CN117858708A - Discovery of F-ATP synthase inhibitors for treatment of mycobacterial abscess diseases - Google Patents
Discovery of F-ATP synthase inhibitors for treatment of mycobacterial abscess diseases Download PDFInfo
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Abstract
Description
技术领域Technical Field
本发明涉及化合物用于治疗与脓肿分枝杆菌(Mycobacterium abscessus)感染相关的疾病的用途。The present invention relates to the use of compounds for treating diseases associated with Mycobacterium abscessus infection.
背景技术Background technique
本说明书中对先前公开的文件的列出或讨论不一定应被视为承认该文件是现有技术的一部分或是公知常识。The listing or discussion of a previously published document in this specification should not necessarily be taken as an admission that the document is part of the prior art or is common general knowledge.
脓肿分枝杆菌(Mycobacterium abscessus,Mab)复合群是一组快速生长的非结核分枝杆菌(NTM),其可以导致严重的人疾病,包括呼吸系统、皮肤和软组织疾患,尤其是在囊性纤维化和老年患者中。NTM感染的全球流行率、发病率和死亡率正在增加,并且经常超过发达国家TB感染的全球发生率。Mab是新加坡的主要NTM病原体,且占快速增长的NTM引起的所有肺部感染的约80%。Mab已被分类为三个亚种,脓肿分枝杆菌脓肿亚种(Mycobacteriumabscessus subsp.abscessus,狭义)、脓肿分枝杆菌马赛亚种(Mycobacterium abscessussubsp.massiliense)和脓肿分枝杆菌博莱亚种(Mycobacterium abscessussubsp.bolletii)。它们对抗微生物剂具有不同敏感性,并且脓肿分枝杆菌脓肿亚种是最普遍且最具耐药性的,并被称为“噩梦”细菌。Mab治疗在很大程度上是经验性的,包括用于初始阶段的阿米卡星、cefocetin、克拉霉素和亚胺培南方案,以及用于持续阶段的口服抗微生物剂方案,总持续时间为18至24个月。即使采用如此复杂的方案和长持续时间,Mab疾病的结局仍然很差(40-50%),伴有严重的药物相关毒性和副作用。此外,大多数药物不是杀菌性的。Mycobacterium abscessus (Mycobacterium abscessus, Mab) complex is a group of fast-growing nontuberculous mycobacteria (NTM), which can cause serious human diseases, including respiratory system, skin and soft tissue diseases, especially in cystic fibrosis and elderly patients. The global prevalence, morbidity and mortality of NTM infection are increasing, and often exceed the global incidence of TB infection in developed countries. Mab is the main NTM pathogen in Singapore, and accounts for about 80% of all lung infections caused by fast-growing NTM. Mab has been classified into three subspecies, Mycobacterium abscessus subspecies (Mycobacteriumabscessus subsp.abscessus, narrow sense), Mycobacterium abscessus subspecies (Mycobacterium abscessussubsp.massiliense) and Mycobacterium abscessus subspecies (Mycobacterium abscessussubsp.bolletii). They have different sensitivities to antimicrobial agents, and Mycobacterium abscessus subspecies is the most common and most resistant, and is called "nightmare" bacteria. Mab therapy is largely empirical, including a regimen of amikacin, cefocetin, clarithromycin, and imipenem for the initial phase, and a regimen of oral antimicrobials for the continuation phase, with a total duration of 18 to 24 months. Even with such complex regimens and long duration, the outcome of Mab disease remains poor (40-50%), with severe drug-related toxicity and side effects. In addition, most drugs are not bactericidal.
众所周知,Mab对标准抗TB剂和大多数抗微生物剂具有耐药性。该病原体对消毒剂也具有耐药性,并因此可以导致手术后(postsurgical)和术后(postprocedural)感染。由NTM(包括快速生长的细菌脓肿分枝杆菌(M.abscessus))引起的疾病的治疗是成问题的,由于细胞壁的低渗透性、生物膜形成、药物激活酶不足、中和药物或修饰其特异性靶标的许多酶、自然发生的多态性以及药物外排泵的诱导。这种泵使用由电子传递链(ETC)产生的三磷酸腺苷(ATP)或质子动力驱动的能量形式,该电子传递链在F1F0-ATP合酶的氧化磷酸化过程中产生用于使二磷酸腺苷(ADP)加Pi缩合以形成ATP的质子动力。氧化磷酸化是病原体中ATP合成的主要过程,使ETC的酶和F1F0-ATP合酶作为药物靶标具有吸引力,如影响ETC的NADH脱氢酶(NDH-2)的氯法齐明(CFZ),或靶向脓肿分枝杆菌的F1F0 ATP合酶的再利用抗结核(TB)药物贝达喹啉(BDQ)及其衍生物TBAJ876所示。然而,尽管这些化合物是强效生长抑制剂,但它们对脓肿分枝杆菌主要是抑菌作用。Mabs are well known to be resistant to standard anti-TB agents and most antimicrobials. The pathogen is also resistant to disinfectants and can therefore cause postsurgical and postprocedural infections. Treatment of diseases caused by NTM, including the fast-growing bacterium Mycobacterium abscessus, is problematic due to low permeability of the cell wall, biofilm formation, insufficient drug-activated enzymes, numerous enzymes that neutralize the drug or modify its specific target, naturally occurring polymorphisms, and induction of drug efflux pumps. Such pumps use energy forms driven by adenosine triphosphate (ATP) or proton motive force generated by the electron transport chain (ETC), which generates the proton motive force used to condense adenosine diphosphate (ADP) plus Pi to form ATP during oxidative phosphorylation of the F1F0 -ATP synthase. Oxidative phosphorylation is the major process for ATP synthesis in pathogens, making enzymes of the ETC and the F1F0 - ATP synthase attractive as drug targets, as shown by clofazimine (CFZ), which affects the NADH dehydrogenase (NDH-2) of the ETC, or the repurposing of the anti-tuberculosis (TB) drug bedaquiline (BDQ) and its derivative TBAJ876, which targets the F1F0 ATP synthase of M. abscessus. However, although these compounds are potent growth inhibitors, their effects on M. abscessus are mainly bacteriostatic.
因此,需要发现新的F-ATP合酶抑制剂来治疗脓肿分枝杆菌疾病。Therefore, there is a need to discover new F-ATP synthase inhibitors for the treatment of M. abscessus disease.
发明内容Summary of the invention
已出乎意料地发现许多化合物可以治疗脓肿分枝杆菌疾病。现将参考以下编号的条目来讨论本发明的各方面和实施方式。It has unexpectedly been discovered that a number of compounds can treat Mycobacterium abscessus disease. Various aspects and embodiments of the present invention will now be discussed with reference to the following numbered items.
1.式I的化合物在制备用于治疗由脓肿分枝杆菌引起的细菌感染的药物中的用途:1. Use of a compound of formula I in the preparation of a medicament for treating bacterial infection caused by Mycobacterium abscessus:
其中:in:
R1和Ra各自独立地表示H、卤素、C1-C4烷基、C1-C4烷氧基或OH;R 1 and Ra each independently represent H, halogen, C 1 -C 4 alkyl, C 1 -C 4 alkoxy or OH;
R2表示H、未取代的或被羟基基团取代的C1-C4烷基,或 R2 represents H, unsubstituted or substituted C1 - C4 alkyl, or
-CH2CO2Et; -CH2CO2Et ;
R3表示H或C1-C4烷基;R 3 represents H or C 1 -C 4 alkyl;
X、Y和Z各自独立地表示CR4或N;X, Y and Z each independently represent CR 4 or N;
每个R4独立地表示H、卤素、C1-C4烷基或C1-C4烷氧基、或其盐或溶剂化物。Each R 4 independently represents H, halogen, C 1 -C 4 alkyl or C 1 -C 4 alkoxy, or a salt or solvate thereof.
2.如条目1所述的式I的化合物或其盐或溶剂化物,用于治疗由脓肿分枝杆菌引起的细菌感染。2. A compound of formula I or a salt or solvate thereof as described in item 1 for use in treating bacterial infection caused by Mycobacterium abscessus.
3.一种治疗由脓肿分枝杆菌引起的细菌感染的方法,其包括向有此需要的受试者提供药学上有效量的如条目1所述的式I的化合物或其盐或溶剂化物的步骤。3. A method for treating a bacterial infection caused by Mycobacterium abscessus, comprising the step of providing a subject in need thereof with a pharmaceutically effective amount of a compound of formula I as described in item 1 or a salt or solvate thereof.
4.根据条目1所述的用途、根据条目2所述的用途的化合物或根据条目3所述的方法,其中,该式I的化合物是其中R2表示H、未取代的或被羟基基团取代的C1-C4烷基的化合物。4. The use according to item 1, the compound for use according to item 2 or the method according to item 3, wherein the compound of formula I is a compound in which R 2 represents H, unsubstituted or substituted C 1 -C 4 alkyl.
5.根据条目1或条目4所述的用途、根据条目2或条目4所述的用途的化合物或根据条目3或条目4所述的方法,其中,R3表示H、CH3或CH2CH3。5. The use according to item 1 or item 4, the compound for the use according to item 2 or item 4, or the method according to item 3 or item 4, wherein R 3 represents H, CH 3 or CH 2 CH 3 .
6.根据条目1或条目4至5所述的用途、根据条目2或条目4至5所述的用途的化合物或根据条目3至5所述的方法,其中,Ra是H并且R1是Br。6. The use according to item 1 or items 4 to 5, the compound for the use according to item 2 or items 4 to 5, or the method according to items 3 to 5, wherein Ra is H and R1 is Br.
7.根据条目1或条目4至6所述的用途、根据条目2或条目4至6所述的用途的化合物或根据条目3至6所述的方法,其中,X是N。7. The use according to item 1 or items 4 to 6, the compound for the use according to item 2 or items 4 to 6, or the method according to items 3 to 6, wherein X is N.
8.根据条目1或条目4至7所述的用途、根据条目2或条目4至7所述的用途的化合物或根据条目3至7所述的方法,其中,Z是N。8. The use according to item 1 or items 4 to 7, the compound for the use according to item 2 or items 4 to 7 or the method according to items 3 to 7, wherein Z is N.
9.根据条目1或条目4至8所述的用途、根据条目2或条目4至8所述的用途的化合物或根据条目3至8所述的方法,其中,Y是C-CH3。9. The use according to item 1 or items 4 to 8, the compound for the use according to item 2 or items 4 to 8, or the method according to items 3 to 8, wherein Y is C-CH 3 .
10.根据条目1或条目4至9所述的用途、根据条目2或条目4至9所述的用途的化合物或根据条目3至9所述的方法,其中,该式I的化合物或其盐或溶剂化物选自以下列表:10. The use according to item 1 or items 4 to 9, the compound according to item 2 or items 4 to 9, or the method according to items 3 to 9, wherein the compound of formula I or a salt or solvate thereof is selected from the following list:
任选地,其中,该式I的化合物或其盐或溶剂化物选自以下列表:Optionally, the compound of formula I or its salt or solvate is selected from the following list:
11.根据条目1或条目4至10所述的用途、根据条目2或条目4至10所述的用途的化合物或根据条目3至10所述的方法,其中,该细菌感染以呼吸系统、皮肤或软组织疾患中的一种或多种(例如选自肺部感染、肌萎缩侧索硬化和支气管扩张的组中的一种或多种)的形式呈现。11. The use according to item 1 or items 4 to 10, the compound for use according to item 2 or items 4 to 10, or the method according to items 3 to 10, wherein the bacterial infection presents in the form of one or more respiratory, skin or soft tissue disorders (e.g. one or more selected from the group consisting of lung infection, amyotrophic lateral sclerosis and bronchiectasis).
