CN116355951B - Construction method of melon VIGS silencing system based on bud vacuum infection - Google Patents
Construction method of melon VIGS silencing system based on bud vacuum infection Download PDFInfo
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Abstract
Description
技术领域Technical field
本发明涉及植物基因工程技术领域,具体为一种基于芽真空侵染的甜瓜VIGS沉默体系的构建方法及应用。The invention relates to the technical field of plant genetic engineering, specifically a construction method and application of a melon VIGS silencing system based on vacuum infection of buds.
背景技术Background technique
甜瓜(Cucumis melo L.)起源于热带、亚热带地区,是一种重要的世界性水果,在全世界广泛种植。中国已连续30余年成为世界上甜瓜种植面积最大、产量最高的国家。近年来,利用现代分子生物技术挖掘甜瓜抗逆、生长发育等重要农艺性状关键基因,解析其基因功能,并应用到品种选育,极大的缩短了育种进程。由于甜瓜转基因体系不成熟且周期长,基因功能验证大多依赖拟南芥和烟草等模式植物的异源表达系统。病毒诱导的基因沉默(Virus-induced gene silencing,VIGS)是一种RNA介导的防御机制,通过在病毒基因组中插入由目的基因片段构建成的重组病毒载体,实现对植物内源基因沉默表达。与转基因技术相比,VIGS沉默技术简便、高效、周期短。此外,不同的沉默体系方法植株出现沉默表型时间、沉默效率也不一样,开发出一种高效且在苗期早期就快速显现沉默表型的VIGS体系非常重要。Melon (Cucumis melo L.) originates from tropical and subtropical regions. It is an important cosmopolitan fruit and is widely cultivated around the world. For more than 30 consecutive years, China has become the country with the largest melon planting area and the highest yield in the world. In recent years, modern molecular biology technology has been used to excavate key genes for important agronomic traits such as stress resistance, growth and development of melon, analyze their gene functions, and apply them to variety selection, which has greatly shortened the breeding process. Due to the immaturity and long cycle of the melon transgenic system, gene function verification mostly relies on heterologous expression systems in model plants such as Arabidopsis thaliana and tobacco. Virus-induced gene silencing (VIGS) is an RNA-mediated defense mechanism that silences and expresses endogenous genes in plants by inserting recombinant viral vectors constructed from target gene fragments into the viral genome. Compared with transgenic technology, VIGS silencing technology is simple, efficient and has a short cycle. In addition, the time and silencing efficiency of plants with different silencing system methods are also different. It is very important to develop an efficient VIGS system that can quickly display the silencing phenotype in the early seedling stage.
八氢番茄红素脱氢酶是类胡萝卜素生物合成途径中的一个限速酶,催化无色的八氢番茄红素脱氢生成番茄红素,进而转变为有色的类胡萝卜素,对叶绿体有一定的保护作用。当编码该酶的基因被沉默后,植物便丧失了类胡萝卜素的光保护作用,导致叶绿素降解,从而使叶片等组织呈现出白化效应,该基因可作为基因沉默体系的报告基因,通过叶片白化表型出现的时间、PDS基因表达水平、叶片叶绿素含量等指标可验证VIGS沉默体系的可行性。Phytoene dehydrogenase is a rate-limiting enzyme in the carotenoid biosynthesis pathway. It catalyzes the dehydrogenation of colorless phytoene to lycopene, which is then converted into colored carotenoids, which has an effect on chloroplasts. certain protective effect. When the gene encoding this enzyme is silenced, the plant loses the photoprotective effect of carotenoids, leading to the degradation of chlorophyll, causing leaves and other tissues to show a whitening effect. This gene can be used as a reporter gene for the gene silencing system, through leaf whitening. The time of phenotype appearance, PDS gene expression level, leaf chlorophyll content and other indicators can verify the feasibility of the VIGS silencing system.
本发明构建了一种基于芽真空侵染的甜瓜VIGS沉默体系,并选用甜瓜八氢番茄红素脱氢酶基因CmPDS为沉默体系的报告基因,以此基因为例,利用本发明构建的VIGS沉默方法对其进行了基因沉默,通过沉默植株的表型统计、CmPDS基因表达量检测验证了本发明的可行性。同时与基于子叶注射法的VIGS沉默体系进行了比较,显示了本发明的高效性。The present invention constructs a melon VIGS silencing system based on vacuum infection of buds, and selects the melon phytoene dehydrogenase gene CmPDS as the reporter gene of the silencing system. Taking this gene as an example, the VIGS silencing system constructed by the present invention is used The method carried out gene silencing, and verified the feasibility of the present invention through phenotypic statistics of silenced plants and detection of CmPDS gene expression. At the same time, it was compared with the VIGS silencing system based on cotyledon injection method, showing the high efficiency of the present invention.
发明内容Contents of the invention
(一)解决的技术问题(1) Technical problems solved
针对现有技术的不足,本发明提供一种基于芽真空侵染的甜瓜VIGS沉默体系的构建方法。In view of the shortcomings of the existing technology, the present invention provides a method for constructing a melon VIGS silencing system based on vacuum infection of buds.
(二)技术方案(2) Technical solutions
为实现以上目的,本发明通过以下技术方案予以实现:一种基于芽真空侵染的甜瓜VIGS沉默体系的构建方法,构建步骤包括:In order to achieve the above objectives, the present invention is realized through the following technical solutions: a method for constructing a melon VIGS silencing system based on vacuum infection of buds. The construction steps include:
a.目的基因特异性片段的克隆;a. Cloning of specific fragments of the target gene;
b.pTRSV2-目的基因特异性片段重组载体的构建;b. Construction of pTRSV2-target gene specific fragment recombinant vector;
c.pTRSV2-目的基因特异性片段重组载体转入农杆菌;c. pTRSV2-target gene specific fragment recombinant vector was transferred into Agrobacterium;
d.侵染受体材料的准备;d. Preparation of infection receptor materials;
e.真空侵染渗透甜瓜种子;e. Vacuum infection penetrates muskmelon seeds;
f.侵染后材料暗培养,再常规培养。f. After infection, the material is cultured in the dark and then cultured regularly.
