CN117186178B - Polypeptide and preparation method thereof - Google Patents
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- CN117186178B CN117186178B CN202311121663.4A CN202311121663A CN117186178B CN 117186178 B CN117186178 B CN 117186178B CN 202311121663 A CN202311121663 A CN 202311121663A CN 117186178 B CN117186178 B CN 117186178B
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Classifications
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K7/00—Peptides having 5 to 20 amino acids in a fully defined sequence; Derivatives thereof
- C07K7/04—Linear peptides containing only normal peptide links
- C07K7/06—Linear peptides containing only normal peptide links having 5 to 11 amino acids
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K7/00—Peptides having 5 to 20 amino acids in a fully defined sequence; Derivatives thereof
- C07K7/04—Linear peptides containing only normal peptide links
- C07K7/08—Linear peptides containing only normal peptide links having 12 to 20 amino acids
Landscapes
- Chemical & Material Sciences (AREA)
- Organic Chemistry (AREA)
- Genetics & Genomics (AREA)
- Biochemistry (AREA)
- Biophysics (AREA)
- General Health & Medical Sciences (AREA)
- Health & Medical Sciences (AREA)
- Medicinal Chemistry (AREA)
- Molecular Biology (AREA)
- Proteomics, Peptides & Aminoacids (AREA)
- Life Sciences & Earth Sciences (AREA)
- Peptides Or Proteins (AREA)
- Medicines That Contain Protein Lipid Enzymes And Other Medicines (AREA)
Abstract
Description
技术领域Technical Field
本发明涉及生化领域,具体为一种多肽衍及其制备方法。The invention relates to the biochemical field, in particular to a polypeptide derivative and a preparation method thereof.
背景技术Background Art
前列腺癌(prostate cancer,PCa)是一种男性最常见的恶性肿瘤之一,同时是导致男性死亡排名第二的恶性肿瘤。据统计,前列腺癌发病率和死亡率逐年升高,每年因PCa死亡人数超过30万,占6.6%。目前,抗雄治疗(androgen deprivation therapy,ADT)是除手术以外PCa常用的治疗方式之一,通过雄激素合成抑制剂(阿比特龙)或者雄激素受体抑制剂(包括比卡鲁胺、氟他胺和恩杂鲁胺等)干扰雄激素/雄激素受体信号通路抑制癌细胞的生长来达到治疗目的。ADT治疗在癌症早期较为显著,但是易产生耐药性,通常3~5年治疗后最终进展成为去势抵抗前列腺癌(CRPC),患者的5年生存率仅有25.4%。目前,FDA还没有批准任何一个有效药物用于治疗CRPC前列腺癌,且已批准的前列腺癌药物对CRPC前列腺癌疗效不佳,只能延长患者的生命几个月。因此深入研究PCa的新型药物显得十分紧迫和必要。Prostate cancer (PCa) is one of the most common malignant tumors in men and the second leading cause of death in men. According to statistics, the incidence and mortality of prostate cancer are increasing year by year, with more than 300,000 deaths from PCa each year, accounting for 6.6%. At present, anti-androgen therapy (ADT) is one of the commonly used treatments for PCa besides surgery. It inhibits the growth of cancer cells by interfering with androgen/androgen receptor signaling pathways through androgen synthesis inhibitors (abiraterone) or androgen receptor inhibitors (including bicalutamide, flutamide and enzalutamide, etc.). ADT treatment is more effective in the early stages of cancer, but it is easy to develop drug resistance. Usually, after 3 to 5 years of treatment, it eventually progresses to castration-resistant prostate cancer (CRPC), and the 5-year survival rate of patients is only 25.4%. At present, the FDA has not approved any effective drug for the treatment of CRPC prostate cancer, and the approved prostate cancer drugs are not effective for CRPC prostate cancer and can only prolong the patient's life for a few months. Therefore, in-depth research on new drugs for PCa is very urgent and necessary.
网站:website:
https://wenku.baidu.com/view/8349065a940590c69ec3d5bbfd0a79563d1ed41d.html记录了多肽类DNA甲基化转移酶抑制剂-DNA甲基化抑制剂,该抑制剂公开了5-氮胞苷、PEP515、牛乳铁素、HDAC环肽抑制剂等。https://wenku.baidu.com/view/8349065a940590c69ec3d5bbfd0a79563d1ed41d.html records polypeptide DNA methyltransferase inhibitors-DNA methylation inhibitors, which disclose 5-azacytidine, PEP515, bovine lactoferrin, HDAC cyclic peptide inhibitors, etc.
可见,多肽作为甲基化抑制剂广大研究单位已经开始研究。It can be seen that a large number of research units have begun to study peptides as methylation inhibitors.
适用于甲基化抑制作用的多肽并不仅仅限于以上。The polypeptides suitable for methylation inhibition are not limited to the above.
所以,本案解决的技术问题是:如何开发出新的针对甲基化酶活性以及m6A修饰具有抑制作用的多肽。Therefore, the technical problem solved in this case is: how to develop new peptides that have inhibitory effects on methylase activity and m6A modification.
发明内容Summary of the invention
本发明的目的在于提供一种多肽,该多肽可选择的形态有多种,其具有较为明显的RNA甲基化、METTL3表达抑制作用。The object of the present invention is to provide a polypeptide having a variety of selectable forms and having a relatively obvious RNA methylation and METTL3 expression inhibitory effect.
同时,本发明还公开了该多肽的制备方法。Meanwhile, the invention also discloses a preparation method of the polypeptide.
本发明不作特殊说明的情况下:mM代表毫摩尔/升,μM代表微摩尔/升,nM代表纳摩尔/升;Unless otherwise specified in the present invention: mM represents millimole/liter, μM represents micromole/liter, and nM represents nanomole/liter;
为实现上述目的,本发明提供如下技术方案:一种多肽,其具有:To achieve the above object, the present invention provides the following technical solution: a polypeptide having:
(I)、如SEQ ID No.1所示的氨基酸序列;(I), the amino acid sequence shown in SEQ ID No.1;
SEQ ID No.1的序列为:ELGRECLNLW;The sequence of SEQ ID No. 1 is: ELGRECLNLW;
SEQ ID No.4的序列为:QLQRIIRTGRTGHWLNHG;The sequence of SEQ ID No. 4 is: QLQRIIRTGRTGHWLNHG;
SEQ ID No.5:FGRPHNVQSEQ ID No.5:FGRPHNVQ
上述SEQ ID No.4&5多肽序列为可以抑制METTL3的其余两个多肽筛选序列。The above-mentioned SEQ ID No. 4 & 5 polypeptide sequences are the remaining two polypeptide screening sequences that can inhibit METTL3.