12.如条目1和4至10中任一项限定的式I的化合物或其盐或溶剂化物以及其他治疗剂或其盐或溶剂化物在制备用于治疗由脓肿分枝杆菌引起的细菌感染的药物中的用途,其中,该式I的化合物与该其他治疗剂顺序、同时或合并给药。12. Use of a compound of formula I or a salt or solvate thereof as defined in any one of items 1 and 4 to 10 and another therapeutic agent or a salt or solvate thereof in the preparation of a medicament for treating a bacterial infection caused by Mycobacterium abscessus, wherein the compound of formula I and the other therapeutic agent are administered sequentially, simultaneously or in combination.
13.如条目1和4至10中任一项限定的式I的化合物或其盐或溶剂化物,用于治疗由脓肿分枝杆菌引起的细菌感染的用途,其中,该式I的化合物与其他治疗剂或其盐或溶剂化物顺序、同时或合并给药。13. Use of a compound of formula I or a salt or solvate thereof as defined in any one of items 1 and 4 to 10 for treating a bacterial infection caused by Mycobacterium abscessus, wherein the compound of formula I is administered sequentially, simultaneously or in combination with the other therapeutic agent or a salt or solvate thereof.
14.一种治疗由脓肿分枝杆菌引起的细菌感染的方法,该方法包括向需要这种治疗的患者给药药学上有效量的如条目1和4至10中任一项限定的式I的化合物或其盐或溶剂化物,以及其他治疗剂或其盐或溶剂化物。14. A method for treating a bacterial infection caused by Mycobacterium abscessus, which method comprises administering to a patient in need of such treatment a pharmaceutically effective amount of a compound of formula I as defined in any one of items 1 and 4 to 10, or a salt or solvate thereof, and another therapeutic agent, or a salt or solvate thereof.
15.根据条目12所述的用途、根据条目13所述的用途的化合物或根据条目14所述的方法,其中,该其他治疗剂选自由口服抗微生物剂、阿米卡星、cefocetin、克拉霉素、氯法齐明和亚胺培南组成的组中的一种或多种,任选地其中,该其他治疗剂是氯法齐明。15. The use according to item 12, the compound for use according to item 13 or the method according to item 14, wherein the other therapeutic agent is selected from one or more of the group consisting of oral antimicrobials, amikacin, cefocetin, clarithromycin, clofazimine and imipenem, optionally wherein the other therapeutic agent is clofazimine.
16.一种药物组合物,其包括如条目1和4至10中任一项限定的式I的化合物或其盐或溶剂化物,以及其他治疗剂或其盐或溶剂化物,其中,该其他治疗剂选自由口服抗微生物剂、阿米卡星、cefocetin、克拉霉素、氯法齐明和亚胺培南组成的组中的一种或多种,任选地其中,该其他治疗剂是氯法齐明。16. A pharmaceutical composition comprising a compound of formula I as defined in any one of items 1 and 4 to 10, or a salt or solvate thereof, and another therapeutic agent, or a salt or solvate thereof, wherein the other therapeutic agent is selected from one or more of the group consisting of oral antimicrobials, amikacin, cefocetin, clarithromycin, clofazimine and imipenem, optionally wherein the other therapeutic agent is clofazimine.
附图说明BRIEF DESCRIPTION OF THE DRAWINGS
图1描绘了GaMF1敏感性测试。(A)GaMF1的结构;(B)当在阳离子调节的Mueller-Hinton(CAMH)培养基上生长时GaMF1对脓肿分枝杆菌脓肿亚种ATCC19977(脓肿分枝杆菌)生长的影响。实验重复进行三次;(C)GaMF1对CAMH肉汤中的临床分离株脓肿分枝杆菌Bamboo的影响。实验重复进行三次。P<0.0001。使用单样本t和Wilcoxon检验对小图B至D中的实验进行统计分析(Motulsky,H.&Christopoulos,A.,2003.Fitting Models toBiological Data Using Linear and Nonlinear Regression:A Practical Guide toCurve Fitting.GraphPad Software Inc.,San Diego CA);和(D)GaMF1对脓肿分枝杆菌的六天杀伤动力学。在存在指定浓度的GaMF1的情况下,在液体培养物(CAMH培养基)中生长细菌。实验重复两次,并且特征相似。P<0.001。使用普通单因素方差分析(ANOVA)结合Bartlett’s检验对实验进行统计分析。Figure 1 depicts GaMF1 sensitivity testing. (A) The structure of GaMF1; (B) The effect of GaMF1 on the growth of Mycobacterium abscessus subspecies ATCC19977 (Mycobacterium abscessus) when grown on cation-regulated Mueller-Hinton (CAMH) medium. The experiment was repeated three times; (C) The effect of GaMF1 on the clinical isolate Mycobacterium abscessus Bamboo in CAMH broth. The experiment was repeated three times. P<0.0001. The experiments in panels B to D were statistically analyzed using a single sample t and Wilcoxon test (Motulsky, H. & Christopoulos, A., 2003. Fitting Models to Biological Data Using Linear and Nonlinear Regression: A Practical Guide to Curve Fitting. GraphPad Software Inc., San Diego CA); and (D) The six-day killing kinetics of GaMF1 against Mycobacterium abscessus. Bacteria were grown in liquid culture (CAMH medium) in the presence of a specified concentration of GaMF1. The experiment was repeated twice and the characteristics were similar. P < 0.001. The experiment was statistically analyzed using ordinary one-way analysis of variance (ANOVA) combined with Bartlett's test.
图2描绘了7H9培养基中的GaMF1敏感性测试。(A)在Middlebrook7H9肉汤中生长时GaMF1对三种Mab亚种(脓肿分枝杆菌脓肿亚种、脓肿分枝杆菌博莱亚种和脓肿分枝杆菌马赛亚种)生长的影响。实验已重复进行三次;(B)与7H9培养基上临床分离株脓肿分枝杆菌Bamboo的比较。***:P<0.0001,使用单样本t-和Wilcoxon检验对实验A-B进行统计分析(Motulsky,H.&Christopoulos,A.,2003.Fitting Models to Biological Data UsingLinear and Nonlinear Regression:APractical Guide to Curve Fitting.GraphPadSoftware Inc.,San Diego CA);(C)GaMF1对脓肿分枝杆菌脓肿亚种生长的初始三天杀伤动力学。在存在指定浓度的GaMF1的情况下,在液体培养物(7H9)中生长细菌。实验重复两次,并且特征相似。****:P<0.0001,使用普通单因素ANOVABartlett’s检验进行统计分析。Figure 2 depicts GaMF1 susceptibility testing in 7H9 medium. (A) Effect of GaMF1 on the growth of three Mab subspecies (M. abscessus subspecies, M. abscessus subspecies, and M. abscessus subspecies) when grown in Middlebrook 7H9 broth. The experiment has been repeated three times; (B) Comparison with clinical isolate M. abscessus Bamboo on 7H9 medium. ***: P < 0.0001, statistical analysis of experiments A-B using single sample t- and Wilcoxon tests (Motulsky, H. & Christopoulos, A., 2003. Fitting Models to Biological Data Using Linear and Nonlinear Regression: A Practical Guide to Curve Fitting. GraphPad Software Inc., San Diego CA); (C) Initial three-day killing kinetics of GaMF1 on the growth of M. abscessus subspecies. Bacteria were grown in liquid culture (7H9) in the presence of the specified concentrations of GaMF1. The experiment was repeated twice and the characteristics were similar. ****: P < 0.0001, statistical analysis was performed using ordinary one-way ANOVA Bartlett’s test.
图3描绘了GaMF1抑制氧化磷酸化。(A)GaMF1对脓肿分枝杆菌细胞的细胞内ATP合成的抑制。通过向细胞中添加BacTiter-Glo(Promega)来测量细胞的ATP含量。总ATP含量与相对发光单元(RLU)的数量成正比。实验重复进行三次;和(B)通过GaMF1抑制脓肿分枝杆菌内-外膜囊泡(IMV)中的使用电子供体烟酰胺腺嘌呤二核苷酸(NADH)的ATP合成。在添加CellTiter-Glo(Promega)后,通过脓肿分枝杆菌IMV的ATP合成被测量为发光。实验重复进行三次。P<0.0001。使用单样本t和Wilcoxon检验对小图A和B中的两个实验进行统计分析(Motulsky,H.&Christopoulos,A.,2003.Fitting Models to Biological Data UsingLinear and Nonlinear Regression:APractical Guide to Curve Fitting.GraphPadSoftware Inc.,San Diego CA)。FIG3 depicts GaMF1 inhibiting oxidative phosphorylation. (A) Inhibition of intracellular ATP synthesis of Mycobacterium abscessus cells by GaMF1. The ATP content of the cells was measured by adding BacTiter-Glo (Promega) to the cells. The total ATP content is proportional to the number of relative luminescent units (RLU). The experiment was repeated three times; and (B) ATP synthesis using electron donor nicotinamide adenine dinucleotide (NADH) in Mycobacterium abscessus inner-outer membrane vesicles (IMV) was inhibited by GaMF1. After adding CellTiter-Glo (Promega), ATP synthesis by Mycobacterium abscessus IMV was measured as luminescence. The experiment was repeated three times. P<0.0001. Statistical analysis of the two experiments in panels A and B was performed using single sample t and Wilcoxon tests (Motulsky, H. & Christopoulos, A., 2003. Fitting Models to Biological Data Using Linear and Nonlinear Regression: A Practical Guide to Curve Fitting. GraphPad Software Inc., San Diego CA).
图4描绘了在7H9培养基中,GaMF1与抗生素CFZ、利福布汀和阿米卡星组合的效力增加。(A)GaMF1(圆形)与3.4mM(倒三角形)、6.8mM(空心方形)或27.2μM(空心圆形)CFZ组合抑制脓肿分枝杆菌生长;(B)GaMF1(圆形)与1μM(正方形)或4.2μM(三角形)利福布汀组合对脓肿分枝杆菌的敏感性;和(C)阿米卡星(5μM[方形])增加对脓肿分枝杆菌脓肿亚种的GaMF1生长抑制的效力。P<0.0001。使用双因素ANOVA对所提出的所有实验进行统计分析。Figure 4 depicts the increased potency of GaMF1 in combination with the antibiotics CFZ, rifabutin, and amikacin in 7H9 medium. (A) GaMF1 (circles) inhibited the growth of Mycobacterium abscessus in combination with 3.4 mM (inverted triangles), 6.8 mM (open squares), or 27.2 μM (open circles) CFZ; (B) GaMF1 (circles) in combination with 1 μM (squares) or 4.2 μM (triangles) rifabutin sensitivity to Mycobacterium abscessus; and (C) Amikacin (5 μM [squares]) increased the potency of GaMF1 growth inhibition of Mycobacterium abscessus subsp. abscessus. P < 0.0001. Statistical analysis was performed for all experiments presented using two-way ANOVA.
图5描绘了GaMF1和利福布汀的杀伤效力。GaMF1和GaMF1加利福布汀对脓肿分枝杆菌脓肿亚种生长的初始六天杀伤动力学。在存在指定浓度的GaMF1和利福布汀的情况下,在液体培养物(7H9)中生长细菌。实验重复两次,并且特征相似。P<0.0001。使用普通单因素ANOVA与Bartlett’s检验对实验进行统计分析。FIG5 depicts the killing efficacy of GaMF1 and rifabutin. Initial six-day killing kinetics of GaMF1 and GaMF1 plus rifabutin on the growth of Mycobacterium abscessus subsp. abscessus. Bacteria were grown in liquid culture (7H9) in the presence of the indicated concentrations of GaMF1 and rifabutin. The experiment was repeated twice and the characteristics were similar. P<0.0001. The experiments were statistically analyzed using ordinary one-way ANOVA with Bartlett's test.
图6描绘了F1FO ATP合酶是由FO马达(a:c9)、F1-引擎(α3:β3:γ:δ:ε)和外周柄(b-δ:b’)组成的分子引擎。FIG6 depicts that the F1FO ATP synthase is a molecular engine composed of the F0 motor (a: c9 ), the F1 -engine ( α3 : β3 :γ:δ:ε) and the peripheral stalk (b-δ:b').
