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CN116751307A - Escherichia coli multi-epitope chimeric protein and its application - Google Patents

Escherichia coli multi-epitope chimeric protein and its application Download PDF

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CN116751307A
CN116751307A CN202310381700.9A CN202310381700A CN116751307A CN 116751307 A CN116751307 A CN 116751307A CN 202310381700 A CN202310381700 A CN 202310381700A CN 116751307 A CN116751307 A CN 116751307A
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chimeric protein
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王建华
毛若雨
盆桂红
滕达
杨娜
郝娅
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Feed Research Institute of Chinese Academy of Agricultural Sciences
China Animal Husbandry Industry Co Ltd
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China Animal Husbandry Industry Co Ltd
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Abstract

本发明提供一种大肠杆菌多表位嵌合蛋白及其应用,所述嵌合蛋白以O78血清型大肠杆菌的外膜蛋白OmpA为载体,包含BamA和OmpC的B细胞表位(OmpA‑Fusion);或者,所述嵌合蛋白以O78血清型大肠杆菌的外膜蛋白BamA为载体,包含OmpA和OmpC的B细胞表位(BamA‑Fusion)。本发明的多表位嵌合序列可在大肠杆菌中诱导表达,表达产物具有较高的抗原性,用多表位嵌合蛋白与弗氏佐剂共同免疫小鼠,可刺激小鼠机体产生强烈的免疫反应。本发明提供的亚单位疫苗对大肠杆菌、感染具有很好的免疫保护作用,可用于制备针对大肠杆菌的亚单位疫苗,具有良好的应用前景。The invention provides an Escherichia coli multi-epitope chimeric protein and its application. The chimeric protein uses the outer membrane protein OmpA of Escherichia coli O78 serotype as a carrier and contains B cell epitopes (OmpA-Fusion) of BamA and OmpC. ; Alternatively, the chimeric protein uses the outer membrane protein BamA of Escherichia coli O78 serotype as a carrier and contains the B cell epitopes of OmpA and OmpC (BamA-Fusion). The multi-epitope chimeric sequence of the present invention can be induced to express in Escherichia coli, and the expression product has high antigenicity. Using the multi-epitope chimeric protein and Freund's adjuvant to immunize mice together can stimulate the mouse body to produce strong immune response. The subunit vaccine provided by the invention has good immune protection effect against Escherichia coli and infection, can be used to prepare subunit vaccines against Escherichia coli, and has good application prospects.

Description

大肠杆菌多表位嵌合蛋白及其应用Escherichia coli multi-epitope chimeric protein and its application

技术领域Technical field

本发明涉及基因工程技术领域,具体地说,涉及一种大肠杆菌多表位嵌合蛋白及其应用。The present invention relates to the technical field of genetic engineering, specifically to an Escherichia coli multi-epitope chimeric protein and its application.

背景技术Background technique

大肠杆菌(Escherichia coli,E.coli)是多种动物肠道内寄居的条件致病菌。在一定条件下,一些携带致病性因子的大肠杆菌会引起健康动物发生多种局部组织器官感染,如胃肠道感染,尿路感染和脑膜炎等,往往给畜牧养殖业带来巨大的压力和经济损失。目前针对大肠杆菌的主要防治方法是利用抗生素治疗及接种疫苗,但是抗生素的滥用已经引起大肠杆菌广泛的耐药性,因此接种疫苗是一个较理想的途径。然而,大肠杆菌血清型众多,毒力基因的重组等原因使大肠杆菌疫苗的研制面临严峻的考验。此外,许多商品化大肠杆菌疫苗的临床免疫效果不佳,地域局限性明显,大肠杆菌相关疾病的预防仍然十分困难。因此,研发安全、高效的新型大肠杆菌疫苗是近年来的研究热点。Escherichia coli (E.coli) is an opportunistic pathogen that resides in the intestines of various animals. Under certain conditions, some Escherichia coli carrying pathogenic factors can cause a variety of local tissue and organ infections in healthy animals, such as gastrointestinal infections, urinary tract infections, and meningitis, which often bring huge pressure to the animal husbandry industry. and economic losses. At present, the main prevention and control methods for E. coli are antibiotic treatment and vaccination. However, the abuse of antibiotics has caused widespread drug resistance in E. coli, so vaccination is an ideal way. However, the development of E. coli vaccines faces severe challenges due to numerous serotypes of E. coli and the recombination of virulence genes. In addition, many commercialized E. coli vaccines have poor clinical immune effects and obvious geographical limitations, making the prevention of E. coli-related diseases still very difficult. Therefore, the development of safe and efficient new E. coli vaccines has been a research hotspot in recent years.

