CN116949168A - Application of CD73 in the diagnosis of Parkinson's disease - Google Patents
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Abstract
本发明公开了CD73在帕金森病诊断中的应用,本发明通过研究帕金森病患者与健康对照血清中CD73的水平,发现CD73在帕金森病患者血清中含量较健康对照人群显著下降,且PD患者血清CD73水平与H&Y分期和UPDRS‑Ⅲ评分呈负相关,为帕金森病患者的有效诊断提供的新的方向,在临床上具有广阔的应用前景。
The present invention discloses the application of CD73 in the diagnosis of Parkinson's disease. By studying the levels of CD73 in the serum of Parkinson's disease patients and healthy controls, the present invention finds that the content of CD73 in the serum of Parkinson's disease patients is significantly lower than that of healthy controls, and PD The patient's serum CD73 level is negatively correlated with H&Y stage and UPDRS-III score, which provides a new direction for the effective diagnosis of Parkinson's disease patients and has broad clinical application prospects.
Description
技术领域Technical field
本发明属于生物医药领域,具体涉及CD73在帕金森病诊断中的应用。The invention belongs to the field of biomedicine, and specifically relates to the application of CD73 in the diagnosis of Parkinson's disease.
背景技术Background technique
帕金森病(Parkinson's disease,PD)是最常见的引起老年人运动障碍的神经退行性疾病,其典型临床核心运动四主征为震颤、强直、少动和运动迟缓、姿势步态不稳。随着病情进展,PD运动症状进行性加重,成为引起PD患者生活质量下降,生活依赖度增高的主要原因。因此筛选与帕金森病相关的标志物,对帕金森病的诊断及后续治疗具有重要意义。Parkinson's disease (PD) is the most common neurodegenerative disease causing movement disorders in the elderly. Its typical clinical core motor symptoms are tremor, rigidity, hypokinesia and bradykinesia, and unstable posture and gait. As the disease progresses, the motor symptoms of PD progressively worsen, becoming the main reason for the decline in the quality of life of PD patients and the increase in life dependence. Therefore, screening markers related to Parkinson's disease is of great significance for the diagnosis and subsequent treatment of Parkinson's disease.
发明内容Contents of the invention
为弥补现有技术的不足,本发明提供了CD73在帕金森病诊断中的应用。In order to make up for the shortcomings of the existing technology, the present invention provides the application of CD73 in the diagnosis of Parkinson's disease.
为实现上述目的,本发明采用如下技术方案:In order to achieve the above objects, the present invention adopts the following technical solutions:
本发明的第一方面提供了检测样本中CD73表达水平的试剂在制备帕金森病诊断、分期的产品中的应用。A first aspect of the present invention provides the use of a reagent for detecting CD73 expression levels in samples in preparing products for diagnosing and staging Parkinson's disease.
进一步,所述试剂选自特异性识别CD73基因的探针、特异性扩增CD73基因的引物或特异性结合CD73基因编码的蛋白的结合剂。Further, the reagent is selected from a probe that specifically recognizes the CD73 gene, a primer that specifically amplifies the CD73 gene, or a binding agent that specifically binds to the protein encoded by the CD73 gene.
进一步,所述引物或探针使用标记物质标记。Further, the primer or probe is labeled with a labeling substance.
进一步,所述标记物质包括荧光物质、放射性同位素或酶。Further, the labeling substance includes fluorescent substance, radioactive isotope or enzyme.
进一步,所述产品包括芯片、试纸、试剂盒或核酸膜条。Further, the products include chips, test strips, test kits or nucleic acid film strips.
进一步,所述芯片包括基因芯片、蛋白芯片。Further, the chip includes a gene chip and a protein chip.
进一步,所述基因芯片包括用于检测CD73基因转录水平的针对CD73基因的探针,所述蛋白芯片包括CD73蛋白的特异性结合剂。Further, the gene chip includes a probe targeting the CD73 gene for detecting the CD73 gene transcription level, and the protein chip includes a specific binding agent for the CD73 protein.
进一步,所述试剂盒包括基因检测试剂盒、蛋白检测试剂盒。Further, the kits include gene detection kits and protein detection kits.
进一步,所述基因检测试剂盒包括用于检测CD73基因转录水平的试剂或芯片,所述蛋白检测试剂盒包括用于检测CD73蛋白表达水平的试剂或芯片。Further, the gene detection kit includes a reagent or chip for detecting the CD73 gene transcription level, and the protein detection kit includes a reagent or chip for detecting the CD73 protein expression level.
进一步,所述试剂盒还包括说明书。Furthermore, the kit also includes instructions.
进一步,所述试剂盒还包括缓冲液。Further, the kit also includes a buffer.
进一步,所述试剂盒还包括通过RT-PCR法、qRT-PCR法、生物芯片检测法、DNA印迹法、原位杂交法、免疫印迹法检测CD73基因或蛋白表达水平的试剂。Furthermore, the kit also includes reagents for detecting CD73 gene or protein expression levels through RT-PCR, qRT-PCR, biochip detection, Southern blotting, in situ hybridization, and immunoblotting.
进一步,所述样本包括血清、组织、外泌体。Further, the samples include serum, tissue, and exosomes.
进一步,所述样本选自血清。Further, the sample is selected from serum.
进一步,当血清中CD73的水平呈现显著性下调时,则诊断为帕金森病。Furthermore, when the level of CD73 in the serum shows a significant decrease, Parkinson's disease is diagnosed.
本发明的第二方面提供了一种帕金森病诊断、分期的产品,所述产品包括检测样本中CD73表达水平的试剂。A second aspect of the present invention provides a product for diagnosing and staging Parkinson's disease, which product includes a reagent for detecting the expression level of CD73 in a sample.
进一步,所述产品包括芯片、试纸、试剂盒或核酸膜条。Further, the products include chips, test strips, test kits or nucleic acid film strips.
进一步,所述样本包括血清、组织、外泌体。Further, the samples include serum, tissue, and exosomes.
进一步,所述样本选自血清。Further, the sample is selected from serum.