或or
(II)、如(I)所述的氨基酸序列经取代、缺失或添加一个或多个氨基酸获得的氨基酸序列,且与(I)所述的氨基酸序列功能相同的氨基酸序列;(II) an amino acid sequence obtained by substituting, deleting or adding one or more amino acids to the amino acid sequence described in (I), and having the same function as the amino acid sequence described in (I);
(III)、与如(I)或(II)所述的氨基酸序列具有80%以上相似性的氨基酸序列;(III) an amino acid sequence having more than 80% similarity to the amino acid sequence described in (I) or (II);
如:SEQ ID No.6:GRAMELGRECLNLWGYER;For example: SEQ ID No.6: GRAMELGRECLNLWGYER;
该序列为ELGRECLNLW各向前后延伸4个氨基酸;The sequence is ELGRECLNLW, each extending 4 amino acids forward and backward;
还比如SEQ ID No.2:RCMELGRECLNLW;For example, SEQ ID No. 2: RCMELGRECLNLW;
将该序列SEQ ID No.7的A氨基酸突变为C;The amino acid A in the sequence SEQ ID No.7 is mutated to C;
还比如SEQ ID No.7:RAM ELGRECLNLW;For example, SEQ ID No. 7: RAM ELGRECLNLW;
该序列为ELGRECLNLW向前延伸3个氨基酸;与M3肽同为METTL3蛋白截断肽,具有M3肽相似的功能,该部分为目标多肽药物的功能区域,能够与METTL3和METTL14复合物蛋白结合并发挥作用;The sequence is ELGRECLNLW extended forward by 3 amino acids; it is a truncated peptide of the METTL3 protein like the M3 peptide, and has similar functions to the M3 peptide. This part is the functional region of the target peptide drug, which can bind to the METTL3 and METTL14 complex proteins and exert its effect;
当其在应用中,可与多种穿膜肽结构,如R9;得到R9-MPF13,其氨基酸序列为:SEQID No.8:RRRRRRRRRRAMELGRECLNLW;When it is used, it can be combined with various membrane-penetrating peptide structures, such as R9, to obtain R9-MPF13, whose amino acid sequence is: SEQ ID No. 8: RRRRRRRRRRAMELGRECLNLW;
还可以在R9-MPF13的基础上进一步改造,通过替换功能区域某几个氨基酸而得到。其中增强突变集中在氨基酸序列的第11,12,18位,如多肽R9-RKF,R9-RKY,R9-RKM,R9-RKL,R9-RRL,R9-RKWL,该类突变可增强多肽的抗增殖效果;弱化突变集中在氨基酸序列的第14,22位,如多肽R9-RA,R9-RE,该类突变可弱化多肽的抗增殖效果。多肽R9-PSRKWL是在R9-RKWL的基础上把氨基酸序列的第13及20位氨基酸突变为半胱氨酸,为订书肽前体。R9-SRKWL为R9-PSRKWL在多肽的第13个和第20个半胱氨酸上通过4,4-双(溴甲基)联苯连接进行订书,得到的订书肽。It can also be further modified on the basis of R9-MPF13 by replacing some amino acids in the functional region. Among them, the enhancing mutations are concentrated at the 11th, 12th, and 18th positions of the amino acid sequence, such as the polypeptides R9-RKF, R9-RKY, R9-RKM, R9-RKL, R9-RRL, and R9-RKWL. This type of mutation can enhance the anti-proliferative effect of the polypeptide; the weakening mutations are concentrated at the 14th and 22nd positions of the amino acid sequence, such as the polypeptides R9-RA and R9-RE. This type of mutation can weaken the anti-proliferative effect of the polypeptide. The polypeptide R9-PSRKWL is a stapled peptide precursor obtained by mutating the 13th and 20th amino acids of the amino acid sequence to cysteine on the basis of R9-RKWL. R9-SRKWL is a stapled peptide obtained by stapling R9-PSRKWL on the 13th and 20th cysteines of the polypeptide through 4,4-bis(bromomethyl)biphenyl connection.
通过下表1列出各多肽序列:The polypeptide sequences are listed in Table 1 below:
表1序列表Table 1 Sequence Listing
(注:多肽从左到右为N-C端)(Note: The peptide is N-C terminus from left to right)
或(Ⅳ)、将(I)、(II)或(III)所示的多肽与穿膜肽结合得到的穿膜多肽;或(Ⅴ)、对(I)、(II)或(Ⅳ)所示的多肽进行订书,得到的订书肽。or (IV), a cell-penetrating polypeptide obtained by combining the polypeptide shown in (I), (II) or (III) with a cell-penetrating peptide; or (V), a stapled peptide obtained by stapling the polypeptide shown in (I), (II) or (IV).
SEQ ID No.1所示序列至少具有如下变形:The sequence shown in SEQ ID No.1 has at least the following variations:
1.能够与自组装多肽结合,如:NapFFKY和GYYF、KLVFFAE(淀粉样蛋白Aβ中的核心序列),开发新型的多肽药物。1. Able to combine with self-assembling peptides, such as NapFFKY and GYYF, KLVFFAE (core sequence in amyloid protein Aβ), to develop new peptide drugs.
2.如SEQ ID No.1、SEQ ID No.4、SEQ ID No.5任一所示的氨基酸序列的多肽进行订书得到的订书肽,或如SEQ ID No.1所示的氨基酸序列中的至少一个氨基酸替换成为可反应侧链非天然氨基酸后进行订书得到的订书肽。2. A stapled peptide obtained by stapling a polypeptide having an amino acid sequence as shown in any one of SEQ ID No.1, SEQ ID No.4, and SEQ ID No.5, or a stapled peptide obtained by stapling a polypeptide having an amino acid sequence as shown in SEQ ID No.1 in which at least one amino acid is replaced with a non-natural amino acid having a reactive side chain.
