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CN117230111A - Construction method and application of passion fruit virus mediated gene silencing system - Google Patents

Construction method and application of passion fruit virus mediated gene silencing system Download PDF

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CN117230111A
CN117230111A CN202311088561.7A CN202311088561A CN117230111A CN 117230111 A CN117230111 A CN 117230111A CN 202311088561 A CN202311088561 A CN 202311088561A CN 117230111 A CN117230111 A CN 117230111A
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pepds
passion fruit
ptrv2
gene
ptrv1
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秦源
王路路
王小媚
柴改凤
郑平
黄东平
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Fujian Agriculture and Forestry University
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Fujian Agriculture and Forestry University
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Abstract

The application discloses a construction method and application of passion fruit virus mediated gene silencing system, wherein the construction method comprises the following steps: (1) extracting RNA of tender leaves of passion fruits, and carrying out reverse transcription to obtain cDNA; (2) selecting passion fruit PePDS gene as an interference fragment; (3) Designing specific upstream and downstream primers for PePDS amplification, carrying out cDNA fragment PCR amplification, and purifying to obtain a PePDS gene interference fragment; (4) The purified PePDS gene interference fragment is synchronously connected to a plant virus pTRV2 vector through a recombination reaction, and a passion fruit PePDS gene silencing system (pTRV 1, pTRV 2-PePDS) is constructed and obtained and named as TRV-PePDS. The TRV-PePDS constructed by the application can be applied to the processes of agrobacterium transformation and passion fruit leaf dip-dyeing, and has obvious silencing efficiency. The method can quickly and efficiently obtain the transgenic plant, and has strong stability and simple operation. The aim of quickly reducing the expression level of the target gene is fulfilled, the effect of knocking out the target gene is achieved, and the research progress of passion fruit functional genomics is quickened.

Description

百香果病毒介导的基因沉默体系的构建方法及其应用Construction method and application of passion fruit virus-mediated gene silencing system

技术领域Technical field

本发明属于植物基因工程技术领域,具体是一种通过病毒介导的百香果基因沉默技术。The invention belongs to the field of plant genetic engineering technology, and is specifically a virus-mediated passion fruit gene silencing technology.

背景技术Background technique

百香果(Passiflora edulis Sims),学名西番莲,西番莲科,西番莲属,为热带、亚热带多年生常绿藤本浆果类果树,因其具有浓郁特殊香气,广受消费者的喜爱。2021年宋和张等完成百香果全基因组的测序,为百香果功能基因组学的研究提供了重要参考。但是,由于百香果基因组杂合度高,基因组复杂,目前百香果遗传转化体系仍未建立,这极大的限制了百香果基因功能的研究。Passion fruit (Passiflora edulis Sims), whose scientific name is Passiflora, belongs to the Passiflora family and the genus Passiflora. It is a tropical and subtropical perennial evergreen vine berry fruit tree. It is widely loved by consumers because of its rich and special aroma. In 2021, Song and Zhang et al. completed the sequencing of the entire passion fruit genome, providing an important reference for the study of passion fruit functional genomics. However, due to the high heterozygosity and complexity of the passion fruit genome, a genetic transformation system for passion fruit has not yet been established, which greatly limits the study of passion fruit gene functions.

植物稳定遗传的突变体获得难度大,周期长,效率低。基因沉默在生物中普遍存在,表现在抵御病毒、转座子等外来核酸的入侵,识别并抑制外源基因表达,维持生物基因组稳定性等。病毒诱导的基因沉默(Virus-induced gene silencing,VIGS)是一种转录后基因沉默技术,作为一种有效的反向遗传学技术已经广泛应用于植物基因工程的研究中。其作用原理是携带目的基因片段的病毒侵染植物后,随着病毒的复制和转录而特异性的诱导序列同源基因mRNA降解或被甲基化等修饰,从而引起植物内源基因沉默、引起表型或生理指标变化,进而根据表型变异研究目标基因的功能。与传统的基因功能研究方法相比,VIGS能够在侵染植物当代对目标基因进行沉默和功能分析,无需开发稳定的转化子,并且具有沉默单个或多个基因家族成员的潜力。It is difficult to obtain stable genetic mutants of plants, the cycle is long and the efficiency is low. Gene silencing is ubiquitous in organisms, manifested in resisting the invasion of foreign nucleic acids such as viruses and transposons, identifying and inhibiting the expression of foreign genes, and maintaining the stability of biological genomes. Virus-induced gene silencing (VIGS) is a post-transcriptional gene silencing technology. As an effective reverse genetics technology, it has been widely used in plant genetic engineering research. Its principle of action is that after the virus carrying the target gene fragment infects the plant, as the virus replicates and transcribes, it specifically induces sequence homologous gene mRNA degradation or modification such as methylation, thereby silencing the plant's endogenous genes and causing Changes in phenotype or physiological indicators, and then study the function of the target gene based on the phenotypic variation. Compared with traditional gene function research methods, VIGS can silence and functionally analyze target genes in the present day of infected plants without the need to develop stable transformants, and has the potential to silence single or multiple gene family members.

由于VIGS技术操作简单,时间短,其一经建立,即被视为研究植物基因功能的强有力工具,得到了深入的研究和广泛应用,已用于烟草、番茄、小麦、水稻等植物的抗病反应、生长发育以及代谢调控的功能基因研究。其中由人工改良后的烟草脆裂病毒(tobaccorattle virus,TRV)诱导的基因沉默,以其沉默效率高、持续时间长(30-40天左右),寄主植物病毒症状轻,不会掩盖沉默表型等优点,成为目前应用最为广泛的一类基因沉默体系。但是目前,还未曾有以西番莲科、西番莲属植株为实验对象,建立病毒诱导基因沉默体系研究的报道。Because VIGS technology is simple to operate and takes a short time, once it was established, it was regarded as a powerful tool for studying plant gene functions. It has been deeply studied and widely used, and has been used for disease resistance in tobacco, tomatoes, wheat, rice and other plants. Functional gene studies on reaction, growth and development, and metabolism regulation. Among them, gene silencing induced by artificially modified tobacco rattle virus (TRV) is characterized by its high silencing efficiency and long duration (about 30-40 days). The host plant virus symptoms are mild and the silencing phenotype will not be masked. and other advantages, it has become the most widely used gene silencing system at present. However, so far, there have been no reports on establishing a virus-induced gene silencing system using Passiflora and Passiflora plants as experimental subjects.