具体实施方式Detailed ways
如上所述,本发明涉及一组可以治疗由脓肿分枝杆菌引起的感染的化合物的发现。As noted above, the present invention relates to the discovery of a group of compounds that can treat infections caused by M. abscessus.
因此,在本发明的第一方面,提供了式I的化合物在制备用于治疗由脓肿分枝杆菌引起的细菌感染的药物中的用途:Therefore, in a first aspect of the present invention, there is provided the use of a compound of formula I in the preparation of a medicament for treating a bacterial infection caused by Mycobacterium abscessus:
其中:in:
R1和Ra各自独立地表示H、卤素、C1-C4烷基、C1-C4烷氧基或OH;R 1 and Ra each independently represent H, halogen, C 1 -C 4 alkyl, C 1 -C 4 alkoxy or OH;
R2表示H、未取代的或被羟基基团取代的C1-C4烷基,或-CH2CO2Et;R 2 represents H, C 1 -C 4 alkyl which is unsubstituted or substituted by a hydroxyl group, or -CH 2 CO 2 Et;
R3表示H或C1-C4烷基;R 3 represents H or C 1 -C 4 alkyl;
X、Y和Z各自独立地表示CR4或N;X, Y and Z each independently represent CR 4 or N;
每个R4独立地表示H、卤素、C1-C4烷基或C1-C4烷氧基、或其盐或溶剂化物。Each R 4 independently represents H, halogen, C 1 -C 4 alkyl or C 1 -C 4 alkoxy, or a salt or solvate thereof.
在本发明的第二方面,提供了如上所述的式I的化合物或其盐或溶剂化物,用于治疗由脓肿分枝杆菌引起的细菌感染。In a second aspect of the present invention, there is provided a compound of formula I as described above or a salt or solvate thereof for use in treating bacterial infection caused by Mycobacterium abscessus.
在本发明的第三方面,提供了治疗由脓肿分枝杆菌引起的细菌感染的方法,其包括向有需要的受试者提供药学有效量的如上所述的式I的化合物或其盐或溶剂化物的步骤。In the third aspect of the present invention, there is provided a method for treating bacterial infection caused by Mycobacterium abscessus, comprising the step of providing a pharmaceutically effective amount of a compound of formula I as described above or a salt or solvate thereof to a subject in need thereof.
在本文的实施方式中,词语“包括”可以被解释为需要所提及的特征,但不限制其他特征的存在。替代地,词语“包括”也可以涉及其中旨在仅所列举的组分/特征存在的情况(例如,词语“包括”可以被短语“由……组成”或“基本上由……组成”替换)。明确设想了无论是广义的解释还是狭义的解释两者都可以适用于本发明的所有方面和实施方式。换句话说,词语“包括”及其同义词可被短语“由……组成”或短语“基本上由……组成”或其同义词所替换,并且反之亦然。In the embodiments herein, the word "comprising" may be interpreted as requiring the features mentioned, but not limiting the presence of other features. Alternatively, the word "comprising" may also refer to situations in which only the listed components/features are intended to be present (e.g., the word "comprising" may be replaced by the phrase "consisting of" or "consisting essentially of". It is expressly contemplated that both the broad and narrow interpretations may apply to all aspects and embodiments of the present invention. In other words, the word "comprising" and its synonyms may be replaced by the phrase "consisting of" or the phrase "consisting essentially of" or their synonyms, and vice versa.
本文(在本发明的任何方面或实施方式中)提及式I的化合物包括提及这样的化合物本身、这样的化合物的互变异构体以及这样的化合物的药学上可接受的盐或溶剂化物。Reference herein (in any aspect or embodiment of the invention) to a compound of Formula I includes reference to such compound per se, tautomers of such compound, and pharmaceutically acceptable salts or solvates of such compound.
可以被提及的药学上可接受的盐包括酸加成盐和碱加成盐。这样的盐可以通过常规方法形成,例如通过式I的化合物的游离酸或游离碱形式与一种或多种当量的合适的酸或碱的反应,任选地在溶剂中或在盐不溶于其中的介质中,然后使用标准技术(例如在真空中、通过冷冻干燥或通过过滤)除去所述溶剂或所述介质。盐也可以通过例如使用合适的离子交换树脂将盐形式的式I的化合物的抗衡离子与另一抗衡离子交换来制备。Pharmaceutically acceptable salts that may be mentioned include acid addition salts and base addition salts. Such salts may be formed by conventional methods, for example by reaction of a free acid or free base form of a compound of formula I with one or more equivalents of a suitable acid or base, optionally in a solvent or in a medium in which the salt is insoluble, then removing the solvent or medium using standard techniques (e.g., in a vacuum, by freeze drying or by filtering). Salts may also be prepared by exchanging the counter ion of a compound of formula I in salt form with another counter ion, for example, using a suitable ion exchange resin.
药学上可接受的盐的实例包括衍生自矿物酸和有机酸的酸加成盐,以及衍生自金属诸如钠、镁或优选钾和钙的盐。Examples of pharmaceutically acceptable salts include acid addition salts derived from mineral and organic acids, and salts derived from metals such as sodium, magnesium or, preferably, potassium and calcium.
酸加成盐的实例包括用以下形成的酸加成盐:乙酸、2,2-二氯乙酸、己二酸、海藻酸、芳基磺酸(例如苯磺酸、萘-2-磺酸、萘-1,5-二磺酸和对甲苯磺酸)、抗坏血酸(例如L-抗坏血酸)、L-天冬氨酸、苯甲酸、4-乙酰氨基苯甲酸、丁酸、(+)樟脑酸、樟脑-磺酸、(+)-(1S)-樟脑-10-磺酸、癸酸、己酸、辛酸、肉桂酸、柠檬酸、环拉酸、十二烷基硫酸、乙烷-1,2-二磺酸、乙烷磺酸、2-羟基乙烷磺酸、甲酸、富马酸、半乳糖二酸、龙胆酸、葡庚糖酸、葡糖酸(例如D-葡糖酸)、葡糖醛酸(例如D-葡糖醛酸)、谷氨酸(例如L-谷氨酸)、α-氧代戊二酸、乙醇酸、马尿酸、氢溴酸、盐酸、氢碘酸、羟乙基磺酸、乳酸(例如(+)-L-乳酸和(±)-DL-乳酸)、乳糖酸、马来酸、苹果酸(例如(-)-L-苹果酸)、丙二酸、(±)-DL-扁桃酸、偏磷酸、甲磺酸、1-羟基-2-萘甲酸、烟酸、硝酸、油酸、乳清酸、草酸、棕榈酸、双羟萘酸、磷酸、丙酸、L-焦谷氨酸、水杨酸、4-氨基水杨酸、癸二酸、硬脂酸、琥珀酸、硫酸、单宁酸、酒石酸(例如(+)-L-酒石酸)、硫氰酸、十一烯酸和戊酸。Examples of acid addition salts include acid addition salts formed with acetic acid, 2,2-dichloroacetic acid, adipic acid, alginic acid, arylsulfonic acids (e.g., benzenesulfonic acid, naphthalene-2-sulfonic acid, naphthalene-1,5-disulfonic acid, and p-toluenesulfonic acid), ascorbic acid (e.g., L-ascorbic acid), L-aspartic acid, benzoic acid, 4-acetamidobenzoic acid, butyric acid, (+) camphoric acid, camphor-sulfonic acid, (+)-(1S)-camphor-10-sulfonic acid, decanoic acid, hexanoic acid, caprylic acid, cinnamic acid, citric acid, cyclamic acid, dodecylsulfuric acid, ethane-1,2-disulfonic acid, ethanesulfonic acid, 2-hydroxyethanesulfonic acid, formic acid, fumaric acid, galactaric acid, gentisic acid, glucoheptonic acid, gluconic acid (e.g., D-gluconic acid), glucuronic acid ( [0013] Examples of the invention include, but are not limited to, D-glucuronic acid), glutamic acid (e.g., L-glutamic acid), α-oxoglutaric acid, glycolic acid, hippuric acid, hydrobromic acid, hydrochloric acid, hydroiodic acid, isethionic acid, lactic acid (e.g., (+)-L-lactic acid and (±)-DL-lactic acid), lactobionic acid, maleic acid, malic acid (e.g., (-)-L-malic acid), malonic acid, (±)-DL-mandelic acid, metaphosphoric acid, methanesulfonic acid, 1-hydroxy-2-naphthoic acid, nicotinic acid, nitric acid, oleic acid, orotic acid, oxalic acid, palmitic acid, pamoic acid, phosphoric acid, propionic acid, L-pyroglutamic acid, salicylic acid, 4-aminosalicylic acid, sebacic acid, stearic acid, succinic acid, sulfuric acid, tannic acid, tartaric acid (e.g., (+)-L-tartaric acid), thiocyanic acid, undecylenic acid, and valeric acid.
盐的特定实例是衍生自以下的盐:矿物酸,诸如盐酸、氢溴酸、磷酸、偏磷酸、硝酸和硫酸;有机酸,诸如酒石酸、乙酸、柠檬酸、苹果酸、乳酸、富马酸、苯甲酸、乙醇酸、葡萄糖酸、琥珀酸、芳基磺酸;以及金属,诸如钠、镁,或者优选地,钾和钙。Specific examples of salts are those derived from mineral acids such as hydrochloric acid, hydrobromic acid, phosphoric acid, metaphosphoric acid, nitric acid and sulfuric acid; organic acids such as tartaric acid, acetic acid, citric acid, malic acid, lactic acid, fumaric acid, benzoic acid, glycolic acid, gluconic acid, succinic acid, arylsulfonic acids; and metals such as sodium, magnesium, or, preferably, potassium and calcium.
如上面所提及的,还被式I涵盖的是化合物的任何溶剂化物及其盐。优选的溶剂化物是通过将无毒药学上可接受的溶剂(以下称为溶剂化溶剂)的分子掺入本发明化合物的固态结构(例如晶体结构)中而形成的溶剂化物。这样的溶剂的实例包括水、醇(诸如乙醇、异丙醇和丁醇)和二甲基亚砜。溶剂化物可以通过用包含溶剂化溶剂的溶剂或溶剂混合物重结晶本发明的化合物来制备。在任何给定的情况下是否已经形成溶剂化物可以通过使用公知的标准技术诸如热重分析(TGE)、差示扫描量热法(DSC)和X射线晶体学对化合物的晶体进行分析来确定。As mentioned above, also encompassed by formula I are any solvates of the compound and their salts. Preferred solvates are solvates formed by incorporating molecules of a non-toxic pharmaceutically acceptable solvent (hereinafter referred to as a solvating solvent) into a solid state structure (e.g., a crystalline structure) of the compounds of the invention. Examples of such solvents include water, alcohols (such as ethanol, isopropanol, and butanol) and dimethyl sulfoxide. Solvates can be prepared by recrystallizing the compounds of the invention with a solvent or solvent mixture comprising a solvating solvent. Whether a solvate has been formed in any given case can be determined by analyzing the crystals of the compound using known standard techniques such as thermogravimetric analysis (TGE), differential scanning calorimetry (DSC), and X-ray crystallography.
溶剂化物可以是化学计量的或非化学计量的溶剂化物。特别优选的溶剂化物是水合物,且水合物的实例包括半水合物、一水合物和二水合物。The solvate may be a stoichiometric or non-stoichiometric solvate. A particularly preferred solvate is a hydrate, and examples of hydrates include hemihydrates, monohydrates, and dihydrates.
关于溶剂化物和用于制备和表征它们的方法的更详细的讨论,参见Bryn等人,Solid-State Chemistry of Drugs,第二版,出版于SSCI,Inc of West Lafayette,IN,USA,1999,ISBN 0-967-06710-3。For a more detailed discussion of solvates and methods for preparing and characterizing them, see Bryn et al., Solid-State Chemistry of Drugs, 2nd edition, published by SSCI, Inc of West Lafayette, IN, USA, 1999, ISBN 0-967-06710-3.