针对SEQ ID No.1来说,通过其他连接分子对序列进行任何形式的订书肽构建,如:通过第1位的E和第5位E、以及第8位的N,以及R和E、N替换成为可反应侧链非天然氨基酸。For SEQ ID No. 1, any form of stapled peptide construction can be performed on the sequence through other linking molecules, such as: replacing E at position 1 and E at position 5, N at position 8, and R, E, and N with reactive side chain non-natural amino acids.
3.添加或替换成非天然氨基酸,如:将氨基酸由L型换为D型。3. Add or replace with non-natural amino acids, such as changing the amino acid from L type to D type.
4.通过化学修饰对多肽药物进行改性,如:PEG修饰提高药物循环时间;脂肪酸(如:C12或C18)修饰增加稳定性和利用率。4. Modify peptide drugs through chemical modification, such as PEG modification to increase drug circulation time; fatty acid (such as C12 or C18) modification to increase stability and utilization.
5.通过结合药物载体递送该多肽药物,如:脂质体、微球、胶束和水凝胶等材料,制备成新型药物剂型。5. Deliver the polypeptide drug by combining it with a drug carrier, such as liposomes, microspheres, micelles and hydrogels, to prepare a new drug dosage form.
在上述的多肽中,所述穿膜肽为CPPsite 2.0In the above polypeptide, the cell-penetrating peptide is CPPsite 2.0
(https://webs.iiitd.edu.in/raghava/cppsite/stats1.php)所能检索到的穿膜肽,例如几种较为经典的穿膜肽:R9穿膜肽、TAT穿膜肽(GRKKRRQRRRPPQ)、Penetratin穿膜肽(RQIKIWFQNRRMKWKK)MAP(KLALKLALKALKAALKLA)、MelittinGIGAVLKVLTTGLPALISWIKRKRQQ中的一种。(https://webs.iiitd.edu.in/raghava/cppsite/stats1.php) can retrieve the cell-penetrating peptides, such as several classic cell-penetrating peptides: R9 cell-penetrating peptide, TAT cell-penetrating peptide (GRKKRRQRRRPPQ), Penetratin cell-penetrating peptide (RQIKIWFQNRRMKWKK) MAP (KLALKLALKALKAALKLA), MelittinGIGAVLKVLTTGLPALISWIKRKRQQ.
在上述的多肽中,所述多肽具有如SEQ ID No.2所示的氨基酸序列。In the above polypeptide, the polypeptide has an amino acid sequence as shown in SEQ ID No.2.
SEQ ID No.2的序列为:RCMELGRECLNLW;The sequence of SEQ ID No. 2 is: RCMELGRECLNLW;
在上述的多肽中,如SEQ ID No.2所示的氨基酸序列的多肽的第2个和第9个半胱氨酸通过4,4-双(溴甲基)联苯连接进行订书,得到订书肽,命名为RSM3。In the above-mentioned polypeptide, the second and ninth cysteines of the polypeptide with the amino acid sequence shown in SEQ ID No. 2 are stapled by 4,4-bis(bromomethyl)biphenyl linkage to obtain a stapled peptide named RSM3.
在上述的多肽中,所述穿膜多肽具有如SEQ ID No.3所示的氨基酸序列。In the above polypeptide, the membrane-penetrating polypeptide has an amino acid sequence as shown in SEQ ID No.3.
SEQ ID No.3的序列为:RRRRRRRRRCMELGRECLNLW;The sequence of SEQ ID No. 3 is: RRRRRRRRRCMELGRECLNLW;
在上述的多肽中,如SEQ ID No.3所示的氨基酸序列的多肽的第10个和第17个半胱氨酸通过4,4-双(溴甲基)联苯连接构建i+7的订书肽。In the above polypeptide, the 10th and 17th cysteines of the polypeptide with the amino acid sequence shown in SEQ ID No. 3 are connected through 4,4-bis(bromomethyl)biphenyl to construct the i+7 stapled peptide.
同时,本发明还公开了一种如上所述的多肽的制备方法,利用AM树脂,将所需的氨基酸计算称量溶解后放入合成瓶,按照全自动合成仪器的操作进行设置合成,取出AM树脂切割、沉淀后得到多肽,经过纯化及即可。At the same time, the present invention also discloses a method for preparing the polypeptide as described above, using AM resin, calculating, weighing and dissolving the required amino acids and putting them into a synthesis bottle, setting up the synthesis according to the operation of the fully automatic synthesis instrument, taking out the AM resin, cutting and precipitating to obtain the polypeptide, and then purifying it.
与现有技术相比,本发明的有益效果是:Compared with the prior art, the present invention has the following beneficial effects:
本发明所设计的具有抑制RNA甲基化酶METTL3的多肽抑制剂,并且通过结合穿膜肽R9使多肽药物进入到细胞内发挥药效。The polypeptide inhibitor designed by the present invention has the function of inhibiting RNA methyltransferase METTL3, and enables the polypeptide drug to enter cells to exert its efficacy by binding to the cell-penetrating peptide R9.
并且在多肽原有序列上通过合成订书肽增加多肽的结构稳定性、提高多肽药物的活性和药效。In addition, by synthesizing stapled peptides on the original sequence of the polypeptide, the structural stability of the polypeptide is increased, and the activity and efficacy of the polypeptide drug are improved.
该多肽药物能够与METTL3特异性结合,抑制其RNA甲基化转移酶的活性,从而使RNA甲基化水平减少。This peptide drug can specifically bind to METTL3 and inhibit the activity of its RNA methyltransferase, thereby reducing the RNA methylation level.
该多肽能够显著抑制SaoS2(人成骨肉瘤细胞)、HepG2(人肝母细胞瘤细胞)、DU145(人前列腺癌细胞)、HCT116(结直肠癌细胞系)、A375(人恶性黑色素瘤)、Hela(人前宫颈癌细胞)、A549(肺癌人类肺泡基底上皮细胞)、K562(人慢性髓系白血病细胞)、OVCAR-3(卵巢腺癌细胞)的生长和增殖。The polypeptide can significantly inhibit the growth and proliferation of SaoS2 (human osteosarcoma cells), HepG2 (human hepatoblastoma cells), DU145 (human prostate cancer cells), HCT116 (colorectal cancer cell line), A375 (human malignant melanoma), Hela (human precervical cancer cells), A549 (lung cancer human alveolar basal epithelial cells), K562 (human chronic myeloid leukemia cells), and OVCAR-3 (ovarian adenocarcinoma cells).