百香果作为热带、亚热带多年生常绿植物,其生长周期相对较短,基因组小,有着巨大的科研价值。因此,现需研究一种能够快速、精准、高效的百香果病毒诱导的基因沉默技术。而病毒选择(TRV)、靶基因片段选择、介导转化农杆菌的活性、侵染液的配制、病毒载体的接种技术、接种时期、接种后培养植物材料的光温条件等因素都是影响病毒诱导基因沉默体系能否成功建立的关键。As a tropical and subtropical perennial evergreen plant, passion fruit has a relatively short growth cycle and a small genome, which has great scientific research value. Therefore, there is a need to develop a fast, accurate and efficient gene silencing technology induced by passion fruit virus. Factors such as virus selection (TRV), target gene fragment selection, activity in mediating transformation of Agrobacterium, preparation of infection solution, virus vector inoculation technology, inoculation period, and light and temperature conditions of cultured plant materials after inoculation all affect the virus. The key to the successful establishment of an induced gene silencing system.

发明内容Contents of the invention

为解决上述技术问题,本发明提供百香果病毒介导的基因沉默体系的构建方法及其应用,能够快速高效获得转基因植株,稳定性强,操作简单。实现了快速获得基因沉默目的,加快百香果功能基因组学的研究进程。In order to solve the above technical problems, the present invention provides a construction method and application of a passion fruit virus-mediated gene silencing system, which can quickly and efficiently obtain transgenic plants with strong stability and simple operation. The purpose of quickly obtaining gene silencing was achieved and the research process of passion fruit functional genomics was accelerated.

为了实现上述本发明的目的,采取如下技术方案:In order to achieve the above-mentioned purpose of the present invention, the following technical solutions are adopted:

百香果病毒介导的基因沉默体系的构建方法,包括以下步骤:The construction method of the passion fruit virus-mediated gene silencing system includes the following steps:

(1)提取百香果嫩叶的RNA,反转录获得cDNA;(1) Extract RNA from young passion fruit leaves and reverse-transcribe to obtain cDNA;

(2)选择百香果八氢番茄红素脱氢酶基因PePDS为保守干扰片段,如SEQ ID NO.1所示;(2) Select the passion fruit phytoene dehydrogenase gene PePDS as a conservative interference fragment, as shown in SEQ ID NO.1;

SEQ ID NO.1:SEQ ID NO.1:

ATGCCCTTCCACACCAAATTTTCCAAGTGAAGTAATTCTTGCTTCCAAGAAATGATTCTTATGCCCTTCCACAACCAAATTTTCCAAGTGAAGTAATTCTTGCTTCCAAGAAATGATTCTT

CATGCGAGTGTTCCTGCTTTGAATTTTAGCCGGCAAAGCAATGCCTTGGATGTTCGAAACCATGCGAGTGTTCCTGCTTTGAATTTTAGCCGGCAAAGCAATGCCTTGGATGTTCGAAAC

TGCCTTTCTTCTTCCCTCAGATGCGGTGCTCATCCTTCTTCTTTAAAAATTCAATCTGCAAATCCCCGTAAAGCAAGTCTCAGGAGTGTCT。TGCCTTTCTTCTTCCCTCAGATGCGGTGCTCATCCTTCTTCTTTAAAAATTCAATCTGCAAATCCCCGTAAAGCAAGTCTCAGGAGTGTCT.

(3)百香果八氢番茄红素脱氢酶基因PePDS扩增的特异性引物设计,上游引物:5’-GGGGACAAGTTTGTACAAAAAAGCAGGCTATGCCCTTCCACACCAAA-3’,下游引物:5’-GGGGACCACTTTGTACAAGAAAGCTGGGTAGACACTCCTGAGACTTG-3’,并进行cDNA片段PCR扩增,纯化后获得PePDS基因干扰片段;(3) Design of specific primers for amplification of passion fruit phytoene dehydrogenase gene PePDS, upstream primer: 5'-GGGGACAAGTTTGTACAAAAAAGCAGGCTATGCCCTTCCACACCAAA-3', downstream primer: 5'-GGGGACCACTTTGTACAAGAAAGCTGGGTAGACACTCCTGAGACTTG-3', and perform cDNA fragment PCR After amplification and purification, the PePDS gene interference fragment is obtained;

PCR扩增采用25μL体系进行扩增,包含:双蒸水18.5μL;cDNA 1μL;dNTP 2.5μL;耐热Taq酶1μL;上游引物1μL,下游引物1μL。PCR amplification was carried out using a 25 μL system, including: 18.5 μL double-distilled water; 1 μL cDNA; 2.5 μL dNTP; 1 μL heat-resistant Taq enzyme; 1 μL upstream primer and 1 μL downstream primer.

所述PCR扩增程序为98℃预变性3min;34个循环的98℃变性30s,62℃退火30s,72℃延伸30s;72℃后延伸5min,12℃保存,纯化后备用。The PCR amplification program was pre-denaturation at 98°C for 3 min; 34 cycles of denaturation at 98°C for 30 s, annealing at 62°C for 30 s, extension at 72°C for 30 s; post-extension at 72°C for 5 min, and storage at 12°C for later use after purification.

(4)将纯化的PePDS基因干扰片段通过重组反应同步连接到植物病毒pTRV2载体上,构建得到百香果八氢番茄红素脱氢酶基因PePDS沉默体系,转化成功后,即pTRV2-PePDS。(4) The purified PePDS gene interference fragment was synchronously connected to the plant virus pTRV2 vector through a recombination reaction to construct the passion fruit phytoene dehydrogenase gene PePDS silencing system. After successful transformation, it is pTRV2-PePDS.