本发明的第三方面提供了一种筛选治疗帕金森病的候选药物的方法,所述方法包括:用待筛选物质处理表达或含有CD73基因或其编码的蛋白的培养体系;和检测所述体系中CD73基因或其编码的蛋白的表达或活性;其中,当所述待筛选物质促进CD73基因的或其编码的蛋白的表达水平或活性时,该待筛选物质是治疗帕金森病的候选药物。The third aspect of the present invention provides a method for screening candidate drugs for treating Parkinson's disease, the method comprising: treating a culture system expressing or containing the CD73 gene or the protein encoded by it with a substance to be screened; and detecting the system The expression or activity of the CD73 gene or the protein encoded by it; wherein, when the substance to be screened promotes the expression level or activity of the CD73 gene or the protein encoded by it, the substance to be screened is a candidate drug for treating Parkinson's disease.
本发明的第四方面提供了CD73作为靶标在筛选治疗帕金森病的候选药物中的应用。A fourth aspect of the invention provides the use of CD73 as a target in screening candidate drugs for treating Parkinson's disease.
进一步,所述筛选治疗帕金森病的候选药物的方法包括:用待筛选物质处理表达或含有CD73基因或其编码的蛋白的培养体系;和检测所述体系中CD73基因或其编码的蛋白的表达或活性;其中,当所述待筛选物质促进CD73基因的或其编码的蛋白的表达水平或活性时,该待筛选物质是治疗帕金森病的候选药物。Further, the method of screening candidate drugs for treating Parkinson's disease includes: treating a culture system that expresses or contains the CD73 gene or its encoded protein with a substance to be screened; and detecting the expression of the CD73 gene or its encoded protein in the system. Or activity; wherein, when the substance to be screened promotes the expression level or activity of the CD73 gene or the protein encoded by it, the substance to be screened is a candidate drug for treating Parkinson's disease.
本发明的第五方面提供了CD73在构建帕金森病诊断、分期的计算模型中的应用。The fifth aspect of the present invention provides the application of CD73 in constructing a computational model for diagnosis and staging of Parkinson's disease.
本发明的第六方面提供了CD73在构建帕金森病诊断、分期的系统/设备/计算机可读存储介质中的应用。The sixth aspect of the present invention provides the application of CD73 in constructing a system/device/computer-readable storage medium for diagnosing and staging Parkinson's disease.
本发明的优点和有益效果:本发明通过研究帕金森病患者与健康对照血清中CD73的水平,发现CD73在帕金森病患者血清中含量较健康对照人群显著下降,且PD患者血清CD73水平与H&Y分期和UPDRS-Ⅲ评分呈负相关(P<0.01),为帕金森病患者的有效诊断提供的新的方向,在临床上具有广阔的应用前景。Advantages and beneficial effects of the present invention: By studying the levels of CD73 in the serum of Parkinson's disease patients and healthy controls, the present invention found that the content of CD73 in the serum of Parkinson's disease patients was significantly lower than that of healthy controls, and the serum CD73 level of PD patients was significantly different from that of H&Y There is a negative correlation between stage and UPDRS-Ⅲ score (P<0.01), which provides a new direction for the effective diagnosis of Parkinson's disease patients and has broad clinical application prospects.
附图说明Description of the drawings
图1是训练集血清CD73差异水平图,其中,1A是血清CD73差异水平图,1B是ROC曲线图;Figure 1 is a graph of the difference level of serum CD73 in the training set, where 1A is a graph of the difference level of serum CD73, and 1B is a ROC curve graph;
图2是验证集血清CD73 ROC曲线图。Figure 2 is the ROC curve of serum CD73 in the validation set.
具体实施方式Detailed ways
下文提供了本说明书中使用的一些术语的定义。除非另有说明,本文中使用的所有技术和科学用语通常具有和本发明所属领域的普通技术人员通常理解的意思相同的意思。Definitions of some terms used in this specification are provided below. Unless otherwise defined, all technical and scientific terms used herein generally have the same meaning as commonly understood by one of ordinary skill in the art to which this invention belongs.
本发明提供了检测样本中CD73表达水平的试剂在制备帕金森病诊断、分期的产品中的应用。The invention provides the application of a reagent for detecting CD73 expression levels in samples in preparing products for diagnosing and staging Parkinson's disease.
在本发明中,CD73包括野生型、突变型或其片段。该术语涵盖全长,未加工的CD73,以及源自细胞中加工的任何形式的CD73,以及CD73的天然发生变体(例如剪接变体或等位变体)。该术语涵盖例如人的CD73以及来自任何其它脊椎动物来源的CD73,包括哺乳动物,诸如灵长动物和啮齿动物(例如小鼠和大鼠)的CD73,基因ID:4907。In the present invention, CD73 includes wild type, mutant type or fragments thereof. The term encompasses full-length, unprocessed CD73, as well as any form of CD73 derived from processing in the cell, as well as naturally occurring variants of CD73 (e.g., splice variants or allelic variants). The term encompasses, for example, human CD73 as well as CD73 from any other vertebrate source, including CD73 from mammals, such as primates and rodents (eg, mice and rats), Gene ID: 4907.
在本发明中,诊断、诊断的、进行诊断及这些术语的变化型是指基于与个体相关的一个或其以上的征兆、症状、数据或其他信息,来对个体的健康状态或状况的发现、判断或认知。个体的健康状态可被诊断为健康的/正常的(即,不存在疾病或疾患),或者可被诊断为不健康的/异常的(即,存在疾病或疾患或特性的评估)。上述术语诊断、诊断的、进行诊断等包括与特定疾病或疾患相关地,疾病的早期发现;疾病的特性或分类;疾病的进展、治愈或复发的发现;个体的处置或治疗后,对疾病的反应的发现。As used herein, diagnosis, diagnosing, making a diagnosis, and variations of these terms refer to the discovery, discovery, or condition of an individual's health or condition based on one or more signs, symptoms, data, or other information related to the individual. Judgment or cognition. An individual's health status may be diagnosed as healthy/normal (ie, the absence of a disease or disorder), or may be diagnosed as unhealthy/abnormal (ie, the assessment of a disease or disorder or characteristic is present). The above terms diagnose, diagnose, perform diagnosis, etc. include, in relation to a specific disease or disorder, the early detection of a disease; the characteristics or classification of a disease; the discovery of the progression, cure, or recurrence of a disease; the disposition or treatment of an individual, the response to the disease. Reaction discovery.