附图说明BRIEF DESCRIPTION OF THE DRAWINGS
图1为本发明实施例1提供的多肽序列和分子结构图;FIG1 is a diagram of the polypeptide sequence and molecular structure provided in Example 1 of the present invention;
图2为本发明实施例2提供的订书肽合成步骤;FIG2 is a diagram showing the steps for synthesizing the stapled peptide provided in Example 2 of the present invention;
图3为本发明实施例3提供的对前列腺癌细胞的RNA甲基化抑制效果图;FIG3 is a diagram showing the RNA methylation inhibition effect on prostate cancer cells provided by Example 3 of the present invention;
图4为本发明实施例4提供的对前列腺癌细胞的METTL3的表达抑制结果图;FIG4 is a graph showing the results of inhibiting the expression of METTL3 in prostate cancer cells provided in Example 4 of the present invention;
图5A为本发明实施例5提供对前列腺癌细胞的生长抑制结果图;FIG5A is a graph showing the growth inhibition results of prostate cancer cells provided by Example 5 of the present invention;
图5B为本发明实施例5提供的抑制前列腺癌细胞生长的效果。FIG. 5B shows the effect of inhibiting the growth of prostate cancer cells provided by Example 5 of the present invention.
图6为本发明实施例6提供对前列腺癌细胞的生长抑制结果图;FIG6 is a graph showing the results of inhibiting the growth of prostate cancer cells provided by Example 6 of the present invention;
图7A为本发明的多肽R9、RM3和RSM3注射到小鼠体内后,血液中白细胞的指标;FIG7A shows the indexes of white blood cells in the blood of mice after the polypeptides R9, RM3 and RSM3 of the present invention were injected into the body;
图7B为本发明的多肽R9、RM3和RSM3注射到小鼠体内后,血液中血小板的指标;FIG7B shows the platelet index in the blood of mice after the polypeptides R9, RM3 and RSM3 of the present invention were injected into the body;
图7C为本发明的多肽R9、RM3和RSM3注射到小鼠体内后,血液中红细胞的指标;FIG7C shows the indexes of red blood cells in the blood of mice after the polypeptides R9, RM3 and RSM3 of the present invention were injected into the body;
图7D为本发明的多肽R9、RM3和RSM3注射到小鼠体内后,血液中血红蛋白的指标;FIG7D is an index of hemoglobin in the blood of mice after the polypeptides R9, RM3 and RSM3 of the present invention were injected into the body;
图7E为本发明的多肽R9、RM3和RSM3注射到肿瘤模型小鼠体内后,小鼠体重改变情况;FIG7E shows the changes in the body weight of tumor model mice after the polypeptides R9, RM3 and RSM3 of the present invention were injected into the mice;
图7F为本发明的多肽R9、RM3和RSM3注射到肿瘤模型小鼠体内后,肿瘤体积改变情况;FIG7F shows the changes in tumor volume after the polypeptides R9, RM3 and RSM3 of the present invention were injected into tumor model mice;
图7G为本发明的多肽R9、RM3和RSM3注射到肿瘤模型小鼠体内后,肿瘤质量改变情况;FIG7G shows the changes in tumor mass after the polypeptides R9, RM3 and RSM3 of the present invention were injected into tumor model mice;
图7H为本发明的多肽R9、RM3和RSM3注射到肿瘤模型小鼠体内后,肿瘤照片的改变情况;FIG7H shows the changes in tumor photos after the polypeptides R9, RM3 and RSM3 of the present invention were injected into tumor model mice;
图8A为本发明的实施例5的多种多肽作用于前列腺癌细胞DU145的存活率数据图,图8A中,横坐标为多肽浓度,横坐标为细胞存活率;FIG8A is a data diagram showing the survival rate of prostate cancer cell DU145 treated with various polypeptides of Example 5 of the present invention. In FIG8A , the horizontal axis represents the polypeptide concentration, and the horizontal axis represents the cell survival rate;
图8B为本发明的实施例5的多种多肽作用于前列腺癌细胞DU145的抑制浓度表,其中纵坐标IC50为半抑制浓度;FIG8B is a table showing the inhibitory concentrations of various polypeptides of Example 5 of the present invention on prostate cancer cells DU145, wherein the vertical coordinate IC50 is the half inhibitory concentration;
图9A为本发明的实施例5的多肽R9-RKL作用于多种癌细胞的存活率数据图,图9A中,横坐标为多肽浓度,横坐标为细胞存活率;FIG9A is a data diagram showing the survival rate of various cancer cells treated with the polypeptide R9-RKL of Example 5 of the present invention. In FIG9A , the horizontal axis represents the polypeptide concentration, and the horizontal axis represents the cell survival rate;
图9B为本发明的实施例5的多肽R9-RKL作用于多种癌细胞的抑制浓度表,其中纵坐标IC50为半抑制浓度。FIG9B is a table showing the inhibitory concentrations of the polypeptide R9-RKL of Example 5 of the present invention on various cancer cells, wherein the vertical axis IC50 is the half inhibitory concentration.
具体实施方式DETAILED DESCRIPTION
下面将结合本发明实施例中的附图,对本发明实施例中的技术方案进行清楚、完整地描述,显然,所描述的实施例仅仅是本发明一部分实施例,而不是全部的实施例。基于本发明中的实施例,本领域普通技术人员在没有做出创造性劳动前提下所获得的所有其他实施例,都属于本发明保护的范围。The following will be combined with the drawings in the embodiments of the present invention to clearly and completely describe the technical solutions in the embodiments of the present invention. Obviously, the described embodiments are only part of the embodiments of the present invention, not all of the embodiments. Based on the embodiments of the present invention, all other embodiments obtained by ordinary technicians in this field without creative work are within the scope of protection of the present invention.
实施例1Example 1
1.1通过固相合成法合成多肽药物分子,氨基酸序列为分别为M3-11.1 The peptide drug molecules were synthesized by solid phase synthesis, and the amino acid sequences were M3-1
(RCMELGRECLNLW)和RM3(RRRRRRRRRCMELGRECLNLW)(参考图1)。(RCMELGRECLNLW) and RM3(RRRRRRRRRCMELGRECLNLW) (refer to Figure 1).