作为本发明优选的技术方案:步骤a中,所述目的基因特异性片段应是目的基因具有特异性的300bp左右的特异性片段。As a preferred technical solution of the present invention: in step a, the target gene-specific fragment should be a specific fragment of about 300 bp specific to the target gene.
作为本发明优选的技术方案:步骤b中,所述载体的选择采用烟草环斑病毒(Tobacco ringspot virus TRSV载体),辅助载体pTRSV1、重组载体pTRSV2(此载体由山东农业大学耿超赠送Fang et al.,2021),目的基因特异性片段重组到pTRSV2载体。As the preferred technical solution of the present invention: in step b, the vector is selected from Tobacco ringspot virus TRSV vector, auxiliary vector pTRSV1, and recombinant vector pTRSV2 (this vector was donated by Geng Chao of Shandong Agricultural University to Fang et al. ., 2021), the target gene-specific fragment is recombined into the pTRSV2 vector.
作为本发明优选的技术方案:步骤c中,农杆菌菌株为GV3101。As the preferred technical solution of the present invention: in step c, the Agrobacterium strain is GV3101.
作为本发明优选的技术方案:步骤d中,侵染受体材料为芽萌发长度为1~2cm的去种皮的甜瓜种子,培养方法为将甜瓜种子去除种皮放在半MS固体培养基上,在30℃黑暗的人工气候室中萌发24-36h,所述半MS固体培养基配置方法为2.22gMS,15g琼脂、溶于1L蒸馏水中,调pH为5.8,121℃高温高压灭菌20min后,4℃保存。As a preferred technical solution of the present invention: in step d, the infection receptor material is a melon seed with a bud germination length of 1 to 2 cm, and the seed coat is removed. The culture method is to remove the seed coat from the melon seeds and place them on a semi-MS solid medium. , germinated in a dark artificial climate chamber at 30°C for 24-36h. The preparation method of the semi-MS solid medium was 2.22gMS, 15g agar, dissolved in 1L distilled water, adjusted to pH 5.8, and sterilized at 121°C for 20 minutes. , stored at 4°C.
作为本发明优选的技术方案:步骤e中,侵染压强为0.9kPa,菌液浓度OD600为1.0、菌液为体积比1:1的含辅助载体pTRSV1载体与pTRSV2-目的基因重组载体的重悬液的混合菌液,侵染时间为5min。其中菌体重悬液配置方法,4.43g的MS、30g的蔗糖、溶于1L蒸馏水中,调pH为5.8,121℃高温高压灭菌20min后,在超净台中加入0.04g乙酰丁香酮(AS),0.25gMES;真空侵染前将除去种皮的芽萌发长度为1~2cm的甜瓜种子置于混合菌液中浸泡1-2小时。As the preferred technical solution of the present invention: in step e, the infection pressure is 0.9kPa, the bacterial liquid concentration OD600 is 1.0, and the bacterial liquid is a resuspension of the pTRSV1 vector containing the auxiliary vector and the pTRSV2-target gene recombinant vector in a volume ratio of 1:1. The mixed bacterial solution of liquid, the infection time is 5 minutes. The method for preparing the bacterial resuspension is to dissolve 4.43g of MS and 30g of sucrose in 1L of distilled water, adjust the pH to 5.8, and after sterilizing at 121°C for 20 minutes, add 0.04g of acetosyringone (AS) in the ultra-clean bench. , 0.25g MES; before vacuum infection, soak the melon seeds with a bud germination length of 1 to 2 cm with the seed coat removed in the mixed bacterial solution for 1-2 hours.
作为本发明优选的技术方案:步骤f中,侵染后的受体材料培养条件是:先在共培养培养基上25℃黑暗培养3~5天,共培养结束后定植于草炭、蛭石、珍珠岩(比例为1:1:1)混合基质中,于25℃、光周期16h/8h(光照/黑暗)、相对湿度为75%,光照强度为22000Lx的条件下培养。As the preferred technical solution of the present invention: in step f, the culture conditions of the infected receptor material are: first culture on the co-culture medium at 25°C in the dark for 3 to 5 days, and then colonize on peat, vermiculite, Culture in perlite (ratio 1:1:1) mixed matrix at 25°C, photoperiod 16h/8h (light/dark), relative humidity 75%, light intensity 22000Lx.
作为本发明优选的技术方案:步骤f中,所述暗培养方法为将真空侵染后的甜瓜种子置于共培养培养基,在25℃,黑暗的条件下培养3~5天,所述共培养培养基配置方法为4.43g的MS、30g的蔗糖、15g琼脂溶于1L蒸馏水中,调pH为5.8,121℃高温高压灭菌20min后,在超净台中加入0.04g乙酰丁香酮AS,0.25gMES。As a preferred technical solution of the present invention: in step f, the dark culture method is to place the vacuum-infected muskmelon seeds in a co-culture medium and culture them for 3 to 5 days under dark conditions at 25°C. The culture medium preparation method is to dissolve 4.43g MS, 30g sucrose, and 15g agar in 1L distilled water, adjust the pH to 5.8, and after sterilizing at 121°C for 20 minutes, add 0.04g acetosyringone AS, 0.25 gMES.
作为本发明优选的技术方案:步骤f中,所述常规培养条件为:培养箱昼夜光周期为光/暗:16h/8h,温度为25℃,相对湿度为75%,光照强度为22000Lx。常规培养直至出现沉默的白化表型。As the preferred technical solution of the present invention: in step f, the conventional culture conditions are: the day and night photoperiod of the incubator is light/dark: 16h/8h, the temperature is 25°C, the relative humidity is 75%, and the light intensity is 22000Lx. Culture was performed routinely until a silent albino phenotype appeared.