在本发明中,表达水平或者水平,是指本发明中CD73的绝对量或相对量,可以通过多种技术确定本发明中CD73的表达水平,特别地,可以通过使用本领域技术人员熟知的方法对本发明中CD73的绝对量或相对量进行检测。In the present invention, expression level or level refers to the absolute or relative amount of CD73 in the present invention. The expression level of CD73 in the present invention can be determined by a variety of techniques. In particular, it can be determined by using methods well known to those skilled in the art. The absolute or relative amount of CD73 in the present invention is detected.
所述试剂选自特异性识别CD73基因的探针、特异性扩增CD73基因的引物或特异性结合CD73基因编码的蛋白的结合剂。The reagent is selected from a probe that specifically recognizes the CD73 gene, a primer that specifically amplifies the CD73 gene, or a binding agent that specifically binds to the protein encoded by the CD73 gene.
在本发明中,特异性识别CD73基因的探针可以是DNA、RNA、DNA-RNA嵌合体、PNA或其它衍生物。所述探针的长度没有限制,只要完成特异性杂交、与目的核苷酸序列特异性结合,任何长度都可以。所述探针的长度可短至10、25、20、15、13或10个碱基长度。同样,所述探针的长度可长至60、80、100、150、300个碱基对或更长,甚至整个基因。由于不同的探针长度对杂交效率、信号特异性有不同的影响,所述探针的长度通常至少是14个碱基对,最长一般不超过30个碱基对,与目的核苷酸序列互补的长度以15-25个碱基对最佳。所述探针自身互补序列最好少于4个碱基对,以免影响杂交效率。In the present invention, the probe that specifically recognizes the CD73 gene can be DNA, RNA, DNA-RNA chimera, PNA or other derivatives. There is no limit to the length of the probe. As long as it completes specific hybridization and specifically binds to the target nucleotide sequence, any length is acceptable. The probes can be as short as 10, 25, 20, 15, 13 or 10 bases in length. Likewise, the length of the probe can be 60, 80, 100, 150, 300 base pairs or more, or even the entire gene. Since different probe lengths have different effects on hybridization efficiency and signal specificity, the length of the probe is usually at least 14 base pairs, and the longest is generally no more than 30 base pairs, which is consistent with the target nucleotide sequence. The optimal complementary length is 15-25 base pairs. The self-complementary sequence of the probe is preferably less than 4 base pairs, so as not to affect the hybridization efficiency.
在本发明中,引物指能够与核酸杂交并允许互补核酸的聚合作用(一般通过提供游离的3’-OH基团)的单链多核苷酸。所述引物能够实现靶序列的特异性扩增。特异性扩增是指与非靶序列相比,In the present invention, a primer refers to a single-stranded polynucleotide capable of hybridizing to a nucleic acid and allowing polymerization of complementary nucleic acid (generally by providing a free 3'-OH group). The primers enable specific amplification of target sequences. Specific amplification refers to the
本发明的引物或探针可以使用磷酰亚胺固相支持法或其他熟知方法化学合成。也可以使用本领域已知的许多手段修饰。这些修饰的非限制性实例包括甲基化、加帽、用天然核苷酸的一种或多种类似物进行的置换和在核苷酸之间的修饰,例如,修饰不带电荷的连接体(例如,磷酸甲酯、磷酸三酯、磷酰亚胺、氨基甲酸酯等),或修饰带电荷的连接体(例如,硫代磷酸酯、二硫代磷酸酯等)。The primers or probes of the present invention can be chemically synthesized using the phosphorimide solid phase support method or other well-known methods. Modification can also be performed using many means known in the art. Non-limiting examples of these modifications include methylation, capping, substitution with one or more analogs of the natural nucleotide and modifications between nucleotides, e.g., modification of uncharged linkers (e.g., methyl phosphate, phosphotriester, phosphorimide, carbamate, etc.), or modified charged linkers (e.g., phosphorothioate, phosphorodithioate, etc.).
所述引物或探针使用标记物质标记。The primer or probe is labeled with a labeling substance.
所述标记物质包括但不限于荧光物质、放射性同位素或酶。The labeling substances include, but are not limited to, fluorescent substances, radioactive isotopes or enzymes.
其中,荧光物质包括但不限于TAMRATTM、Alexa555、Alexa647、花青染料系列的Cy3、Cy5、荧光素。Among them, fluorescent substances include but are not limited to TAMRATTM, Alexa555, Alexa647, Cy3, Cy5 and fluorescein of the cyanine dye series.
放射性同位素包括但不限于32P、33P、35S。Radioactive isotopes include but are not limited to 32P, 33P, and 35S.
酶包括但不限于碱性磷酸酶、辣根过氧化物酶。Enzymes include, but are not limited to, alkaline phosphatase and horseradish peroxidase.
用标记物质标记的本发明所涉及的引物或探针中,标记物质可以与引物或探针直接结合,也可以经由连接体结合。作为连接体,只要是在该领域中通常使用的连接体即可,具体而言,例如,优选1~3个碱基的核酸,更优选1~3个碱基的DNA,进一步优选2个碱基的DNA,尤其优选腺嘌呤(A)-腺嘌呤(A)这2个碱基。In the primer or probe according to the present invention labeled with a labeling substance, the labeling substance may be directly bound to the primer or probe, or may be bound via a linker. The linker may be any linker commonly used in this field. Specifically, for example, a nucleic acid of 1 to 3 bases is preferred, a DNA of 1 to 3 bases is more preferred, and a DNA of 2 bases is even more preferred. base DNA, particularly preferably the two bases adenine (A) and adenine (A).
作为用荧光物质标记本发明所涉及的引物或探针的方法,只要根据通常在该领域中进行的本身公知的方法进行即可,具体而言,例如,可举出根据本领域公知的方法将用荧光素标记的核苷酸掺入到引物或探针中的方法。The method of labeling the primers or probes according to the present invention with a fluorescent substance may be carried out according to a well-known method generally performed in this field. Specifically, for example, a method known in the art may be used. A method of incorporating fluorescein-labeled nucleotides into primers or probes.
作为用放射性同位素标记本发明所涉及的引物或探针的方法,只要根据通常在该领域中进行的本身公知的方法进行即可,具体而言,例如,可举出通过掺入用放射性同位素标记的核苷酸来标记的方法等。具体而言,可举出随机引物法、缺口平移法、基于T4多核苷酸激酶的5’末端标记法、基于末端脱氧核苷酸转移酶的3’末端标记法等。The method of labeling the primer or probe according to the present invention with a radioactive isotope may be carried out according to a known method generally performed in this field. Specific examples include labeling with a radioactive isotope by incorporation. Methods for labeling nucleotides, etc. Specific examples include the random priming method, the nick translation method, the 5' end labeling method based on T4 polynucleotide kinase, the 3' end labeling method based on terminal deoxynucleotidyl transferase, and the like.