多表位疫苗是一种基于目标抗原表位氨基酸序列设计的新型亚单位疫苗,相较于传统疫苗具有安全无毒、稳定可控等优势,可以直接刺激机体产生特异性免疫反应,符合未来疫苗的发展方向而日益受到人们的关注。相比较于传统疫苗,基于表位设计的疫苗靶向性强,抗体定位准确,免疫机理明确,但对抗原表位的分析及设计要求较高,因此要想成功开发表位疫苗首先要筛选出合适的抗原表位。抗原表位(epitope)包括T细胞表位和B细胞表位,是抗原分子中决定抗原特异性的基团,它能够与T细胞受体(T cell receptor,TCR)或B细胞受体(B cell receptor,BCR)特异性结合,刺激机体产生免疫反应,形成对病原菌的免疫力。T细胞表位由细胞内的主要组织相容性复合物(major histocompatibilitycomplex,MHC)I或II分子识别,并递呈到细胞表面,然后分别被CD8+T细胞和CD4+T细胞的TCR识别,刺激机体产生细胞免疫,主要应用于病毒及胞内寄生菌的防治。B细胞表位被BCR识别,也能被MHC II类分子递呈,其与MHC II分子结合后的复合物在细胞表面被BCR识别,属于可溶性的蛋白抗原构象决定簇。B细胞表位刺激机体产生抗体,主要在体液中发挥免疫功能。IEDB、DiscoTope、BepiPred、ABCPred等在线预测工具常被人们用于预测蛋白的抗原表位,B细胞表位的预测需综合抗原蛋白理化性质、结构特点、统计显著性度量等指标进行表位预测,如一级序列中的氨基酸柔性(Flexibility)、表面易近性(Surfaceaccessibility)、局部亲水性(Local hydrophilicity)、抗原性、突出指数(Protrusionindex)以及二级结构的转角(Turn)与环(Loop)结构等,且预测的结果无法保证100%准确,需要在实验中进行进一步验证。Multi-epitope vaccine is a new subunit vaccine designed based on the amino acid sequence of the target antigen epitope. Compared with traditional vaccines, it has the advantages of safety, non-toxic, stable and controllable, and can directly stimulate the body to produce specific immune responses, which is in line with future vaccines. The development direction has attracted increasing attention. Compared with traditional vaccines, vaccines based on epitope design have strong targeting, accurate antibody positioning, and clear immune mechanisms. However, the analysis and design of antigenic epitopes require higher requirements. Therefore, in order to successfully develop epitope vaccines, we must first screen out Suitable epitopes. Antigen epitope (epitope) includes T cell epitope and B cell epitope. It is a group in the antigen molecule that determines the antigen specificity. It can interact with T cell receptor (T cell receptor, TCR) or B cell receptor (B cell receptor). Cell receptor (BCR) specifically binds to stimulate the body to produce an immune response and form immunity to pathogenic bacteria. T cell epitopes are recognized by intracellular major histocompatibility complex (MHC) I or II molecules and presented to the cell surface, and then recognized by the TCR of CD8+ T cells and CD4+ T cells respectively. Stimulates the body to produce cellular immunity and is mainly used in the prevention and treatment of viruses and intracellular parasitic bacteria. B cell epitopes are recognized by BCR and can also be presented by MHC class II molecules. The complex after binding to MHC II molecules is recognized by BCR on the cell surface and is a soluble protein antigen conformational determinant. B cell epitopes stimulate the body to produce antibodies, which mainly exert immune functions in body fluids. Online prediction tools such as IEDB, DiscoTope, BepiPred, and ABCPred are often used to predict protein epitopes. The prediction of B cell epitopes requires the integration of physical and chemical properties, structural characteristics, statistical significance measures and other indicators of the antigen protein for epitope prediction. Such as amino acid flexibility (Flexibility), surface accessibility (Surface accessibility), local hydrophilicity (Local hydrophilicity), antigenicity, protrusion index (Protrusion index) in the primary sequence, as well as the turns and loops of the secondary structure Structure, etc., and the predicted results cannot be guaranteed to be 100% accurate and need to be further verified in experiments.

单个抗原表位分子量低使得免疫原性不好,缺少稳定的立体构像,容易被降解。多次免疫虽能起到较好的免疫效果却容易导致动物产生免疫耐受。因此,需要将多个表位用基因工程技术串联起来设计成多表位疫苗,将同一蛋白的不同功能区或者不同功能的蛋白进行连接,从而增强抗原的免疫原性和稳定性。目前设计多表位疫苗主要有4种常用的串联方式:抗原表位线性串联、抗原表位与载体偶联、多抗原肽和多脂肽多表位疫苗。抗原表位线性串联是将预测到的多个抗原表位直接首尾串联而成,这种串联方式可有效克服了单个表位免疫原性弱,容易被降解的缺陷。The low molecular weight of a single antigenic epitope makes it poorly immunogenic, lacks a stable three-dimensional conformation, and is easily degraded. Although multiple immunizations can achieve better immune effects, they can easily lead to immune tolerance in animals. Therefore, multiple epitopes need to be connected in series using genetic engineering technology to design a multi-epitope vaccine, and different functional regions of the same protein or proteins with different functions can be connected to enhance the immunogenicity and stability of the antigen. Currently, there are four commonly used tandem methods for designing multi-epitope vaccines: antigen epitope linear tandem, antigen epitope and carrier coupling, multi-antigen peptide and polylipopeptide multi-epitope vaccines. Antigen epitope linear concatenation is formed by directly concatenating multiple predicted antigen epitopes head to tail. This concatenation method can effectively overcome the shortcomings of a single epitope that is weak in immunogenicity and easily degraded.

多表位疫苗具有独特的优越性,如抗原性高、多价、免疫效果好、安全性好等,已经被广泛运用于包括细菌感染、病毒性疾病、寄生虫感染、抗肿瘤方面等相关疾病的防治研究中。Multi-epitope vaccines have unique advantages, such as high antigenicity, multivalency, good immune effect, and good safety. They have been widely used in related diseases including bacterial infections, viral diseases, parasitic infections, and anti-tumor aspects. in prevention and control research.

发明内容Contents of the invention

本发明的目的是提供一种大肠杆菌多表位嵌合蛋白及其应用。The object of the present invention is to provide an Escherichia coli multi-epitope chimeric protein and its application.

本发明基于大肠杆菌CAU0768(O78)外膜蛋白设计了多表位嵌合序列,并利用该多表位嵌合蛋白构建了亚单位疫苗。The present invention designs a multi-epitope chimeric sequence based on the outer membrane protein of Escherichia coli CAU0768 (O78), and uses the multi-epitope chimeric protein to construct a subunit vaccine.

为了实现本发明目的,第一方面,本发明提供一种大肠杆菌多表位嵌合蛋白,所述嵌合蛋白以O78血清型大肠杆菌的外膜蛋白OmpA为载体,包含有外膜蛋白BamA的B细胞表位和外膜蛋白OmpC的B细胞表位(记为OmpA-Fusion);或者,In order to achieve the purpose of the present invention, in the first aspect, the present invention provides an Escherichia coli multi-epitope chimeric protein. The chimeric protein uses the outer membrane protein OmpA of Escherichia coli O78 serotype as a carrier and contains the outer membrane protein BamA. B cell epitope and B cell epitope of outer membrane protein OmpC (denoted OmpA-Fusion); or,

所述嵌合蛋白以O78血清型大肠杆菌的外膜蛋白BamA为载体,包含有外膜蛋白OmpA的B细胞表位和外膜蛋白OmpC的B细胞表位(记为BamA-Fusion)。The chimeric protein uses the outer membrane protein BamA of Escherichia coli O78 serotype as a carrier, and contains the B cell epitope of the outer membrane protein OmpA and the B cell epitope of the outer membrane protein OmpC (denoted as BamA-Fusion).