(三)有益效果(3) Beneficial effects
本发明提供了一种基于芽真空侵染的甜瓜VIGS沉默体系的构建方法。具备以下有益效果:The invention provides a method for constructing a muskmelon VIGS silencing system based on vacuum infection of buds. It has the following beneficial effects:
本发明的甜瓜VIGS体系是利用芽真空侵染渗透的方法,严格控制真空侵染压强、菌液侵染浓度和侵染时间,将含目的片段的TRSV(烟草环斑病毒)载体侵染甜瓜种子,快速高效的获得基因沉默植株,从而验证相应基因的功能。相对于甜瓜遗传转化体系操作简单、速度快,克服了甜瓜遗传转化体系不稳定、效率低、周期长的不足。同时,该方法也克服了甜瓜内源基因在异源模式作物中只能够过表达而不能基因沉默的问题;此外本发明体系能够快速的在苗期第一片真叶出现沉默表型,为快速的研究甜瓜逆境胁迫及生长发育等相关基因功能奠定了基础。The melon VIGS system of the present invention utilizes the method of vacuum infection and penetration of buds, strictly controls the vacuum infection pressure, bacterial solution infection concentration and infection time, and infects the melon seeds with the TRSV (Tobacco Ringspot Virus) vector containing the target fragment. , quickly and efficiently obtain gene-silenced plants to verify the function of the corresponding gene. Compared with the melon genetic transformation system, the operation is simple and fast, and it overcomes the shortcomings of the melon genetic transformation system: instability, low efficiency, and long cycle. At the same time, this method also overcomes the problem that endogenous genes of melon can only be overexpressed but not gene silenced in heterologous model crops; in addition, the system of the present invention can quickly produce a silent phenotype in the first true leaf at the seedling stage, which is rapid. This laid the foundation for research on muskmelon stress, growth and development and other related gene functions.
附图说明Description of drawings
图1为CmPDS基因沉默特异性片段扩增;泳道1:DL2000 DNA Marker泳道2:阴性对照泳道3:CmPDS沉默特异性目的片段;Figure 1 shows the amplification of the CmPDS gene silencing specific fragment; Lane 1: DL2000 DNA Marker Lane 2: Negative control Lane 3: CmPDS silencing specific target fragment;
图2为pTRSV2-CmPDS重组载体阳性克隆PCR检测;泳道1:DL2000 DNA Marker泳道2:阴性对照泳道3-6:pTRSV2-CmPDS PCR产物;Figure 2 shows the PCR detection of positive clones of pTRSV2-CmPDS recombinant vector; Lane 1: DL2000 DNA Marker Lane 2: Negative control Lanes 3-6: pTRSV2-CmPDS PCR product;
图3为pTRSV2-CmPDS转化农杆菌阳性克隆PCR检测;泳道1:DL2000 DNA Marker泳道2:阴性对照泳道3-4:pTRSV2空载泳道5-6:pTRSV2-CmPDS PCR产物;Figure 3 shows the PCR detection of positive clones transformed by pTRSV2-CmPDS into Agrobacterium; lane 1: DL2000 DNA Marker lane 2: negative control lanes 3-4: pTRSV2 empty lanes 5-6: pTRSV2-CmPDS PCR product;
图4为平放于萌发培养基的甜瓜种子;Figure 4 shows melon seeds placed flat on the germination medium;
图5为用于侵染的芽长度适宜的甜瓜种子;Figure 5 shows melon seeds with appropriate bud length for infection;
图6真空侵染后甜瓜沉默植株的表型;Figure 6 Phenotype of silent melon plants after vacuum infection;
图7真空侵染后甜瓜沉默植株CmPDS基因的相对表达量;Figure 7 Relative expression of CmPDS gene in muskmelon silenced plants after vacuum infection;
图8pTRSV2-CmPDS真空侵染后甜瓜沉默植株三叶一心时期的表型与叶绿素含量;Figure 8 Phenotype and chlorophyll content of melon silenced plants at the three-leaf and one-center stage after vacuum infection with pTRSV2-CmPDS;
图9子叶注射后甜瓜植株的表型(A)和CmPDS基因相对表达量(B)。Figure 9 Phenotype of melon plants after cotyledon injection (A) and relative expression of CmPDS gene (B).
具体实施方式Detailed ways
下面将结合本发明实施例中的附图,对本发明实施例中的技术方案进行清楚、完整地描述,显然,所描述的实施例仅仅是本发明一部分实施例,而不是全部的实施例。基于本发明中的实施例,本领域普通技术人员在没有做出创造性劳动前提下所获得的所有其他实施例,都属于本发明保护的范围。The technical solutions in the embodiments of the present invention will be clearly and completely described below with reference to the accompanying drawings in the embodiments of the present invention. Obviously, the described embodiments are only some of the embodiments of the present invention, rather than all the embodiments. Based on the embodiments of the present invention, all other embodiments obtained by those of ordinary skill in the art without creative efforts fall within the scope of protection of the present invention.
请参阅图1-5,本发明实施例提供一种技术方案:一种基于芽真空侵染的甜瓜VIGS沉默体系的构建方法,构建步骤包括:Please refer to Figures 1-5. The embodiment of the present invention provides a technical solution: a method for constructing a melon VIGS silencing system based on vacuum infection of buds. The construction steps include:
a.目的基因特异性片段的克隆;a. Cloning of specific fragments of the target gene;
b.pTRSV2-目的基因特异性片段重组载体的构建;b. Construction of pTRSV2-target gene specific fragment recombinant vector;
c.pTRSV2-目的基因特异性片段重组载体转入农杆菌;c. pTRSV2-target gene specific fragment recombinant vector was transferred into Agrobacterium;
d.侵染受体材料的准备;d. Preparation of infection receptor materials;
e.真空侵染渗透甜瓜种子;e. Vacuum infection penetrates muskmelon seeds;
f.侵染后材料暗培养,再常规培养。f. After infection, the material is cultured in the dark and then cultured regularly.
作为本发明优选的技术方案:步骤a中,所述目的基因特异性片段应是目的基因具有特异性的300bp左右的特异性片段。As a preferred technical solution of the present invention: in step a, the target gene-specific fragment should be a specific fragment of about 300 bp specific to the target gene.
作为本发明优选的技术方案:步骤b中,所述载体的选择采用烟草环斑病毒(Tobacco ringspot virus TRSV载体),辅助载体pTRSV1、重组载体pTRSV2;目的基因特异性片段重组到pTRSV2载体。As a preferred technical solution of the present invention: in step b, the vector is selected using Tobacco ringspot virus TRSV vector, auxiliary vector pTRSV1, and recombinant vector pTRSV2; the target gene specific fragment is recombined into the pTRSV2 vector.