作为用酶标记本发明所涉及的引物或探针的方法,只要根据通常在该领域中进行的本身公知的方法进行即可,具体而言,例如,可举出使碱性磷酸酶、辣根过氧化物酶等酶分子与要标记的引物或探针直接共价结合的直接标记法等。The method of labeling the primer or probe of the present invention with an enzyme may be carried out according to a known method generally performed in this field. Specific examples include alkaline phosphatase, horseradish, etc. Direct labeling methods in which enzyme molecules such as peroxidase are directly covalently bound to the primer or probe to be labeled, etc.
在本发明中,结合剂指特异性结合靶序列的天然存在的或非天然存在的分子。特异性结合剂的实例包括但不限于蛋白、肽、核酸、碳水化合物和脂质。In the present invention, a binding agent refers to a naturally occurring or non-naturally occurring molecule that specifically binds to a target sequence. Examples of specific binding agents include, but are not limited to, proteins, peptides, nucleic acids, carbohydrates, and lipids.
在本发明中,特异性结合CD73基因编码的蛋白的结合剂例如蛋白质CD73受体、结合蛋白质CD73的凝集素、针对蛋白质CD73的抗体、针对蛋白质CD73的肽抗体(peptidebody)、双特异性双重结合剂或双特异性抗体形式。特异性结合剂的具体例子包括肽、肽模拟物、aptamer、spiegelmer、darpin、锚蛋白重复蛋白、Kunitz型域、抗体。In the present invention, binding agents that specifically bind to the protein encoded by the CD73 gene include protein CD73 receptors, lectins that bind to protein CD73, antibodies against protein CD73, peptide antibodies against protein CD73 (peptidebodies), bispecific dual binding agent or bispecific antibody format. Specific examples of specific binding agents include peptides, peptidomimetics, aptamers, spiegelmers, darpins, ankyrin repeat proteins, Kunitz-type domains, and antibodies.
所述产品包括芯片、试纸、试剂盒或核酸膜条。The products include chips, test strips, test kits or nucleic acid film strips.
在本发明中,芯片也称为阵列,指包含连接的核酸或肽探针的固体支持物。阵列通常包含按照不同的已知位置连接至基底表面的多种不同的核酸或肽探针。这些阵列,也称为“微阵列”,通常可以利用机械合成方法或光引导合成方法来产生这些阵列,所述光引导合成方法合并了光刻方法和固相合成方法的组合。阵列可以包含平坦的表面,或者可以是珠子、凝胶、聚合物表面、诸如光纤的纤维、玻璃或任何其它合适的基底上的核酸或肽。可以以一定的方式来包装阵列,从而允许进行全功能装置的诊断或其它方式的操纵。In the present invention, a chip is also called an array, which refers to a solid support containing attached nucleic acid or peptide probes. Arrays typically contain a variety of different nucleic acid or peptide probes attached to the substrate surface at different known locations. These arrays, also known as "microarrays," can generally be produced using mechanical synthesis methods or light-guided synthesis methods that incorporate a combination of photolithographic and solid-phase synthesis methods. The array may comprise a flat surface, or may be nucleic acids or peptides on beads, gels, polymeric surfaces, fibers such as optical fibers, glass or any other suitable substrate. The array can be packaged in a manner that allows diagnostics or other manipulation of the fully functional device.
术语“微阵列”是杂交阵列原件有序排列在基质上,所述杂交阵列原件诸如聚核苷酸探针(例如寡核苷酸)或结合剂(例如抗体)。所述基质可以是固体基质,例如,玻璃或二氧化硅玻片、珠、纤维光学粘结剂或半固态基质,例如硝酸纤维素膜。核苷酸序列可以是DNA、RNA或其中的任何排列。The term "microarray" is an ordered arrangement of hybridization array elements, such as polynucleotide probes (eg, oligonucleotides) or binding agents (eg, antibodies), on a substrate. The substrate may be a solid substrate such as a glass or silica slide, beads, fiber optic adhesive, or a semi-solid substrate such as a nitrocellulose membrane. The nucleotide sequence can be DNA, RNA, or any arrangement thereof.
在本发明中,芯片包括基因芯片、蛋白质芯片;所述基因芯片包括固相载体以及固定在固相载体的探针,所述探针包括用于检测CD73基因转录水平的针对CD73基因的寡核苷酸探针;所述蛋白质芯片包括固相载体以及固定在固相载体的CD73蛋白的特异性抗体;所述基因芯片可用于检测包括人CD73基因在内的多个基因(例如,与帕金森病相关的多个基因)的表达水平。所述蛋白质芯片可用于检测包括人CD73蛋白在内的多个蛋白质(例如与帕金森病相关的多个蛋白质)的表达水平。通过将多个与帕金森病相关的标志物同时检测,可大大提高诊断帕金森病的准确率。In the present invention, the chip includes a gene chip and a protein chip; the gene chip includes a solid phase carrier and a probe fixed on the solid phase carrier, and the probe includes an oligonucleotide targeting the CD73 gene for detecting the CD73 gene transcription level. The protein chip includes a solid-phase carrier and a specific antibody for the CD73 protein immobilized on the solid-phase carrier; the gene chip can be used to detect multiple genes including the human CD73 gene (for example, related to Parkinson's disease). The expression levels of multiple disease-related genes). The protein chip can be used to detect the expression levels of multiple proteins including human CD73 protein (eg, multiple proteins related to Parkinson's disease). By detecting multiple markers related to Parkinson's disease simultaneously, the accuracy of diagnosing Parkinson's disease can be greatly improved.