所述步骤(4)包括BP反应和LR反应;所述BP反应是将纯化后获得PePDS基因干扰片段1μL,pDONR 207质粒1μL,Gateway BP Clonase 0.5μL,22℃连接过夜;连接后产物转化大肠杆菌DH5α感受态细胞,涂布于含100mg/L硫酸庆大霉素抗生素的LB平板培养基,37℃倒置过夜培养;挑取单克隆至含有100mg/L硫酸庆大霉素抗生素的液体LB培养基中,37℃,200rpm/min震荡培养12h,提取质粒,测序正确后备用;The step (4) includes BP reaction and LR reaction; the BP reaction is to combine 1 μL of the purified PePDS gene interference fragment, 1 μL of pDONR 207 plasmid, 0.5 μL of Gateway BP Clonase, and ligate overnight at 22°C; the ligated product is transformed into E. coli DH5α competent cells were spread on LB plate culture medium containing 100 mg/L gentamicin sulfate antibiotic and cultured overnight at 37°C; single clones were picked into liquid LB culture medium containing 100 mg/L gentamicin sulfate antibiotic. Medium, 37℃, 200rpm/min shaking culture for 12h, extract the plasmid, and sequence it correctly for later use;

所述LR反应是转化后的含有PePDS基因片段的pDONR 207质粒1μL,pTRV2质粒1μL,Gateway LR Clonase 0.5μL,置于22℃,黑暗连接3 -5h;连接产物转化大肠杆菌DH5α感受态细胞,涂布于含100mg/L卡纳霉素抗生素的LB平板培养基,37℃倒置过夜培养,挑取单克隆至含有100mg/L卡纳霉素抗生素的液体LB培养基中,37℃,250rpm/min震荡培养12h,PCR鉴定,提取质粒,连接成功的载体命名为pTRV2-PePDS。The LR reaction is 1 μL of transformed pDONR 207 plasmid containing the PePDS gene fragment, 1 μL of pTRV2 plasmid, and 0.5 μL of Gateway LR Clonase, placed at 22°C, and ligated in the dark for 3-5 h; the ligation product was transformed into E. coli DH5α competent cells, and coated Distribute on LB plate culture medium containing 100mg/L kanamycin antibiotic, incubate overnight at 37℃, pick single clones into liquid LB culture medium containing 100mg/L kanamycin antibiotic, 37℃, 250rpm/min After shaking culture for 12 hours, PCR identification was performed, the plasmid was extracted, and the successfully connected vector was named pTRV2-PePDS.

本发明的百香果病毒介导的基因沉默体系的构建方法在鉴定百香果八氢番茄红素脱氢酶基因PePDS基因功能中的应用。The construction method of the passion fruit virus-mediated gene silencing system of the present invention is applied in identifying the function of the passion fruit phytoene dehydrogenase gene PePDS.

本发明的应用在农杆菌转化,具体操作,将pTRV1,pTRV2和构建好的pTRV2-PePDS质粒采用电转法进行农杆菌转化,具体操作为:取pTRV1,pTRV2和构建好的pTRV2-PePDS质粒加入到农杆菌GV3101感受态细胞中,混匀后转入到预冷后的电转杯,而后放入电转仪进行电击转化;完成电转后迅速向电转杯中加入空白LB培养基,重悬细胞后将混合液转移到灭菌后的离心管,随后放入摇床28℃,180-220rpm/min复苏2h;离心,弃上清,留下菌液,涂布于Kan+抗生素和利福平抗生素(Rif)的LB平板培养基,28℃倒置培养48h,长出单克隆,挑取单克隆至含有100mg/L Kan+抗生素和Rif+抗生素的液体LB培养基中,28℃,180-220rpm/min震荡培养12h,PCR鉴定,得到含有pTRV1,pTRV2和pTRV2-PePDS质粒的农杆菌GV3101阳性菌株,将由pTRV1和pTRV2构成的病毒命名为:TRV-00,由pTRV1和pTRV2-PePDS构成的病毒命名为:TRV-PePDS。使用50%甘油保菌,放置于-80℃备用。The present invention is applied in Agrobacterium transformation. The specific operation is to use electroporation method to transform pTRV1, pTRV2 and the constructed pTRV2-PePDS plasmid into Agrobacterium. The specific operation is: take pTRV1, pTRV2 and the constructed pTRV2-PePDS plasmid and add it to Agrobacterium tumefaciens GV3101 competent cells, mix well and transfer to a pre-cooled electroporation cup, and then put it into an electroporation instrument for electroporation transformation; after completing the electroporation, quickly add blank LB medium to the electroporation cup, resuspend the cells and mix Transfer the liquid to a sterilized centrifuge tube, then put it into a shaker at 28°C and resuscitate at 180-220 rpm/min for 2 hours; centrifuge, discard the supernatant, leave the bacterial liquid, and apply it to Kan + antibiotics and rifampicin antibiotics (Rif ) LB plate culture medium, culture it upside down at 28°C for 48 hours, grow a single colony, pick the single clone into a liquid LB medium containing 100mg/L Kan + antibiotics and Rif + antibiotics, shake at 28°C at 180-220rpm/min After culturing for 12 hours, PCR identification was carried out to obtain a positive Agrobacterium GV3101 strain containing pTRV1, pTRV2 and pTRV2-PePDS plasmids. The virus composed of pTRV1 and pTRV2 was named: TRV-00, and the virus composed of pTRV1 and pTRV2-PePDS was named: TRV. -PePDS. Use 50% glycerin to preserve bacteria and place it at -80°C for later use.