作为本发明优选的技术方案:步骤c中,农杆菌菌株为GV3101。As the preferred technical solution of the present invention: in step c, the Agrobacterium strain is GV3101.
作为本发明优选的技术方案:步骤d中,侵染受体材料为芽萌发长度为1~2cm的去种皮的甜瓜种子,培养方法为将甜瓜种子去除种皮放在半MS固体培养基上,在30℃黑暗的人工气候室中萌发24-36h,所述半MS固体培养基配置方法为2.22gMS,15g琼脂、溶于1L蒸馏水中,调pH为5.8,121℃高温高压灭菌20min后,4℃保存。As a preferred technical solution of the present invention: in step d, the infection receptor material is a melon seed with a bud germination length of 1 to 2 cm, and the seed coat is removed. The culture method is to remove the seed coat from the melon seeds and place them on a semi-MS solid medium. , germinated in a dark artificial climate chamber at 30°C for 24-36h. The preparation method of the semi-MS solid medium was 2.22gMS, 15g agar, dissolved in 1L distilled water, adjusted to pH 5.8, and sterilized at 121°C for 20 minutes. , stored at 4°C.
作为本发明优选的技术方案:步骤e中,侵染压强为0.9kPa,菌液浓度OD600为1.0、菌液为体积比1:1的含辅助载体pTRSV1载体与pTRSV2-目的基因重组载体的重悬液的混合菌液,侵染时间为5min。其中菌体重悬液配置方法,4.43g的MS、30g的蔗糖、溶于1L蒸馏水中,调pH为5.8,121℃高温高压灭菌20min后,在超净台中加入0.04g乙酰丁香酮(AS),0.25gMES;真空侵染前将除去种皮的芽萌发长度为1~2cm的甜瓜种子置于混合菌液中浸泡1-2小时。As the preferred technical solution of the present invention: in step e, the infection pressure is 0.9kPa, the bacterial liquid concentration OD600 is 1.0, and the bacterial liquid is a resuspension of the pTRSV1 vector containing the auxiliary vector and the pTRSV2-target gene recombinant vector in a volume ratio of 1:1. The mixed bacterial solution of liquid, the infection time is 5 minutes. The method for preparing the bacterial resuspension is to dissolve 4.43g of MS and 30g of sucrose in 1L of distilled water, adjust the pH to 5.8, and after sterilizing at 121°C for 20 minutes, add 0.04g of acetosyringone (AS) in the ultra-clean bench. , 0.25g MES; before vacuum infection, soak the melon seeds with a bud germination length of 1 to 2 cm with the seed coat removed in the mixed bacterial solution for 1-2 hours.
作为本发明优选的技术方案:步骤f中,侵染后的受体材料培养条件是:先在共培养培养基上25℃黑暗培养3~5天,共培养结束后定植于草炭、蛭石、珍珠岩(比例为1:1:1)混合基质中,于25℃、光周期16h/8h(光照/黑暗)、相对湿度为75%,光照强度为22000Lx的条件下培养。As the preferred technical solution of the present invention: in step f, the culture conditions of the infected receptor material are: first culture on the co-culture medium at 25°C in the dark for 3 to 5 days, and then colonize on peat, vermiculite, Culture in perlite (ratio 1:1:1) mixed matrix at 25°C, photoperiod 16h/8h (light/dark), relative humidity 75%, light intensity 22000Lx.
作为本发明优选的技术方案:步骤f中,所述暗培养方法为将真空侵染后的甜瓜种子置于共培养培养基,在25℃,黑暗的条件下培养3~5天,所述共培养培养基配置方法为4.43g的MS、30g的蔗糖、15g琼脂溶于1L蒸馏水中,调pH为5.8,121℃高温高压灭菌20min后,在超净台中加入0.04g乙酰丁香酮AS,0.25gMES。As a preferred technical solution of the present invention: in step f, the dark culture method is to place the vacuum-infected muskmelon seeds in a co-culture medium and culture them for 3 to 5 days under dark conditions at 25°C. The culture medium preparation method is to dissolve 4.43g MS, 30g sucrose, and 15g agar in 1L distilled water, adjust the pH to 5.8, and after sterilizing at 121°C for 20 minutes, add 0.04g acetosyringone AS, 0.25 gMES.
作为本发明优选的技术方案:步骤f中,所述常规培养条件为:培养箱昼夜光周期为光/暗:16h/8h,温度为25℃,相对湿度为75%,光照强度为22000Lx。常规培养直至出现沉默的白化表型。As the preferred technical solution of the present invention: in step f, the conventional culture conditions are: the day and night photoperiod of the incubator is light/dark: 16h/8h, the temperature is 25°C, the relative humidity is 75%, and the light intensity is 22000Lx. Culture was performed routinely until a silent albino phenotype appeared.