为简便起见,式I的化合物及这样的化合物的药学上可接受的盐和溶剂化物在下文中统称为“式I的化合物”。For simplicity, compounds of Formula I and pharmaceutically acceptable salts and solvates of such compounds are hereinafter collectively referred to as "compounds of Formula I".
式I的化合物可以包含双键,并因此关于每个单独的双键可以作为E(entgegen)和Z(zusammen)几何异构体存在。所有这些异构体及其混合物都包括在本发明的范围内。The compounds of Formula I may contain double bonds and may therefore exist as E (entgegen) and Z (zusammen) geometric isomers about each individual double bond. All such isomers and mixtures thereof are included within the scope of the present invention.
式I的化合物可以作为位置异构体存在,并且也可以表现出互变异构。所有互变异构形式及其混合物都包括在本发明的范围内。The compounds of formula I may exist as positional isomers and may also exhibit tautomerism. All tautomeric forms and mixtures thereof are included within the scope of the present invention.
式I的化合物可以包含一个或多个不对称碳原子,并因此可以表现出光学和/或非对映异构性。非对映体可以使用常规技术分离,例如色谱法或分级结晶法。各种立体异构体可以通过使用常规技术,例如分级结晶或HPLC分离化合物的外消旋或其他混合物来分离。替代地,所需的光学异构体可以通过以下制成:通过合适的光学活性起始材料在不会引起外消旋作用或差向异构化的条件下的反应(即“手性池”方法);通过合适的起始材料与随后可以在合适的阶段去除的“手性助剂”的反应;通过衍生化(即拆分,包括动态拆分),例如用同手性酸,然后通过常规手段诸如色谱法分离非对映体衍生物,或通过与合适的手性试剂或手性催化剂反应,所有这些都在技术人员已知的条件下进行。所有立体异构体及其混合物都包括在本发明的范围内。The compound of formula I may contain one or more asymmetric carbon atoms, and therefore may exhibit optical and/or diastereoisomerism. Diastereomers can be separated using conventional techniques, such as chromatography or fractional crystallization. Various stereoisomers can be separated by using conventional techniques, such as fractional crystallization or HPLC to separate the racemic or other mixtures of the compound. Alternatively, the desired optical isomer can be made by: by reaction of suitable optically active starting materials under conditions that do not cause racemization or epimerization (i.e., "chiral pool" method); by reaction of suitable starting materials with "chiral auxiliary agents" that can be removed at a suitable stage; by derivatization (i.e., splitting, including dynamic splitting), for example, with homochiral acids, and then by conventional means such as chromatography to separate diastereomeric derivatives, or by reacting with suitable chiral reagents or chiral catalysts, all of which are carried out under conditions known to the technician. All stereoisomers and mixtures thereof are included within the scope of the present invention.
为免生疑问,在本发明的上下文中,术语“治疗”包括对需要这种治疗的患者的治疗性或姑息性治疗,以及对易受相关疾病状态影响的患者的预防性治疗和/或诊断。For the avoidance of doubt, in the context of the present invention, the term "treatment" includes therapeutic or palliative treatment of a patient in need of such treatment, as well as prophylactic treatment and/or diagnosis of a patient susceptible to the relevant disease state.
术语“患者(patient)”和“患者(patients)”包括对哺乳动物(例如人类)患者的提及。如本文所用,术语“受试者”或“患者”是本领域所公认的,并且本文中可互换使用来指哺乳动物,包括狗、猫、大鼠、小鼠、猴、奶牛、马、山羊、绵羊、猪、骆驼以及最优选地人。在一些实施方式中,受试者是需要治疗的受试者或具有疾病或疾患的受试者。然而,在其他实施方式中,受试者可以是正常的受试者。该术语没有指示特定的年龄或性别。因此,旨在涵盖成人和新生儿受试者,无论男性还是女性。The terms "patient" and "patients" include references to mammalian (e.g., human) patients. As used herein, the terms "subject" or "patient" are recognized in the art and are used interchangeably herein to refer to mammals, including dogs, cats, rats, mice, monkeys, cows, horses, goats, sheep, pigs, camels, and most preferably humans. In some embodiments, the subject is a subject in need of treatment or a subject with a disease or illness. However, in other embodiments, the subject can be a normal subject. The term does not indicate a specific age or gender. Therefore, it is intended to cover adult and neonatal subjects, whether male or female.
术语“有效量”是指对治疗的患者具有治疗效果(例如足以治疗或预防疾病)的化合物的量。该效果可以是客观的(即通过某种测试或标记物可测量的)或主观的(即受试者给出效果的表示或感觉到效果)。The term "effective amount" refers to the amount of a compound that has a therapeutic effect on a treated patient (e.g., sufficient to treat or prevent a disease). The effect can be objective (i.e., measurable by some test or marker) or subjective (i.e., the subject gives an indication of the effect or feels the effect).
本文中使用的术语“卤素”包括指代氟、氯、溴和碘。As used herein, the term "halogen" includes reference to fluorine, chlorine, bromine and iodine.
除非另有说明,否则术语“烷基”是指非支链或支链、非环状或环状、饱和或不饱和(例如形成烯基或炔基)的烃基基团,其可以是取代的或未被取代的(例如具有一个或多个卤素原子)。当术语“烷基”是指无环基团时,其优选为C1-4烷基(诸如乙基、丙基(例如正丙基或异丙基)、丁基(例如支链或非支链丁基),或更优选甲基)。当术语“烷基”是环状基团(其可以是指定基团“环烷基”的情况)时,其优选为C3-4环烷基。Unless otherwise indicated, the term "alkyl" refers to a non-branched or branched, non-cyclic or cyclic, saturated or unsaturated (e.g., forming an alkenyl or alkynyl) hydrocarbon group, which may be substituted or unsubstituted (e.g., having one or more halogen atoms). When the term "alkyl" refers to an acyclic group, it is preferably a C 1-4 alkyl group (such as ethyl, propyl (e.g., n-propyl or isopropyl), butyl (e.g., branched or non-branched butyl), or more preferably methyl). When the term "alkyl" is a cyclic group (which may be the case with the designated group "cycloalkyl"), it is preferably a C 3-4 cycloalkyl group.
可以被提及的本发明的另外实施方式包括其中式I的化合物被同位素标记的那些。然而,可以提及的本发明的其他特定实施方式包括其中式I的化合物未被同位素标记的那些。Further embodiments of the invention that may be mentioned include those in which the compounds of formula I are isotopically labeled. However, other specific embodiments of the invention that may be mentioned include those in which the compounds of formula I are not isotopically labeled.
当本文使用术语“同位素标记的”时,包括提及式I的化合物,其中在该化合物中的一个或多个位置存在非天然同位素(或同位素的非天然分布)。本领域技术人员将理解本文中提及的“化合物中的一个或多个位置”是指式I化合物的一个或多个原子。因此,术语“同位素标记的”包括提及在化合物中一个或多个位置同位素富集的式I的化合物。When the term "isotopically labeled" is used herein, it includes reference to compounds of Formula I, wherein non-natural isotopes (or non-natural distributions of isotopes) are present at one or more positions in the compound. Those skilled in the art will understand that reference to "one or more positions in a compound" herein refers to one or more atoms of a compound of Formula I. Thus, the term "isotopically labeled" includes reference to compounds of Formula I that are isotopically enriched at one or more positions in the compound.
式I的化合物的同位素标记或富集可以用氢、碳、氮、氧、硫、氟、氯、溴和/或碘中任何一种的放射性或非放射性同位素。在这方面可能提及的特定同位素包括2H、3H、11C、13C、14C、13N、15N、15O、17O、18O、35S、18F、37CI、77Br、82Br和125l)。Isotopic labeling or enrichment of the compounds of formula I may be with a radioactive or non-radioactive isotope of any one of hydrogen, carbon, nitrogen, oxygen, sulfur, fluorine, chlorine, bromine and/or iodine. Specific isotopes that may be mentioned in this regard include 2 H, 3 H, 11 C, 13 C, 14 C, 13 N, 15 N, 15 O, 17 O, 18 O, 35 S, 18 F, 37 CI, 77 Br, 82 Br and 125 I ).
当式I的化合物用放射性或非放射性同位素标记或富集时,可以提及的式I的化合物包括其中化合物中至少一个原子显示同位素分布的那些化合物,其中所述原子的放射性或非放射性同位素以比该放射性或非放射性同位素的天然水平高至少10%(例如10%至5000%,特别是50%至1000%,以及更特别是100%至500%)的水平存在。When the compound of formula I is labeled or enriched with a radioactive or non-radioactive isotope, the compounds of formula I that may be mentioned include those compounds wherein at least one atom in the compound exhibits an isotopic distribution, wherein the radioactive or non-radioactive isotope of the atom is present at a level that is at least 10% (e.g. 10% to 5000%, in particular 50% to 1000%, and more particularly 100% to 500%) higher than the natural level of the radioactive or non-radioactive isotope.
以下实施方式同样涉及根据本发明的第一方面的用途、根据本发明的第二方面的用途的化合物和根据本发明的第三方面的治疗方法,并且可以以任何技术上合理的方式与所述方面组合。The following embodiments also relate to the use according to the first aspect of the invention, the compounds for use according to the second aspect of the invention and the method of treatment according to the third aspect of the invention and can be combined with said aspects in any technically reasonable manner.
因此,在本发明的实施方式中,式I的化合物或其盐或溶剂化物可以是其中:Therefore, in an embodiment of the present invention, the compound of formula I or a salt or solvate thereof may be one in which:
(a)R2表示H、未取代的或被羟基基团取代的C1-C4烷基;(a) R 2 represents H, unsubstituted or substituted C 1 -C 4 alkyl;
(b)R3可以表示H、CH3或CH2CH3;(b) R 3 may represent H, CH 3 or CH 2 CH 3 ;
(c)Ra可以是H并且R1可以是Br;(c) Ra may be H and R1 may be Br;
(d)X可以是N;(d) X may be N;
(e)Z可以是N;(e) Z may be N;
(f)Y可以是C-CH3。(f) Y may be C—CH 3 .
在本文可以提及的本发明的其他实施方式中,式I的化合物或其盐或溶剂化物可以选自下表:In other embodiments of the present invention that may be mentioned herein, the compound of formula I or its salt or solvate may be selected from the following table:
在本文可以提及的更特别的实施方式中,式I的化合物或其盐或溶剂化物可以选自下表:In more particular embodiments that may be mentioned herein, the compound of formula I or its salt or solvate may be selected from the following table:
在本文公开的方面和实施方式中,细菌感染可以以呼吸系统、皮肤或软组织疾患中的一种或多种形式呈现。例如,细菌感染可以是选自肺部感染、肌萎缩侧索硬化和支气管扩张的组中的一种或多种。In aspects and embodiments disclosed herein, the bacterial infection may present in the form of one or more of respiratory, skin or soft tissue disorders. For example, the bacterial infection may be one or more selected from the group consisting of lung infection, amyotrophic lateral sclerosis and bronchiectasis.
