无酶水至超滤管中,重复清洗环状RNA两遍;将超滤后的液体转移至新的离心管中。(h) Ultrafiltration and concentration of purified circular RNA: The circular RNA is concentrated by centrifugation in an ultrafiltration tube and the filtrate is discarded; enzyme-free water is added to the ultrafiltration tube and the circular RNA is washed twice; the ultrafiltration liquid is transferred to a new centrifuge tube.
(i)成功制备了各环状RNA分子(见表3),编号分别为编号分别为cmRNA-dTYR,cmRNA-hTYR,cmRNA-mTYR,cmRNA-dTYR-ConA,cmRNA-dTYR-T113G,cmRNA-dTYR-K115T,cmRNA-dTYR-L87T,按如下项目进行RNA检验合格:(i) Various circular RNA molecules were successfully prepared (see Table 3), numbered as cmRNA-dTYR, cmRNA-hTYR, cmRNA-mTYR, cmRNA-dTYR-ConA, cmRNA-dTYR-T113G, cmRNA-dTYR-K115T, cmRNA-dTYR-L87T, and RNA tests were performed as follows:
1)鉴定:各RNA进行基因测序合格,序列与目标序列一致。1) Identification: Each RNA was sequenced successfully and the sequence was consistent with the target sequence.
2)浓度分析:通过紫外分光光度计测定RNA的浓度,结果如表3。2) Concentration analysis: The concentration of RNA was measured by UV spectrophotometer. The results are shown in Table 3.
3)完整性分析:通过毛细管凝胶电泳(CGE)测定RNA纯度,均不低于80%,结果如表3和图1所示。3) Integrity analysis: The purity of RNA was determined by capillary gel electrophoresis (CGE), which was no less than 80%. The results are shown in Table 3 and Figure 1.
表3table 3
实施例3、犬黑色素瘤环状RNA疫苗的制备Example 3. Preparation of canine melanoma circular RNA vaccine
(1)配制溶液I:将阳离子脂质CMAX4、胆固醇(5-胆甾烯-3β-醇)、中性脂质DSPC(二硬脂酰磷脂酰胆碱)、PEG修饰脂质PEG-DMG(聚乙二醇-二肉豆蔻酸甘油酯)以脂质摩尔比50:38.5:10:1.5溶解于乙醇中,得到溶液I。(1) Preparation of solution I: cationic lipid CMAX4, cholesterol (5-cholesten-3β-ol), neutral lipid DSPC (distearoylphosphatidylcholine), and PEG-modified lipid PEG-DMG (polyethylene glycol-dimyristyl glyceride) were dissolved in ethanol at a lipid molar ratio of 50:38.5:10:1.5 to obtain solution I.
其中阳离子脂质CMAX4(4-[(3-{[3-({3-[双(3-{4-[(2-丁基辛酰基)氧基]丁氧基}-3-氧基丙基)氨基]丙基}(甲基)氨基)丙基](3-{4-[(2-丁基辛酰基)氧基]丁氧基}-3-氧基丙基)氨基}丙氧基)氧基]丁基2-辛酸丁酯)购自苏州科锐迈德生物医药科技有限公司,胆固醇(5-胆甾烯-3β-醇)、中性脂质DSPC(二硬脂酰磷脂酰胆碱)、PEG修饰脂质PEG-DMG(聚乙二醇-二肉豆蔻酸甘油酯)购自艾伟拓(上海)医药科技有限公司。Among them, the cationic lipid CMAX4 (4-[(3-{[3-({3-[bis(3-{4-[(2-butyloctanoyl)oxy]butoxy}-3-oxypropyl)amino]propyl}(methyl)amino)propyl](3-{4-[(2-butyloctanoyl)oxy]butoxy}-3-oxypropyl)amino}propoxy)oxy]butyl 2-octanoate) was purchased from Suzhou Coremade Biopharmaceutical Technology Co., Ltd., and cholesterol (5-cholesten-3β-ol), neutral lipid DSPC (distearoylphosphatidylcholine), and PEG-modified lipid PEG-DMG (polyethylene glycol-dimyristylglycerol) were purchased from Avituo (Shanghai) Pharmaceutical Technology Co., Ltd.