需要说明的是:VIGS实验所用试剂:LB培养基:称取5g/L酵母提取物、10g/L蛋白胨和10g/L NaCl,加蒸馏水定容到1L。配置LB固体培养基时需加入15g琼脂,121℃高温高压灭菌20min后使用;Kan(100mg/ml):称取5g溶于50ml无菌水,用0.22um过滤器过滤除菌,分装到2ml EP管,保存于-20℃;Rif(50mg/ml):称取2.5g溶于50ml二甲基亚砜(DMSO),分装到2ml EP管,保存于-20℃;AS(100uM):称取0.2gAS溶于10ml二甲基亚砜(DMSO),分装到2mlEP管,保存于-20℃;MES(1.25mM):称取1.25g溶于10ml灭菌水,调节pH=5.8,分装到EP管,保存于-20℃;农杆菌重悬液:4.43g的MS、30g的蔗糖、溶于1L蒸馏水中,调pH为5.8,121℃高温高压灭菌20min后,在超净台中加入0.04g乙酰丁香酮AS,0.25gMES,-20℃保存;萌发培养基:2.22gMS,15g琼脂、溶于1L蒸馏水中,调pH为5.8,121℃高温高压灭菌20min后,4℃保存;共培养培养基:4.43g的MS、30g的蔗糖、15g琼脂溶于1L蒸馏水中,调pH为5.8,121℃高温高压灭菌20min后,在超净台中加入0.04g乙酰丁香酮AS,0.25gMES,-20℃保存。It should be noted that the reagents used in the VIGS experiment: LB medium: weigh 5g/L yeast extract, 10g/L peptone and 10g/L NaCl, add distilled water to make the volume to 1L. When configuring LB solid culture medium, 15g agar needs to be added, sterilized at 121°C for 20 minutes before use; Kan (100mg/ml): weigh 5g and dissolve in 50ml sterile water, filter and sterilize with a 0.22um filter, and aliquot 2ml EP tube, store at -20℃; Rif (50mg/ml): Weigh 2.5g and dissolve in 50ml dimethyl sulfoxide (DMSO), aliquot into 2ml EP tube, store at -20℃; AS (100uM) : Weigh 0.2g AS and dissolve in 10ml dimethyl sulfoxide (DMSO), aliquot into 2ml EP tubes, store at -20°C; MES (1.25mM): Weigh 1.25g and dissolve in 10ml sterile water, adjust pH = 5.8 , aliquot into EP tubes, and store at -20°C; Agrobacterium resuspension: 4.43g MS, 30g sucrose, dissolved in 1L distilled water, adjust pH to 5.8, sterilize at 121°C for 20 minutes, and then Add 0.04g acetosyringone AS and 0.25g MES to the clean platform and store at -20°C; germination medium: 2.22gMS, 15g agar, dissolved in 1L distilled water, adjust pH to 5.8, sterilize at 121°C for 20 minutes, then sterilize at 4°C Preservation; co-culture medium: 4.43g MS, 30g sucrose, 15g agar dissolved in 1L distilled water, adjust pH to 5.8, sterilize at 121°C for 20 minutes, add 0.04g acetosyringone AS in the ultra-clean bench, 0.25g MES, stored at -20°C.
实施例1Example 1
(1)目的基因特异性片段的克隆(1) Cloning of target gene-specific fragments
本发明实施例中选用了甜瓜八氢番茄红素脱氢酶基因CmPDS,该基因为病毒诱导的基因沉默体系的报告基因,该基因编码的酶是类胡萝卜素生物合成途径中的一个限速酶,催化无色的八氢番茄红素脱氢生成番茄红素,进而转变为有色的类胡萝卜素。当编码该酶的基因被沉默后,植物便丧失了类胡萝卜素的光保护作用,从而使叶片呈现出白化效应,通过叶片白化表型出现的时间、PDS基因表达水平指标验证本沉默体系的可行性。In the embodiment of the present invention, the melon phytoene dehydrogenase gene CmPDS was selected. This gene is a reporter gene of the virus-induced gene silencing system. The enzyme encoded by this gene is a rate-limiting enzyme in the carotenoid biosynthesis pathway. , catalyzes the dehydrogenation of colorless phytoene to lycopene, which is then converted into colored carotenoids. When the gene encoding this enzyme is silenced, the plant loses the photoprotective effect of carotenoids, causing the leaves to show a bleaching effect. The feasibility of this silencing system was verified by the time when the leaf bleaching phenotype appears and the PDS gene expression level index. sex.
依据甜瓜基因组数据库公布的CmPDS(MELO3C017772.2)基因CDS序列,选取具有特异性的从1065bp到1365bp的300bp片段作为目的基因特异性片段。Based on the CmPDS (MELO3C017772.2) gene CDS sequence published in the melon genome database, a specific 300 bp fragment from 1065 bp to 1365 bp was selected as the target gene-specific fragment.
目的基因特异性片段序列:Target gene-specific fragment sequence:
TTTGGGGCTTATCCCAATGTGCAGAACTTGTTTGGAGAACTTGGAATCAATGACCGATTACAGTGGAAGGAACATTCTTTGGGGCTTATCCCAATGTGCAGAACTTGTTTGGAGAACTTGGAATCAATGACCGATTACAGTGGAAGGAACATTC
AATGATATTTGCTATGCCAAACAAGCCGGGGGAGTTCAGCCGATTTGATTTCCCTGAAAAACTTCCTGCACCCATAAAATGATATTTGCTATGCCAAACAAGCCGGGGGAGTTCAGCCGATTTGATTTCCCTGAAAAACTTCCTGCACCCATAA
ATGGGATATGGGCTATTTTAAGGAACAACGAGATGCTTACTTGGCCAGAGAAAATTAAATTTGCAATTGGGCTCCTGATGGGATATGGGCTATTTTAAGGAACAACGAGATGCTTACTTGGCCAGAGAAAATTAAATTTGCAATTGGGCTCCTG
CCAGCAATGCTTGGTGGGCAATCTTATGTTGAGGCTCAAGATAATTTAACTGTGCAAGAGTGGATGAGACCAGCAATGCTTGGTGGGCAATCTTATGTTGAGGCTCAAGATAATTTAACTGTGCAAGAGTGGATGAGA
选取长势健壮的甜瓜叶片进行取样,利用北京华越洋生物的快速通用植物RNA提取试剂盒,提取植株总RNA。利用Vazyme公司的Hiscript III 1st strand cDNA synthesiskit(+gDNA wiper)反转录试剂盒进行反转录,以反转录获得的cDNA为模板,利用CmPDS特异性片段引物(CmPDS2F:TGTTTTAAATGCCTTTACGTATTTGGGGCTTATCCCAA、CmPDS2R:AACACACAAAACACCTACGTATCTCATCCACTCTTGC),进行PCR扩增(2×Phanta Max Master Mix,Vazyme),反应体系如表1。反应程序为:预变性95℃,3min;变性95℃,15s;退火56℃,15s;延伸72℃,30s;2-4步设置循环数为33;终延伸72℃,5min;最后4℃暂存。反应结束后,吸取7μl产物进行琼脂糖凝胶电泳检测,如图1所示所扩增出的片段与目的片段大小一致。将PCR产物进行琼脂糖凝胶电泳(110v,15min),之后通过胶回收试剂盒(Plasmid Mini Kit,Vazyme)回收纯化目的基因。Select healthy melon leaves for sampling, and use Beijing Huayueyang Biotech's rapid universal plant RNA extraction kit to extract total plant RNA. Use Vazyme's Hiscript III 1st strand cDNA synthesis kit (+gDNA wiper) reverse transcription kit for reverse transcription, use the cDNA obtained by reverse transcription as a template, and use CmPDS-specific fragment primers (CmPDS2F: TGTTTTAAATGCCTTTACGTATTTGGGGCTTATCCCAA, CmPDS2R: AACACACAAAACACCTACGTATCTCATCCACTCTTGC) , perform PCR amplification (2×Phanta Max Master Mix, Vazyme), and the reaction system is as shown in Table 1. The reaction program is: pre-denaturation at 95°C, 3min; denaturation at 95°C, 15s; annealing at 56°C, 15s; extension at 72°C, 30s; set the number of cycles for steps 2-4 to 33; final extension at 72°C, 5min; and finally 4°C temporary extension. live. After the reaction, 7 μl of the product was pipetted for agarose gel electrophoresis detection. As shown in Figure 1, the amplified fragment was consistent in size with the target fragment. The PCR product was subjected to agarose gel electrophoresis (110v, 15min), and then passed through a gel recovery kit ( Plasmid Mini Kit, Vazyme) to recover and purify the target gene.