如上文限定的式I的化合物或其盐或溶剂化物可以与其他治疗剂或其盐或溶剂化物组合使用,以提供协同作用。因此,本发明的第四至第六方面分别涉及:The compound of formula I as defined above or its salt or solvate can be used in combination with other therapeutic agents or their salts or solvates to provide a synergistic effect. Therefore, the fourth to sixth aspects of the present invention respectively relate to:
(A)如上文限定的式I的化合物或其盐或溶剂化物,以及其他治疗剂或其盐或溶剂化物,在制备用于治疗由脓肿分枝杆菌引起的细菌感染的药物中的用途,其中,该式I的化合物与该其他治疗剂顺序、同时或合并给药;(A) Use of a compound of formula I as defined above, or a salt or solvate thereof, and another therapeutic agent, or a salt or solvate thereof, in the preparation of a medicament for treating a bacterial infection caused by Mycobacterium abscessus, wherein the compound of formula I and the other therapeutic agent are administered sequentially, simultaneously or in combination;
(B)如上文限定的式I的化合物或其盐或溶剂化物,用于治疗由脓肿分枝杆菌引起的细菌感染的用途,其中,该式I的化合物与其他治疗剂或其盐或溶剂化物顺序、同时或合并给药;和(B) use of a compound of formula I as defined above, or a salt or solvate thereof, for treating a bacterial infection caused by Mycobacterium abscessus, wherein the compound of formula I is administered sequentially, simultaneously or in combination with other therapeutic agents or salts or solvates thereof; and
(C)一种治疗由脓肿分枝杆菌引起的细菌感染的方法,该方法包括向需要这种治疗的患者给药药学上有效量的如上文限定的式I的化合物或其盐或溶剂化物,以及其他治疗剂或其盐或溶剂化物。(C) A method for treating a bacterial infection caused by Mycobacterium abscessus, which method comprises administering to a patient in need of such treatment a pharmaceutically effective amount of a compound of formula I as defined above, or a salt or solvate thereof, and another therapeutic agent, or a salt or solvate thereof.
当在本文中使用时,术语“其他治疗剂”包括指代一种或多种(例如一种)治疗剂(例如一种治疗剂),其已知可用于(例如已知有效)治疗由脓肿分枝杆菌引起的细菌感染。As used herein, the term "other therapeutic agent" includes reference to one or more (eg, one) therapeutic agents (eg, one therapeutic agent) known to be useful (eg, known to be effective) in treating bacterial infections caused by M. abscessus.
当在本文中使用时,术语“顺序、同时或合并给药”包括指代以下:As used herein, the term "sequential, simultaneous or combined administration" includes reference to the following:
给药单独的药物制剂(一种包含式I的化合物,以及一种或多种其他的包含一种或多种其他治疗剂);和administering separate pharmaceutical formulations (one comprising a compound of Formula I, and one or more others comprising one or more other therapeutic agents); and
给药包含式I的化合物和(一种或多种)其他治疗剂的单一药物制剂。A single pharmaceutical formulation comprising a compound of Formula I and the additional therapeutic agent(s) is administered.
在本发明的所述方面中,其他治疗剂可以选自由口服抗微生物剂、阿米卡星、cefocetin、克拉霉素、氯法齐明和亚胺培南组成的组中的一种或多种。例如,其他治疗剂可以是氯法齐明。In said aspect of the invention, the other therapeutic agent may be selected from one or more of the group consisting of oral antimicrobial agents, amikacin, cefocetin, clarithromycin, clofazimine and imipenem. For example, the other therapeutic agent may be clofazimine.
如将理解的,将提供如上文所述的式I的化合物或其盐或溶剂化物用作药物组合物。因此,在本发明的第七方面中,提供了药物组合物,其包括如上文限定的式I的化合物或其盐或溶剂化物与一种或多种药学上可接受的佐剂、稀释剂或载体的组合。As will be appreciated, a compound of formula I as described above, or a salt or solvate thereof, will be provided for use as a pharmaceutical composition. Thus, in a seventh aspect of the invention, a pharmaceutical composition is provided comprising a compound of formula I as defined above, or a salt or solvate thereof, in combination with one or more pharmaceutically acceptable adjuvants, diluents or carriers.
式I的化合物可以通过任何合适的途径给药,但特别地可以口服、静脉内、肌内、皮肤、皮下、经粘膜(例如舌下或口腔)、直肠、经皮、鼻、肺(例如气管或支气管)、局部、通过任何其他肠胃外途径给药,以在药学上可接受的剂型中包括该化合物的药物制剂的形式。可以提及的特定给药方式包括口服、静脉内、皮肤、皮下、鼻、肌内或腹腔给药。The compounds of formula I can be administered by any suitable route, but in particular can be administered orally, intravenously, intramuscularly, cutaneously, subcutaneously, transmucosally (e.g. sublingually or buccally), rectally, transdermally, nasally, pulmonary (e.g. tracheally or bronchially), topically, by any other parenteral route, in the form of a pharmaceutical preparation comprising the compound in a pharmaceutically acceptable dosage form. Specific modes of administration that may be mentioned include oral, intravenous, cutaneous, subcutaneous, nasal, intramuscular or intraperitoneal administration.
式I的化合物将通常作为与药学上可接受的佐剂、稀释剂或载体混合的药物制剂给药,其可在适当考虑预期给药途径和标准药物实践的情况下选择。这样的药学上可接受的载体可以对活性化合物具有化学惰性,并且在使用条件下可以没有有害的副作用或毒性。合适的药物制剂可以在例如Remington The Science and Practice of Pharmacy,19th ed.,Mack Printing Company,Easton,Pennsylvania(1995)中找到。对于肠胃外给药,可以使用肠胃外可接受的水性溶液,该水性溶液是无热原的并且具有必要的pH、等渗性和稳定性。合适的溶液将是本领域技术人员众所周知的,文献中描述了许多方法。药物递送方法的简要综述也可以在例如Langer,Science(1990)249,1527中找到。The compound of formula I will generally be administered as a pharmaceutical preparation mixed with a pharmaceutically acceptable adjuvant, diluent or carrier, which can be selected with due consideration of the intended route of administration and standard pharmaceutical practice. Such a pharmaceutically acceptable carrier can be chemically inert to the active compound and can have no harmful side effects or toxicity under the conditions of use. Suitable pharmaceutical preparations can be found in, for example, Remington The Science and Practice of Pharmacy, 19th ed., Mack Printing Company, Easton, Pennsylvania (1995). For parenteral administration, parenteral acceptable aqueous solutions can be used, which are pyrogen-free and have the necessary pH, isotonicity and stability. Suitable solutions will be well known to those skilled in the art, and many methods are described in the literature. A brief review of drug delivery methods can also be found in, for example, Langer, Science (1990) 249, 1527.
否则,合适制剂的制备可以由技术人员使用常规技术和/或根据标准和/或公认的药物实践常规地实现。Otherwise, the preparation of suitable formulations may be routinely accomplished by the skilled artisan using conventional techniques and/or in accordance with standard and/or accepted pharmaceutical practice.
根据本发明使用的任何药物制剂中式I的化合物的量将取决于各种因素,诸如待治疗的病症的严重程度、待治疗的特定患者以及所使用的(一种或多种)化合物。在任何情况下,制剂中式I的化合物的量可由技术人员常规确定。The amount of the compound of formula I in any pharmaceutical formulation used according to the present invention will depend on various factors, such as the severity of the condition to be treated, the specific patient to be treated, and the compound(s) used. In any case, the amount of the compound of formula I in the formulation can be routinely determined by a skilled person.
例如,固体口服组合物诸如片剂或胶囊可以包含1至99%(w/w)的活性成分;0至99%(w/w)的稀释剂或填料;0至20%(w/w)的崩解剂;0至5%(w/w)的润滑剂;0至5%(w/w)的助流剂;0至50%(w/w)的成粒剂或粘合剂;0至5%(w/w)的抗氧化剂;以及0至5%(w/w)的颜料。控释片剂可以另外包含0至90%(w/w)的控释聚合物。For example, a solid oral composition such as a tablet or capsule may contain 1 to 99% (w/w) of active ingredient; 0 to 99% (w/w) of diluent or filler; 0 to 20% (w/w) of disintegrant; 0 to 5% (w/w) of lubricant; 0 to 5% (w/w) of glidant; 0 to 50% (w/w) of granulating agent or binder; 0 to 5% (w/w) of antioxidant; and 0 to 5% (w/w) of pigment. A controlled release tablet may additionally contain 0 to 90% (w/w) of a controlled release polymer.
肠胃外制剂(诸如用于注射的溶液或悬浮液或用于输注的溶液)可以包含1至50%(w/w)的活性成分;和50%(w/w)至99%(w/w)的液体或半固体载体或负载体(例如溶剂,诸如水);以及0-20%(w/w)的一种或多种其他赋形剂,诸如缓冲剂、抗氧化剂、悬浮稳定剂、张力调节剂和防腐剂。Parenteral formulations (such as solutions or suspensions for injection or solutions for infusion) may contain 1 to 50% (w/w) of active ingredient; and 50% (w/w) to 99% (w/w) of a liquid or semisolid carrier or vehicle (e.g., a solvent such as water); and 0-20% (w/w) of one or more other excipients, such as buffers, antioxidants, suspension stabilizers, tonicity regulators and preservatives.
根据待治疗的疾患和患者以及给药途径,式I的化合物可以以不同的治疗有效剂量给药至有此需要的患者。Depending on the condition and patient to be treated and the route of administration, the compounds of formula I can be administered to a patient in need thereof at varying therapeutically effective doses.
然而,在本发明的上下文中给药至哺乳动物特别是人的剂量应该足以在合理的时间范围内在哺乳动物中产生治疗反应。本领域技术人员将认识到,确切剂量和组合物的选择以及最合适的递送方案也将受到以下的影响:特别是制剂的药理学特性,治疗中的病症的性质,和严重性和接受者的身体状况和精神敏度,以及特定化合物的效力,接受治疗的患者的年龄、病症、体重、性别和反应,以及疾病的阶段/严重程度。However, the dose administered to a mammal, particularly a human, in the context of the present invention should be sufficient to produce a therapeutic response in the mammal within a reasonable time frame. Those skilled in the art will recognize that the selection of the exact dose and composition and the most appropriate delivery regimen will also be influenced by, inter alia, the pharmacological properties of the formulation, the nature and severity of the condition being treated and the physical condition and mental acuity of the recipient, as well as the potency of the specific compound, the age, condition, weight, sex and response of the patient being treated, and the stage/severity of the disease.
给药可以是连续的或间歇的(例如通过弹丸注射)。剂量也可以通过给药的时机和频率来确定。在口服或肠胃外给药的情况下,式I的化合物的剂量可以在每天约0.01mg至约1000mg之间变化。Administration can be continuous or intermittent (e.g., by bolus injection). Dosage can also be determined by the timing and frequency of administration. In the case of oral or parenteral administration, the dosage of the compound of Formula I can vary between about 0.01 mg to about 1000 mg per day.
在任何情况下,执业医师或其他技术人员将能够常规地确定最适合个体患者的实际剂量。以上提到的剂量是平均情况的示例;当然,存在其中需要更高或更低的剂量范围的个别情况,并且这样的在本发明的范围内。In any case, a practicing physician or other technician will be able to routinely determine the actual dosage that is most suitable for an individual patient. The dosages mentioned above are examples of average cases; of course, there are individual cases where a higher or lower dosage range is required, and such is within the scope of the present invention.
如上所述,式I的化合物或其盐或溶剂化物可以与进一步的治疗剂组合。因此,在本发明的第八方面,提供了药物组合物,其包括如上文限定的式I的化合物或其盐或溶剂化物,以及其他治疗剂或其盐或溶剂化物,其中,该其他治疗剂选自由口服抗微生物剂、阿米卡星、cefocetin、克拉霉素、氯法齐明和亚胺培南组成的组中的一种或多种,任选地其中,该其他治疗剂是氯法齐明。As described above, the compound of formula I or its salt or solvate can be combined with a further therapeutic agent. Therefore, in an eighth aspect of the present invention, a pharmaceutical composition is provided, which comprises a compound of formula I as defined above or its salt or solvate, and other therapeutic agents or their salts or solvates, wherein the other therapeutic agent is selected from one or more of the group consisting of oral antimicrobial agents, amikacin, cefocetin, clarithromycin, clofazimine and imipenem, optionally wherein the other therapeutic agent is clofazimine.
上述组合产品提供了组分(A)与组分(B)联合给药,并因此,可以呈现为单独的制剂,其中,这些制剂中的至少一种包括组分(A)并且至少一种包括组分(B),或可以呈现(即配制)为组合制剂(即呈现为包括组分(A)和组分(B)的单一制剂)。The above-mentioned combination products provide for the combined administration of component (A) and component (B), and therefore, can be presented as separate preparations, wherein at least one of these preparations includes component (A) and at least one includes component (B), or can be presented (i.e. formulated) as a combined preparation (i.e. presented as a single preparation including component (A) and component (B)).