本发明中,O78血清型大肠杆菌外膜蛋白OmpA的B细胞表位序列如SEQ ID NO:1-5所示;In the present invention, the B cell epitope sequence of OmpA, the outer membrane protein of Escherichia coli O78 serotype, is shown in SEQ ID NO: 1-5;

外膜蛋白BamA的B细胞表位序列如SEQ ID NO:6-9所示;The B cell epitope sequence of outer membrane protein BamA is shown in SEQ ID NO: 6-9;

外膜蛋白OmpC的B细胞表位序列如SEQ ID NO:10-12所示。The B cell epitope sequence of outer membrane protein OmpC is shown in SEQ ID NO: 10-12.

进一步地,所述嵌合蛋白以O78血清型大肠杆菌的外膜蛋白OmpA为载体,外膜蛋白BamA的B细胞表位和外膜蛋白OmpC的B细胞表位连接在OmpA的N端或通过柔性Linker(如GGGS)连接在OmpA的C端。Further, the chimeric protein uses the outer membrane protein OmpA of Escherichia coli O78 serotype as a carrier, and the B cell epitope of the outer membrane protein BamA and the B cell epitope of the outer membrane protein OmpC are connected to the N-terminus of OmpA or through a flexible Linker (such as GGGS) is connected to the C-terminus of OmpA.

进一步地,所述嵌合蛋白以O78血清型大肠杆菌的外膜蛋白BamA为载体,外膜蛋白OmpA的B细胞表位和外膜蛋白OmpC的B细胞表位通过柔性Linker(如GGGS)连接在BamA的C端。Further, the chimeric protein uses the outer membrane protein BamA of Escherichia coli O78 serotype as a carrier, and the B cell epitope of the outer membrane protein OmpA and the B cell epitope of the outer membrane protein OmpC are connected through a flexible Linker (such as GGGS). C-terminus of BamA.

在本发明的一个具体实施方式中,嵌合蛋白OmpA-Fusion包含如下的氨基酸序列或由其组成:In a specific embodiment of the invention, the chimeric protein OmpA-Fusion contains or consists of the following amino acid sequence:

a)、SEQ ID NO:13所示的氨基酸序列;或a), the amino acid sequence shown in SEQ ID NO:13; or

b)、在a)的N端和/或C端连接标签得到的氨基酸序列;或b), the amino acid sequence obtained by connecting a tag to the N-terminus and/or C-terminus of a); or

c)、a)或b)的氨基酸序列经取代、缺失和/或增加一个或多个氨基酸得到的具有相同功能的蛋白。A protein with the same function obtained by substituting, deleting and/or adding one or more amino acids to the amino acid sequence of c), a) or b).

在本发明的另一个具体实施方式中,嵌合蛋白BamA-Fusion包含如下的氨基酸序列或由其组成:In another specific embodiment of the invention, the chimeric protein BamA-Fusion contains or consists of the following amino acid sequence:

A)、SEQ ID NO:14所示的氨基酸序列;或A), the amino acid sequence shown in SEQ ID NO:14; or

B)、在A)的N端和/或C端连接标签得到的氨基酸序列;或B), the amino acid sequence obtained by connecting a tag to the N-terminus and/or C-terminus of A); or

C)、A)或B)的氨基酸序列经取代、缺失和/或增加一个或多个氨基酸得到的具有相同功能的蛋白。A protein with the same function obtained by substituting, deleting and/or adding one or more amino acids to the amino acid sequence of C), A) or B).

第二方面,本发明提供编码所述嵌合蛋白的核酸分子或含有所述核酸分子的生物材料;其中,所述生物材料为重组DNA、表达盒、转座子、质粒载体、病毒载体、工程菌或转基因细胞系。In a second aspect, the present invention provides nucleic acid molecules encoding the chimeric protein or biological materials containing the nucleic acid molecules; wherein the biological materials are recombinant DNA, expression cassettes, transposons, plasmid vectors, viral vectors, engineering bacteria or transgenic cell lines.

第三方面,本发明提供一种免疫原性组合物,其包含所述的嵌合蛋白。In a third aspect, the present invention provides an immunogenic composition comprising the chimeric protein.

第四方面,本发明提供一种大肠杆菌亚单位疫苗,其包含所述的免疫原性组合物和药学上可接受的载体。任选包含佐剂。In a fourth aspect, the present invention provides an E. coli subunit vaccine, which includes the immunogenic composition and a pharmaceutically acceptable carrier. Adjuvants are optionally included.

第五方面,本发明提供所述嵌合蛋白的以下任一应用:In a fifth aspect, the present invention provides any of the following applications of the chimeric protein:

(1)用于制备大肠杆菌亚单位疫苗;(1) Used to prepare E. coli subunit vaccine;

(2)用于制备检测大肠杆菌感染的试剂或试剂盒;(2) Preparation of reagents or kits for detecting E. coli infection;

(3)用于大肠杆菌感染的诊断。(3) For the diagnosis of E. coli infection.

借由上述技术方案,本发明至少具有下列优点及有益效果:Through the above technical solutions, the present invention has at least the following advantages and beneficial effects:

(一)本发明通过柔性的连接肽Linker将抗原表位串联在以外膜蛋白OmpA或BamA为载体蛋白的C端或N端,多个B细胞表位的嵌入可以增强其抗原性,嵌合蛋白中的多个抗原表位能分别形成正确的空间结构,从而更好地发挥各自的生物学活性,防止蛋白之间在空间构象上的相互干扰。(1) The present invention connects the antigenic epitopes in series to the outer membrane protein OmpA or BamA as the C-terminal or N-terminal of the carrier protein through a flexible connecting peptide Linker. The embedding of multiple B cell epitopes can enhance its antigenicity. The chimeric protein Multiple antigenic epitopes in the protein can form correct spatial structures respectively, thereby better exerting their respective biological activities and preventing mutual interference between proteins in spatial conformation.

(二)本发明的多表位嵌合序列可在大肠杆菌中进行诱导表达,表达产物具有较高的抗原性。将本发明的多表位嵌合蛋白与弗氏佐剂共同免疫小鼠,能够刺激小鼠产生强烈的免疫反应。二次免疫后血清中产生了高水平的抗体滴度,在大肠杆菌CAU0768(O78)最低致死剂量浓度的攻毒下,多表位嵌合蛋白免疫组均达到100%的保护率。(2) The multi-epitope chimeric sequence of the present invention can be induced and expressed in E. coli, and the expression product has high antigenicity. The multi-epitope chimeric protein of the present invention and Freund's adjuvant are used to immunize mice together, which can stimulate the mice to produce a strong immune response. After the secondary immunization, a high level of antibody titer was produced in the serum. When challenged with the lowest lethal dose concentration of E. coli CAU0768 (O78), the multi-epitope chimeric protein immunized group achieved 100% protection rate.