表1PCR扩增体系Table 1 PCR amplification system
(2)pTRSV2-CmPDS重组载体的构建(2) Construction of pTRSV2-CmPDS recombinant vector
a.pTRSV2载体线性化a. Linearization of pTRSV2 vector
按照表2酶切反应体系配置体系;PCR仪中进行反应:37℃、60min,80℃、20min;反应结束后按照产物纯化试剂盒(Plasmid Mini Kit,Vazyme)进行产物纯化。Configure the enzyme digestion reaction system according to Table 2; perform the reaction in a PCR machine: 37°C, 60min, 80°C, 20min; after the reaction, follow the product purification kit ( Plasmid Mini Kit, Vazyme) for product purification.
表2酶切反应体系Table 2 Enzyme digestion reaction system
b.pTRSV2线性化载体与目的基因特异性片段重组b. Recombination of pTRSV2 linearized vector and target gene-specific fragment
按照一步重组试剂盒(One Step Cloning Kit,Vazyme),重组反应体系如下表3,将重组后的反应液进行大肠杆菌转化,所用大肠杆菌菌株为DH5α感受态细胞(北京庄盟国际生物科技有限公司,北京),挑取单克隆,利用特异性引物(CmPDS1F:TTTGGGGCTTATCCCAA、CmPDS1R:TCTCATCCACTCTTGC)进行PCR菌检,PCR反应体系如表4,反应程序为:94℃,3-5min;94℃,30s;56℃,30s;72℃,30s;其中,第二步至第四步程序循环33个;72℃,5min;最后4℃暂存。反应结束后,吸取7μl产物进行琼脂糖凝胶电泳检测,结果如图2所示。According to the One Step Cloning Kit (Vazyme), the recombination reaction system is as shown in Table 3. The recombinant reaction solution was transformed into E. coli. The E. coli strain used was DH5α competent cells (Beijing Zhuangmeng International Biotechnology Co., Ltd. , Beijing), single clones were picked, and specific primers (CmPDS1F: TTTGGGGGCTTATCCCAA, CmPDS1R: TCTCATCCACTCTTGC) were used for PCR bacterial detection. The PCR reaction system is shown in Table 4. The reaction program is: 94°C, 3-5min; 94°C, 30s; 56℃, 30s; 72℃, 30s; among them, the second to fourth step program loops 33 times; 72℃, 5min; the last 4℃ is temporarily stored. After the reaction, 7 μl of the product was taken for agarose gel electrophoresis detection. The results are shown in Figure 2.
表3同源重组反应体系Table 3 Homologous recombination reaction system
表4PCR反应体系Table 4 PCR reaction system
(3)pTRSV2空载、pTRSV2-CmPDS重组载体转入农杆菌(3) pTRSV2 empty vector and pTRSV2-CmPDS recombinant vector were transferred into Agrobacterium
农杆菌菌株选用GV3101,将其农杆菌感受态(北京庄盟国际生物科技有限公司,北京)于冰水浴片刻待其部分融化,处于冰水混合状态时插入冰浴中。分别将1μg pTRSV2质粒、pTRSV2-CmPDS重组质粒加入100μl农杆菌感受态细胞中,用手拨打管底混匀,依次于冰上静置5min、液氮5min、37℃水浴5min、冰浴5min。加入800μl无抗生素的LB液体培养基,于28℃振荡培养2~3小时。5000rpm离心1min收菌,留取100μ上清,轻轻吹打重悬菌块涂布于含有Rif(50mg·L-1)和Kan(100mg·L-1)的LB平板上,倒置放于28℃培养箱培养3天。利用pTRSV2通用引物(pTRSV2 F:TGCGTCGCACTGAGGCA、pTRSV2 R:GCAGCTGACAGACAGACA)对单克隆菌液进行PCR阳性鉴定,结果如图3所示,表明pTRSV2空载、pTRSV2-CmPDS载体成功导入农杆菌GV3101中,可用于真空侵染。The Agrobacterium strain GV3101 was selected. The Agrobacterium competent strain (Beijing Zhuangmeng International Biotechnology Co., Ltd., Beijing) was placed in an ice water bath for a while until it was partially melted. When it was in a mixed state of ice and water, it was inserted into the ice bath. Add 1 μg of pTRSV2 plasmid and pTRSV2-CmPDS recombinant plasmid to 100 μl of Agrobacterium competent cells, mix by hand at the bottom of the tube, and then place on ice for 5 min, liquid nitrogen for 5 min, 37°C water bath for 5 min, and ice bath for 5 min. Add 800 μl of antibiotic-free LB liquid culture medium and incubate with shaking at 28°C for 2 to 3 hours. Centrifuge at 5000rpm for 1 minute to collect the bacteria. Keep 100μ of the supernatant. Gently pipette and resuspend the bacterial mass and spread it on an LB plate containing Rif (50mg·L-1) and Kan (100mg·L-1). Place it upside down at 28°C. Culture in the incubator for 3 days. The pTRSV2 universal primers (pTRSV2 F: TGCGTCGCACTGAGGCA, pTRSV2 R: GCAGCTGACAGACAGACA) were used to conduct PCR positive identification of the single clone bacterial liquid. The results are shown in Figure 3, indicating that the pTRSV2 empty vector and pTRSV2-CmPDS vector were successfully introduced into Agrobacterium GV3101 and can be used for Vacuum infestation.