本发明在侵染百香果叶片中的应用,具体操作:(1)配制侵染液,将含有pTRV1,pTRV2和pTRV2-PePDS农杆菌GV3101菌液,划线与含有抗生素的LB平板,28℃培养;挑取单克隆,加入LB液体培养基中,28℃条件下,震荡避光培养10-12h,以实现单克隆扩增;扩增后的单克隆菌液按照1:100加入含抗生素的LB液体培养基,进行扩大培养,28℃,避光培养12-24h;离心,弃掉LB培养液,收集菌体;使用侵染液将菌体重新悬浮,加适量侵染缓冲液,调节菌液OD(600)至1.8;将OD(600)=1.8的pTRV1和pTRV2(TRV-00)、pTRV1和pTRV2-PePDS(TRV-PePDS)按1:1体积混合,室温避光孵育3h,获得农杆菌侵染液。The application of the present invention in infecting passion fruit leaves includes the following specific operations: (1) Prepare the infection solution, mix the Agrobacterium GV3101 bacterial solution containing pTRV1, pTRV2 and pTRV2-PePDS with an LB plate containing antibiotics, and culture at 28°C ; Pick a single clone, add it to LB liquid culture medium, and culture it with shaking and in the dark for 10-12 hours at 28°C to achieve single clone amplification; add LB containing antibiotics to the amplified single clone liquid at a ratio of 1:100 Liquid culture medium, conduct expanded culture, culture at 28°C in the dark for 12-24 hours; centrifuge, discard the LB culture medium, and collect the bacterial cells; use the infection solution to resuspend the bacterial cells, add an appropriate amount of infection buffer, and adjust the bacterial liquid OD (600) to 1.8; mix pTRV1 and pTRV2 (TRV-00), pTRV1 and pTRV2-PePDS (TRV-PePDS) with OD (600) = 1.8 at a volume of 1:1, and incubate at room temperature in the dark for 3 hours to obtain Agrobacterium Infectious fluid.

所述侵染缓冲液为10mM吗啉乙磺酸、100μM乙酰丁香酮和10mM MgC12The infection buffer is 10mM morpholinoethanesulfonic acid, 100μM acetosyringone and 10mM MgC1 2 .

(2)将TRV-00和TRV-PePDS农杆菌侵染液注射至百香果嫩叶叶片背面无叶脉处,使侵染液扩散整个叶片,侵染后的百香果小苗黑暗培养48h,后正常培养,25℃,16/8h昼夜周期,然后进行观察鉴定。(2) Inject the TRV-00 and TRV-PePDS Agrobacterium infection solutions into the veinless area on the back of young passion fruit leaves, allowing the infection solution to spread throughout the leaves. After infection, the passion fruit seedlings are cultured in the dark for 48 hours, and then cultured normally. , 25℃, 16/8h day and night cycle, and then conduct observation and identification.

本发明的有益效果:Beneficial effects of the present invention:

(1)本发明的百香果病毒介导的基因沉默体系,能够快速高效获得转基因植株,稳定性强,操作简单,实现了快速降低目的基因表达水平,达到敲除目的基因的效果,加快百香果功能基因组学的研究进程。(1) The passion fruit virus-mediated gene silencing system of the present invention can quickly and efficiently obtain transgenic plants, has strong stability, and is simple to operate. It can quickly reduce the expression level of the target gene, achieve the effect of knocking out the target gene, and accelerate the growth of passion fruit. Research progress in functional genomics.

(2)在百香果叶片侵染实验过程中,本发明构建的TRV-PePDS载体侵染后,百香果叶片出现明显的白化现象;说明本发明的方法使得百香果PePDS基因发挥了沉默效应。且在荧光定量PCR对进百香果PePDS基因的表达量检测中,本发明的TRV-PePDS侵染组的PePDS基因表达量仅是对照组的0.38,显著低于对照组。本发明的TRV-PePDS侵染后百香果PePDS基因的表达量明显降低。说明本发明的方法能有效验证百香果基因的表达情况。(2) During the infection experiment of passion fruit leaves, after infection with the TRV-PePDS vector constructed in the present invention, the passion fruit leaves showed obvious whitening phenomenon; indicating that the method of the present invention exerted a silencing effect on the passion fruit PePDS gene. And in the fluorescence quantitative PCR detection of the expression level of the PePDS gene in passion fruit, the expression level of the PePDS gene in the TRV-PePDS infected group of the present invention was only 0.38 of that of the control group, which was significantly lower than that of the control group. After infection by TRV-PePDS of the present invention, the expression level of the passion fruit PePDS gene is significantly reduced. It shows that the method of the present invention can effectively verify the expression of passion fruit genes.

附图说明Description of drawings

图1为百香果PePDS基因PCR产物电泳检测图;Figure 1 shows the electrophoresis detection chart of passion fruit PePDS gene PCR product;

图2为百香果PePDS基因沉默效率对比图;Figure 2 is a comparison chart of passion fruit PePDS gene silencing efficiency;

图3为植物侵染20天后PePDS基因表达量检测对比图;Figure 3 is a comparison chart of PePDS gene expression detection 20 days after plant infection;

具体实施方式Detailed ways

为了使本技术领域的人员更好的理解本申请中的技术方案,下面将结合附图和实施例来对本发明的技术方案进行清楚、完整地描述,显然,所描述的实施例仅仅是本申请的一部分实施例,基于本申请中的实施例,本领域普通技术人员在没有做出创造性劳动前提下所获得的所有其他实施例,都应当属于本申请保护的范围。In order to enable those skilled in the art to better understand the technical solutions in this application, the technical solutions of the present invention will be clearly and completely described below in conjunction with the accompanying drawings and embodiments. Obviously, the described embodiments are only for the purpose of this application. Based on the embodiments in this application, all other embodiments obtained by those of ordinary skill in the art without making creative efforts should fall within the scope of protection of this application.