(2)配制溶液II:将实施例2中制备的环状RNA分别溶解于pH 4.0的10mM柠檬酸缓冲盐水溶液中,稀释至终浓度为200μg/mL,得到溶液II。(2) Preparation of Solution II: The circular RNA prepared in Example 2 was dissolved in a 10 mM citric acid buffered saline solution at pH 4.0 and diluted to a final concentration of 200 μg/mL to obtain Solution II.
(3)使用微流控技术将溶液I和溶液II以体积比1:3的比例快速混合并使用切向流技术将缓冲环境置换成pH 7.4的PBS,以除去乙醇,制备得到LNP-mRNA。(3) Using microfluidics technology, solution I and solution II were quickly mixed in a volume ratio of 1:3, and the buffer environment was replaced with PBS with a pH of 7.4 using tangential flow technology to remove ethanol, thereby preparing LNP-mRNA.
(4)添加冷冻保护剂:使用Quant-iTTMRiboGreenTMRNA Assay Kit(InvitrogenTMR11490)试剂盒测定制备得到的LNP-mRNA中mRNA浓度,计算包封率,将LNP-mRNA溶液稀释至50ug/ml,并加入蔗糖至终浓度为8%(w/v),经无菌过滤后分装冻存,分别得到环状RNA疫苗V-dTYR,V-hTYR,V-mTYR,V-dTYR-ConA,V-dTYR-T113G,V-dTYR-K115T,V-dTYR-L87T。(4) Adding cryoprotectant: Use Quant-iT ™ RiboGreen ™ RNA Assay Kit (Invitrogen ™ R11490) to determine the mRNA concentration in the prepared LNP-mRNA, calculate the encapsulation efficiency, dilute the LNP-mRNA solution to 50 ug/ml, and add sucrose to a final concentration of 8% (w/v). After sterile filtration, the solution was divided and frozen to obtain the circular RNA vaccines V-dTYR, V-hTYR, V-mTYR, V-dTYR-ConA, V-dTYR-T113G, V-dTYR-K115T, and V-dTYR-L87T, respectively.
(5)在Zeta电位-激光粒度仪Malvern Zetasizer Nano-ZEN 3600(Malvern)上采用动态光散射法测量七种环状RNA疫苗的LNP颗粒的粒径、多分散性指数PDI、表面电位。结果见表4:(5) The particle size, polydispersity index (PDI), and surface potential of the LNP particles of the seven circular RNA vaccines were measured using a dynamic light scattering method on a Zeta potential-laser particle size analyzer Malvern Zetasizer Nano-ZEN 3600 (Malvern). The results are shown in Table 4:
表4Table 4
实施例4、犬免疫及效果检测Example 4, Canine Immunization and Effect Detection
7-8月龄比格犬随机分为8组,每组3只,将实施例3制备得到的环状RNA疫苗,进行肌肉免疫,接种剂量为50ug/只,以PBS为阴性对照,分别在0周和3周进行免疫,免疫后第35天采集血液,使用淋巴细胞分离液(碧云天)分离血液中PBMC,使用犬IFN-gamma ELISPOT试剂盒(R&D systems)检测抗原特异性T细胞数量。多肽池为犬酪氨酸酶10aa,5aa overlap多肽片段,由金斯瑞生物合成。多肽池刺激浓度为5ug/孔。PBMC细胞铺板浓度为1*10E5/孔,多肽刺激培养72h后进行反应显色。ELISPOT检测板通过免疫斑点分析仪进行自动采集、计数和分析,结果如图2。结果显色,本发明优化的增强犬酪氨酸酶抗原具有更高的特异性T细胞激活水平。免疫期间,各组实验犬生长良好,无毒副作用。7-8 month old beagles were randomly divided into 8 groups, 3 in each group, and the circular RNA vaccine prepared in Example 3 was immunized with muscle, the vaccination dose was 50ug/dog, PBS was used as negative control, and immunization was performed at 0 weeks and 3 weeks, respectively. Blood was collected on the 35th day after immunization, PBMC in the blood was separated using lymphocyte separation fluid (Biyuntian), and the number of antigen-specific T cells was detected using a canine IFN-gamma ELISPOT kit (R&D systems). The polypeptide pool is a canine tyrosinase 10aa, 5aa overlap polypeptide fragment, which is synthesized by GenScript Bio. The polypeptide pool stimulation concentration is 5ug/well. The PBMC cell plating concentration is 1*10E5/well, and the reaction color is developed after 72h of polypeptide stimulation culture. The ELISPOT detection plate is automatically collected, counted and analyzed by an immunospot analyzer, and the results are shown in Figure 2. As a result, the enhanced canine tyrosinase antigen optimized by the present invention has a higher specific T cell activation level. During the immunization period, each group of experimental dogs grew well without toxic side effects.