(4)侵染受体材料的准备(4) Preparation of infection receptor materials
将甜瓜种子55℃温汤浸种60min,去种皮,超净工作台内75%的酒精消毒30s,灭菌ddH2O清洗1次,然后用2%的次氯酸钠溶液(含0.1%Tween 20)浸泡震荡消毒15min,再用灭菌ddH2O清洗5次,平放于萌发培养基上,放置方式如图4。然后放于35℃黑暗的人工气候培养箱中萌发,选择芽长度为1~2cm的种子进行侵染(图5)。Soak the melon seeds in warm water at 55°C for 60 minutes, remove the seed coat, disinfect with 75% alcohol in a clean workbench for 30 seconds, wash once with sterilized ddH 2 O, and then soak and shake with 2% sodium hypochlorite solution (containing 0.1% Tween 20) Disinfect for 15 minutes, then wash 5 times with sterilized ddH 2 O, and place flat on the germination medium as shown in Figure 4. Then place them in a dark artificial climate incubator at 35°C for germination, and select seeds with a bud length of 1 to 2 cm for infection (Figure 5).
(5)真空侵染渗透甜瓜种子(5) Vacuum infection and penetration of melon seeds
挑取新鲜培养的含pTRSV1、pTRSV2和目的基因特异性片段的pTRSV2-CmPDS的农杆菌GV3101单菌落,分别接种到4mLLB液体培养基中,28℃、220-250r/min培养4~6h;全部转移至40~50mL LB液体培养基中,28℃、220-250r/min过夜培养,直至菌液OD600为0.5~1.5左右;5000r离心5min,收集菌体细胞,以适当体积的重悬液分别重悬至终浓度为0.5、1.0、1.5(OD600);辅助载体pTRSV1分别与pTRSV2-CmPDS、pTRSV2空载的重悬液按体积比1∶1混匀,等体积混合的重悬液于室温下静置3~4h,将种子放置于含有菌液的重悬液中浸泡1-2小时。随后采用芽真空侵染渗透的方法侵染萌发的甜瓜种子;Pick freshly cultured single colonies of Agrobacterium GV3101 containing pTRSV1, pTRSV2 and pTRSV2-CmPDS specific fragments of the target gene, inoculate them into 4mLLB liquid medium respectively, and culture them at 28°C and 220-250r/min for 4 to 6 hours; transfer all Into 40-50mL LB liquid medium, culture overnight at 28°C, 220-250r/min until the OD600 of the bacterial solution is about 0.5-1.5; centrifuge at 5000r for 5 minutes, collect the bacterial cells, and resuspend them with an appropriate volume of resuspension solution. The final concentration is 0.5, 1.0, 1.5 (OD600); the auxiliary vector pTRSV1 is mixed with the resuspension of pTRSV2-CmPDS and pTRSV2 empty respectively at a volume ratio of 1:1, and the mixed resuspension of equal volumes is allowed to stand at room temperature. After 3 to 4 hours, place the seeds in a resuspension containing bacterial liquid and soak for 1 to 2 hours. The bud vacuum infection and infiltration method is then used to infect the germinated melon seeds;
(6)侵染后材料暗培养,再常规培养(6) After infection, the material is cultured in the dark and then cultured regularly.
将侵染后的甜瓜种子平放于共培养培养基上,25℃黑暗培养3~5天;共培养结束后定植于草炭、蛭石、珍珠岩(比例为1:1:1)混合基质中,随后于25℃、光周期16h/8h(光照/黑暗)、相对湿度为75%,光照强度为22000Lx的条件下培养。对每种处理方式处理10个单株。Place the infected melon seeds flat on the co-culture medium and cultivate them in the dark at 25°C for 3 to 5 days; after the co-culture is completed, they are planted in a mixed matrix of peat, vermiculite, and perlite (the ratio is 1:1:1) , and then cultured at 25°C, a photoperiod of 16h/8h (light/dark), a relative humidity of 75%, and a light intensity of 22000Lx. Treat 10 individual plants for each treatment.