实施例Example

一、百香果病毒介导的基因沉默体系构建1. Construction of passion fruit virus-mediated gene silencing system

1、种子播种:取百香果种子,首先用20mM的GA3溶液浸泡处理,其次置于30℃培养箱过夜;而后播种于疏松营养土中,盖上育苗罩,并关闭通风口,保持土壤温度湿度;将播种后的育苗盘放于30℃,16/8h昼夜周期的温室培养,一个月后长出两片子叶和两片真叶。1. Seed sowing: Take passion fruit seeds, first soak them in 20mM GA3 solution, and then place them in a 30°C incubator overnight; then sow them in loose nutrient soil, cover them with a seedling cover, and close the vents to maintain soil temperature and humidity. ; Place the sown seedling trays in a greenhouse at 30°C with a 16/8h day and night cycle. Two cotyledons and two true leaves will grow after one month.

2、载体构建:用基因工程的方法,将扩增后的百香果八氢番茄红素脱氢酶基因(下称:PePDS)片段连接到TRV病毒诱导基因沉默载体pTRV2中,获得pTRV2-PePDS载体。具体操作如下:2. Vector construction: Use genetic engineering methods to connect the amplified passion fruit phytoene dehydrogenase gene (hereinafter referred to as: PePDS) fragment into the TRV virus-induced gene silencing vector pTRV2 to obtain the pTRV2-PePDS vector. . The specific operations are as follows:

(1)RNA提取及cDNA合成:按照说明书,使用Trizol法提取百香果嫩叶片的总RNA;根据反转录试剂盒操作说明,使用1μg RNA为模板进行cDNA合成,完成后稀释5倍备用。(1) RNA extraction and cDNA synthesis: According to the instructions, use the Trizol method to extract total RNA from young passion fruit leaves; according to the instructions of the reverse transcription kit, use 1 μg RNA as a template for cDNA synthesis. After completion, dilute 5 times for later use.

(2)选择百香果八氢番茄红素脱氢酶基因PePDS为保守干扰片段,如SEQ ID NO.1所示。(2) Select the passion fruit phytoene dehydrogenase gene PePDS as a conservative interference fragment, as shown in SEQ ID NO.1.

PDS为保守干扰片段序列:PDS is the conserved interference fragment sequence:

ATGCCCTTCCACACCAAATTTTCCAAGTGAAGTAATTCTTGCTTCCAAGAAATGATTCTTATGCCCTTCCACAACCAAATTTTCCAAGTGAAGTAATTCTTGCTTCCAAGAAATGATTCTT

CATGCGAGTGTTCCTGCTTTGAATTTTAGCCGGCAAAGCAATGCCTTGGATGTTCGAAACCATGCGAGTGTTCCTGCTTTGAATTTTAGCCGGCAAAGCAATGCCTTGGATGTTCGAAAC

TGCCTTTCTTCTTCCCTCAGATGCGGTGCTCATCCTTCTTCTTTAAAAATTCAATCTGCAATGCCTTTCTTCTTCCCTCAGATGCGGTGCTCATCCTTCTTCTTTAAAAATTCAATCTGCAA

ATCCCCGTAAAGCAAGTCTCAGGAGTGTCTATCCCCGTAAAGCAAGTCTCAGGAGTGTCT

对PDS基因设计引物进行PCR扩增:Design primers for PDS gene for PCR amplification:

上游引物:Upstream primer:

5’-GGGGACAAGTTTGTACAAAAAAGCAGGCTATGCCCTTCCACACCAAA-3’,5’-GGGGACAAGTTTGTACAAAAAAGCAGGCTATGCCCTTCCACACCAAA-3’,

下游引物:5’-GGGGACCACTTTGTACAAGAAAGCTGGGTAGACACTCCTGAGACTTG-3’,PCR产物为269bp大小。Downstream primer: 5’-GGGGACCACTTTGTACAAGAAAGCTGGGTAGACACTCCTGAGACTTG-3’, the PCR product is 269 bp in size.

以上述合成的百香果的cDNA为模板,用25μL体系进行扩增;包含:双蒸18.5μL;cDNA 1μL;dNTP 2.5μL;耐热Taq酶1μL;上游引物1μL,下游引物1μL;Use the above-synthesized passion fruit cDNA as a template and use a 25 μL system for amplification; including: 18.5 μL of double distilled water; 1 μL of cDNA; 2.5 μL of dNTP; 1 μL of heat-resistant Taq enzyme; 1 μL of upstream primer and 1 μL of downstream primer;

扩增程序为98℃预变性3min;34个循环的98℃变性30s,62℃退火30s,72℃延伸30s;72℃后延伸5min,12℃保存;PCR产物经电泳检测为单一条带,如图1所示,从图1可知PePDS基因片段大小为269bp,纯化后备用。The amplification program is pre-denaturation at 98°C for 3 minutes; 34 cycles of denaturation at 98°C for 30 seconds, annealing at 62°C for 30 seconds, extension at 72°C for 30 seconds; post-extension at 72°C for 5 minutes, and storage at 12°C; the PCR product is detected as a single band by electrophoresis, such as As shown in Figure 1, it can be seen from Figure 1 that the size of the PePDS gene fragment is 269 bp and will be used after purification.

(3)BP反应,将上述步骤(2)纯化的PePDS基因片段1μL,pDONR 207质粒1μL,Gateway BP Clonase 0.5μL,22℃连接过夜。将连接产物转化大肠杆菌DH5α感受态细胞,涂布于含100mg/L硫酸庆大霉素(Gen+)抗生素的LB平板培养基,37℃倒置过夜培养;挑取单克隆至含有100mg/L Gen+抗生素的液体LB培养基中,37℃,200rpm/min震荡培养12h,提取质粒,测序正确后备用;(3) BP reaction, combine 1 μL of the PePDS gene fragment purified in the above step (2), 1 μL of pDONR 207 plasmid, and 0.5 μL of Gateway BP Clonase, and ligate at 22°C overnight. Transform the ligation product into Escherichia coli DH5α competent cells, spread on LB plate medium containing 100 mg/L gentamicin sulfate (Gen + ) antibiotic, and incubate overnight at 37°C; single clones are picked until they contain 100 mg/L Gen + Antibiotic liquid LB culture medium, 37℃, 200rpm/min shaking culture for 12 hours, extract the plasmid, and sequence it correctly for later use;