因此,进一步提供了:Therefore, it is further provided that:
(I)药物制剂,其包括如上文限定的式I的化合物和其他治疗剂,与药学上可接受的佐剂、稀释剂或载体混合(该制剂在下文中称为“组合制剂”);和(I) a pharmaceutical preparation comprising a compound of formula I as defined above and another therapeutic agent, mixed with a pharmaceutically acceptable adjuvant, diluent or carrier (such preparation is hereinafter referred to as a "combination preparation"); and
(II)部件试剂盒,其包括以下组分:(II) a kit of parts comprising the following components:
(i)包括与药学上可接受的佐剂、稀释剂或载体混合的如上文限定的式I的化合物的药物制剂;和(i) a pharmaceutical formulation comprising a compound of formula I as defined above in admixture with a pharmaceutically acceptable adjuvant, diluent or carrier; and
(ii)包括与药学上可接受的佐剂、稀释剂或载体混合的其他治疗剂的药物制剂,(ii) pharmaceutical preparations comprising other therapeutic agents in admixture with a pharmaceutically acceptable adjuvant, diluent or carrier,
该组分(i)和(ii)各自以适于与其他组分联合给药的形式提供。The components (i) and (ii) are each provided in a form suitable for administration in combination with the other components.
因此,部件试剂盒的组分(i)是与药学上可接受的佐剂、稀释剂或载体混合的组分(A)。类似地,组分(ii)是与药学上可接受的佐剂、稀释剂或载体混合的组分(B)。Thus, component (i) of the kit of parts is component (A) mixed with a pharmaceutically acceptable adjuvant, diluent or carrier. Similarly, component (ii) is component (B) mixed with a pharmaceutically acceptable adjuvant, diluent or carrier.
应当理解,以上讨论的组合产品可以根据本发明第七方面的讨论进行配制。It will be appreciated that the combination products discussed above may be formulated as discussed above with respect to the seventh aspect of the invention.
本文所述的本发明的各方面(例如上述化合物、组合、方法和用途)可以具有的优点在于,在本文所述病况的治疗中,它们对于医生和/或患者而言可能更方便,比现有技术中已知的用于治疗这些病况或其他的类似化合物、组合、方法(治疗)或用途更有效、毒性更低、选择性更好、活性范围更广、效力更强、产生的副作用更少或可能具有其他有用的药理学特性。The various aspects of the invention described herein (e.g., the above-described compounds, combinations, methods and uses) may have the advantage that they may be more convenient for physicians and/or patients in the treatment of the conditions described herein, more effective, less toxic, more selective, have a broader spectrum of activity, be more potent, produce fewer side effects, or may have other useful pharmacological properties than similar compounds, combinations, methods (treatments) or uses known in the prior art for the treatment of these conditions or others.
现将参考以下非限制性实例来讨论本发明的其他方面和实施方式。Further aspects and embodiments of the invention will now be discussed with reference to the following non-limiting examples.
实施例Example
材料Material
DNase I和MgCl2购自Thermo Fischer,USA。Middlebrook 7H9培养基、CAMH肉汤和Middlebrook白蛋白-右旋糖-过氧化氢酶(ADC)购自BD Difco。甘油购自FisherScientific。吐温80购自Sigma-Aldrich。不含EDTA的蛋白酶抑制剂混合物购自Roche-USA。CellTiter-glow和Bac titer glo购自promega。3-(N-吗啉基)丙烷磺酸(MOPS)、ADP、NADH、溶菌酶、KH2PO4、氯法齐明和阿米卡星购自Sigma-Aldrich。BCA试剂盒购自Pierce。DNase I and MgCl 2 were purchased from Thermo Fischer, USA. Middlebrook 7H9 medium, CAMH broth and Middlebrook albumin-dextrose-catalase (ADC) were purchased from BD Difco. Glycerol was purchased from Fisher Scientific. Tween 80 was purchased from Sigma-Aldrich. EDTA-free protease inhibitor cocktail was purchased from Roche-USA. CellTiter-glow and Bac titer glo were purchased from promega. 3-(N-morpholino)propane sulfonic acid (MOPS), ADP, NADH, lysozyme, KH 2 PO 4 , clofazimine and amikacin were purchased from Sigma-Aldrich. BCA kit was purchased from Pierce.
使用脓肿分枝杆菌脓肿亚种ATCC 19977、脓肿分枝杆菌博莱亚种、脓肿分枝杆菌马赛亚种菌株以及来自患有肌萎缩侧索硬化和支气管扩张的患者的临床分离株脓肿分枝杆菌Bamboo。后者属于脓肿分枝杆菌脓肿亚种并携带无活性的克拉霉素敏感的erm(41)C28sequevar(GenBank登录号MVDX00000000)(Yee,M.et al.,Genome Announc.2017,5,e00388-17)。Mycobacterium abscessus subsp. abscessus ATCC 19977, Mycobacterium abscessus subsp. boleyi, Mycobacterium abscessus subsp. massei strains and a clinical isolate of Mycobacterium abscessus Bamboo from a patient with amyotrophic lateral sclerosis and bronchiectasis were used. The latter belongs to Mycobacterium abscessus subsp. abscessus and carries the inactive clarithromycin-sensitive erm(41)C28sequevar (GenBank accession number MVDX00000000) (Yee, M. et al., Genome Announc. 2017, 5, e00388-17).
用于培养Mab菌株的一般程序General procedure for culturing Mab strains
将所有Mab菌株维持在补充有0.2%(vol/vol)甘油、0.05%(vol/vol)吐温80和10%(vol/vol)Middlebrook ADC的Middlebrook 7H9培养基中。CAMH肉汤用于培养Mab菌株,并根据生产商的说明进行制备。All Mab strains were maintained in Middlebrook 7H9 medium supplemented with 0.2% (vol/vol) glycerol, 0.05% (vol/vol) Tween 80, and 10% (vol/vol) Middlebrook ADC. CAMH broth was used to grow the Mab strains and was prepared according to the manufacturer's instructions.
实施例1.GaMF1抗TB化合物的再利用方法Example 1. Recycling method of GaMF1 anti-TB compound
分枝杆菌F1F0-ATP合酶由其质子易位F0区(a:c9)组成,其通过中心旋转γ.ε和外周柄亚基b:b′:δ连接至催化α3:β3区,在该区形成ATP(Kamariah,N.et al.,J.Struct.Biol.2019,207,199-208;Kamariah,N,et al.,Prog.Biophys.Mol.Biol.2020,152,64-73;和Guo,H.et al.,Nature 2021,589,143-147)。与非分枝杆菌F1F0-ATP合酶相比,分枝杆菌F-ATP合酶亚基α、δ和γ分别包含C-末端延伸(Ragunathan,P.et al.,J.Biol.Chem.2017,292,11262-11279)、插入结构域(Kamariah,N.et al.,J.Struct.Biol.2019,207,199-208)或12至14个氨基酸的额外环(Hotra,A.et al.,FEBSJ.2016,283,1947-1961)。这些附加物对于调节(Kamariah,N,et al.,Prog.Biophys.Mol.Biol.2020,152,64-73;Guo,H.et al.,Nature 2021,589,143-147;Ragunathan,P.et al.,J.Biol.Chem.2017,292,11262-11279;和Wong,C.-F.&Grüber,G.,Antimicrob.Agents Chemother.2020,64,e01568-20)或ATP合成(Ragunathan,P.et al.,J.Biol.Chem.2017,292,11262-11279;Hotra,A.et al.,FEBS J.2016,283,1947-1961;和Harikishore,A.et al.,Antibiotics 2021,10,1456)是至关重要的。例如,亚基γ的分枝杆菌额外环提供了故障保护装置(Montgomerya,M.G.et al.,Proc.Natl.Acad.Sci.U.S.A2021,118,e2111899118),通过该装置,当亚基g接近亚基b′时,其天冬氨酸残基之一在旋转过程中与外周柄亚基b′的精氨酸残基形成盐桥(Montgomerya,M.G.et al.,Proc.Natl.Acad.Sci.U.S.A 2021,118,e2111899118)。亚基α和γ的这些新分枝杆菌特征是特异性和新抑制剂的靶标(Harikishore,A.et al.,Antibiotics 2021,10,1456;和Hotra,A.et al.,Angew.Chem.Int.Ed.Engl.2020,59,13295-13304)。GaMF1是一种靶向结核分枝杆菌(M.tuberculosis)γ亚基的额外环的杀菌抗TB化合物,代表了这种新型分枝杆菌F-ATP合酶抑制剂,其在小鼠肝微粒体中具有4.37的clogP和良好的代谢稳定性,并且不抑制革兰氏阳性和革兰氏阴性细菌如金黄色葡萄球菌(Staphylococcus aureus)和大肠杆菌(Escherichia coli)的生长(Hotra,A.et al.,Angew.Chem.Int.Ed.Engl.2020,59,13295-13304)。 Mycobacterial F1F0 -ATP synthase consists of its proton translocation F0 region (a: c9 ), which is connected to the catalytic α3 : β3 region via a central rotation γ.ε and a peripheral stalk subunit b:b′:δ, where ATP is formed (Kamariah, N. et al., J. Struct. Biol. 2019, 207, 199-208; Kamariah, N, et al., Prog. Biophys. Mol. Biol. 2020, 152, 64-73; and Guo, H. et al., Nature 2021, 589, 143-147). Compared to non- mycobacterial F1F0 -ATP synthase, mycobacterial F-ATP synthase subunits α, δ, and γ contain a C-terminal extension (Ragunathan, P. et al., J. Biol. Chem. 2017, 292, 11262-11279), an insertion domain (Kamariah, N. et al., J. Struct. Biol. 2019, 207, 199-208), or an additional loop of 12 to 14 amino acids (Hotra, A. et al., FEBS J. 2016, 283, 1947-1961), respectively. These appendages are important for regulation (Kamariah, N, et al., Prog. Biophys. Mol. Biol. 2020, 152, 64-73; Guo, H. et al., Nature 2021, 589, 143-147; Ragunathan, P. et al., J. Biol. Chem. 2017, 292, 11262-11279; and Wong, C.-F. & Grüber, G., Antimicrob. Agents Chemother. 2020, 64, e01568-20) or ATP synthesis (Ragunathan, P. et al., J. Biol. Chem. 2017, 292, 11262-11279; Hotra, A. et al., FEBS J. 2016, 283, 1947-1961; and Harikishore, A. et al., Nature 2016, 589, 143-147). al., Antibiotics 2021, 10, 1456). For example, the mycobacterial extra loop of subunit γ provides a failsafe device (Montgomerya, M. Get al., Proc. Natl. Acad. Sci. USA 2021, 118, e2111899118), by which one of its aspartate residues forms a salt bridge with an arginine residue of the peripheral handle subunit b' during rotation when subunit g approaches subunit b' (Montgomerya, M. Get al., Proc. Natl. Acad. Sci. USA 2021, 118, e2111899118). These new mycobacterial features of subunits α and γ are targets for specificity and new inhibitors (Harikishore, A. et al., Antibiotics 2021, 10, 1456; and Hotra, A. et al., Angew. Chem. Int. Ed. Engl. 2020, 59, 13295-13304). GaMF1 is a bactericidal anti-TB compound that targets an extra ring of the γ subunit of Mycobacterium tuberculosis (M. tuberculosis), representing this new type of mycobacterial F-ATP synthase inhibitor, which has a clogP of 4.37 and good metabolic stability in mouse liver microsomes, and does not inhibit the growth of Gram-positive and Gram-negative bacteria such as Staphylococcus aureus and Escherichia coli (Hotra, A. et al., Angew. Chem. Int. Ed. Engl. 2020, 59, 13295-13304).