利用AM树脂进行,将所需的氨基酸计算称量溶解后放入合成瓶,按照全自动合成仪器的操作进行设置合成,取出树脂切割、沉淀后得到多肽粗品。通过高效液相色谱仪进行纯化及冻干即可得到相应的多肽药物冻干粉。Using AM resin, the required amino acids are weighed and dissolved, and then placed in a synthesis bottle. Synthesis is set up according to the operation of the fully automatic synthesis instrument. The crude peptide is obtained after the resin is removed, cut, and precipitated. The corresponding peptide drug lyophilized powder can be obtained by purification and freeze-drying using a high-performance liquid chromatography.
M3的重要性在于:M3是核心起效多肽,M3在体外能够与METTL3和METTL14的蛋白结合,但是没有穿膜肽该序列无法进入细胞发挥作用,因此RM3在实际治疗过程中更加具有应用价值。The importance of M3 lies in that: M3 is the core active polypeptide. M3 can bind to the proteins of METTL3 and METTL14 in vitro, but without the membrane-penetrating peptide, this sequence cannot enter the cell to exert its effect. Therefore, RM3 has more application value in the actual treatment process.
1.2通过固相合成法合成多肽药物分子,多肽药物分子为R9-MPF13(R9-Mettl3'speptide fragment)及其突变衍生物多肽,衍生物多肽为R9-MPF13通过替换某几个氨基酸而得到的产物,氨基酸序列参考表1和下表2;表2通过加粗和斜线标注了氨基酸突变、替换的方式。1.2 The peptide drug molecules were synthesized by solid phase synthesis. The peptide drug molecules were R9-MPF13 (R9-Mettl3'speptide fragment) and its mutant derivative peptides. The derivative peptides were products obtained by replacing certain amino acids in R9-MPF13. The amino acid sequences were referenced in Table 1 and Table 2 below. Table 2 marked the amino acid mutation and replacement methods by bold and diagonal lines.
利用AM树脂进行,将所需的氨基酸计算称量溶解后放入合成瓶,按照全自动合成仪器的操作进行设置合成,取出树脂切割、沉淀后得到多肽粗品。通过高效液相色谱仪进行纯化及冻干即可得到相应的多肽药物冻干粉。Using AM resin, the required amino acids are weighed and dissolved, and then placed in a synthesis bottle. Synthesis is set up according to the operation of the fully automatic synthesis instrument. The crude peptide is obtained after the resin is removed, cut, and precipitated. The corresponding peptide drug lyophilized powder can be obtained by purification and freeze-drying using a high-performance liquid chromatography.
目标氨基酸序列为两部分组成,第一部分为穿膜肽R9序列,为多肽药物提供穿膜效果,确保功能序列能进入细胞发挥作用;第二部分为功能肽MPF13及其衍生物多肽,该部分为目标多肽药物的功能区域,能够与METTL3和METTL14复合物蛋白结合并发挥作用。The target amino acid sequence consists of two parts. The first part is the membrane-penetrating peptide R9 sequence, which provides a membrane-penetrating effect for the polypeptide drug and ensures that the functional sequence can enter the cell to exert its effect. The second part is the functional peptide MPF13 and its derivative polypeptides, which are the functional regions of the target polypeptide drug and can bind to and exert their effects on the METTL3 and METTL14 complex proteins.
1.3通过固相合成法合成多肽药物分子,R9-RKL(R9-RKMELGRELLNLW),利用AM树脂进行,将所需的氨基酸计算称量溶解后放入合成瓶,按照全自动合成仪器的操作进行设置合成,取出树脂切割、沉淀后得到多肽粗品。通过高效液相色谱仪进行纯化及冻干即可得到相应的多肽药物冻干粉。1.3 The peptide drug molecule R9-RKL (R9-RKMELGRELLNLW) was synthesized by solid phase synthesis using AM resin. The required amino acids were weighed and dissolved and placed in a synthesis bottle. The synthesis was set up according to the operation of the fully automatic synthesis instrument. The crude peptide was obtained after the resin was removed, cut, and precipitated. The corresponding peptide drug lyophilized powder was obtained by purification and freeze-drying using a high performance liquid chromatography.
表2序列表Table 2 Sequence Listing
(注:多肽从左到右为N-C端)。(Note: The polypeptide is N-C terminus from left to right).
实施例2Example 2
订书肽SM3和RSM3的合成:Synthesis of stapled peptides SM3 and RSM3:
参考图2,称取纯化后的RM3和M3多肽冻干粉分别进行反应,用比例为1:1的乙腈/30mM碳酸氢铵混合溶液溶解多肽,投入多肽的终浓度为1mM,再加入1.5mM bhp溶液,室温搅拌反应3h。将合成的多肽产物进行HPLC分析和质谱检测。最后通过高效液相色谱纯化及冻干后得到订书肽粉末。Referring to Figure 2, the purified RM3 and M3 peptide freeze-dried powders were weighed and reacted separately, and the peptides were dissolved in a 1:1 acetonitrile/30mM ammonium bicarbonate mixed solution, and the final concentration of the peptides was 1mM. Then 1.5mM bhp solution was added and stirred at room temperature for 3h. The synthesized peptide products were subjected to HPLC analysis and mass spectrometry detection. Finally, the stapled peptide powder was obtained after purification by high performance liquid chromatography and freeze drying.
RM3和M3的订书位置如图2,为第10位的半胱氨酸(Cys)和17位的半胱氨基酸进行订书。The stapled positions of RM3 and M3 are shown in Figure 2 , where cysteine (Cys) at position 10 and cysteine at position 17 are stapled.
实施例3Example 3
对前列腺癌细胞的RNA甲基化的抑制。Inhibition of RNA methylation in prostate cancer cells.
癌细胞RNA甲基化的测定:将多肽R9、RM3、RSM3用灭菌纯水配置成50mM的母液,对其进行梯度稀释后,加入到提前铺好PC3和DU145细胞的6孔板中,每孔2mL,每个浓度三个复孔,12小时后用提取细胞的总RNA,将RNA分别加入到提前准备好的NC膜上烘干固定,然后一次孵育RNA甲基化的一抗、二抗,最后用超敏ECL化学发光试剂进行显色曝光,参考图3,结果说明发现RM3和RSM3能够显著抑制RNA的甲基化;Determination of RNA methylation in cancer cells: Peptides R9, RM3, and RSM3 were prepared into 50mM stock solutions with sterile pure water, and then added to 6-well plates with PC3 and DU145 cells pre-plated with 2mL per well, with three replicates for each concentration. After 12 hours, total RNA of the cells was extracted, and the RNA was added to the NC membrane prepared in advance for drying and fixation, and then incubated with primary and secondary antibodies for RNA methylation at one time, and finally exposed with ultra-sensitive ECL chemiluminescent reagent. Referring to Figure 3, the results show that RM3 and RSM3 can significantly inhibit RNA methylation;
参考图3,结果说明的是:RSM3由于经过订书,因此不管从稳定性还是甲基化抑制效果方面来说,其都会更好。Referring to FIG3 , the results show that RSM3 is better in terms of stability and methylation inhibition effect because it has been stapled.