(三)本发明提供的亚单位疫苗对大肠杆菌、感染具有很好的免疫保护作用,可用于制备针对大肠杆菌的亚单位疫苗,具有良好的应用前景。(3) The subunit vaccine provided by the present invention has a good immune protective effect against E. coli and infections, can be used to prepare subunit vaccines against E. coli, and has good application prospects.

附图说明Description of the drawings

图1为本发明较佳实施例中多表位嵌合蛋白纯化后SDS-PAGE图。Figure 1 is an SDS-PAGE diagram after purification of the multi-epitope chimeric protein in the preferred embodiment of the present invention.

图2为本发明较佳实施例中多表位嵌合蛋白免疫小鼠血清抗体滴度。图中,****表示不同处理组之间的差异具有统计学意义,****P<0.0001。ns表示统计学对照基准。Figure 2 shows the serum antibody titers of mice immunized with the multi-epitope chimeric protein in the preferred embodiment of the present invention. In the figure, **** indicates that the difference between different treatment groups is statistically significant, ****P<0.0001. ns represents the statistical comparison benchmark.

图3为本发明较佳实施例中多表位嵌合蛋白免疫小鼠血清抗体亚型。Figure 3 shows the serum antibody subtypes of mice immunized with multi-epitope chimeric proteins in a preferred embodiment of the present invention.

图4为本发明较佳实施例中多表位嵌合蛋白免疫小鼠血清交叉反应。Figure 4 shows the cross-reaction of the serum of mice immunized with the multi-epitope chimeric protein in the preferred embodiment of the present invention.

图5为本发明较佳实施例中多表位嵌合蛋白免疫小鼠攻毒脏器菌落计数。图中,*、**和***表示不同处理组之间的差异具有统计学意义,*表示P<0.05,**表示P<0.01,***表示P<0.001。ns表示统计学对照基准。Figure 5 shows the colony count of the infected organs of mice immunized with the multi-epitope chimeric protein in the preferred embodiment of the present invention. In the figure, *, ** and *** indicate that the differences between different treatment groups are statistically significant, * indicates P<0.05, ** indicates P<0.01, and *** indicates P<0.001. ns represents the statistical comparison benchmark.

图6为本发明较佳实施例中多表位嵌合蛋白免疫小鼠攻毒保护率。注:BamA-Fusion+弗氏佐剂组与无免疫对照组的曲线重合。Figure 6 shows the protection rate of mice immunized with the multi-epitope chimeric protein in the preferred embodiment of the present invention. Note: The curves of the BamA-Fusion+Freund's adjuvant group and the non-immune control group overlap.

具体实施方式Detailed ways

以下实施例用于说明本发明,但不用来限制本发明的范围。若未特别指明,实施例中所用的技术手段为本领域技术人员所熟知的常规手段,所用原料均为市售商品。实施例1多表位嵌合序列的构建The following examples are used to illustrate the invention but are not intended to limit the scope of the invention. Unless otherwise specified, the technical means used in the examples are conventional means well known to those skilled in the art, and the raw materials used are all commercially available products. Example 1 Construction of multi-epitope chimeric sequences

1、B细胞抗原表位预测1. B cell epitope prediction

将大肠杆菌O78 3个外膜蛋白OmpA、BamA和OmpC的氨基酸序列通过Bepipred、BCPred和COBEpro在线预测网站分析B细胞线性表位,结合3种预测方法及免疫信息学参数,筛选合适的B细胞表位,采用不同预测方法结果重叠部分以增加预测可信度(SEQ ID NO:1~12)。分别以OmpA和BamA的抗原性区域为骨架,通过linker肽在C端连接其余两个蛋白候选的B细胞表位,构建含有多个B细胞表位的多表位融合蛋白,命名为OmpA-Fusion和BamA-Fusion。The amino acid sequences of the three outer membrane proteins OmpA, BamA and OmpC of Escherichia coli O78 were analyzed through the Bepipred, BCPred and COBEpro online prediction websites to analyze the B cell linear epitopes. The three prediction methods and immunoinformatics parameters were combined to screen the appropriate B cell epitopes. bit, using the overlapping parts of the results of different prediction methods to increase the credibility of the prediction (SEQ ID NO: 1 ~ 12). Using the antigenic regions of OmpA and BamA as the backbone, the candidate B cell epitopes of the other two proteins were connected at the C terminus through a linker peptide to construct a multi-epitope fusion protein containing multiple B cell epitopes, named OmpA-Fusion. and BamA-Fusion.

2、多表位嵌合基因的合成2. Synthesis of multi-epitope chimeric genes

由生工生物工程(上海)有限公司,采用全基因合成的方法进行人工化学合成,并克隆到PUC57载体中,命名为PUC57-OmpA-Fusion及PUC57-BamA-Fusion。Sangon Bioengineering (Shanghai) Co., Ltd. used a total gene synthesis method to conduct artificial chemical synthesis and cloned it into the PUC57 vector, named PUC57-OmpA-Fusion and PUC57-BamA-Fusion.

3、多表位嵌合蛋白二级结构分析3. Secondary structure analysis of multi-epitope chimeric proteins

利用ExPASy网站中的ProtParam对多表位嵌合蛋白氨基酸序列的理化性质进行预测。Use ProtParam in the ExPASy website to predict the physical and chemical properties of the amino acid sequence of the multi-epitope chimeric protein.

4、多表位嵌合蛋白三级结构的预测4. Prediction of the tertiary structure of multi-epitope chimeric proteins

利用分子生物学软件I-TASSER对多表位嵌合蛋白进行三级结构预测,结果表明,在嵌入多个表位后载体能够维持一定的空间结构,构建的多表位嵌合蛋白具有多个表位外显于分子表面,符合多表位嵌合的设计要求。The molecular biology software I-TASSER was used to predict the tertiary structure of the multi-epitope chimeric protein. The results showed that the vector can maintain a certain spatial structure after embedding multiple epitopes, and the constructed multi-epitope chimeric protein has multiple The epitope is exposed on the surface of the molecule, which meets the design requirements of multi-epitope chimerism.