(4)LR反应,将步骤(3)转化后的pDONR 207质粒(含有PePDS基因片段)1μL,pTRV2质粒1μL,Gateway LR Clonase 0.5μL,置于22℃,黑暗连接3h-5h;连接产物转化大肠杆菌DH5α感受态细胞,涂布于含100mg/L卡纳霉素(Kan+)抗生素的LB平板培养基,37℃倒置过夜培养,挑取单克隆至含有100mg/L Kan抗生素的液体LB培养基中,37℃,250转每分钟震荡培养12小时,PCR鉴定,提取质粒,备用。连接成功的载体命名为pTRV2-PePDS。(4) LR reaction, add 1 μL of pDONR 207 plasmid (containing the PePDS gene fragment) transformed in step (3), 1 μL of pTRV2 plasmid, and 0.5 μL of Gateway LR Clonase, place at 22°C, and ligate in the dark for 3h-5h; the ligation product is transformed into the large intestine Bacillus DH5α competent cells were spread on LB plate culture medium containing 100 mg/L kanamycin (Kan + ) antibiotic, incubated overnight at 37°C, and single clones were picked into liquid LB culture medium containing 100 mg/L Kan antibiotic. Medium, 37°C, 250 rpm shaking culture for 12 hours, PCR identification, extract plasmid, set aside. The successfully connected vector was named pTRV2-PePDS.

二、pTRV2-PePDS载体的农杆菌转化2. Agrobacterium transformation of pTRV2-PePDS vector

将pTRV1、pTRV2和构建好的pTRV2-PePDS质粒分别用电转法转化到农杆菌GV3101感受态细胞中,经菌液PCR鉴定正确后,得到分别含有质粒pTRV1、pTRV2和pTRV2-PePDS的农杆菌GV3101阳性菌株,将由pTRV1和pTRV2构成的病毒命名为:TRV-00;由pTRV1和pTRV2-PePDS构成的病毒命名为:TRV-PePDS。使用50%甘油保菌,放置于-80℃备用;pTRV1, pTRV2 and the constructed pTRV2-PePDS plasmids were transformed into Agrobacterium GV3101 competent cells by electroporation respectively. After bacterial liquid PCR identification, Agrobacterium GV3101 containing plasmids pTRV1, pTRV2 and pTRV2-PePDS respectively was obtained. For positive strains, the virus composed of pTRV1 and pTRV2 is named: TRV-00; the virus composed of pTRV1 and pTRV2-PePDS is named: TRV-PePDS. Use 50% glycerol to preserve bacteria and place it at -80°C for later use;

电转法具体步骤:取5μL pTRV1、pTRV2以及pTRV2-PePDS质粒缓慢加入到50μL农杆菌GV3101感受态细胞中,混匀后转入到预冷后的电转杯,而后放入电转仪,电压1.2kV进行电击转化;完成电转,迅速向电转杯中加入600μL空白LB培养基,重悬细胞后将混合液转移到灭菌后的1.5mL离心管,随后放入摇床28℃,180-220rpm/min复苏2h;4000rpm/min,离心5min,弃上清,剩余100μL菌液,涂布于含100mg/L Kan+抗生素和Rif+的LB平板培养基,28℃倒置培养48h,长出单克隆,挑取单克隆至含有100mg/L Kan+抗生素和Rif+抗生素的液体LB培养基中,28℃,180-220rpm/min震荡培养12h,PCR鉴定,-80℃保存备用。Specific steps of the electroporation method: slowly add 5 μL of pTRV1, pTRV2, and pTRV2-PePDS plasmids to 50 μL of Agrobacterium GV3101 competent cells, mix well, transfer to a pre-cooled electroporation cup, and then put it into an electroporation machine at a voltage of 1.2 kV. Electroporation transformation; complete the electroporation, quickly add 600 μL of blank LB culture medium to the electroporation cup, resuspend the cells, transfer the mixture to a sterilized 1.5 mL centrifuge tube, and then place it in a shaker at 28°C and resuscitate at 180-220 rpm/min. 2h; centrifuge at 4000rpm/min for 5min, discard the supernatant, and the remaining 100μL bacterial liquid is spread on the LB plate medium containing 100mg/L Kan + antibiotics and Rif + , and incubate upside down at 28°C for 48h. Single clones grow and are picked. Single clone into liquid LB medium containing 100 mg/L Kan + antibiotic and Rif + antibiotic, culture at 28°C with shaking at 180-220 rpm/min for 12 hours, identify by PCR, and store at -80°C for later use.

三、植株侵染3. Plant infection

1、配制侵染液1. Prepare infection solution

(1)将保存的pTRV1、pTRV2和pTRV2-PePDS农杆菌GV3101菌液,划线与含有抗生素的LB平板,28℃培养;随后挑取单克隆,加入1.5mL LB液体培养基中,28℃条件下,180-200rpm/min震荡避光培养10-12h,以实现单克隆扩增;(1) Streak the stored pTRV1, pTRV2 and pTRV2-PePDS Agrobacterium GV3101 bacterial solution on an LB plate containing antibiotics and culture it at 28°C; then pick a single clone and add it to 1.5 mL of LB liquid culture medium at 28°C. Next, shake at 180-200rpm/min and culture in the dark for 10-12h to achieve monoclonal amplification;

(2)将上述扩增后的单克隆菌液按照1:100加入含抗生素的LB液体培养基,进行扩大培养,28℃,200rpm/min,避光培养12-24h,至OD(600)=1.2左右。(2) Add the amplified monoclonal bacterial liquid to LB liquid culture medium containing antibiotics at a ratio of 1:100, and conduct expanded culture at 28°C, 200 rpm/min, and culture in the dark for 12-24 hours until OD (600) = Around 1.2.