图3中,MB为亚甲基蓝染色,m6A为甲基化含量。500ng和3000ng实验中RNA的上样量。In Figure 3, MB is methylene blue staining, and m 6 A is methylation content. The amount of RNA loaded in the 500ng and 3000ng experiments.
实施例4Example 4
对前列腺癌细胞METTL3表达具有抑制作用。It has an inhibitory effect on the expression of METTL3 in prostate cancer cells.
参考图4中,称取一定质量多肽,溶解成为50mM母液,将多肽R9、RM3、RSM3用灭菌纯水配置成50mM的母液,对其进行梯度稀释后,加入到提前铺好PC3和DU145细胞的6孔板中,多肽终浓度为20uM,每孔2mL,每个浓度三个复孔。处理24小时后裂解细胞提取细胞蛋白,将蛋白电泳分离后转移到PVDF膜上,分别孵育METTL3的一抗、二抗,最后曝光成像。Referring to Figure 4, a certain amount of peptide was weighed and dissolved into a 50mM stock solution. Peptides R9, RM3, and RSM3 were prepared into a 50mM stock solution with sterile pure water. After gradient dilution, they were added to a 6-well plate with PC3 and DU145 cells pre-plated. The final concentration of the peptide was 20uM, 2mL per well, and three replicates were used for each concentration. After 24 hours of treatment, the cells were lysed to extract cell proteins, and the proteins were separated by electrophoresis and transferred to a PVDF membrane, incubated with the primary antibody and secondary antibody of METTL3, and finally exposed for imaging.
参考图4,结果发现,RM3和RSM3均能够抑制METTL3的表达。Referring to FIG. 4 , the results showed that both RM3 and RSM3 were able to inhibit the expression of METTL3.
图4中,GAPDH为免疫印迹实验(WB实验)中的内参。In FIG. 4 , GAPDH is an internal reference in the immunoblotting experiment (WB experiment).
实施例5Example 5
对前列腺癌细胞PC3和DU145增殖具有抑制作用。It has an inhibitory effect on the proliferation of prostate cancer cells PC3 and DU145.
5.1参考图5A,将多肽R9、RM3和RSM3用灭菌纯水配置成50mM的母液,用基础培养基对其进行梯度稀释后,将稀释好的多肽溶液加入到提前铺好PC3和DU145细胞的96孔板中,每孔100μL,每个浓度三个重复。处理24h后用CCK-8试剂盒测定在450nm处的OD值,计算并分析结果。5.1 Referring to Figure 5A, peptides R9, RM3 and RSM3 were prepared into 50mM stock solutions with sterile pure water, and then gradiently diluted with basal culture medium. The diluted peptide solutions were added to 96-well plates pre-plated with PC3 and DU145 cells, 100μL per well, and three replicates for each concentration. After 24h of treatment, the OD value at 450nm was measured with a CCK-8 kit, and the results were calculated and analyzed.
图5B克隆形成实验,将生长好的PC3和DU145细胞加入0.25%的胰酶消化且进行细胞计数,在六孔板的每孔中加入300个细胞,再加入2ml的完全培养继续培养24h。分别在每个孔中加入M3、R9、RM3、RSM3继续培养7天后,倒掉培基,洗涤后用结晶紫染色后进行显微拍照,计算细胞数目。Figure 5B: In the clone formation experiment, the grown PC3 and DU145 cells were digested with 0.25% trypsin and the cells were counted. 300 cells were added to each well of the six-well plate, and 2 ml of complete culture was added to continue culturing for 24 hours. M3, R9, RM3, and RSM3 were added to each well and continued to be cultured for 7 days. The medium was discarded, and the cells were washed, stained with crystal violet, and then microscopically photographed to count the number of cells.
结果表明:在RSM3和RM3具有较好的抑制前列腺癌细胞生长的效果,且RSM3的抑制效果优于RM3。The results showed that RSM3 and RM3 had a good effect in inhibiting the growth of prostate cancer cells, and the inhibitory effect of RSM3 was better than that of RM3.
5.2将表1中的部分多肽用灭菌纯水配置成10mM的母液,用基础培养基对其进行梯度稀释后,将稀释好的多肽溶液加入到提前铺好DU145细胞的96孔板中,每孔100μL,每个浓度四个重复。处理48h后用改良型MTT试剂盒处理并测定在580nm处的OD值,计算并分析结果。5.2 Some of the peptides in Table 1 were prepared into 10mM stock solutions with sterile pure water, and then gradiently diluted with basal culture medium. The diluted peptide solutions were added to 96-well plates pre-plated with DU145 cells, 100μL per well, and four replicates for each concentration. After 48h of treatment, the modified MTT kit was used to treat and measure the OD value at 580nm, and the results were calculated and analyzed.
参考图8A及图8B,结果表明,各多肽均对前列腺癌细胞DU145具有较明显的抑制增殖作用;其中尤其以表2中的R9-RKL,R9-RKWL,R9-PSRKWL这三条突变的多肽的抑制效果较好,表明该类型突变增强了功能肽的作用,显示多肽序列12位氨基酸A突变为K,18位氨基酸C突变为L为较优突变。Referring to Figures 8A and 8B, the results show that all polypeptides have a significant inhibitory effect on the proliferation of prostate cancer cells DU145; among them, the three mutated polypeptides R9-RKL, R9-RKWL, and R9-PSRKWL in Table 2 have a better inhibitory effect, indicating that this type of mutation enhances the effect of the functional peptide, showing that the mutation of amino acid A at position 12 to K and the mutation of amino acid C at position 18 to L in the polypeptide sequence are better mutations.