5、多表位嵌合蛋白抗原性分析5. Antigenicity analysis of multi-epitope chimeric proteins

利用分子生物学软件VaxiJen对多表位嵌合蛋白进行抗原性分析,OmpA-Fusion得分为0.9315,BamA-Fusion得分为0.8394,符合多表位蛋白的抗原性要求。The molecular biology software VaxiJen was used to analyze the antigenicity of the multi-epitope chimeric protein. The OmpA-Fusion score was 0.9315 and the BamA-Fusion score was 0.8394, which met the antigenicity requirements of multi-epitope proteins.

O78血清型大肠杆菌外膜蛋白OmpA的B细胞表位序列如SEQ ID NO:1-5所示;The B cell epitope sequence of OmpA, the outer membrane protein of Escherichia coli of O78 serotype, is shown in SEQ ID NO: 1-5;

外膜蛋白BamA的B细胞表位序列如SEQ ID NO:6-9所示;The B cell epitope sequence of outer membrane protein BamA is shown in SEQ ID NO: 6-9;

外膜蛋白OmpC的B细胞表位序列如SEQ ID NO:10-12所示。The B cell epitope sequence of outer membrane protein OmpC is shown in SEQ ID NO: 10-12.

实施例2多表位基因在大肠杆菌中的表达Example 2 Expression of multi-epitope genes in E. coli

1、多表位嵌合序列表达载体的构建1. Construction of multi-epitope chimeric sequence expression vector

用Nco I和Xho I双酶切质粒PUC57-OmpA-Fusion及PUC57-BamA-Fusion,经琼脂糖凝胶电泳后,回收目的片段OmpA-Fusion和BamA-Fusion,在25℃下连入以Nco I和Xho I双酶切的质粒pet-28a(+)中,得到质粒pet-28a(+)-OmpA-Fusion/BamA-Fusion。The plasmids PUC57-OmpA-Fusion and PUC57-BamA-Fusion were double digested with Nco I and Xho I. After agarose gel electrophoresis, the target fragments OmpA-Fusion and BamA-Fusion were recovered and ligated with Nco I at 25°C. From plasmid pet-28a(+) double digested with Xho I, plasmid pet-28a(+)-OmpA-Fusion/BamA-Fusion was obtained.

2、表达载体转化大肠杆菌DH5α2. Transformation of E. coli DH5α with expression vector

将25℃下连接好的10ul体系加入50ul感受态细胞DH5α中,轻轻混合后于冰中放置30min。42℃水浴45s钟后,迅速转入冰中放置2min。加入450ul LB培养基,200r/min,37℃振荡培养60min。分别取200ul,100ul转化液涂在含有Kan(终浓度50μg/ml)的LB琼脂平板培养基上,37℃过夜培养。Add 10ul of the connected system at 25°C to 50ul of competent cells DH5α, mix gently and place in ice for 30 minutes. After 45 seconds in 42°C water bath, quickly transfer to ice and place for 2 minutes. Add 450ul of LB medium, shake at 200r/min, and incubate at 37°C for 60min. Take 200ul and 100ul of the transformation solution and spread them on the LB agar plate medium containing Kan (final concentration 50μg/ml), and culture at 37°C overnight.

3、大肠杆菌阳性克隆的筛选3. Screening of E. coli positive clones

用枪头从单菌落上挑部分菌落,加至30ul无菌水中,混匀。取3ul用作PCR模板,用通用引物进行PCR鉴定。若PCR结果显现特异性条带,选取3-5个阳性菌液,从对应的1ml菌液内取300ul转接含Kan的LB液体培养基,培养至对数期-20℃甘油管保存菌液。剩余菌液送上海生工生物技术公司测序。Use a pipette tip to pick up some colonies from a single colony, add them to 30ul of sterile water, and mix well. Take 3ul as PCR template and use universal primers for PCR identification. If the PCR result shows a specific band, select 3-5 positive bacterial liquids, take 300ul of the corresponding 1ml bacterial liquid, transfer it to LB liquid medium containing Kan, culture it to the logarithmic phase, and store the bacterial liquid in a glycerol tube at -20°C. . The remaining bacterial liquid was sent to Shanghai Sangon Biotechnology Co., Ltd. for sequencing.

4、表达载体转化大肠杆菌BL214. Transformation of E. coli BL21 with expression vector

将测序正确菌液转接至5ml含Kan的LB培养基中,250r/min 37℃培养12h。利用天根质粒提取试剂盒(DP103)进行质粒提取,并用同样的方法将重组质粒转化进入表达菌株BL21中。Transfer the correctly sequenced bacterial solution to 5 ml of LB medium containing Kan, and culture it at 250 r/min and 37°C for 12 hours. The Tiangen plasmid extraction kit (DP103) was used to extract the plasmid, and the recombinant plasmid was transformed into the expression strain BL21 using the same method.

5、大肠杆菌阳性克隆的诱导表达5. Induced expression of E. coli positive clones

取过夜培养的阳性保菌菌液按1%接入含Kan(终浓度50μg/ml)的LB培养基中培养2h以上,至对数中期(OD600=0.6)。向诱导管中加入IPTG使其浓度达到1mmol/L,250r/min,37℃振荡培养6h左右取样。Take the positive bacteria-preserving bacterial liquid cultured overnight and add 1% of it into LB medium containing Kan (final concentration 50 μg/ml) and culture for more than 2 hours to the mid-log phase (OD 600 = 0.6). Add IPTG to the induction tube to reach a concentration of 1 mmol/L, 250 r/min, and incubate at 37°C for about 6 hours with shaking for sampling.

6、表达目的蛋白的SDS-PAGE分析6. SDS-PAGE analysis of expressed target protein

诱导结束后,取1mL菌液,4℃8000rpm离心2min收集菌体,弃上清,用100ul PBS重悬菌体,100ul 2×SDS-PAGE上样缓冲液,100℃煮沸10min,室温12000r/min离心5min,取上清利用SDS-PAGE进行检测。如图1所示,OmpA-Fusion(SEQ ID NO:13)和BamA-Fusion(SEQID NO:14)的分子量均为50kDa左右,与理论值相符。After induction, take 1 mL of bacterial solution, centrifuge at 8000 rpm for 2 minutes at 4°C to collect the cells, discard the supernatant, resuspend the cells in 100ul PBS, 100ul 2×SDS-PAGE loading buffer, boil at 100°C for 10 minutes, room temperature 12000r/min Centrifuge for 5 minutes and take the supernatant for detection by SDS-PAGE. As shown in Figure 1, the molecular weights of OmpA-Fusion (SEQ ID NO: 13) and BamA-Fusion (SEQ ID NO: 14) are both about 50 kDa, which is consistent with the theoretical value.