再利用方法用于GaMF1抗TB化合物(图1A),并且使用模式菌株脓肿分枝杆菌脓肿亚种ATCC 19977作为试验菌研究了Mab(脓肿分枝杆菌脓肿亚种)在完全Middlebrook 7H9肉汤中对化合物的敏感性,以及脓肿分枝杆菌在阳离子调节的Mueller-Hinton(CAMH)培养基中(Pang,H.et al.,Int.J.Clin.Exp.Med.2015,8,15423-15431;和Low,J.L.et al.,Front.Microbiol.2017,8,1539)和在完全Middlebrook 7H9肉汤中(Broda,A.et al.,J.Clin.Microbiol.2013,51,217-223)对化合物的敏感性。根据文献(Hotra,A.et al.,Angew.Chem.Int.Ed.Engl.2020,59,13295-13304)合成GaMF1。The reuse method was used for GaMF1 anti-TB compound (Figure 1A), and the sensitivity of Mab (Mycobacterium abscessus subsp. abscessus) to the compound in complete Middlebrook 7H9 broth was studied using the model strain Mycobacterium abscessus subsp. abscessus ATCC 19977 as the test bacteria, as well as the sensitivity of Mycobacterium abscessus to the compound in cation-adjusted Mueller-Hinton (CAMH) medium (Pang, H. et al., Int. J. Clin. Exp. Med. 2015, 8, 15423-15431; and Low, J. L. et al., Front. Microbiol. 2017, 8, 1539) and in complete Middlebrook 7H9 broth (Broda, A. et al., J. Clin. Microbiol. 2013, 51, 217-223). GaMF1 was synthesized according to the literature (Hotra, A. et al., Angew. Chem. Int. Ed. Engl. 2020, 59, 13295-13304).
最低抑制浓度(MIC)的测定Determination of minimum inhibitory concentration (MIC)
使用肉汤微量稀释法进行生长抑制剂量-效应测定,如前所述(Moreira,W.,Aziz,D.B.&Dick,T.,Front.Microbiol.2016,7,199)。报告的MIC50表示与未处理的培养物相比抑制50%生长的浓度。Growth inhibition dose-effect assays were performed using broth microdilution as described previously (Moreira, W., Aziz, DB & Dick, T., Front. Microbiol. 2016, 7, 199). The reported MIC 50 represents the concentration that inhibits 50% growth compared to untreated cultures.
结果与讨论Results and discussion
GaMF1显示出如下效力,抑制50%脓肿分枝杆菌生长所需的MIC(MIC50)为13±2.1μM(图1B)和33±4.7μM(图2A),这甚至优于一线药物cefocetin(43μM)、阿米卡星(44μM)和阿米卡星(360μM)的MIC50值(Sarathy,J.P.et al.,Antimicrob.Agents Chemother.2020,64,e02404)。GaMF1还抑制另外两个亚种脓肿分枝杆菌博莱亚种(以36.2μM)和脓肿分枝杆菌马赛亚种(以35.8μM)的50%生长(图2A)。这些值还与在结核分枝杆菌(33μM)和牛分枝杆菌(M.Bovis)Calmette-Guérin(BCG,17μM,Hotra,A.et al.,Angew.Chem.Int.Ed.Engl.2020,59,13295-13304)中对于GaMF1确定的值相当,并且在临床使用的抗脓肿分枝杆菌药物头孢西丁(38μM,Ferro,B.E.et al.,Antimicrob.Agents Chemother.2016,60,6374-6376)、阿米卡星(55μM,Ferro,B.E.et al.,Antimicrob.Agents Chemother.2016,60,6374-6376)和亚胺培南(14μM,Brown-Elliott,B.A.et al.,J.Clin.Microbiol.2016,54,1586-1592)的范围内。虽然F-ATP合酶抑制剂贝达喹啉(BDQ)和TBAJ876针对结核分枝杆菌显示出比针对脓肿分枝杆菌100×更高的效力(Sarathy,J.P.et al.,Antimicrob.AgentsChemother.2020,64,e02404-19),但GaMF1在细胞生长抑制和杀死广谱分枝杆菌方面保持相似效力。GaMF1 showed the following efficacy, with the MIC required to inhibit 50% growth of Mycobacterium abscessus (MIC 50 ) being 13±2.1 μM (Figure 1B) and 33±4.7 μM (Figure 2A), which is even better than the MIC 50 values of first-line drugs cefocetin (43 μM), amikacin (44 μM) and amikacin (360 μM) (Sarathy, JP et al., Antimicrob. Agents Chemother. 2020, 64, e02404). GaMF1 also inhibited 50 % growth of two other subspecies, Mycobacterium abscessus subspecies Bole (at 36.2 μM) and Mycobacterium abscessus subspecies Massimo (at 35.8 μM) (Figure 2A). These values are also comparable to those determined for GaMF1 in Mycobacterium tuberculosis (33 μM) and Mycobacterium bovis (M. Bovis) Calmette-Guérin (BCG, 17 μM, Hotra, A. et al., Angew. Chem. Int. Ed. Engl. 2020, 59, 13295-13304), and to the clinically used anti-Mycobacterium abscessus drugs cefoxitin (38 μM, Ferro, BE et al., Antimicrob. Agents Chemother. 2016, 60, 6374-6376), amikacin (55 μM, Ferro, BE et al., Antimicrob. Agents Chemother. 2016, 60, 6374-6376), and imipenem (14 μM, Brown-Elliott, BA et al., Antimicrob. Agents Chemother. 2016, 60, 6374-6376). al., J. Clin. Microbiol. 2016, 54, 1586-1592). Although the F-ATP synthase inhibitors bedaquiline (BDQ) and TBAJ876 showed 100× higher potency against Mycobacterium tuberculosis than against Mycobacterium abscessus (Sarathy, JP et al., Antimicrob. Agents Chemother. 2020, 64, e02404-19), GaMF1 maintained similar potency in cell growth inhibition and killing of a broad spectrum of mycobacteria.
实施例2.GaMF1敏感性Example 2. GaMF1 sensitivity
我们确定是否保留了对临床分离株脓肿分枝杆菌脓肿亚种Bamboo的GaMF1敏感性(Yee,M.et al.,Genome Announc.2017,5,e00388-17)。按照实施例1中的方案确定MIC50。We determined whether GaMF1 sensitivity was retained against the clinical isolate Mycobacterium abscessus subsp. Bamboo (Yee, M. et al., Genome Announc. 2017, 5, e00388-17). MIC 50 was determined according to the protocol in Example 1.
结果与讨论Results and discussion
在CAMH培养基和Middlebrook 7H9肉汤中确定的MIC50分别为10±1.9μM(图1C)和33±3.2μM(图2B),与对于脓肿分枝杆菌模式菌株脓肿分枝杆菌脓肿亚种ATCC 19977测定的值相似。The MIC 50 determined in CAMH medium and Middlebrook 7H9 broth were 10 ± 1.9 μM ( FIG. 1C ) and 33 ± 3.2 μM ( FIG. 2B ), respectively, which are similar to the values determined for the type strain of M. abscessus, M. abscessus subsp. abscessus ATCC 19977.
实施例3.GaMF1的杀菌活性Example 3. Bactericidal activity of GaMF1
为了确定GaMF1是否对脓肿分枝杆菌具有杀菌作用,我们测量了该类型菌株在药物暴露后的存活率。按照实施例1中的方案确定MIC50。To determine whether GaMF1 has a bactericidal effect on M. abscessus, we measured the survival of this strain after drug exposure. The MIC50 was determined according to the protocol in Example 1.
结果与讨论Results and discussion
GaMF1在CAMH培养基(图1D)和7H9(图2C)两者中以其MIC50的10倍对脓肿分枝杆菌具有杀菌作用。GaMF1 was bactericidal against M. abscessus at 10 times its MIC50 in both CAMH medium (Fig. ID) and 7H9 (Fig. 2C).
实施例4.GaMF1抑制分枝杆菌F-ATP合酶的能力Example 4. Ability of GaMF1 to inhibit mycobacterial F-ATP synthase
使用细胞内ATP合成测定(Lechartier,B.&Cole,S.T.,Antimicrob.AgentsChemother.2015,59,4457-4463)和脓肿分枝杆菌的IMV(Hotra,A.et al.,Angew.Chem.Int.Ed.Engl.2020,59,13295-13304)评价GaMF1抑制分枝杆菌F-ATP合酶的能力,脓肿分枝杆菌的IMV根据Hotra等人(Hotra,A.et al.,Angew.Chem.Int.Ed.Engl.2020,59,13295-13304)制备。The ability of GaMF1 to inhibit mycobacterial F-ATP synthase was evaluated using an intracellular ATP synthesis assay (Lechartier, B. & Cole, S.T., Antimicrob. Agents Chemother. 2015, 59, 4457-4463) and IMVs of Mycobacterium abscessus (Hotra, A. et al., Angew. Chem. Int. Ed. Engl. 2020, 59, 13295-13304). IMVs of Mycobacterium abscessus were prepared according to Hotra et al. (Hotra, A. et al., Angew. Chem. Int. Ed. Engl. 2020, 59, 13295-13304).
Mab反膜囊泡的制备Preparation of Mab reverse membrane vesicles
为了纯化用于ATP合成测定的Mab的IMV,细胞在补充有10%Middlebrook白蛋白-右旋糖-过氧化氢酶(ADC)、0.5%甘油和0.05%吐温80的7H9中在37℃下生长过夜,直至它们达到0.4的OD600值。将培养物在200ml补充的7H9中扩增,并在滚瓶中(2rpm)生长直至OD600=0.4。该培养物用于接种在滚瓶中生长过夜直至OD600=0.4的5l培养物。将约5g(湿重)的Mab重悬于包含无EDTA的蛋白酶抑制剂混合物(20ml缓冲液中1片)和1.2mg/ml溶菌酶的20ml膜制备缓冲液(50mM MOPS,2mM MgCl2,pH 7.5)中。将悬浮液在室温下搅拌45min,并另外补充300μl 1M MgCl2和50μl DNase I,并在室温下继续搅拌另外15min。所有后续步骤均在冰上进行。通过在18,000psi下三次通过冰预冷的M-110L型号微射流处理器(M-110L)将细胞破碎。将包含裂解细胞的悬浮液在4℃下以4,200x g离心20min。将包含膜级分的上清液进一步在4℃下以45,000x g进行超速离心1h。弃去上清液,并将沉淀的膜级分重悬于包含15%甘油的膜制备缓冲液中,等分分装,快速冷冻并在-80℃下储存。通过BCA法(Smith,P.K et al.,Anal Biochem.1985,150,76-85)确定囊泡中蛋白质的浓度。To purify IMVs of Mabs for ATP synthesis assays, cells were grown overnight at 37°C in 7H9 supplemented with 10% Middlebrook albumin-dextrose-catalase (ADC), 0.5% glycerol and 0.05% Tween 80 until they reached an OD 600 value of 0.4. The culture was expanded in 200 ml of supplemented 7H9 and grown in roller bottles (2 rpm) until OD 600 = 0.4. This culture was used to inoculate a 5 l culture grown overnight in roller bottles until OD 600 = 0.4. Approximately 5 g (wet weight) of Mabs were resuspended in 20 ml of membrane preparation buffer (50 mM MOPS, 2 mM MgCl 2 , pH 7.5) containing EDTA-free protease inhibitor cocktail (1 tablet in 20 ml buffer) and 1.2 mg/ml lysozyme. The suspension was stirred at room temperature for 45 min, and 300 μl 1M MgCl 2 and 50 μl DNase I were additionally supplemented, and stirring was continued for another 15 min at room temperature. All subsequent steps were performed on ice. The cells were broken by passing through an ice-precooled M-110L model microfluidizer (M-110L) three times at 18,000 psi. The suspension containing the lysed cells was centrifuged at 4,200 x g for 20 min at 4 ° C. The supernatant containing the membrane fraction was further ultracentrifuged at 45,000 x g for 1 h at 4 ° C. The supernatant was discarded, and the precipitated membrane fraction was resuspended in a membrane preparation buffer containing 15% glycerol, aliquoted, quickly frozen and stored at -80 ° C. The concentration of protein in the vesicle was determined by the BCA method (Smith, PK et al., Anal Biochem. 1985, 150, 76-85).