图8A为本发明的实施例5的多种多肽作用于前列腺癌细胞DU145的存活率数据图,图8A中,横坐标为多肽浓度,横坐标为细胞存活率FIG8A is a data diagram showing the survival rate of various polypeptides in Example 5 of the present invention acting on prostate cancer cell DU145. In FIG8A , the horizontal axis is the polypeptide concentration and the horizontal axis is the cell survival rate.
图8B为本发明的实施例5的多种多肽作用于前列腺癌细胞DU145的IC50(半抑制浓度,图8B中,横坐标为多肽名称,纵坐标为IC50。FIG8B shows the IC50 (half inhibitory concentration) of various polypeptides of Example 5 of the present invention on prostate cancer cell DU145. In FIG8B , the abscissa is the polypeptide name, and the ordinate is IC50 .
5.3参考图9A及图9B;利用效果较好的R9-RKL验证对不同癌细胞系的抑制增殖作用;5.3 Referring to FIG. 9A and FIG. 9B , the inhibitory effect of R9-RKL on different cancer cell lines was verified using the better-performing R9-RKL;
验证的细胞对象为:SaoS2(人成骨肉瘤细胞)、HepG2(人肝母细胞瘤细胞)、DU145(人前列腺癌细胞)、HCT116(结直肠癌细胞系)、A375(人恶性黑色素瘤)、Hela(人前宫颈癌细胞)、A549(肺癌人类肺泡基底上皮细胞)、K562(人慢性髓系白血病细胞)、OVCAR-3(卵巢腺癌细胞)。The validated cell objects are: SaoS2 (human osteosarcoma cells), HepG2 (human hepatoblastoma cells), DU145 (human prostate cancer cells), HCT116 (colorectal cancer cell line), A375 (human malignant melanoma), Hela (human precervical cancer cells), A549 (lung cancer human alveolar basal epithelial cells), K562 (human chronic myeloid leukemia cells), OVCAR-3 (ovarian adenocarcinoma cells).
实验方法为:将多肽用灭菌纯水配置成10mM的母液,用基础培养基对其进行梯度稀释后,将稀释好的多肽溶液加入到提前铺好各类细胞的96孔板中,每孔100μL,每个浓度四个重复。处理48h后用改良型MTT试剂盒处理并测定在580nm处的OD值,计算并分析结果。The experimental method is: the peptide is prepared into a 10mM stock solution with sterile pure water, and after gradient dilution with basal culture medium, the diluted peptide solution is added to a 96-well plate with various cells pre-plated, 100μL per well, and four replicates for each concentration. After 48h of treatment, the modified MTT kit is used to treat and measure the OD value at 580nm, and the results are calculated and analyzed.
图9A为本发明的实施例5的多肽R9-RKL作用于多种细胞的存活率数据图,图9A中,横坐标为多肽浓度,纵坐标为细胞存活率;FIG9A is a data diagram showing the survival rate of various cells acted upon by the polypeptide R9-RKL of Example 5 of the present invention. In FIG9A , the abscissa is the polypeptide concentration, and the ordinate is the cell survival rate;
图9B为本发明的实施例5的多肽R9-RKL作用于多种细胞的抑制浓度表,其中纵坐标IC50为半抑制浓度。FIG9B is a table showing the inhibitory concentrations of the polypeptide R9-RKL of Example 5 of the present invention on various cells, wherein the vertical coordinate IC50 is the half inhibitory concentration.
通过图9A及图9B可见,R9-RKL针对SaoS2、HepG2、DU145、HCT116、A375、Hela、A549、K562、OVCAR-3等多种癌细胞系均有较好的生长抑制作用,其IC50均低于11μM。As can be seen from Figures 9A and 9B, R9-RKL has a good growth inhibitory effect on various cancer cell lines such as SaoS2, HepG2, DU145, HCT116, A375, Hela, A549, K562, and OVCAR-3, and its IC50 is lower than 11 μM.
实施例6Example 6
其余两条筛选的序列NO.4&5M1和M2连接上穿膜肽R9后,对前列腺癌细胞PC3和DU145具有一定的生长抑制作用。The other two screened sequences NO.4&5M1 and M2, after being connected with the cell-penetrating peptide R9, had a certain growth inhibitory effect on prostate cancer cells PC3 and DU145.
参考图6,将上述两条多肽用灭菌纯水配置成50mM的母液,用基础培养基对其进行梯度稀释后,将稀释好的多肽溶液加入到提前铺好PC3和DU145细胞的96孔板中,每孔100μL,每个浓度三个复孔。处理24h后用CCK-8在450nm处测定OD值,得出的数值经过计算。Referring to Figure 6, the above two polypeptides were prepared into a 50mM stock solution with sterile pure water, and after gradient dilution with basal culture medium, the diluted polypeptide solution was added to a 96-well plate pre-plated with PC3 and DU145 cells, 100 μL per well, and three replicates for each concentration. After 24 hours of treatment, the OD value was measured at 450nm using CCK-8, and the obtained value was calculated.
图6中,横坐标为多肽浓度;纵坐标为细胞存活率。In FIG6 , the horizontal axis represents the polypeptide concentration, and the vertical axis represents the cell survival rate.
结果表明在M1和M2在结合穿膜肽后,具有一定的抑制细胞生长的药效。但是药效有待进一步优化,具有一定的研究应用价值。The results showed that M1 and M2 had a certain effect of inhibiting cell growth after combining with the cell-penetrating peptide. However, the efficacy needs to be further optimized and has certain research and application value.
实施例7Example 7
参考图7,(A)体内药物安全性评估:将饲养7周C57BL/C小鼠一次性腹腔注射50mg/kg的剂量(R9、RM3、RSM3),24h后,牺牲小鼠,取血液测量白细胞、血小板、红细胞、血红蛋白等指标,分析药物对正常动物的毒性。Referring to Figure 7, (A) In vivo drug safety assessment: C57BL/C mice raised for 7 weeks were intraperitoneally injected with a dose of 50 mg/kg (R9, RM3, RSM3) once. After 24 hours, the mice were sacrificed and blood was taken to measure indicators such as white blood cells, platelets, red blood cells, and hemoglobin, and the toxicity of the drugs to normal animals was analyzed.