实施例3多表位亚单位疫苗的小鼠免疫实验Example 3 Mouse immunization experiment of multi-epitope subunit vaccine

1、小鼠免疫程序1. Mouse immunization program

取6-8周龄雌性BALB/c小鼠30只,分为三组,为PBS+佐剂组,OmpA-Fusion-佐剂组,BamA-Fusion+佐剂组,每组10只。共免疫三次,一免和二免间隔21d,二免和三免间隔14d,每次免疫亚单位疫苗25μg/只。初免混以弗氏完全佐剂,皮下注射;二免和三免混以弗氏不完全佐剂,腹腔注射。分别于免疫前和每次免疫后5d尾静脉采血,进行血清ELISA抗体分析。Thirty female BALB/c mice aged 6-8 weeks were divided into three groups: PBS+adjuvant group, OmpA-Fusion-adjuvant group, and BamA-Fusion+adjuvant group, with 10 mice in each group. A total of three immunizations were carried out, with the interval between the first and second immunizations being 21 days, and the interval between the second and third immunizations being 14 days, with 25 μg of subunit vaccine per animal. The first dose was mixed with Freund's complete adjuvant and injected subcutaneously; the second and third doses were mixed with Freund's incomplete adjuvant and injected intraperitoneally. Blood was collected from the tail vein before immunization and 5 days after each immunization, and serum ELISA antibody analysis was performed.

2、免疫小鼠血清ELISA抗体滴度检测2. ELISA antibody titer detection in serum of immunized mice

采用间接ELISA方法测定免疫小鼠血清中特异性IgG抗体水平。具体方法如下:The indirect ELISA method was used to determine the specific IgG antibody levels in the serum of immunized mice. The specific method is as follows:

包被:将外膜蛋白溶于蛋白包被液至终浓度为2ug/ml,100ul/孔加至96孔板,4℃过夜,100ul PBST/孔PBST洗涤4次,每次5min,拍干。Coating: Dissolve the outer membrane protein in the protein coating solution to a final concentration of 2ug/ml, add 100ul/well to a 96-well plate, incubate at 4°C overnight, wash 4 times with 100ul PBST/well PBST, 5 minutes each time, pat dry.

封闭:将封闭液200ul/孔加至96孔板,37℃封闭2h,PBST洗涤4次,每次5min,拍干。Blocking: Add 200ul/well of blocking solution to the 96-well plate, block for 2 hours at 37°C, wash 4 times with PBST, 5 minutes each time, and pat dry.

加待测血清样品:一免血清以1:100,二免及三免血清以1:1000为起始稀释浓度,3倍梯度稀释,100ul/孔加至96孔板,37℃孵育1.5h,PBST洗涤4次,每次5min,拍干。Add the serum sample to be tested: 1:100 for the primary immune serum, 1:1000 for the secondary immune serum and 1:1000 for the third immune serum, 3-fold gradient dilution, add 100ul/well to a 96-well plate, and incubate at 37°C for 1.5 hours. Wash 4 times with PBST, 5 minutes each time, and pat dry.

加二抗:取辣根酶标记的羊抗鼠igG(igG特异二抗)按1:5000倍稀释后,100ul/孔加至96孔板,37℃孵育30min,PBST洗涤4次,每次5min,拍干。Add secondary antibody: Dilute horseradish-labeled goat anti-mouse igG (igG-specific secondary antibody) 1:5000, add 100ul/well to a 96-well plate, incubate at 37°C for 30 minutes, wash 4 times with PBST, 5 minutes each time , pat dry.

显色:按100ul/孔加入显色剂TMB,37℃显色15-30min。终止:加入终止液50ul/孔终止反应。Color development: Add 100ul/well of chromogen TMB and develop color at 37°C for 15-30 minutes. Termination: Add 50ul of stop solution/well to terminate the reaction.

读数:在630nm为参比波长下450nm测定各孔OD值,以与阴性对照孔OD值的比值(P/N)大于2.1为限,作为判断确定效价的临界点。结果如图2所示,两种蛋白与弗氏佐剂共同免疫均能刺激小鼠产生强烈的免疫反应。Reading: Measure the OD value of each well at 450nm with 630nm as the reference wavelength, and limit the ratio (P/N) to the OD value of the negative control well to be greater than 2.1 as the critical point for determining the potency. The results are shown in Figure 2. Co-immunization with both proteins and Freund's adjuvant can stimulate a strong immune response in mice.

3、免疫小鼠血清ELISA抗体亚型检测3. ELISA antibody subtype detection in serum of immunized mice

除所用二抗为辣根酶标记的羊抗鼠igG1,igG2a,igG2b,igG3,igM和igA外,其余方法同抗体滴度检测。结果如图3所示,检测到免疫小鼠血清中的抗体主要为igG1,igG2a,igG2b和igM,表明既有体液免疫反应(Th2)也有细胞介导的免疫反应(Th1)。Except that the secondary antibodies used were horseradish-labeled goat anti-mouse igG1, igG2a, igG2b, igG3, igM and igA, the remaining methods were the same as the antibody titer detection. The results are shown in Figure 3. The antibodies detected in the serum of immunized mice were mainly igG1, igG2a, igG2b and igM, indicating that there was both humoral immune response (Th2) and cell-mediated immune response (Th1).