在本发明中,试剂盒还可以包括荧光色素,可使用多种已知的荧光色素。例如,可举出使用具有标识功能的嵌入剂(intercalator)的方法、使用在相对扩增的DNA序列特异性地杂交的核苷酸上结合荧光物质的探针的方法等。作为嵌入剂,可举出作为不饱和型荧光色素的溴化乙锭、SYBR GreenI、作为饱和型荧光色素的Resolight(Roche公司制)、EvaGreen(Biotim公司制)。优选的嵌入剂为作为不饱和型荧光色素的SYBR Green I、作为饱和型荧光色素的EvaGreen、Resolight,更优选为作为饱和型荧光色素的EvaGreen、Resolight。对于使用量而言,按照使用的荧光色素的制造销售厂商的推荐。In the present invention, the kit may also include a fluorescent dye, and a variety of known fluorescent dyes may be used. Examples include a method using an intercalator having a labeling function, a method using a probe that binds a fluorescent substance to a nucleotide that hybridizes specifically to an amplified DNA sequence, and the like. Examples of the intercalating agent include ethidium bromide and SYBR GreenI which are unsaturated fluorescent dyes, and Resolight (manufactured by Roche) and EvaGreen (manufactured by Biotim) which are saturated fluorescent dyes. Preferred intercalating agents are SYBR Green I which is an unsaturated fluorescent dye, and EvaGreen and Resolight which are saturated fluorescent dyes, and more preferably EvaGreen and Resolight which are saturated fluorescent dyes. Regarding the dosage, follow the recommendations of the manufacturer and seller of the fluorescent pigment used.
所述试剂盒还包括说明书,说明书可以包括关于获得样品、处理样品的指导。The kit also includes instructions, which may include instructions on obtaining the sample and processing the sample.
此外,试剂盒中可包含作为PCR的阳性对照而使用的细菌的基因组DNA、作为阴性对照而使用的无菌水。In addition, the kit may include bacterial genomic DNA used as a positive control for PCR and sterile water used as a negative control.
在本发明中,试剂盒的组分可以以水介质的形式或以冻干的形式来包装。试剂盒中适当的容器通常至少包括一种小瓶、试管、长颈瓶、宝特瓶、针筒或其它容器,其中可放置一种组分,并且优选地,可进行适当地等分。在试剂盒中存在多于一种的组分时,试剂盒中通常也将包含第二、第三或其它附加的容器,其中分离地放置附加的组分。然而,不同组合的组分可被包含在一个小瓶中。本发明的试剂盒通常也将包括一种用于容纳反应物的容器,密封以用于商业销售。这种容器可包括注模或吹模的塑料容器,其中可保留所需的小瓶。In the present invention, the components of the kit may be packaged in an aqueous medium or in a lyophilized form. Suitable containers in a kit will usually include at least one vial, test tube, flask, PET bottle, syringe or other container into which one of the components can be placed and, preferably, appropriately aliquoted. Where more than one component is present in a kit, the kit will typically also contain a second, third or other additional container in which the additional components are separately located. However, different combinations of components can be contained in one vial. Kits of the present invention will also typically include a container for holding the reagents, sealed for commercial sale. Such containers may include injection molded or blow molded plastic containers in which the desired vials may be retained.
所述试剂盒的固相支持物可以是例如塑料、硅片、金属、树脂、玻璃、膜、颗粒、沉淀物、凝胶、聚合物、薄片、球、多糖、毛细管、胶片、板或载片。所述生物样品可以是例如细胞培养物、细胞系、组织、口腔组织、胃肠组织、器官、细胞器、生物液体、血清样品、尿液样品或皮肤。The solid support of the kit can be, for example, plastic, silicon wafer, metal, resin, glass, membrane, particle, precipitate, gel, polymer, flake, sphere, polysaccharide, capillary, film, plate or slide . The biological sample may be, for example, a cell culture, cell line, tissue, oral tissue, gastrointestinal tissue, organ, organelle, biological fluid, serum sample, urine sample or skin.
在本发明中,核酸膜条包括基底和固定于所述基底上的探针;所述基底可以是任何适于固定探针的基底,包括但不限于尼龙膜、硝酸纤维素膜、聚丙烯膜、玻璃片、硅胶晶片、微缩磁珠。In the present invention, the nucleic acid membrane strip includes a base and a probe fixed on the base; the base can be any base suitable for fixing the probe, including but not limited to nylon membrane, nitrocellulose membrane, polypropylene membrane , glass sheets, silica gel wafers, miniature magnetic beads.
本发明中所述的芯片、试纸、试剂盒或核酸膜条可用于检测包括CD73基因或蛋白在内的多个基因或蛋白及其表达产物的表达水平。The chip, test paper, kit or nucleic acid membrane strip described in the present invention can be used to detect the expression levels of multiple genes or proteins including the CD73 gene or protein and their expression products.
在本发明中,样本或样品具有相同的意义,可互换使用。样本或样品是指从个体获得或用其他方式取得的任何物质、生物流体、组织或细胞。其包括血液(包括全血、白血球、外周血单核细胞、血沉棕黄层、血浆和血清)、组织、外泌体、痰液、泪液、粘液、鼻洗液、鼻抽吸物、呼吸样、尿液、精液、唾液、脑膜液、羊水、腺液、淋巴液、乳头抽吸物、支气管抽吸物、滑膜液、关节抽吸物、腹水、细胞、细胞提取物和脑脊液。其还包括上述全部的实验分离级分。例如,血液样本可分级为血清或含特定类型的血细胞的级分,例如红细胞或白细胞(白血球)。若需要,样本可以是来自个体的样本的组合,例如组织和流体样本的组合。样本还包括含均质固体物质的物质,例如来自粪便样本、组织样本或活检组织的物质。样本还包括来源于组织培养或细胞培养的物质。可利用用于获得生物样本的任何适宜的方法;示例性的方法包括,例如,静脉切开术、擦拭(例如,口腔擦拭)和细针穿刺活检过程。还可通过例如显微解剖(例如,激光捕获显微切割(LCM)或激光显微切割(LMD))、涂片(例如,PAP涂片)或导管灌洗来收集样本。从个体获得或来源于个体的样本包括在从个体获得之后以任何适宜的方式处理的任何这样的样本。In the present invention, sample or sample have the same meaning and can be used interchangeably. Sample or sample means any substance, biological fluid, tissue or cell obtained or otherwise obtained from an individual. It includes blood (including whole blood, white blood cells, peripheral blood mononuclear cells, buffy coat, plasma and serum), tissue, exosomes, sputum, tears, mucus, nasal wash, nasal aspirate, breath samples , urine, semen, saliva, meningeal fluid, amniotic fluid, glandular fluid, lymph fluid, nipple aspirate, bronchial aspirate, synovial fluid, joint aspirate, ascites, cells, cell extracts and cerebrospinal fluid. It also includes all experimental fractions described above. For example, a blood sample may be fractionated into serum or a fraction containing specific types of blood cells, such as red blood cells or white blood cells (leukocytes). If desired, the sample may be a combination of samples from the individual, such as a combination of tissue and fluid samples. Samples also include materials containing homogeneous solid material, such as material from stool samples, tissue samples, or biopsies. Samples also include material derived from tissue culture or cell culture. Any suitable method for obtaining a biological sample may be utilized; exemplary methods include, for example, phlebotomy, swabbing (eg, buccal swabbing), and fine needle aspiration biopsy procedures. Samples may also be collected by, for example, microdissection (eg, laser capture microdissection (LCM) or laser microdissection (LMD)), smearing (eg, PAP smear), or catheter lavage. A sample obtained from or derived from an individual includes any such sample that is processed in any suitable manner after being obtained from the individual.