本发明在进行真空侵染渗透时,设计了侵染压强和菌液浓度2个变量、3个浓度梯度(侵染压强分别为0.5kPa、0.7kPa、0.9kPa,菌液浓度分别为0.5、1、1.5),每个处理方式处理10株,如表5所示,当侵染压强为0.9kPa、菌液浓度0.5时获得完全白化的植株2株,沉默效率为20%;当侵染压强0.9kPa、菌液浓度为1.0时,获得8株完全白化的植株,沉默效率为80%;当侵染压强0.9kPa、菌液浓度1.5时,获得5株完全白化的植株,沉默效率为50%;其余组合没有获得基因沉默的白化苗。结果暗示侵染压强为0.9kPa、菌液浓度1.0为最佳真空侵染渗透条件。随后,我们在最佳真空侵染条件下重复了4次(表6),每次处理10株,结果显示,pTRSV2-CmPDS侵染植株后,沉默效率达到85%,进一步证明了本沉默体系的有效性。同时,我们对未侵染对照WT、空载体pTRSV2侵染对照、pTRSV2-CmPDS侵染的植株表型(图6)、CmPDS基因表达量(图7)、叶绿素含量(图8)进行了测定,结果显示与对照相比,pTRSV2-CmPDS侵染的植株在侵染后1周一叶一心时期就快速显示出完全白化表型(图6),体现了本发明体系的速度快、周期短。pTRSV2-CmPDS真空侵染后的沉默植株第一片真叶、第二片真叶的CmPDS的表达量显著低于对照,第一片真叶CmPDS的表达量下降了92%,第二片真叶CmPDS的表达量下降了86%。同时,对三叶一心时期植株的最大光合效率、叶绿素含量进行了测定,结果显示,相对于对照,pTRSV2-CmPDS沉默植株叶片白化、叶绿素荧光强度显著降低(图8A),叶绿素a、叶绿素b、总叶绿素含量也显著降低(图8B)。这些结果暗示了本发明体系沉默效率的高效性。When carrying out vacuum infection and penetration, the present invention designs two variables and three concentration gradients of infection pressure and bacterial liquid concentration (infection pressures are 0.5kPa, 0.7kPa, and 0.9kPa respectively, and bacterial liquid concentrations are 0.5 and 1 respectively. , 1.5), 10 plants were treated in each treatment method. As shown in Table 5, when the infection pressure was 0.9kPa and the bacterial solution concentration was 0.5, 2 completely albino plants were obtained, and the silencing efficiency was 20%; when the infection pressure was 0.9 kPa and the bacterial solution concentration was 1.0, 8 completely albino plants were obtained, and the silencing efficiency was 80%; when the infection pressure was 0.9kPa and the bacterial solution concentration was 1.5, 5 completely albino plants were obtained, and the silencing efficiency was 50%; No gene-silenced albino seedlings were obtained from the remaining combinations. The results indicate that the infection pressure of 0.9kPa and the bacterial solution concentration of 1.0 are the optimal vacuum infection and penetration conditions. Subsequently, we repeated 4 times under optimal vacuum infection conditions (Table 6), with 10 plants in each treatment. The results showed that after pTRSV2-CmPDS infected plants, the silencing efficiency reached 85%, further proving the effectiveness of this silencing system. effectiveness. At the same time, we measured the plant phenotype (Figure 6), CmPDS gene expression (Figure 7), and chlorophyll content (Figure 8) of the uninfected control WT, empty vector pTRSV2 infected control, and pTRSV2-CmPDS infected plants. The results showed that compared with the control, the plants infected with pTRSV2-CmPDS quickly showed a complete albino phenotype at the one-leaf stage one week after infection (Figure 6), which reflected the fast speed and short cycle of the system of the present invention. The expression level of CmPDS in the first and second true leaves of silenced plants after vacuum infection with pTRSV2-CmPDS was significantly lower than that in the control. The expression level of CmPDS in the first true leaf decreased by 92%, and the expression level of CmPDS in the second true leaf decreased by 92%. The expression of CmPDS decreased by 86%. At the same time, the maximum photosynthetic efficiency and chlorophyll content of the plants at the three-leaf and one-center stage were measured. The results showed that compared with the control, the leaves of pTRSV2-CmPDS silenced plants turned white and the chlorophyll fluorescence intensity was significantly reduced (Figure 8A). Chlorophyll a, chlorophyll b, Total chlorophyll content was also significantly reduced (Fig. 8B). These results imply the high efficiency of silencing efficiency of the system of the present invention.
表5不同真空侵染条件对甜瓜植株沉默效率的影响Table 5 Effects of different vacuum infection conditions on silencing efficiency of melon plants
表6最佳真空侵染条件下不同重复的甜瓜植株VIGS沉默效率Table 6 VIGS silencing efficiency of different replicates of melon plants under optimal vacuum infection conditions
同时,本发明也与另外一种基于子叶注射的甜瓜VIGS沉默方法进行了比较,子叶注射法获得的侵染植株不论是在一叶一心时期、还是两叶一心时期都未出现白化表型(图9A);而且其第一片真叶或者第二片真叶CmPDS的表达量与对照相比没有显著差异(图9B),暗示了子叶注射法的VIGS沉默体系早期沉默效率低,相较于本发明方法周期长。At the same time, the present invention was also compared with another melon VIGS silencing method based on cotyledon injection. The infected plants obtained by the cotyledon injection method did not show an albino phenotype in either the one-leaf one-center stage or the two-leaf one-center stage (Fig. 9A); and the expression level of CmPDS in the first true leaf or the second true leaf was not significantly different from the control (Figure 9B), suggesting that the early silencing efficiency of the cotyledon injection VIGS silencing system was low. Compared with this The invention method has a long cycle.
以上显示和描述了本发明的基本原理和主要特征和本发明的优点,对于本领域技术人员而言,显然本发明不限于上述示范性实施例的细节,而且在不背离本发明的精神或基本特征的情况下,能够以其他的具体形式实现本发明。因此,无论从哪一点来看,均应将实施例看作是示范性的,而且是非限制性的,本发明的范围由所附权利要求而不是上述说明限定,因此旨在将落在权利要求的等同要件的含义和范围内的所有变化囊括在本发明内。不应将权利要求中的任何附图标记视为限制所涉及的权利要求。The basic principles and main features of the present invention and the advantages of the present invention have been shown and described above. It is obvious to those skilled in the art that the present invention is not limited to the details of the above exemplary embodiments without departing from the spirit or basics of the present invention. In the case of specific features, the present invention can be implemented in other specific forms. Therefore, the embodiments should be regarded as illustrative and non-restrictive from any point of view, and the scope of the present invention is defined by the appended claims rather than the above description, and it is therefore intended that all claims falling within the claims All changes within the meaning and scope of equivalent elements are included in the present invention. Any reference signs in the claims shall not be construed as limiting the claim in question.
此外,应当理解,虽然本说明书按照实施方式加以描述,但并非每个实施方式仅包含一个独立的技术方案,说明书的这种叙述方式仅仅是为清楚起见,本领域技术人员应当将说明书作为一个整体,各实施例中的技术方案也可以经适当组合,形成本领域技术人员可以理解的其他实施方式。In addition, it should be understood that although this specification is described in terms of implementations, not each implementation only contains an independent technical solution. This description of the specification is only for the sake of clarity, and those skilled in the art should take the specification as a whole. , the technical solutions in each embodiment can also be appropriately combined to form other implementations that can be understood by those skilled in the art.
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