(B)体内抗肿瘤实验:我们将选用前列腺荷瘤小鼠模型,构建动物模型的具体步骤如下:利用METTL3高表达的前列腺癌细胞PC3,培养至对数生长期,消化收集并配置成浓度为1×107细胞/mL的细胞悬液。取4-6周龄雌雄BALB/c裸鼠,于后肢背部处注射细胞悬液100μL,建立肿瘤模型。待小鼠肿瘤直径长到大约0.5cm后,按照实验需求进行随机分组:PBS,R9、RM3、RSM3等。瘤周给药,每两天一次,连续给药两周。给药后连续六周观察小鼠的生长情况,测量小鼠肿瘤体积变化及体重变化,监测小鼠的存活状态,分析抑瘤率和存活率。(B) In vivo anti-tumor experiment: We will use a prostate tumor-bearing mouse model. The specific steps to construct the animal model are as follows: PC3 prostate cancer cells with high expression of METTL3 are cultured to the logarithmic growth phase, digested, collected and prepared into a cell suspension with a concentration of 1×10 7 cells/mL. Take 4-6 week-old male and female BALB/c nude mice, inject 100μL of cell suspension into the back of the hind limbs to establish a tumor model. After the diameter of the mouse tumor grows to about 0.5cm, it is randomly divided into groups according to the experimental requirements: PBS, R9, RM3, RSM3, etc. Peritumoral administration, once every two days, for two consecutive weeks. After administration, the growth of the mice was observed for six consecutive weeks, the changes in tumor volume and weight of the mice were measured, the survival status of the mice was monitored, and the tumor inhibition rate and survival rate were analyzed.
图7中,图7A~D为血液指标数据In FIG. 7 , FIG. 7A to FIG. 7D are blood index data
图7E~H为肿瘤模型小鼠的体重,肿瘤体积变化以及肿瘤质量和图片。Figure 7E-H shows the body weight, tumor volume changes, tumor mass and pictures of tumor model mice.
通过图7A~H的结果可见:From the results of Figures 7A to 7H, we can see that:
参考图7A,对血液中的白细胞(WBC),多肽抑制剂RM3和RSM3对该指标均有所略微升高,但是处于正常范围之内,与穿膜肽R9和对照组PBS对比;Referring to FIG7A , for white blood cells (WBC) in the blood, the peptide inhibitors RM3 and RSM3 both slightly increased the index, but were within the normal range, compared with the cell-penetrating peptide R9 and the control group PBS;
参考图7B,在血小板(PLT)方面,多肽抑制剂RM3和RSM3对该指标均没有明显影响,与穿膜肽R9和对照组PBS对比;Referring to Figure 7B , in terms of platelets (PLT), the peptide inhibitors RM3 and RSM3 had no significant effect on this index, compared with the cell-penetrating peptide R9 and the control group PBS;
参考图7C,在红细胞(RBC)方面,多肽抑制剂RM3和RSM3对该指标均没有明显影响,与穿膜肽R9和对照组PBS对比;Referring to Figure 7C , in terms of red blood cells (RBC), the peptide inhibitors RM3 and RSM3 had no significant effect on this index, compared with the cell-penetrating peptide R9 and the control group PBS;
参考图7D,在血红蛋白(HMGB)方面,多肽抑制剂RM3和RSM3对该指标有一些降低作用,但均处于正常范围之内;Referring to Figure 7D , in terms of hemoglobin (HMGB), the peptide inhibitors RM3 and RSM3 had some reducing effects on this index, but both were within the normal range;
参考图7E,在体重改变方面,PBS组、穿膜肽R9以及多肽抑制剂组RM3、RSM3对小鼠的体重没有明显的影响,说明这些处理组没有明显的毒副作用;Referring to FIG7E , in terms of body weight changes, the PBS group, the cell-penetrating peptide R9, and the peptide inhibitor groups RM3 and RSM3 had no significant effect on the body weight of mice, indicating that these treatment groups had no obvious toxic side effects;
参考图7F,在肿瘤体积改变方面,肽抑制剂RM3和RSM3能够显著的抑制肿瘤的体积增大,说明该多肽抑制剂能够有效的抑制肿瘤生长;Referring to FIG. 7F , in terms of tumor volume changes, peptide inhibitors RM3 and RSM3 can significantly inhibit the increase in tumor volume, indicating that the peptide inhibitors can effectively inhibit tumor growth;
参考图7G,肿瘤质量用于进一步确定多肽的治疗效果,其中多肽抑制剂RM3、RSM3治疗后的小鼠,肿瘤块的质量明显低于穿膜肽R9组和PBS处理组。该结果进一步说明RM3、RSM3具有较好的治疗效果,能够抑制肿瘤生长;Referring to Figure 7G, the tumor mass was used to further determine the therapeutic effect of the peptide. The mass of the tumor mass of mice treated with peptide inhibitors RM3 and RSM3 was significantly lower than that of the cell-penetrating peptide R9 group and the PBS treatment group. This result further shows that RM3 and RSM3 have good therapeutic effects and can inhibit tumor growth;
参考图7H,肿瘤的体积改变可印证图7F和7G的结果;Referring to Figure 7H , the changes in tumor volume can confirm the results of Figures 7F and 7G ;
通过以上分析可见,METTL3多肽抑制剂在具有抑制前列腺肿瘤生长的作用,其中订书肽抑制剂RSM3效用更为明显。The above analysis shows that METTL3 peptide inhibitors have the effect of inhibiting the growth of prostate tumors, among which the stapled peptide inhibitor RSM3 is more effective.
对于本领域技术人员而言,显然本发明不限于上述示范性实施例的细节,而且在不背离本发明的精神或基本特征的情况下,能够以其他的具体形式实现本发明。因此,无论从哪一点来看,均应将实施例看作是示范性的,而且是非限制性的,本发明的范围由所附权利要求而不是上述说明限定,因此旨在将落在权利要求的等同要件的含义和范围内的所有变化囊括在本发明内。不应将权利要求中的任何附图标记视为限制所涉及的权利要求。It will be apparent to those skilled in the art that the invention is not limited to the details of the exemplary embodiments described above and that the invention can be implemented in other specific forms without departing from the spirit or essential features of the invention. Therefore, the embodiments should be considered exemplary and non-limiting in all respects, and the scope of the invention is defined by the appended claims rather than the foregoing description, and it is intended that all variations within the meaning and scope of the equivalent elements of the claims be included in the invention. Any reference numeral in a claim should not be considered as limiting the claim to which it relates.
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