IMV的ATP合成测定ATP synthesis assay of IMVs
在平底白色微量滴定96孔板(Corning USA)中测量ATP合成。在包含10μM ADP、250μM Pi和1mM NADH的测定缓冲液(50mM MOPS,pH7.5,10mM MgCl2)中制备反应混合物。通过添加溶解在测定缓冲液中的100mM KH2PO4盐来调节Pi的浓度。通过将Mab的反囊泡添加至5μg/ml的终蛋白质浓度来开始ATP合成。在添加50μl的CellTiter发光试剂之前将反应混合物在室温下孵育30min,并将混合物在室温下避光再孵育10min。发射的发光与合成的ATP相关,通过Tecan酶标仪Infinite 200Pro(Tecan USA)测量,使用以下参数:发光、500ms的积分时间和无衰减。ATP synthesis was measured in a flat-bottom white microtiter 96-well plate (Corning USA). The reaction mixture was prepared in an assay buffer (50 mM MOPS, pH 7.5, 10 mM MgCl 2 ) containing 10 μM ADP, 250 μM Pi and 1 mM NADH. The concentration of Pi was adjusted by adding 100 mM KH 2 PO 4 salt dissolved in the assay buffer. ATP synthesis was started by adding the reverse vesicles of Mab to a final protein concentration of 5 μg/ml. The reaction mixture was incubated at room temperature for 30 min before adding 50 μl of CellTiter luminescent reagent, and the mixture was incubated at room temperature for another 10 min in the dark. The emitted luminescence was related to the synthesized ATP and was measured by a Tecan microplate reader Infinite 200 Pro (Tecan USA) using the following parameters: luminescence, an integration time of 500 ms and no decay.
全细胞ATP测量Whole-cell ATP measurement
如前所述(Hotra,A.et al.,Angew.Chem.Int.Ed.Engl.2020,59,13295)在96孔板中进行全细胞ATP合成测定。Whole-cell ATP synthesis assays were performed in 96-well plates as previously described (Hotra, A. et al., Angew. Chem. Int. Ed. Engl. 2020, 59, 13295).
半最大抑制浓度(IC50)Half maximal inhibitory concentration (IC 50 )
将100μl的完全7H9培养基装于透明96孔平底Costar细胞培养板(Corning)的每个孔中。将GaMF1添加至每行中的第一个孔中以产生两倍于期望最高终浓度。随后,从每行的第一个孔开始进行16点2倍连续稀释。将生长至中指数期的脓肿分枝杆菌脓肿亚种稀释至600nm处的光密度(OD600)为0.1;将100μl稀释培养物添加至每个孔中,以在所有孔中产生0.05的最终OD600。将板在37℃下孵育6-8h。100 μl of complete 7H9 medium was placed in each well of a clear 96-well flat-bottom Costar cell culture plate (Corning). GaMF1 was added to the first well in each row to produce twice the desired highest final concentration. Subsequently, a 16-point 2-fold serial dilution was performed starting from the first well in each row. Mycobacterium abscessus subsp. abscessus grown to mid-exponential phase was diluted to an optical density (OD 600 ) of 0.1 at 600 nm; 100 μl of the diluted culture was added to each well to produce a final OD 600 of 0.05 in all wells. The plate was incubated at 37°C for 6-8h.
在孵育期结束时,通过添加BacTiter-Glo微生物细胞生存力测定(Promega)测量样本的细胞内ATP含量,该测定根据生产商的说明进行,如前所述(Wu,M.-L.,Gengenbacher,M.&Dick,T.,Front Microbiol.2016,7,947)。将50μl的细菌样本与50μl的BacTiter-Glo试剂在不透明的白色96孔平底Nunc板的每个孔中混合。在室温下将板避光孵育10min后,用Tecan Infinite Pro 200酶标仪测量发光。从所有样本的发光读数中减去背景发光读数。ATP含量的量与相对发光单位成正比。使用GraphPad Prism 8软件制作结果图。IC50对应于与无药物条件相比发光值下降50%。At the end of the incubation period, the intracellular ATP content of the sample was measured by adding the BacTiter-Glo microbial cell viability assay (Promega), which was performed according to the manufacturer's instructions as described previously (Wu, M.-L., Gengenbacher, M. & Dick, T., Front Microbiol. 2016, 7, 947). 50 μl of bacterial sample was mixed with 50 μl of BacTiter-Glo reagent in each well of an opaque white 96-well flat-bottom Nunc plate. After the plate was incubated in the dark for 10 min at room temperature, luminescence was measured with a Tecan Infinite Pro 200 microplate reader. The background luminescence reading was subtracted from the luminescence reading of all samples. The amount of ATP content is proportional to the relative luminescence unit. The result graph was prepared using GraphPad Prism 8 software. IC 50 corresponds to a 50% decrease in luminescence value compared to drug-free conditions.
结果与讨论Results and discussion
如图3A所示,化合物GaMF1以10±0.9μM的IC50耗竭细胞内的ATP合成,并以13±2.5μM的IC50耗竭脓肿分枝杆菌IMV的NADH驱动的ATP合成(图3B),表明病原体的生长抑制是由F-ATP合酶的抑制引起的。As shown in Figure 3A, compound GaMF1 depleted intracellular ATP synthesis with an IC50 of 10 ± 0.9 μM and depleted NADH-driven ATP synthesis of M. abscessus IMV with an IC50 of 13 ± 2.5 μM (Figure 3B), indicating that the growth inhibition of the pathogen was caused by the inhibition of F-ATP synthase.
表1.GaMF1及其对细胞生长(MIC50)和ATP合成(IC50)的影响。Table 1. GaMF1 and its effects on cell growth (MIC 50 ) and ATP synthesis (IC 50 ).
实施例5.与CFZ组合的GaMF1的生长抑制活性Example 5. Growth inhibitory activity of GaMF1 in combination with CFZ
由于脓肿分枝杆菌感染的治疗需要药物组合,我们测量了与CFZ组合的GaMF1的生长抑制活性,CFZ被提出与分枝杆菌特异性电子受体甲基萘醌竞争NDH-2复合物对其的还原(Lechartier,B.&Cole,S.T.,Antimicrob.Agents Chemother.2015,59,4457-4463)。CFZ最近被证明对脓肿分枝杆菌有活性,并被临床用作再利用的药物。按照实施例1中的方案确定MIC50。Since the treatment of M. abscessus infection requires a drug combination, we measured the growth inhibitory activity of GaMF1 in combination with CFZ, which is proposed to compete with the mycobacterium-specific electron acceptor menaquinone for its reduction by the NDH-2 complex (Lechartier, B. & Cole, ST, Antimicrob. Agents Chemother. 2015, 59, 4457-4463). CFZ has recently been shown to be active against M. abscessus and is used clinically as a repurposing drug. The MIC 50 was determined according to the protocol in Example 1.
结果与讨论Results and discussion
如图4所示,3.4μM CFZ或6.8μM(CFZ的MIC50,Ferro,B.E.et al.,Antimicrob.Agents Chemother.2016,60,1097-1105)与GaMF1的组合增加在7H9培养基中脓肿分枝杆菌细胞抑制的效力(图4A)。当GaMF1与脓肿分枝杆菌的RNA聚合酶抑制剂利福布汀(MIC为1至4μM)(图4B)或抗脓肿分枝杆菌抗生素阿米卡星(5μM,图4C)组合时,观察到细胞生长急剧减少。As shown in Figure 4, the combination of 3.4 μM CFZ or 6.8 μM (MIC 50 of CFZ, Ferro, BE et al., Antimicrob. Agents Chemother. 2016, 60, 1097-1105) with GaMF1 increased the efficacy of inhibition of M. abscessus cells in 7H9 culture medium (Figure 4A). When GaMF1 was combined with rifabutin, an RNA polymerase inhibitor of M. abscessus (MIC of 1 to 4 μM) (Figure 4B) or amikacin, an antibiotic against M. abscessus (5 μM, Figure 4C), a sharp decrease in cell growth was observed.
实施例6.GaMF1和利福布汀杀伤效力Example 6. GaMF1 and rifabutin killing efficacy
GaMF1和利福布汀杀伤效力研究Study on the killing efficacy of GaMF1 and rifabutin
脓肿分枝杆菌培养物生长至指数期,并稀释至0.005的OD600,并分装至T-25mm2组织培养瓶上。将GaMF1连同利福布汀分配至每个烧瓶中,并在37℃下以180rpm振荡孵育5天。从每个烧瓶中取出约10μl的培养物,随后用PBS连续稀释。在7H10琼脂板的每个象限上铺板25μl的相应稀释液的培养物。将琼脂板在37℃下孵育三天。通过计数板上的菌落形成单位(CFU)确定细菌成活力。Abscess mycobacterium culture was grown to exponential phase and diluted to OD600 of 0.005 and dispensed onto T- 25mm2 tissue culture flasks. GaMF1 was distributed to each flask along with rifabutin and incubated at 37°C with 180rpm shaking for 5 days. About 10 μl of culture was taken out from each flask and then serially diluted with PBS. 25 μl of the corresponding dilution culture was plated on each quadrant of a 7H10 agar plate. The agar plates were incubated at 37°C for three days. Bacterial viability was determined by counting colony forming units (CFU) on the plate.
结果与讨论Results and discussion
考虑GaMF1-利福布汀组合中增加的抗脓肿分枝杆菌活性和利福布汀的杀菌活性(Aziz,D.B.et al.,Antimicrob.Agents Chemother.2017,61,e00155-17;和Johansen,M.D.et al.,Antimicrob.Agents Chemother.2020,64,e00363-20),在脓肿分枝杆菌杀伤中,组合的GaMF1-利福布汀效应显示为仅是极小的(图5)。Considering the increased anti-M. abscessus activity in the GaMF1-rifabutin combination and the bactericidal activity of rifabutin (Aziz, D.B. et al., Antimicrob. Agents Chemother. 2017, 61, e00155-17; and Johansen, M.D. et al., Antimicrob. Agents Chemother. 2020, 64, e00363-20), the combined GaMF1-rifabutin effect in M. abscessus killing was shown to be only minimal (Figure 5).
总之,本研究表明,GaMF1在细胞生长抑制和杀伤脓肿分枝杆菌方面具有活性,与该化合物对结核分枝杆菌的活性相似。GaMF1作为新型脓肿分枝杆菌抑制剂的鉴定扩展了针对这种难以治愈的机会性NTM病原体的稀少化合物管线。通过靶向脓肿分枝杆菌的F-ATP合酶,GaMF1耗竭细胞ATP,这对细胞壁形成、复制、同化和分解代谢过程以及ATP依赖性外排泵至关重要。抑制后者可以阻碍药物流动,这已成为脓肿分枝杆菌中BDQ和CFZ耐药性的重要决定因素。最后,脓肿分枝杆菌显示出对GaMF1与CFZ、利福布汀或阿米卡星组合的增加的敏感性,这是治疗脓肿分枝杆菌感染的组合方法的先决条件。In conclusion, this study demonstrates that GaMF1 is active in cytostasis and cytotoxicity of M. abscessus, similar to the activity of this compound against M. tuberculosis. The identification of GaMF1 as a novel M. abscessus inhibitor expands the scarce pipeline of compounds against this difficult-to-treat opportunistic NTM pathogen. By targeting the F-ATP synthase of M. abscessus, GaMF1 depletes cellular ATP, which is essential for cell wall formation, replication, assimilation, and catabolic processes, as well as ATP-dependent efflux pumps. Inhibition of the latter can hamper drug flux, which has emerged as an important determinant of BDQ and CFZ resistance in M. abscessus. Finally, M. abscessus showed increased sensitivity to GaMF1 in combination with CFZ, rifabutin, or amikacin, a prerequisite for a combination approach to treat M. abscessus infections.
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