4、免疫小鼠血清ELISA交叉反应检测4. ELISA cross-reaction detection of immunized mouse serum

固定:将固定液150ul/孔加至酶标板,置于37℃1h;PBST 150ul/孔洗涤板4次,每次5min,拍干。加入PBS重悬的菌体抗原悬浮液(108CFU/mL)100ul/孔,置于37℃直至风干;100ul PBST洗液洗涤4次,洗去未结合的抗原,每次5min,拍干。除待测血清样品以1:27000为稀释浓度,其余步骤与抗体滴度检测相同。结果如图4所示,抗血清对不同血清型的大肠杆菌以及志贺氏菌具有一定的交叉保护作用。Fixation: Add 150ul/well of fixative to the enzyme plate and place at 37°C for 1 hour; wash the plate 4 times with 150ul/well of PBST, 5min each time, and pat dry. Add 100ul/well of bacterial antigen suspension (10 8 CFU/mL) resuspended in PBS and place at 37°C until air-dried; wash 4 times with 100ul PBST washing solution to remove unbound antigen, 5 minutes each time, and pat dry. Except that the serum sample to be tested is diluted at 1:27000, the remaining steps are the same as those for antibody titer detection. The results are shown in Figure 4. The antiserum has a certain cross-protective effect on different serotypes of Escherichia coli and Shigella.

5、大肠杆菌攻毒脏器荷菌量5. E. coli bacteria load in infected organs

过夜活化大肠杆菌CAU0768(O78),按1%转接并培养至对数期。于三免后第14d,分别对免疫组及空白对照组小鼠腹腔注射最低致死剂量的对数期大肠杆菌。在攻毒后6h将小鼠安乐死并取心、肝、脾、肺、肾进行菌落计数。结果如图5所示,在最低致死剂量攻毒下,多表位嵌合蛋白免疫组的脏器荷菌量均显著低于未免疫小鼠脏器的荷菌量。E. coli CAU0768 (O78) was activated overnight, transferred at 1% and cultured to the logarithmic phase. On the 14th day after the third immunization, the mice in the immune group and the blank control group were intraperitoneally injected with the lowest lethal dose of log-phase E. coli. The mice were euthanized 6 hours after the challenge, and the hearts, livers, spleens, lungs, and kidneys were harvested for bacterial colony counting. The results are shown in Figure 5. Under the lowest lethal dose challenge, the bacterial load in the organs of the multi-epitope chimeric protein immunized group was significantly lower than that of the organs of unimmunized mice.

6、大肠杆菌攻毒保护率6. E. coli challenge protection rate

过夜活化大肠杆菌CAU0768(O78),按1%转接并培养至对数期。于三免后第14d,分别对免疫组及空白对照组小鼠腹腔注射最低致死剂量的对数期大肠杆菌。每日监测小鼠死亡情况并记录,统计小鼠死亡率,共观测7d。如图6所示,在最低致死剂量攻毒下,未免疫小鼠24h内陆续死亡,佐剂组存活率为50%,多表位嵌合蛋白免疫组存活率为100%。E. coli CAU0768 (O78) was activated overnight, transferred at 1% and cultured to the logarithmic phase. On the 14th day after the third immunization, the mice in the immune group and the blank control group were intraperitoneally injected with the lowest lethal dose of log-phase E. coli. The death of mice was monitored and recorded every day, and the mortality rate of mice was counted for a total of 7 days. As shown in Figure 6, under the lowest lethal dose challenge, unimmunized mice died within 24 hours. The survival rate of the adjuvant group was 50%, and the survival rate of the multi-epitope chimeric protein immunization group was 100%.

以上实验结果表明,本发明提供的新型大肠杆菌外膜蛋白多表位嵌合序列可在大肠杆菌中进行原核诱导表达,表达产物具有免疫原性且可被其免疫小鼠血清中的抗体所识别。载体能够维持自身原本的空间结构且嵌合的表位间二级结构的相互影响较少,并且具有较高的抗原性,同时有多个表位外显于分子表面,符合多表位的设计要求,有望成为较好的免疫原。小鼠免疫实验表明,以多表位嵌合蛋白为亚单位疫苗不仅可以刺激小鼠机体产生特异性体液免疫,同时还可以产生特异性细胞免疫,对大肠杆菌感染具有很好的保护率。体外实验表明该多表位嵌合蛋白与其他大肠杆菌以及志贺氏菌也有一定的交叉保护反应。The above experimental results show that the novel E. coli outer membrane protein multi-epitope chimeric sequence provided by the present invention can be expressed in prokaryotic induction in E. coli, and the expression product is immunogenic and can be recognized by antibodies in the serum of immunized mice. . The vector can maintain its original spatial structure and has less secondary structure interaction between chimeric epitopes, and has high antigenicity. At the same time, multiple epitopes are exposed on the surface of the molecule, which is consistent with the design of multi-epitope. requirements and is expected to become a better immunogen. Mouse immunization experiments show that the subunit vaccine using multi-epitope chimeric protein can not only stimulate the mouse body to produce specific humoral immunity, but also produce specific cellular immunity, which has a good protection rate against E. coli infection. In vitro experiments show that the multi-epitope chimeric protein also has a certain cross-protective reaction with other Escherichia coli and Shigella.

本发明所设计的新型大肠杆菌多表位嵌合蛋白具有较高的抗原性,可用于大肠杆菌以及志贺氏菌亚单位疫苗的制备,具有良好的发展前景。The novel Escherichia coli multi-epitope chimeric protein designed in the present invention has high antigenicity, can be used for the preparation of Escherichia coli and Shigella subunit vaccines, and has good development prospects.

虽然,上文中已经用一般性说明及具体实施方案对本发明作了详尽的描述,但在本发明基础上,可以对之做一些修改或改进,这对本领域技术人员而言是显而易见的。因此,在不偏离本发明精神的基础上所做的这些修改或改进,均属于本发明要求保护的范围。Although the present invention has been described in detail with general descriptions and specific embodiments above, it is obvious to those skilled in the art that some modifications or improvements can be made based on the present invention. Therefore, these modifications or improvements made without departing from the spirit of the present invention all fall within the scope of protection claimed by the present invention.