(3)4000rpm,离心15min,弃掉LB培养液,收集菌体;(3) 4000rpm, centrifuge for 15 minutes, discard the LB culture medium, and collect the bacteria;

(4)使用侵染液将菌体重新悬浮,加适量侵染缓冲液,调节菌液OD(600)至1.8。将OD(600)=1.8的pTRV1分别与pTRV2和pTRV2-PePDS按1:1体积混合,室温避光孵育3h,形成TRV-00和TRV-PePDS两种农杆菌侵染液。(4) Use the infection solution to resuspend the bacteria, add an appropriate amount of infection buffer, and adjust the OD (600) of the bacterial solution to 1.8. Mix pTRV1 with OD(600)=1.8 with pTRV2 and pTRV2-PePDS at a volume of 1:1 respectively, and incubate in the dark at room temperature for 3 hours to form two Agrobacterium infection solutions, TRV-00 and TRV-PePDS.

侵染缓冲液:10mM吗啉乙磺酸(MES)、100μM乙酰丁香酮(AS)、10mM MgC12Infection buffer: 10mM morpholinoethanesulfonic acid (MES), 100μM acetosyringone (AS), 10mM MgC1 2 .

2、注射法侵染2. Infection by injection

(1)选取生长状况良好,大小适宜(包含两片真叶和两片子叶)的百香果苗,做好标记;(1) Select passion fruit seedlings that are in good growth condition and of suitable size (including two true leaves and two cotyledons) and mark them;

(2)取出暗置后的农杆菌侵染液,混匀后,用1mL注射器吸取少量侵染液,拔掉针头,将注射器吸头抵至叶片背面无叶脉处,轻推注射器尾部使侵染液在叶片背面扩散,重复操作多次,直至侵染液扩散整个叶片。对于不易扩散的百香果叶片,可用注射器针头轻轻在叶片背面无叶脉处扎几个小孔,以不扎透叶片为宜,扎孔后用注射器注射,可快速扩散。(2) Take out the Agrobacterium infection solution that has been placed in the dark, mix it well, use a 1mL syringe to absorb a small amount of the infection solution, pull out the needle, put the tip of the syringe to the back of the leaf without veins, and gently push the tail of the syringe to infect The liquid spreads on the back of the leaves, and the operation is repeated several times until the infection liquid spreads throughout the leaves. For passion fruit leaves that are difficult to spread, you can use a syringe needle to gently prick a few small holes on the back of the leaf without veins. It is better not to penetrate the leaf. After pricking the holes, use a syringe to inject, which can spread quickly.

(3)侵染完成后,首先,将对照和侵染后的百香果小苗黑暗培养48h,后正常培养,25℃,16/8h昼夜周期。(3) After the infection is completed, first, control and infected passion fruit seedlings are cultured in the dark for 48 hours, and then cultured normally at 25°C with a 16/8 hour day and night cycle.

四、基因沉默效率检验4. Gene silencing efficiency test

侵染10天后,进行对比观察,如图2所示。图2(a)为TRV-00对照组百香果叶片发育正常;图2(b)本发明TRV-PePDS侵染后,百香果叶片出现白化现象;说明本发明的方法使得百香果PePDS基因发挥了沉默效应。After 10 days of infection, comparative observations were made, as shown in Figure 2. Figure 2(a) shows that the passion fruit leaves in the TRV-00 control group develop normally; Figure 2(b) shows that after infection by TRV-PePDS of the present invention, the passion fruit leaves appear albino; indicating that the method of the present invention enables the passion fruit PePDS gene to exert its functions Silence effect.

侵染20天后使用荧光定量PCR对进百香果PePDS基因的表达量进行检测,获得图3。由图3可知,与对照组(TRV-00)中的PePDS基因表达量相比,本发明的TRV-PePDS侵染组的PePDS基因表达量是仅有0.38,显著低于对照组。本发明的TRV-PePDS侵染后百香果PePDS基因的表达量明显降低。说明本发明的方法能有效验证百香果基因的表达情况。After 20 days of infection, fluorescence quantitative PCR was used to detect the expression of the PePDS gene in passion fruit, and Figure 3 was obtained. As can be seen from Figure 3, compared with the PePDS gene expression in the control group (TRV-00), the PePDS gene expression in the TRV-PePDS infection group of the present invention is only 0.38, which is significantly lower than the control group. After infection by TRV-PePDS of the present invention, the expression level of the passion fruit PePDS gene is significantly reduced. It shows that the method of the present invention can effectively verify the expression of passion fruit genes.

显然,上述实施例仅仅是为清楚地说明所作的举例,而并非对实施方式的限定。对于所属领域的普通技术人员来说,在上述说明的基础上还可以做出其它不同形式的变化或变动。这里无需也无法对所有的实施方式予以穷举。而由此所引伸出的显而易见的变化或变动仍处于本发明创造的保护范围之内。Obviously, the above-mentioned embodiments are only examples for clear explanation and are not intended to limit the implementation. For those of ordinary skill in the art, other different forms of changes or modifications can be made based on the above description. An exhaustive list of all implementations is neither necessary nor possible. The obvious changes or modifications derived therefrom are still within the protection scope of the present invention.

Claims (8)