在本发明的实施方案中,样本包括血清、组织、外泌体。In embodiments of the present invention, samples include serum, tissue, and exosomes.
在本发明的具体实施方案中,所述样本选自血清。In a specific embodiment of the invention, said sample is selected from serum.
本发明提供了CD73在构建帕金森病诊断、分期的计算模型中的应用。The present invention provides the application of CD73 in constructing a computational model for diagnosis and staging of Parkinson's disease.
在本发明中,所述计算模型包括CD73的表达水平。正如熟练技术人员知道的,可以以不同方式实施和实现将CD73水平与某种可能性或风险关联起来的步骤。优选的,在数学上组合CD73和一种或多种其它标志物的测定浓度,并将组合值与根本的诊断问题关联起来。可以通过任何适宜的现有技术数学方法将标志物值的测定组合。In the present invention, the computational model includes the expression level of CD73. As the skilled artisan will know, the steps of correlating CD73 levels with a certain likelihood or risk can be implemented and accomplished in different ways. Preferably, the measured concentrations of CD73 and one or more other markers are mathematically combined and the combined values are correlated to the underlying diagnostic question. Determinations of marker values may be combined by any suitable prior art mathematical method.
本发明提供了CD73在构建帕金森病诊断、分期的系统/设备/计算机可读存储介质中的应用。The present invention provides the application of CD73 in constructing a system/device/computer-readable storage medium for diagnosing and staging Parkinson's disease.
在本发明中,系统的实施可包括手动地、自动地、或它们组合地来执行或完成所选任务。而且,根据本发明的系统的实施方式的实际仪器和设备,可通过硬件、通过软件、或通过固件或通过它们的组合使用操作系统来实施多个所选任务。In the present invention, implementation of the system may include performing or completing selected tasks manually, automatically, or a combination thereof. Furthermore, actual instruments and devices according to embodiments of the system of the present invention may use an operating system to perform a plurality of selected tasks by hardware, by software, or by firmware, or by a combination thereof.
例如,用于执行所选任务的硬件可以是芯片或电路。作为软件,所选任务可实施为通过计算机使用任何合适的操作系统执行的多个软件指令。在本发明中,根据如本发明所述方法和/或系统的示例性实施方式的一个或多个任务可通过处理单元,如用于执行多个指令的计算平台来执行。可选地,该处理单元包括用于存储指令和/或数据的易失性存储器,和/或用于存储指令和/或数据的非易失性存储器,例如,磁性硬盘和/或可移动介质。可选地,还提供网络连接。还可选地提供显示器和/或用户输入装置诸如键盘或鼠标。For example, the hardware used to perform the selected task may be a chip or a circuit. As software, the selected tasks may be implemented as a plurality of software instructions executed by a computer using any suitable operating system. In the present invention, one or more tasks according to exemplary embodiments of methods and/or systems according to the present invention may be performed by a processing unit, such as a computing platform for executing a plurality of instructions. Optionally, the processing unit includes volatile memory for storing instructions and/or data, and/or non-volatile memory for storing instructions and/or data, for example, a magnetic hard disk and/or removable media. . Optionally, network connectivity is also provided. A display and/or user input device such as a keyboard or mouse may also optionally be provided.
在本发明中,计算机可读存储介质诸如计算机可执行代码,可以采取多种形式,包括但不限于有形存储介质、载波介质或物理传输介质。非易失性存储介质包括,例如光盘或磁盘,诸如在任何计算机中的任何存储设备,易失性存储介质包括动态存储器,诸如此类计算机平台的主存储器。有形的传输介质包括同轴电缆;铜线和光纤,包括构成计算机系统内的总线的导线。载波传输介质可以采取电信号或电磁信号或者声波或光波的形式,诸如在射频和红外数据通信期间生成的那些。因此,计算机可读介质的常见形式包括例如:软盘、软性磁盘、硬盘、磁带、任何其他磁介质、CD-ROM、DVD或DVD-ROM、任何其他光学介质、穿孔卡片纸带、具有孔模式的任何其他物理存储介质、RAM、ROM、PROM和EPROM、FLASH-EPROM、任何其他存储器芯片或盒、传输数据或指令的载波、传输此类载波的缆线或链路,或者计算机可以从其读取编程代码和/或数据的任何其他介质。这些计算机可读介质的形式中的许多形式可以参与向处理器传送一个或更多个指令的一个或更多个序列以用于执行。In the present invention, computer-readable storage media, such as computer-executable code, may take many forms, including but not limited to tangible storage media, carrier wave media, or physical transmission media. Non-volatile storage media includes, for example, optical or magnetic disks, such as any storage device in any computer, and volatile storage media includes dynamic memory, such as the main memory of such a computer platform. Tangible transmission media include coaxial cable; copper wire and fiber optics, including the wires that make up the buses within computer systems. Carrier transmission media may take the form of electrical or electromagnetic signals, or acoustic or light waves, such as those generated during radio frequency and infrared data communications. Thus, common forms of computer readable media include, for example: floppy disk, floppy disk, hard drive, magnetic tape, any other magnetic media, CD-ROM, DVD or DVD-ROM, any other optical media, punched cardstock tape, tape with hole pattern any other physical storage media, RAM, ROM, PROM and EPROM, FLASH-EPROM, any other memory chip or cartridge, carrier waves that transmit data or instructions, cables or links that transmit such carrier waves, or from which a computer can read Any other medium to retrieve programming code and/or data. Many of these forms of computer-readable media may be involved in conveying one or more sequences of one or more instructions to a processor for execution.