Claims (10)

1.大肠杆菌多表位嵌合蛋白,其特征在于,所述嵌合蛋白以O78血清型大肠杆菌的外膜蛋白OmpA为载体,包含有外膜蛋白BamA的B细胞表位和外膜蛋白OmpC的B细胞表位;或者,1. Escherichia coli multi-epitope chimeric protein, characterized in that the chimeric protein uses the outer membrane protein OmpA of Escherichia coli O78 serotype as a carrier, and contains the B cell epitope of the outer membrane protein BamA and the outer membrane protein OmpC B cell epitope; or, 所述嵌合蛋白以O78血清型大肠杆菌的外膜蛋白BamA为载体,包含有外膜蛋白OmpA的B细胞表位和外膜蛋白OmpC的B细胞表位。The chimeric protein uses the outer membrane protein BamA of Escherichia coli O78 serotype as a carrier, and contains the B cell epitope of the outer membrane protein OmpA and the B cell epitope of the outer membrane protein OmpC. 2.根据权利要求1所述的嵌合蛋白,其特征在于,外膜蛋白OmpA的B细胞表位序列如SEQID NO:1-5所示;2. The chimeric protein according to claim 1, characterized in that the B cell epitope sequence of outer membrane protein OmpA is shown in SEQ ID NO: 1-5; 外膜蛋白BamA的B细胞表位序列如SEQ ID NO:6-9所示;The B cell epitope sequence of outer membrane protein BamA is shown in SEQ ID NO: 6-9; 外膜蛋白OmpC的B细胞表位序列如SEQ ID NO:10-12所示。The B cell epitope sequence of outer membrane protein OmpC is shown in SEQ ID NO: 10-12. 3.根据权利要求2所述的嵌合蛋白,其特征在于,所述嵌合蛋白以O78血清型大肠杆菌的外膜蛋白OmpA为载体,外膜蛋白BamA的B细胞表位和外膜蛋白OmpC的B细胞表位连接在OmpA的N端或通过柔性Linker连接在OmpA的C端。3. The chimeric protein according to claim 2, characterized in that the chimeric protein uses the outer membrane protein OmpA of O78 serotype Escherichia coli as a carrier, the B cell epitope of the outer membrane protein BamA and the outer membrane protein OmpC. The B cell epitope is connected to the N-terminus of OmpA or connected to the C-terminus of OmpA through a flexible linker. 4.根据权利要求2所述的嵌合蛋白,其特征在于,所述嵌合蛋白以O78血清型大肠杆菌的外膜蛋白BamA为载体,外膜蛋白OmpA的B细胞表位和外膜蛋白OmpC的B细胞表位通过柔性Linker连接在BamA的C端。4. The chimeric protein according to claim 2, characterized in that the chimeric protein uses the outer membrane protein BamA of Escherichia coli O78 serotype as a carrier, the B cell epitope of the outer membrane protein OmpA and the outer membrane protein OmpC. The B cell epitope is connected to the C-terminus of BamA through a flexible linker. 5.根据权利要求3或4所述的嵌合蛋白,其特征在于,所述柔性Linker为GGGS。5. The chimeric protein according to claim 3 or 4, characterized in that the flexible Linker is GGGS. 6.根据权利要求5所述的嵌合蛋白,其特征在于,所述嵌合蛋白包含如下的氨基酸序列或由其组成:6. The chimeric protein according to claim 5, characterized in that the chimeric protein comprises or consists of the following amino acid sequence: a)、SEQ ID NO:13所示的氨基酸序列;或a), the amino acid sequence shown in SEQ ID NO:13; or b)、在a)的N端和/或C端连接标签得到的氨基酸序列;或b), the amino acid sequence obtained by connecting a tag to the N-terminus and/or C-terminus of a); or c)、a)或b)的氨基酸序列经取代、缺失和/或增加一个或多个氨基酸得到的具有相同功能的蛋白;或者,A protein with the same function obtained by substituting, deleting and/or adding one or more amino acids to the amino acid sequence of c), a) or b); or, A)、SEQ ID NO:14所示的氨基酸序列;或A), the amino acid sequence shown in SEQ ID NO:14; or B)、在A)的N端和/或C端连接标签得到的氨基酸序列;或B), the amino acid sequence obtained by connecting a tag to the N-terminus and/or C-terminus of A); or C)、A)或B)的氨基酸序列经取代、缺失和/或增加一个或多个氨基酸得到的具有相同功能的蛋白。A protein with the same function obtained by substituting, deleting and/or adding one or more amino acids to the amino acid sequence of C), A) or B). 7.编码权利要求1-6任一项所述嵌合蛋白的核酸分子或含有所述核酸分子的生物材料;其中,所述生物材料为重组DNA、表达盒、转座子、质粒载体、病毒载体、工程菌或转基因细胞系。7. Nucleic acid molecules encoding the chimeric protein of any one of claims 1-6 or biological materials containing the nucleic acid molecules; wherein the biological materials are recombinant DNA, expression cassettes, transposons, plasmid vectors, viruses Vectors, engineered bacteria or transgenic cell lines. 8.一种免疫原性组合物,其特征在于,其包含权利要求1-6任一项所述的嵌合蛋白。8. An immunogenic composition, characterized in that it contains the chimeric protein according to any one of claims 1-6. 9.大肠杆菌亚单位疫苗,其特征在于,其包含权利要求8所述的免疫原性组合物和药学上可接受的载体。9. Escherichia coli subunit vaccine, characterized in that it contains the immunogenic composition of claim 8 and a pharmaceutically acceptable carrier. 10.权利要求1-6任一项所述嵌合蛋白的以下任一应用:10. Any of the following applications of the chimeric protein according to any one of claims 1-6: (1)用于制备大肠杆菌亚单位疫苗;(1) Used to prepare E. coli subunit vaccine; (2)用于制备检测大肠杆菌感染的试剂或试剂盒。(2) Used to prepare reagents or kits for detecting E. coli infection.
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* Cited by examiner, † Cited by third party
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CN118791628A (en) * 2024-07-03 2024-10-18 中国农业科学院上海兽医研究所(中国动物卫生与流行病学中心上海分中心) A kind of avian pathogenic Escherichia coli antigen multi-epitope fusion protein and its preparation method and application
CN119119298A (en) * 2024-09-14 2024-12-13 中国动物卫生与流行病学中心 A salmonella antigen fusion protein and recombinant Lactococcus lactis

Cited By (3)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CN118791628A (en) * 2024-07-03 2024-10-18 中国农业科学院上海兽医研究所(中国动物卫生与流行病学中心上海分中心) A kind of avian pathogenic Escherichia coli antigen multi-epitope fusion protein and its preparation method and application
CN118791628B (en) * 2024-07-03 2025-02-14 中国农业科学院上海兽医研究所(中国动物卫生与流行病学中心上海分中心) A kind of avian pathogenic Escherichia coli antigen multi-epitope fusion protein and its preparation method and application
CN119119298A (en) * 2024-09-14 2024-12-13 中国动物卫生与流行病学中心 A salmonella antigen fusion protein and recombinant Lactococcus lactis

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