1. The construction method of passion fruit virus mediated gene silencing system is characterized by comprising the following steps: the method comprises the following steps:
(1) Extracting RNA of passion fruit tender leaves, and carrying out reverse transcription to obtain cDNA;
(2) Selecting passion fruit phytoene dehydrogenase gene PePDS as a conserved interference fragment, as shown in SEQ ID NO. 1;
(3) Specific primer design of passion fruit phytoene dehydrogenase gene PePDS amplification, and upstream primer: 5'-GGGGACAAGTTTGTACAAAAAAGCAGGCTATGCCCTTCCACACCAAA-3', downstream primer: 5'-GGGGACCACTTTGTACAAGAAAGCTGGGTAGACACTCCTGAGACTTG-3', performing cDNA fragment PCR amplification and purification to obtain a PePDS gene interference fragment;
(4) The purified PePDS gene interference fragment is synchronously connected to a plant virus pTRV2 carrier through a recombination reaction, and a passion fruit phytoene dehydrogenase gene PePDS silencing system which is pTRV1, pTRV2-PePDS is constructed, and after the transformation is successful, the TRV-PePDS is obtained.
2. The method for constructing passion fruit virus mediated gene silencing system according to claim 1, wherein: the step (3) of PCR amplification is carried out by adopting a 25 mu L system, and comprises the following steps: 18.5 mu L of double distilled water; 1 μl of cDNA; dNTP 2.5. Mu.L; 1 mu L of thermostable Taq enzyme; 1. Mu.L of the upstream primer and 1. Mu.L of the downstream primer.
3. The method for constructing passion fruit virus mediated gene silencing system according to claim 2, wherein: the PCR amplification procedure is that the PCR amplification is performed for 3min at 98 ℃;34 cycles of denaturation at 98℃for 30s, annealing at 62℃for 30s, and extension at 72℃for 30s; extending for 5min at 72deg.C, preserving at 12deg.C, and purifying.
4. The method for constructing passion fruit virus mediated gene silencing system according to claim 1, wherein: the step (4) comprises a BP reaction and an LR reaction; the BP reaction is to obtain 1 mu L of PePDS gene interference fragment after purification, 1 mu L of pDONR 207 plasmid, gateway BP Clonase 0.5.5 mu L and overnight connection at 22 ℃; e.coli DH5 alpha competent cells are transformed from the product after connection, and the cells are coated on LB plate medium containing 100mg/L gentamycin sulfate antibiotics, and are cultured in an inverted way at 37 ℃ overnight; selecting a monoclonal to a liquid LB culture medium containing 100mg/L gentamycin sulfate antibiotics, performing shake culture at 37 ℃ for 12 hours at 200 revolutions per minute, extracting plasmids, and sequencing correctly for later use;
the LR reaction is that 1 mu L of the transformed pDONR 207 plasmid containing the PePDS gene fragment, 1 mu L of the pTRV2 plasmid and Gateway LR Clonase 0.5.5 mu L are placed at 22 ℃ and connected in darkness for 3-5 hours; e.coli DH5 alpha competent cells are transformed by the connection product, the cells are coated on LB plate medium containing 100mg/L of the calicheamicin antibiotics, the cells are cultured in an inverted way at 37 ℃ overnight, the monoclonal cells are picked up to be cultured in liquid LB medium containing 100mg/L of the calicheamicin antibiotics by shaking at 37 ℃ for 12 hours at 250 revolutions per minute, the plasmids are identified by PCR, and the successfully connected vector is named pTRV2-PePDS.
5. Use of the method for constructing passion fruit virus mediated gene silencing system according to any of claims 1-4 for identifying passion fruit phytoene dehydrogenase gene PePDS gene function.
6. The use according to claim 5, characterized in that: the pTRV1, pTRV2 and the constructed pTRV2-PePDS plasmid are subjected to agrobacterium transformation by an electrotransformation method, and the specific operations are as follows: adding pTRV1, pTRV2 and constructed pTRV2-PePDS plasmid into competent cells of agrobacterium GV3101, mixing, transferring to a precooled electric rotating cup, and then placing into an electric rotating instrument for electric shock conversion; after the electrotransformation is finished, a blank LB culture medium is rapidly added into an electrotransformation cup, after the cells are resuspended, the mixed solution is transferred into a sterilized centrifuge tube, and then the centrifuge tube is placed into a shaking table at 28 ℃ for resuscitation at 180-220rpm for 2 hours; centrifuging, discarding the supernatant, leaving bacterial liquid, coating on LB plate culture medium of Kan antibiotics and rifampicin antibiotics, inversely culturing at 28 ℃ for 48 hours, growing monoclonal, picking the monoclonal into liquid LB culture medium containing 100mg/L Kan antibiotics and Rif antibiotics, shake culturing at 28 ℃ at 180-220rpm/min for 12 hours, and carrying out PCR identification to obtain agrobacterium GV3101 positive strain containing plasmids pTRV1, pTRV2 and pTRV2-PePDS, wherein the viruses formed by pTRV1 and pTRV2 are named as follows: TRV-00; the viruses consisting of pTRV1 and pTRV2-PePDS are designated: TRV-PePDS is sterilized with 50% glycerol and placed at-80 ℃ for standby.
7. Use according to claim 5 or 6, characterized in that: application in the infection of passion fruit leaves, and the specific operation is as follows: (1) Preparing an invader solution, and culturing agrobacterium GV3101 bacterial solution containing pTRV1, pTRV2 and pTRV2-PePDS plasmids, streaking and LB plates containing antibiotics at 28 ℃; selecting a monoclonal, adding the monoclonal into an LB liquid culture medium, and shake light-shielding culture for 10-12 hours at the temperature of 28 ℃ to realize monoclonal amplification; adding the amplified monoclonal bacterial liquid into LB liquid culture medium containing antibiotics according to a ratio of 1:100, performing amplification culture, and performing light-shielding culture for 12-24 hours at 28 ℃; centrifuging, discarding LB culture solution, and collecting thalli; re-suspending the bacteria by using an infection solution, adding a proper amount of infection buffer solution, and regulating the OD (600) of the bacteria solution to 1.8; pTRV1 and pTRV2, pTRV1 and pTRV2-PePDS with OD (600) =1.8 were combined at 1:1 volume mixing, and incubating for 3 hours at room temperature in a dark place to obtain an agrobacterium infection solution;
(2) And (3) injecting the agrobacterium infection liquid to the position without veins on the back of the tender leaf blade of the passion fruit, so that the infection liquid diffuses the whole blade.
8. The use according to claim 7, characterized in that: the infection buffer is 10mM morpholinoethanesulfonic acid, 100 mu M acetosyringone and 10mM MgC1 2
CN202311088561.7A 2023-08-28 2023-08-28 Construction method and application of passion fruit virus mediated gene silencing system Pending CN117230111A (en)

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