下面结合具体实施例进一步阐述此发明。应理解的是,在此描述的特定实施方式通过举例的方式来表示,并不作为对本发明的限制。在不偏离本发明范围的情况下,本发明的主要特征可以用于各种实施方式。This invention will be further described below in conjunction with specific embodiments. It should be understood that the specific embodiments described herein are presented by way of example and are not intended to be limiting of the invention. The principal features of the invention may be employed in various embodiments without departing from the scope of the invention.
实施例Example
1资料与方法1 Materials and methods
1.1研究对象1.1 Research objects
本研究的样本纳入2019年11月至2023年4月于河北医科大学第二医院老年病科住院的PD患者,其中,训练集纳入PD患者33例为病例组,其中,女性16名(48.5%),男性17名(51.5%);吸烟者0名;另纳入同时期体检中心接待的健康体查者35例为健康对照组,其中,女性20名(57.1%),男性15名(42.9%);吸烟者0名。The samples of this study included PD patients hospitalized in the Geriatrics Department of the Second Hospital of Hebei Medical University from November 2019 to April 2023. Among them, 33 PD patients were included in the training set as the case group, of which 16 were female (48.5% ), 17 males (51.5%); 0 smokers; 35 healthy examination subjects received by the physical examination center during the same period were also included as healthy controls, including 20 females (57.1%) and 15 males (42.9% ); 0 smokers.
验证集纳入PD患者97例为病例组,其中,女性51名(52.6%),男性46名(47.4%),吸烟者10名(10.3%);另纳入同时期体检中心接待的健康体查者71例为健康对照组,其中,女性31名(43.7%),男性40名(56.3%),吸烟者14名(19.7%)。The validation set included 97 PD patients as the case group, including 51 women (52.6%), 46 men (47.4%), and 10 smokers (10.3%); healthy subjects received by the physical examination center during the same period were also included. 71 cases were healthy controls, including 31 women (43.7%), 40 men (56.3%), and 14 smokers (19.7%).
1.2纳入标准1.2 Inclusion criteria
①符合2016版中国帕金森病诊断和拟诊标准;②病程达1年及以上;③患者存在下列某一项或多项特征且显而易见,包括姿势不稳、静止性震颤、肌肉僵直、非原发性视觉障碍等;④临床资料完整;⑤患者与家属知晓,签署知情同意书,并经本院伦理委员会讨论通过(伦理审查决议编号:2022-R039)。① Meet the 2016 Chinese Parkinson's Disease Diagnosis and Preliminary Diagnosis Criteria; ② The duration of the disease is 1 year or more; ③ The patient has one or more of the following characteristics that are obvious, including postural instability, resting tremor, muscle stiffness, and non-original symptoms. ④ The clinical data are complete; ⑤ The patient and family members were informed, signed an informed consent form, and was discussed and approved by the ethics committee of our hospital (ethical review resolution number: 2022-R039).
1.3排除标准1.3 Exclusion criteria
①继发性帕金森综合征患者;②帕金森叠加综合征患者;③有严重心、肝、肾、胃肠道功能障碍者;④提供病史不清楚详细者;⑤近1个月内有感染者;⑥患有免疫系统疾病者;⑦有慢性感染性疾病者;⑧近1个月内使用消炎药、免疫调节药者;⑨有恶性肿瘤病史者;⑩近期有外伤或头颅手术者。①Patients with secondary Parkinson's syndrome; ②Patients with Parkinson's superimposed syndrome; ③Those with severe heart, liver, kidney, and gastrointestinal dysfunction; ④Those who provide unclear detailed medical history; ⑤Infection within the past month ⑥Those with immune system diseases; ⑦Those with chronic infectious diseases; ⑧Those who have used anti-inflammatory drugs and immunomodulatory drugs in the past month; ⑨Those with a history of malignant tumors; ⑩Those who have recently suffered trauma or head surgery.
1.4研究内容及方法1.4 Research content and methods
收集纳入对象资料包括:①基本资料:性别、吸烟史以及病例组患者的病程。②病例组患者病情评估:采用统一帕金森病评定量表第3部分(运动检查)(the unifiedParkinson’s disease rating scale partⅢ,UPDRS-Ⅲ)对患者运动功能进行测评(皆在患者临时停药,处于“关”状态下评估),此量表共14项,每项按照相应症状的严重程度不同为0-4分,得分越低者表示生活质量越优;采用H&Y分期对患者运动障碍严重程度进行测评,根据患者运动症状的分级划分为轻度PD组(H&Y为Ⅰ期,Ⅱ期)和中重度PD组(H&Y为Ⅲ-Ⅴ期)。以上测评均由2个神经内科主治医师共同参与。③血清CD73结果:采用所有纳入者空腹抽取静脉血并送往河北医科大学第二医院检验科全自动生化分析仪检测所得的5’-NT数值。The data collected on the included subjects include: ①Basic information: gender, smoking history, and disease course of the patients in the case group. ②Evaluation of the patient's condition in the case group: The unified Parkinson's disease rating scale part III (UPDRS-III) was used to evaluate the patient's motor function (all were performed after the patient temporarily stopped taking medication and was in " "off" state), this scale has 14 items in total, each item is scored from 0 to 4 according to the severity of the corresponding symptom. The lower the score, the better the quality of life; the H&Y staging is used to evaluate the severity of the patient's movement disorder. , according to the grading of patients’ motor symptoms, they were divided into mild PD group (H&Y stages I and II) and moderate-to-severe PD group (H&Y stages III-V). The above evaluations were jointly conducted by two attending neurologists. ③Serum CD73 results: The 5’-NT value obtained from the fasting venous blood drawn from all participants and sent to the Laboratory Department of the Second Hospital of Hebei Medical University for detection by a fully automatic biochemical analyzer.