实施例5、犬黑色素瘤环状RNA疫苗对犬黑色素瘤的治疗效果Example 5. Therapeutic effect of canine melanoma circular RNA vaccine on canine melanoma
筛选20只患有黑色素瘤的患病犬,平均年龄为9岁(7-15岁),品种包括拉布拉多猎犬,金毛猎犬,牧羊犬,哈士奇,萨摩耶犬,阿拉斯加犬。根据TNM肿瘤分期,所有患病犬均为II-III期。将所有患病犬分为四组,每组5只,分别肌肉注射环状RNA疫苗V-dTYR、V-hTYR、V-dTYR-K115T,50ug/只/次,和PBS,1ml/只/次,每月免疫一次,连续免疫6次。给药结束后,继续观察一年,实验中通过计算机断层扫描每月测量一次肿瘤大小评估肿瘤负荷,比较完全缓解率和客观缓解率;完全缓解(CR):计算机断层扫描检测不到肿瘤;部分缓解(PR):肿瘤直径减少30%以上。完全缓解率=完全缓解的患病犬/总病犬×100%;客观缓解率=完全缓解患病犬+部分缓解患病犬/总病犬×100%。治疗效果如表5。另外,统计所有患病犬生存情况,实验结束时统计所有组别生存率。患病犬生存率如图3。治疗结果显色,本发明优化抗原在治疗期间及后续观察期对肿瘤抑制更有效,肿瘤复发更少,拥有更长的生存期。Twenty dogs with melanoma were screened, with an average age of 9 years (7-15 years), including Labrador Retriever, Golden Retriever, Shepherd, Husky, Samoyed, and Alaskan dog. According to the TNM tumor staging, all dogs were in stage II-III. All dogs were divided into four groups, 5 in each group, and intramuscularly injected with circular RNA vaccines V-dTYR, V-hTYR, and V-dTYR-K115T, 50ug/dog/time, and PBS, 1ml/dog/time, once a month for 6 consecutive times. After the end of the administration, the dogs were observed for one year. During the experiment, the tumor size was measured once a month by computed tomography to evaluate the tumor burden, and the complete remission rate and objective remission rate were compared; complete remission (CR): no tumor was detected by computed tomography; partial remission (PR): the tumor diameter was reduced by more than 30%. Complete remission rate = dogs with complete remission/total dogs × 100%; objective remission rate = dogs with complete remission + dogs with partial remission/total dogs × 100%. The treatment effect is shown in Table 5. In addition, the survival of all sick dogs was counted, and the survival rate of all groups was counted at the end of the experiment. The survival rate of sick dogs is shown in Figure 3. The treatment results show that the optimized antigen of the present invention is more effective in tumor inhibition during the treatment period and the subsequent observation period, with less tumor recurrence and longer survival.
表5table 5
以上对本发明的具体实施例进行了描述。需要理解的是,本发明并不局限于上述特定实施方式,本领域技术人员可以在权利要求的范围内做出各种变形或修改,这并不影响本发明的实质内容。The above describes the specific embodiments of the present invention. It should be understood that the present invention is not limited to the above specific embodiments, and those skilled in the art may make various modifications or variations within the scope of the claims, which do not affect the essence of the present invention.
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