1.5统计学方法1.5 Statistical methods
采用SPSS软件26.0版本进行统计分析,计量资料且符合正态分布的采用t检验,以表示,否则采用中位数(四分位数间距)[M(Q1,Q3)]表示,进行秩和检验;计数资料采用x^2检验,以例数(百分数)[n(%)]表现;采用二元Logistic回归分析各危险因素与PD的相关性;预测价值采用受试者工作特征曲线分析,获取曲线下面积(area under thecurve,AUC)、置信区间、敏感度、特异度及截断值;皮尔逊法(Pearson)用于病例组血清CD73和H&Y分期、UPDRS-Ⅲ评分的相关性分析。One-way ANOVA用于分析不同H&Y分期PD患者血清中CD73水平变化,以P<0.05为差异有统计学意义。SPSS software version 26.0 was used for statistical analysis. If the measurement data conformed to the normal distribution, the t test was used. otherwise, the median (interquartile range) [M (Q1, Q3)] is used to represent the rank sum test; the count data is represented by the x^2 test and expressed as the number of cases (percentage) [n (%)] ; Binary logistic regression was used to analyze the correlation between each risk factor and PD; the predictive value was analyzed using the receiver operating characteristic curve to obtain the area under the curve (AUC), confidence interval, sensitivity, specificity and cutoff value. ; Pearson method (Pearson) was used to analyze the correlation between serum CD73, H&Y stage and UPDRS-Ⅲ score in the case group. One-way ANOVA was used to analyze the changes in serum CD73 levels in PD patients with different H&Y stages, and P < 0.05 was considered a statistically significant difference.
2实验结果2Experimental results
2.1病例组和健康对照组一般资料分析2.1 General data analysis of case group and healthy control group
本研究验证集共纳入研究对象168例。其中,病例组97例,健康对照组71例。两组研究对象性别分布均衡(P>0.05),是否有吸烟史无明显差别(P>0.05)。此外,病例组病程为2.0(1.0,4.0)年,H&Y分期为2.0(2.0,3.0),UPDRS-Ⅲ评分为18.66±0.70分。CD73在PD患者外周血中表达显著降低(P<0.01)(表1)。A total of 168 research subjects were included in the validation set of this study. Among them, there were 97 cases in the case group and 71 cases in the healthy control group. The gender distribution of the research subjects in the two groups was balanced (P>0.05), and there was no significant difference in whether they had a history of smoking (P>0.05). In addition, the disease duration of the case group was 2.0 (1.0, 4.0) years, the H&Y stage was 2.0 (2.0, 3.0), and the UPDRS-III score was 18.66±0.70 points. The expression of CD73 in the peripheral blood of PD patients was significantly reduced (P<0.01) (Table 1).
表1验证集病例组与健康对照组一般资料分析Table 1 General data analysis of validation set case group and healthy control group
注:a为t检验;b为卡方检验;c为秩和检验Note: a is t test; b is chi-square test; c is rank sum test
2.2血清CD73和其他危险因素与帕金森病相关性的Logistic回归分析2.2 Logistic regression analysis of the correlation between serum CD73 and other risk factors and Parkinson’s disease
经过Logistic回归分析,在调整了性别、吸烟史后,结果显示血清CD73水平越低,患PD的风险越大(OR=0.208,P<0.01)(表2)。After logistic regression analysis, after adjusting for gender and smoking history, the results showed that the lower the serum CD73 level, the greater the risk of PD (OR=0.208, P<0.01) (Table 2).
表2验证集血清CD73和其他危险因素与PD相关性的Logistic回归分析Table 2 Logistic regression analysis of the correlation between serum CD73 and other risk factors and PD in the validation set
注:*为健康对照组Note: * is the healthy control group
2.3血清CD73在PD中的差异表达2.3 Differential expression of serum CD73 in PD
训练集中,以健康对照组为阳性样本,病例组为阴性样本绘制ROC曲线,结果显示血清CD73对PD预测的AUC为0.844(图1)。In the training set, a ROC curve was drawn using the healthy control group as positive samples and the case group as negative samples. The results showed that the AUC of serum CD73 in predicting PD was 0.844 (Figure 1).
验证集中血清CD73对PD预测的AUC为0.845,最佳敏感度为90.1%,特异度为67.0%(表3,图2)。The AUC of serum CD73 in predicting PD in the validation set was 0.845, the best sensitivity was 90.1%, and the specificity was 67.0% (Table 3, Figure 2).
表3验证集血清CD73对PD的预测ROC曲线Table 3 Prediction ROC curve of serum CD73 for PD in the validation set
注:a表示单位为U/LNote: a means the unit is U/L
2.4轻度PD组与中重度PD组一般资料分析2.4 General data analysis of mild PD group and moderate to severe PD group
按照H&Y分期对病例组研究对象进行分组,Ⅰ期,Ⅱ期为轻度PD组(n=50);Ⅲ-Ⅴ期为中重度PD组(n=47)。两组患者性别及吸烟史无统计学差异(P>0.05)。中重度PD组比轻度PD组患者病程更长,UPDRS-Ⅲ评分更高,而血清CD73水平显著降低(P<0.05)(表4)。The study subjects in the case group were divided into groups according to the H&Y stage. Stages I and II were the mild PD group (n=50); stages III-V were the moderate and severe PD group (n=47). There was no statistical difference in gender and smoking history between the two groups (P>0.05). Patients in the moderate-to-severe PD group had a longer course of disease, higher UPDRS-III scores, and significantly lower serum CD73 levels than those in the mild PD group (Table 4).
表4验证集轻度PD组与中重度PD组一般资料分析Table 4 General data analysis of the mild PD group and the moderate to severe PD group in the validation set
注:a为t检验;b为卡方检验;c为秩和检验Note: a is t test; b is chi-square test; c is rank sum test
2.5PD患者血清CD73与H&Y分期、UPDRS-Ⅲ评分的相关性分析2.5 Correlation analysis between serum CD73 and H&Y stage and UPDRS-Ⅲ score in patients with PD
经Pearson相关分析可知,PD患者血清CD73水平与H&Y分期和UPDRS-Ⅲ评分呈负相关(P<0.01)(表5)。Pearson correlation analysis showed that serum CD73 levels in PD patients were negatively correlated with H&Y stage and UPDRS-Ⅲ score (P<0.01) (Table 5).
表5相关性分析Table 5 Correlation analysis
上述实施例的说明只是用于理解本发明的方法及其核心思想。应当指出,对于本领域的普通技术人员来说,在不脱离本发明原理的前提下,还可以对本发明进行若干改进和修饰,这些改进和修饰也将落入本发明权利要求的保护范围内。The description of the above embodiments is only for understanding the method of the present invention and its core idea. It should be noted that those of ordinary skill in the art can make several improvements and modifications to the present invention without departing from the principles of the present invention, and these improvements and modifications will also fall within the protection scope of the claims of the present invention.
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